Citrus Sinensis ID: 018550
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 354 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SXD5 | 450 | Flavin-containing monooxy | yes | no | 0.771 | 0.606 | 0.586 | 8e-93 | |
| Q9FWW9 | 465 | Flavin-containing monooxy | no | no | 0.774 | 0.589 | 0.607 | 9e-93 | |
| Q9C8U0 | 450 | Flavin-containing monooxy | yes | no | 0.771 | 0.606 | 0.582 | 2e-92 | |
| A8MRX0 | 459 | Flavin-containing monooxy | no | no | 0.771 | 0.594 | 0.610 | 5e-92 | |
| Q9SXE1 | 462 | Flavin-containing monooxy | no | no | 0.776 | 0.595 | 0.543 | 1e-91 | |
| Q9SS04 | 459 | Flavin-containing monooxy | no | no | 0.774 | 0.596 | 0.572 | 1e-91 | |
| Q9FWW6 | 468 | Flavin-containing monooxy | no | no | 0.762 | 0.576 | 0.584 | 2e-90 | |
| Q94BV5 | 452 | Flavin-containing monooxy | no | no | 0.774 | 0.606 | 0.594 | 4e-89 | |
| Q93Y23 | 461 | Flavin-containing monooxy | no | no | 0.774 | 0.594 | 0.586 | 1e-88 | |
| Q94K43 | 457 | Flavin-containing monooxy | no | no | 0.774 | 0.599 | 0.579 | 5e-85 |
| >sp|Q9SXD5|GSXL3_ARATH Flavin-containing monooxygenase FMO GS-OX-like 3 OS=Arabidopsis thaliana GN=At1g62620 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 340 bits (873), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 163/278 (58%), Positives = 211/278 (75%), Gaps = 5/278 (1%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
HVAVIGAG AGLV EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R VHS
Sbjct: 12 HVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHS 71
Query: 64 SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
S+Y+SLR+N RE G++ +PFV R+ S D RR+P H EVL YL++FA+EFG++++VR
Sbjct: 72 SVYRSLRINGTRECTGYRDFPFVVRS-GVSRDPRRFPSHGEVLAYLKDFAKEFGIEEMVR 130
Query: 124 LHTEVLNARLVESN---KWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSW 179
TEV+ KW+++S +K+ V +E +DAVVVCNGH+ PRLAQ+PGI SW
Sbjct: 131 FETEVVKVSPAAEEGIGKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSW 190
Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP 239
PGK+MHSHNYRIP PF+D+VV+LIG+ +S DI RD+A AKEVH+A RS +T KQ
Sbjct: 191 PGKEMHSHNYRIPEPFRDKVVVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQT 250
Query: 240 GYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
GY+N+W HSM+E +EDG+VV++NG+ +S D+IMHCTG
Sbjct: 251 GYNNLWTHSMIESVHEDGSVVYQNGKTISVDIIMHCTG 288
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Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 8EC: .EC: -EC: .EC: - |
| >sp|Q9FWW9|GSXL2_ARATH Flavin-containing monooxygenase FMO GS-OX-like 2 OS=Arabidopsis thaliana GN=At1g12200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (872), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 170/280 (60%), Positives = 215/280 (76%), Gaps = 6/280 (2%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
RHVAVIGAGAAGLV EL REGH+VVV E+G Q+GG W YTS+ E DPL +DP R VH
Sbjct: 12 RHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWAYTSQVEPDPLSLDPTRPVVH 71
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SSLY+SLR N+PRE MGF +PF R ++GS D RR+P H EVL YL++FA+EF ++++V
Sbjct: 72 SSLYRSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTEVLAYLRDFAKEFDIEEMV 131
Query: 123 RLHTEVLNARLV-----ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
R TEV+ A V E KW+V+SR D VV+E +DAVVVCNGH++ PR A + GID
Sbjct: 132 RFETEVVKAEQVAAEGEERGKWRVESRSSDGVVDE-IYDAVVVCNGHYTEPRHALITGID 190
Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
SWPGKQ+HSHNYR+P+ F+DQVVI+IG ASG+DI RD+A AKEVH++SRS + +T+EK
Sbjct: 191 SWPGKQIHSHNYRVPDQFKDQVVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPDTYEK 250
Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
GY+N+WLHS ++ A EDG+VVF NG+ + AD IMHCTG
Sbjct: 251 LTGYENLWLHSTIQIAREDGSVVFENGKTIYADTIMHCTG 290
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Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q9C8U0|GSXL5_ARATH Flavin-containing monooxygenase FMO GS-OX-like 5 OS=Arabidopsis thaliana GN=At1g63370 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 339 bits (870), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 162/278 (58%), Positives = 210/278 (75%), Gaps = 5/278 (1%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
HVAVIGAG AGLV EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R VHS
Sbjct: 12 HVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHS 71
Query: 64 SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
S+Y+SLR+N RE G++ +PFV R+ S D RR+P H EVL YL++FA+EFG++++VR
Sbjct: 72 SVYRSLRINGTRECTGYRDFPFVVRS-GVSRDRRRFPSHGEVLAYLKDFAKEFGIEEMVR 130
Query: 124 LHTEVLNARLVESN---KWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSW 179
TEV+ KW+++S +K+ V +E +DAVVVCNGH+ PRLAQ+PGI SW
Sbjct: 131 FETEVVKVSPAAEEGIGKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSW 190
Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP 239
PGK+MHSHNYRIP PF+D+V +LIG+ +S DI RD+A AKEVH+A RS +T KQ
Sbjct: 191 PGKEMHSHNYRIPEPFRDKVAVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQT 250
Query: 240 GYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
GY+N+W HSM+E +EDG+VV++NG+ +S D+IMHCTG
Sbjct: 251 GYNNLWTHSMIESVHEDGSVVYQNGKTISVDIIMHCTG 288
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Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|A8MRX0|GSOX5_ARATH Flavin-containing monooxygenase FMO GS-OX5 OS=Arabidopsis thaliana GN=FMOGS-OX5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 338 bits (866), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 168/275 (61%), Positives = 214/275 (77%), Gaps = 2/275 (0%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
+VAVIGAGAAGLV EL RE HTVVV+E+ +VGG W+YT +E DPL +DPNR VHS
Sbjct: 12 NVAVIGAGAAGLVAARELRRENHTVVVFERDSKVGGLWVYTPNSEPDPLSLDPNRTIVHS 71
Query: 64 SLYKSLRVNLPRELMGFQAYPFVARNYEG-SVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
S+Y SLR NLPRE MG++ +PFV R + S D RRYP H EVL YL++FAREF + ++V
Sbjct: 72 SVYDSLRTNLPRECMGYRDFPFVPRPEDDESRDSRRYPSHREVLAYLEDFAREFKLVEMV 131
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
R TEV+ E KW+V+S+ D + ++E FDAVVVCNGH++ PR+A VPGIDSWPGK
Sbjct: 132 RFKTEVVLVE-PEDKKWRVQSKNSDGISKDEIFDAVVVCNGHYTEPRVAHVPGIDSWPGK 190
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYD 242
Q+HSHNYR+P+ F+DQVV++IG++ASG DI RD+ G AKEVHIASRS +T+ K PG +
Sbjct: 191 QIHSHNYRVPDQFKDQVVVVIGNFASGADISRDITGVAKEVHIASRSNPSKTYSKLPGSN 250
Query: 243 NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
N+WLHSM+E +EDGT+VF+NG+VV AD I+HCTG
Sbjct: 251 NLWLHSMIESVHEDGTIVFQNGKVVQADTIVHCTG 285
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Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Specific for 8-methylthiooctyl (8-MTO) glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q9SXE1|GSOX3_ARATH Flavin-containing monooxygenase FMO GS-OX3 OS=Arabidopsis thaliana GN=FMOGS-OX3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (863), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 150/276 (54%), Positives = 214/276 (77%), Gaps = 1/276 (0%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+HVAVIGAG AGL+ EL REGH+VVV+E+ +QVGG W+YT +++SDPL +DP R VH
Sbjct: 11 KHVAVIGAGPAGLITSRELRREGHSVVVFEREKQVGGLWVYTPKSDSDPLSLDPTRSKVH 70
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SS+Y+SLR N+PRE MG + +PF+ R + S D RRYP H EVL Y+Q+FAREF +++++
Sbjct: 71 SSIYESLRTNVPRESMGVRDFPFLPRFDDESRDARRYPNHREVLAYIQDFAREFKIEEMI 130
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
R TEV+ V++ W+V+S+ +E+E +DAVVVCNGH++ P +A +PGI SWPGK
Sbjct: 131 RFETEVVRVEPVDNGNWRVQSKNSGGFLEDEIYDAVVVCNGHYTEPNIAHIPGIKSWPGK 190
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK-QPGY 241
Q+HSHNYR+P+PF+++VV++IG++ASG DI RD+A AKEVHIASR+ T+EK
Sbjct: 191 QIHSHNYRVPDPFENEVVVVIGNFASGADISRDIAKVAKEVHIASRAREPHTYEKISVPQ 250
Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
+N+W+HS ++ +EDG++VF+NG+V+ AD I++CTG
Sbjct: 251 NNLWMHSEIDTTHEDGSIVFKNGKVIFADSIVYCTG 286
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Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Prefers probably short-chain methylthioalkyl glucosinolates in cv. Landsberg erecta. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q9SS04|GSOX1_ARATH Flavin-containing monooxygenase FMO GS-OX1 OS=Arabidopsis thaliana GN=FMOGS-OX1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 158/276 (57%), Positives = 211/276 (76%), Gaps = 2/276 (0%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+HVAVIGAGAAGLV EL REGHTVVV+++ +QVGG W Y+S+ +SDPL +D R VH
Sbjct: 11 KHVAVIGAGAAGLVTARELRREGHTVVVFDREKQVGGLWNYSSKADSDPLSLDTTRTIVH 70
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
+S+Y+SLR NLPRE MGF +PFV R ++ S D RRYP H EVL YLQ+FAREF ++++V
Sbjct: 71 TSIYESLRTNLPRECMGFTDFPFVPRIHDISRDSRRYPSHREVLAYLQDFAREFKIEEMV 130
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
R TEV+ V + KW V+S+ E FDAVVVC+GHF+ P +A +PGI SWPGK
Sbjct: 131 RFETEVVCVEPV-NGKWSVRSKNSVGFAAHEIFDAVVVCSGHFTEPNVAHIPGIKSWPGK 189
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
Q+HSHNYR+P PF ++VV++IG+YASG DI RD+A AKEVHIASR+ +T++K P
Sbjct: 190 QIHSHNYRVPGPFNNEVVVVIGNYASGADISRDIAKVAKEVHIASRASESDTYQKLPVPQ 249
Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
+N+W+HS ++ A++DG+++F+NG+VV AD I+HCTG
Sbjct: 250 NNLWVHSEIDFAHQDGSILFKNGKVVYADTIVHCTG 285
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Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Able to S-oxygenate both desulfo- and intact 4-methylthiobutyl glucosinolates, but no activity with methionine, dihomomethionine or 5-methylthiopentaldoxime. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q9FWW6|GSXL1_ARATH Flavin-containing monooxygenase FMO GS-OX-like 1 OS=Arabidopsis thaliana GN=At1g12160 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (851), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/277 (58%), Positives = 206/277 (74%), Gaps = 7/277 (2%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
RHVAVIG GAAGLV EL REGHTV+ +E+ + VGG W+YT +SD + VDP+R VH
Sbjct: 10 RHVAVIGLGAAGLVAVRELRREGHTVIGFEREKHVGGLWVYTDRVDSDSVSVDPDRTIVH 69
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SS+Y+SLR NLPRE MG+ +PFV R+ +G D RRYP H EVL YLQ+FA+EF ++ ++
Sbjct: 70 SSIYQSLRTNLPRECMGYSDFPFVTRSSDG--DPRRYPDHREVLMYLQDFAKEFKIEDMI 127
Query: 123 RLHTEVLNARLVESN--KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWP 180
R TEVL N KW+V+ + + V EE FDAVVVCNGHF+ PRLA +PGI+SWP
Sbjct: 128 RFETEVLCVEPSPENNRKWRVQFKSSNGVSGEEIFDAVVVCNGHFTEPRLAHIPGIESWP 187
Query: 181 GKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPG 240
GKQ+HSHNYRIP+PF+D+VVI+IG ASG DI D+A AKEVHI+S+ VA +++
Sbjct: 188 GKQIHSHNYRIPDPFKDEVVIVIGSQASGNDISTDIATIAKEVHISSKMVASDSYG---C 244
Query: 241 YDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
YDN+ +H + RA EDG+VVFRNG+VV AD I+HCTG
Sbjct: 245 YDNLRIHPTIYRAREDGSVVFRNGKVVFADAIVHCTG 281
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Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q94BV5|GSXL4_ARATH Flavin-containing monooxygenase FMO GS-OX-like 4 OS=Arabidopsis thaliana GN=At1g62600 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (840), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 214/279 (76%), Gaps = 5/279 (1%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
HVAVIGAGAAGLV EL REGH+VVV+E+ +QVGG+WIYT E DPL VDP R VHS
Sbjct: 12 HVAVIGAGAAGLVAARELRREGHSVVVFERQKQVGGTWIYTDHIEPDPLSVDPTRSVVHS 71
Query: 64 SLYKSLRVNLPRELMGFQAYPFVAR-NYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
S+Y SLR NLPRE MG++ +PFV R + S D RR+P H EVL YLQ+FA+EF +++++
Sbjct: 72 SVYGSLRTNLPRECMGYRDFPFVIRSDVSESRDPRRFPSHGEVLAYLQDFAKEFAIEEMI 131
Query: 123 RLHTEVLN---ARLVESNKWKVKSRKKDD-VVEEETFDAVVVCNGHFSVPRLAQVPGIDS 178
R T V+ A S KW+++S +K+ V+ +E +DAVVVCNGH+ PR A++PGI S
Sbjct: 132 RFDTAVVKVAPAAEEGSGKWRIESTEKEKKVLRDEIYDAVVVCNGHYIEPRHAEIPGISS 191
Query: 179 WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238
WPGK+MHSHNYRIP PF+DQVV+LIG+ AS DI RD+A AKEVH+A RS A +T+ ++
Sbjct: 192 WPGKEMHSHNYRIPEPFRDQVVVLIGNSASADDISRDIARVAKEVHVACRSNAADTYIER 251
Query: 239 PGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
PGY N+W+HSM+E +EDG+VVF+NG+ +S DVIMHCTG
Sbjct: 252 PGYSNLWMHSMIESVHEDGSVVFQNGKTISVDVIMHCTG 290
|
Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q93Y23|GSOX4_ARATH Flavin-containing monooxygenase FMO GS-OX4 OS=Arabidopsis thaliana GN=FMOGS-OX4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (836), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 162/276 (58%), Positives = 214/276 (77%), Gaps = 2/276 (0%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+HVAVIGAGAAGLV EL REGHTVVV ++ +QVGG W+YT ETESD LG+DP R VH
Sbjct: 11 QHVAVIGAGAAGLVAARELRREGHTVVVLDREKQVGGLWVYTPETESDELGLDPTRPIVH 70
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SS+YKSLR NLPRE MG++ +PFV R + S D RRYP H EVL YLQ+FA EF +++++
Sbjct: 71 SSVYKSLRTNLPRECMGYKDFPFVPRGDDPSRDSRRYPSHREVLAYLQDFATEFNIEEMI 130
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
R TEVL V + KW+V+S+ +E +DAVV+C GHF+ P +AQ+PGI+SWPG+
Sbjct: 131 RFETEVLRVEPV-NGKWRVQSKTGGGFSNDEIYDAVVMCCGHFAEPNIAQIPGIESWPGR 189
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
Q HSH+YR+P+PF+D+VV++IG++ASG DI RD++ AKEVHIASR+ T EK+P
Sbjct: 190 QTHSHSYRVPDPFKDEVVVVIGNFASGADISRDISKVAKEVHIASRASKSNTFEKRPVPN 249
Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
+N+W+HS ++ A+EDGT+VF+NG+VV AD I+HCTG
Sbjct: 250 NNLWMHSEIDTAHEDGTIVFKNGKVVHADTIVHCTG 285
|
Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
| >sp|Q94K43|GSOX2_ARATH Flavin-containing monooxygenase FMO GS-OX2 OS=Arabidopsis thaliana GN=FMOGS-OX2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 314 bits (805), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 160/276 (57%), Positives = 210/276 (76%), Gaps = 2/276 (0%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+HV VIGAGAAGLV EL REGHTVVV E+ ++VGG WIY+ + ESDPL +DP R VH
Sbjct: 11 QHVVVIGAGAAGLVAARELSREGHTVVVLEREKEVGGLWIYSPKAESDPLSLDPTRSIVH 70
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SS+Y+SLR NLPRE MGF +PFV R + S D RRYP H EVL YLQ+FAREF ++++V
Sbjct: 71 SSVYESLRTNLPRECMGFTDFPFVPRFDDESRDSRRYPSHMEVLAYLQDFAREFNLEEMV 130
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
R EV+ V + KW+V S+ V +E FDAVVVC+GH++ P +A +PGI SWPGK
Sbjct: 131 RFEIEVVRVEPV-NGKWRVWSKTSGGVSHDEIFDAVVVCSGHYTEPNVAHIPGIKSWPGK 189
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
Q+HSHNYR+P PF+++VV++IG++ASG DI RD+A AKEVHIASR+ +T+EK P
Sbjct: 190 QIHSHNYRVPGPFENEVVVVIGNFASGADISRDIAKVAKEVHIASRASEFDTYEKLPVPR 249
Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
+N+W+HS ++ A EDG++VF+NG+VV AD I++CTG
Sbjct: 250 NNLWIHSEIDTAYEDGSIVFKNGKVVYADSIVYCTG 285
|
Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 354 | ||||||
| 255577823 | 423 | dimethylaniline monooxygenase, putative | 0.774 | 0.647 | 0.65 | 1e-103 | |
| 224125168 | 459 | predicted protein [Populus trichocarpa] | 0.774 | 0.596 | 0.637 | 1e-103 | |
| 224123136 | 464 | predicted protein [Populus trichocarpa] | 0.771 | 0.588 | 0.632 | 2e-94 | |
| 237682456 | 459 | flavin-monooxygenase [Brassica rapa subs | 0.771 | 0.594 | 0.614 | 1e-92 | |
| 116293735 | 461 | FMO-like protein [Eutrema halophilum] | 0.776 | 0.596 | 0.574 | 2e-92 | |
| 297840275 | 461 | flavin-containing monooxygenase family p | 0.774 | 0.594 | 0.583 | 2e-92 | |
| 297840265 | 450 | flavin-containing monooxygenase family p | 0.774 | 0.608 | 0.605 | 3e-92 | |
| 237682454 | 461 | flavin-monooxygenase [Brassica rapa subs | 0.774 | 0.594 | 0.576 | 1e-91 | |
| 297844078 | 465 | flavin-containing monooxygenase family p | 0.774 | 0.589 | 0.617 | 1e-91 | |
| 224125164 | 452 | predicted protein [Populus trichocarpa] | 0.774 | 0.606 | 0.607 | 2e-91 |
| >gi|255577823|ref|XP_002529785.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223530729|gb|EEF32599.1| dimethylaniline monooxygenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/280 (65%), Positives = 225/280 (80%), Gaps = 6/280 (2%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
RHVAVIGAGA+GLV EL REGH VVV+E+ Q+GG+W+Y E DPLG+DPNR +H
Sbjct: 8 RHVAVIGAGASGLVTARELRREGHEVVVFERQSQIGGTWVYDPRVEPDPLGLDPNRTIIH 67
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SSLYKSLR NLPRELMGF+ YPF+ +N +G D RRYP H EVL YLQ+FA+EF ++++V
Sbjct: 68 SSLYKSLRTNLPRELMGFKDYPFIPKN-DGMRDPRRYPCHREVLLYLQDFAKEFEIEEMV 126
Query: 123 RLHTEVLNARLVE-SNKWKVKSRKKD-DV---VEEETFDAVVVCNGHFSVPRLAQVPGID 177
R TEV+ LVE SNKWKV+S+KK D+ +E +DAVVVCNGHF+ PR+A +PGI
Sbjct: 127 RFGTEVVYVELVEDSNKWKVRSKKKRLDLYFDFSDEVYDAVVVCNGHFTEPRVADIPGIS 186
Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
SWPGKQMH HNYR+P PF+D+VVILIG S D+ R++AG AKEVH+ASRSVADET+E+
Sbjct: 187 SWPGKQMHCHNYRVPEPFKDRVVILIGCATSATDLSREIAGVAKEVHVASRSVADETYEE 246
Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
QPGYDN+WLHSM+E +EDG+VVFR+GRVV AD+I+ CTG
Sbjct: 247 QPGYDNIWLHSMIECVHEDGSVVFRSGRVVHADIILQCTG 286
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125168|ref|XP_002329910.1| predicted protein [Populus trichocarpa] gi|222871147|gb|EEF08278.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/287 (63%), Positives = 225/287 (78%), Gaps = 13/287 (4%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
RHVAVIGAGAAGLV EL REGH VVV+E+ QVGG+W+Y E DPL +DPNR +H
Sbjct: 12 RHVAVIGAGAAGLVSARELRREGHDVVVFERDNQVGGTWVYNPRVEPDPLSLDPNRRIIH 71
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SSLY SLR NLPRE+MGF+ YPF+A+N + D RR+PGH EVL YLQ+FA EFG++++V
Sbjct: 72 SSLYSSLRTNLPREVMGFKDYPFIAKN-DKKRDQRRFPGHREVLLYLQDFASEFGIEEMV 130
Query: 123 RLHTEVLNARLVESN--KWKVKSRKK---DDV-------VEEETFDAVVVCNGHFSVPRL 170
R TEV++ VE N KW V+S++K DD V+EE +DAVV+CNGH++ PR+
Sbjct: 131 RFDTEVVHVGPVEDNIGKWIVRSKRKISDDDREVSFGFDVDEEIYDAVVICNGHYTEPRI 190
Query: 171 AQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
AQ+PGI SWPGKQMHSHNYR P FQDQV ILIG AS DI R++AG AKEVH+ASRSV
Sbjct: 191 AQIPGISSWPGKQMHSHNYRTPEGFQDQVAILIGSSASSDDISREIAGVAKEVHVASRSV 250
Query: 231 ADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
ADET+++QPGYDNMWLHSM+E ++DG+V+FRNGRVV AD+I+HCTG
Sbjct: 251 ADETYQEQPGYDNMWLHSMIESVHDDGSVIFRNGRVVVADIILHCTG 297
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123136|ref|XP_002319003.1| predicted protein [Populus trichocarpa] gi|222857379|gb|EEE94926.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 179/283 (63%), Positives = 219/283 (77%), Gaps = 10/283 (3%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
HVAVIGAGAAGLV EL REGH VVV+EK +QVGG W+Y E DPLG+D R VHS
Sbjct: 12 HVAVIGAGAAGLVAARELHREGHKVVVFEKDDQVGGLWMYDPRVEPDPLGLDLTRPVVHS 71
Query: 64 SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
SLY+SLR NLPRE MGF YPFV R EG D RR+PGH EVL YLQ++AREFG++++VR
Sbjct: 72 SLYESLRTNLPRETMGFMDYPFVTREGEGR-DPRRFPGHREVLMYLQDYAREFGIEEMVR 130
Query: 124 LHTEVLNARLVESNKWKVKSRKK--------DDVVEEETFDAVVVCNGHFSVPRLAQVPG 175
EV+N +++S KWKVKS++K DD + E FDAVVVC GH++ PR+A++PG
Sbjct: 131 FGCEVVNVEMIDSGKWKVKSKRKRLDDNDRGDDFADHEDFDAVVVCVGHYTQPRIAEIPG 190
Query: 176 IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS-VADET 234
I+ WPGKQ+HSHNYRIP PF+DQ++ILIG AS DI ++AG AKEVHIA RS V D+T
Sbjct: 191 INLWPGKQIHSHNYRIPEPFRDQIIILIGASASAADISVEIAGLAKEVHIARRSAVDDDT 250
Query: 235 HEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
+EK+PGYDN+WLHS +ERA EDGTV+FR+G V+ ADVI+HCTG
Sbjct: 251 YEKKPGYDNIWLHSTIERACEDGTVIFRDGSVILADVILHCTG 293
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|237682456|gb|ACR10275.1| flavin-monooxygenase [Brassica rapa subsp. pekinensis] | Back alignment and taxonomy information |
|---|
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/275 (61%), Positives = 215/275 (78%), Gaps = 2/275 (0%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
HVAVIGAGAAGLV EL RE H+VVV+E+ +VGG W+YT ++E DPL +DPNR VHS
Sbjct: 12 HVAVIGAGAAGLVAARELRRESHSVVVFERNTEVGGLWVYTPQSEPDPLSLDPNRTVVHS 71
Query: 64 SLYKSLRVNLPRELMGFQAYPFVAR-NYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
S+Y SLR NLPRE MG+ +PFV R ++ S D RRYP H EVL YL++FAREF + ++V
Sbjct: 72 SVYDSLRTNLPRECMGYSDFPFVPRPEHDESRDPRRYPTHREVLAYLRDFAREFKLVEMV 131
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
R TEV+ + KWK++SR D V +E FD+VVVCNGH++ PR+AQ+PGID WPGK
Sbjct: 132 RFGTEVVRVEQ-DGRKWKIRSRNSDGVSRDEIFDSVVVCNGHYTEPRVAQIPGIDQWPGK 190
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYD 242
Q+HSHNYR+P+PF+DQVV++IG++ASG DI RDL G AKEVHIA+RS ET+EK PG D
Sbjct: 191 QLHSHNYRVPDPFKDQVVVVIGNFASGSDISRDLTGVAKEVHIAARSKPSETYEKLPGAD 250
Query: 243 NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
N+WLH M+E A +DG++VF+NG+VV AD I+HCTG
Sbjct: 251 NLWLHPMIETARKDGSIVFKNGKVVQADTIVHCTG 285
|
Source: Brassica rapa subsp. pekinensis Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116293735|gb|ABJ98059.1| FMO-like protein [Eutrema halophilum] | Back alignment and taxonomy information |
|---|
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 159/277 (57%), Positives = 219/277 (79%), Gaps = 2/277 (0%)
Query: 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV 61
++HVAVIGAGA+GLV EL REGHT VV+++ +QVGG WIY+ + ESDPLG+DP R V
Sbjct: 10 YQHVAVIGAGASGLVAARELRREGHTAVVFDREKQVGGLWIYSPKAESDPLGLDPTRSIV 69
Query: 62 HSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQV 121
HSS+Y+SLR NLPRE MGF+ +PFV R + + D RRYP H+EVL YL++FAREF ++++
Sbjct: 70 HSSVYESLRTNLPRECMGFRDFPFVPRGDDVARDPRRYPSHKEVLAYLEDFAREFNIEEM 129
Query: 122 VRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPG 181
+R TEV+ V + KW+V+S+ ++E FDAVVVC+GHF+ P +AQ+ GI+SWPG
Sbjct: 130 IRFETEVVRVEPV-NGKWRVRSKNSGGFSDDEIFDAVVVCSGHFTEPSVAQINGIESWPG 188
Query: 182 KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGY 241
KQ+HSHNYR P+PF+D+VV++IG++ASG DI RD++ AKEVHIASR+ +T+EK G+
Sbjct: 189 KQIHSHNYRRPDPFKDEVVVVIGNFASGADISRDISKVAKEVHIASRAGGPDTYEKLAGH 248
Query: 242 -DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
+N+W+HS ++ A EDG++VF+NG+VV AD I+HCTG
Sbjct: 249 KNNLWMHSQIDIAREDGSIVFQNGKVVHADTIVHCTG 285
|
Source: Eutrema halophilum Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297840275|ref|XP_002888019.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297333860|gb|EFH64278.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 161/276 (58%), Positives = 219/276 (79%), Gaps = 2/276 (0%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+HVAVIGAGAAGL+ ELLREGHTVVV+E+ ++VGG WIY+ +TESDPL +DPNR VH
Sbjct: 11 QHVAVIGAGAAGLITARELLREGHTVVVFEREKEVGGLWIYSPKTESDPLSLDPNRSIVH 70
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SS+Y+SLR N+PRE MG + +PF+ R + S D RRYP H EVL YLQ+FAREF ++ +V
Sbjct: 71 SSVYESLRTNVPRESMGVRDFPFLPRFDDISRDPRRYPRHREVLAYLQDFAREFEIEDMV 130
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
R TEV+ V+ KW V+S+K D +E FDAVVVC+GH++ P +A +PGI+SWPGK
Sbjct: 131 RFKTEVVRVEPVDG-KWSVQSKKSGDCSNDEIFDAVVVCSGHYTEPNVAHIPGINSWPGK 189
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
Q+HSHNYR+P PF+++VV++IG++ASG DI RD+A AKEVHIASR+ +T++K P +
Sbjct: 190 QIHSHNYRVPGPFENEVVVVIGNFASGADISRDIAQVAKEVHIASRASESDTYKKLPVPH 249
Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
+N+W+HS ++ A+EDG++VF+NG+VV AD I++CTG
Sbjct: 250 NNLWIHSEIDSAHEDGSIVFKNGKVVYADSIVYCTG 285
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297840265|ref|XP_002888014.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297333855|gb|EFH64273.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 212/279 (75%), Gaps = 5/279 (1%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
HVAVIGAG AGLV EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R VHS
Sbjct: 12 HVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHS 71
Query: 64 SLYKSLRVNLPRELMGFQAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
S+Y+SLR+N RE G++ YPFV R+ S D RRYP H EVL YL++FAREFG++++V
Sbjct: 72 SVYRSLRINGTRECTGYRDYPFVVRSGVSESRDPRRYPSHGEVLAYLKDFAREFGIEEMV 131
Query: 123 RLHTEVLN---ARLVESNKWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDS 178
R TEV+ A E KW+V+S +K+ V +E +DAVVVCNGH+ PRLA++PGI S
Sbjct: 132 RFETEVVKVPPAAEGEIGKWRVESTEKEKRVRRDEIYDAVVVCNGHYVEPRLAEIPGISS 191
Query: 179 WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238
WPGK+MHSHNY IP PF+DQVV+LIG+ +S DI RD+A FAKEVH+A RS +T KQ
Sbjct: 192 WPGKEMHSHNYCIPEPFKDQVVVLIGNSSSAEDISRDIATFAKEVHVACRSNPADTFIKQ 251
Query: 239 PGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
GY+N+W HS +E +EDG+VVF+NG+ +S D+IMHCTG
Sbjct: 252 TGYNNLWTHSSIECVHEDGSVVFQNGKTISVDIIMHCTG 290
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|237682454|gb|ACR10274.1| flavin-monooxygenase [Brassica rapa subsp. pekinensis] | Back alignment and taxonomy information |
|---|
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 159/276 (57%), Positives = 215/276 (77%), Gaps = 2/276 (0%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+HVAVIGAGA+GL+ EL REGHTVVV+E+ +QVGG WIY+ ++ESDPLG+DP R VH
Sbjct: 11 KHVAVIGAGASGLIAARELHREGHTVVVFEREKQVGGLWIYSPKSESDPLGLDPTRPIVH 70
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SS+Y+SLR NLPRE MGF+ +PFV + S D RRYP H EVL YLQ+FAREF ++++V
Sbjct: 71 SSVYESLRTNLPRECMGFRDFPFVPCVDDFSRDSRRYPSHREVLAYLQDFAREFKIEEMV 130
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
R TEV+ V+ KW+V+S+ DD+ E+E FDAVVVC+GH++ P +A +PGI SWPGK
Sbjct: 131 RFETEVVRVEPVD-GKWRVRSKNSDDLSEDEIFDAVVVCSGHYTEPYVAHIPGIKSWPGK 189
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK-QPGY 241
Q+HSHNYR+P PF+++VV++IG++ASG DI RD+A AKEVH+ASR T+EK
Sbjct: 190 QIHSHNYRVPGPFKNEVVVVIGNFASGADISRDVAKVAKEVHVASRGSEASTYEKLSVPT 249
Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
+N+W+HS +E A +DG++VF+NG+ V AD +++CTG
Sbjct: 250 NNLWIHSEIETACDDGSIVFKNGKAVHADTVVYCTG 285
|
Source: Brassica rapa subsp. pekinensis Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844078|ref|XP_002889920.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297335762|gb|EFH66179.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 173/280 (61%), Positives = 213/280 (76%), Gaps = 6/280 (2%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
RHVAVIGAGAAGLV EL REGH+VVV E+G Q+GG W+YTSE E DPL +DP R VH
Sbjct: 12 RHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWVYTSEVEPDPLSLDPTRPVVH 71
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SSLYKSLR N+PRE MGF +PF R ++GS D RR+P H EVL YL++FA+EF ++++V
Sbjct: 72 SSLYKSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTEVLAYLRDFAKEFDIEEMV 131
Query: 123 RLHTEVLNARLV-----ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
R TEV+ A + E KWKV+SR D + E +DAVVVCNGH++ PR A + GID
Sbjct: 132 RFETEVVKAEQMAAEGEERGKWKVESRSSDGIANE-IYDAVVVCNGHYTEPRHALITGID 190
Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
SWPGKQ+HSHNYR+P+ F+DQVVI+IG ASG+DI RD+A AKEVH++SRS + ET+EK
Sbjct: 191 SWPGKQIHSHNYRVPDQFKDQVVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPETYEK 250
Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
GYDN+WLHS +E A EDG+VVF N + V AD IMHCTG
Sbjct: 251 LTGYDNLWLHSTIEIAREDGSVVFENRKTVYADTIMHCTG 290
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125164|ref|XP_002329909.1| predicted protein [Populus trichocarpa] gi|222871146|gb|EEF08277.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 170/280 (60%), Positives = 221/280 (78%), Gaps = 6/280 (2%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
RHVAVIGAGAAGLV EL REGH VVV+EK Q+GG+W+YT + E+DPLG+DP R+ VH
Sbjct: 12 RHVAVIGAGAAGLVAARELRREGHQVVVFEKDSQIGGTWVYTPQVETDPLGLDPTRHIVH 71
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
+SLYKSLR NLPRE MGF YPFV R EGS D RR+PGH EVL+YLQ+FAREFG++++V
Sbjct: 72 TSLYKSLRTNLPRESMGFMDYPFVTRAGEGS-DPRRFPGHAEVLKYLQDFAREFGIEEMV 130
Query: 123 RLHTEVLNARLVESNKWKVKSRK-----KDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
R EV++ +V++ K KVK ++ DD + +E FDAVVVCNGHF+ PR+A++PGI+
Sbjct: 131 RFECEVVSVEMVDNEKLKVKCKRMRPDGGDDDLLDEVFDAVVVCNGHFTYPRIAEIPGIN 190
Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
WPG Q+HSHNYR P F+D+VVILIG AS +D+ ++ G AKEVHIASRSVA++T+EK
Sbjct: 191 LWPGMQIHSHNYRTPELFKDKVVILIGSSASAIDLSLEIGGIAKEVHIASRSVANDTYEK 250
Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
+ DN+WLHSM++ A++DG+V FR+G + AD+I+HCTG
Sbjct: 251 RAECDNIWLHSMIKSAHKDGSVAFRDGNTIVADIILHCTG 290
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 354 | ||||||
| TAIR|locus:2201971 | 459 | FMO GS-OX5 "flavin-monooxygena | 0.720 | 0.555 | 0.599 | 1.3e-84 | |
| TAIR|locus:2201991 | 465 | FMO "AT1G12200" [Arabidopsis t | 0.768 | 0.584 | 0.561 | 4.4e-84 | |
| TAIR|locus:2203921 | 452 | AT1G62600 "AT1G62600" [Arabido | 0.723 | 0.566 | 0.582 | 1.2e-81 | |
| TAIR|locus:2203901 | 461 | FMO GS-OX4 "AT1G62570" [Arabid | 0.768 | 0.590 | 0.540 | 2.5e-81 | |
| TAIR|locus:2203911 | 464 | NOGC1 "AT1G62580" [Arabidopsis | 0.720 | 0.549 | 0.569 | 4.1e-81 | |
| TAIR|locus:2203866 | 450 | AT1G62620 "AT1G62620" [Arabido | 0.720 | 0.566 | 0.576 | 2.2e-80 | |
| TAIR|locus:2031336 | 450 | AT1G63370 "AT1G63370" [Arabido | 0.720 | 0.566 | 0.573 | 4.7e-80 | |
| TAIR|locus:2203891 | 462 | FMO GS-OX3 "AT1G62560" [Arabid | 0.723 | 0.554 | 0.533 | 3.3e-79 | |
| TAIR|locus:2009754 | 459 | FMO GS-OX1 "AT1G65860" [Arabid | 0.768 | 0.592 | 0.525 | 1.8e-78 | |
| TAIR|locus:2203871 | 457 | FMO GS-OX2 "AT1G62540" [Arabid | 0.720 | 0.557 | 0.568 | 3.8e-78 |
| TAIR|locus:2201971 FMO GS-OX5 "flavin-monooxygenase glucosinolate S-oxygenase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 154/257 (59%), Positives = 199/257 (77%)
Query: 20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
EL RE HTVVV+E+ +VGG W+YT +E DPL +DPNR VHSS+Y SLR NLPRE MG
Sbjct: 28 ELRRENHTVVVFERDSKVGGLWVYTPNSEPDPLSLDPNRTIVHSSVYDSLRTNLPRECMG 87
Query: 80 FQAYPFVARNYEG-SVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK 138
++ +PFV R + S D RRYP H EVL YL++FAREF + ++VR TEV+ E K
Sbjct: 88 YRDFPFVPRPEDDESRDSRRYPSHREVLAYLEDFAREFKLVEMVRFKTEVVLVE-PEDKK 146
Query: 139 WKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQ 198
W+V+S+ D + ++E FDAVVVCNGH++ PR+A VPGIDSWPGKQ+HSHNYR+P+ F+DQ
Sbjct: 147 WRVQSKNSDGISKDEIFDAVVVCNGHYTEPRVAHVPGIDSWPGKQIHSHNYRVPDQFKDQ 206
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGT 258
VV++IG++ASG DI RD+ G AKEVHIASRS +T+ K PG +N+WLHSM+E +EDGT
Sbjct: 207 VVVVIGNFASGADISRDITGVAKEVHIASRSNPSKTYSKLPGSNNLWLHSMIESVHEDGT 266
Query: 259 VVFRNGRVVSADVIMHC 275
+VF+NG+VV AD I+HC
Sbjct: 267 IVFQNGKVVQADTIVHC 283
|
|
| TAIR|locus:2201991 FMO "AT1G12200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 156/278 (56%), Positives = 201/278 (72%)
Query: 3 RHXXXXXXXXXXXXXXHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
RH EL REGH+VVV E+G Q+GG W YTS+ E DPL +DP R VH
Sbjct: 12 RHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWAYTSQVEPDPLSLDPTRPVVH 71
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SSLY+SLR N+PRE MGF +PF R ++GS D RR+P H EVL YL++FA+EF ++++V
Sbjct: 72 SSLYRSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTEVLAYLRDFAKEFDIEEMV 131
Query: 123 RLHTEVLNARLV-----ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
R TEV+ A V E KW+V+SR D VV+E +DAVVVCNGH++ PR A + GID
Sbjct: 132 RFETEVVKAEQVAAEGEERGKWRVESRSSDGVVDE-IYDAVVVCNGHYTEPRHALITGID 190
Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
SWPGKQ+HSHNYR+P+ F+DQVVI+IG ASG+DI RD+A AKEVH++SRS + +T+EK
Sbjct: 191 SWPGKQIHSHNYRVPDQFKDQVVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPDTYEK 250
Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHC 275
GY+N+WLHS ++ A EDG+VVF NG+ + AD IMHC
Sbjct: 251 LTGYENLWLHSTIQIAREDGSVVFENGKTIYADTIMHC 288
|
|
| TAIR|locus:2203921 AT1G62600 "AT1G62600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 152/261 (58%), Positives = 200/261 (76%)
Query: 20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
EL REGH+VVV+E+ +QVGG+WIYT E DPL VDP R VHSS+Y SLR NLPRE MG
Sbjct: 28 ELRREGHSVVVFERQKQVGGTWIYTDHIEPDPLSVDPTRSVVHSSVYGSLRTNLPRECMG 87
Query: 80 FQAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLN-ARLVE-- 135
++ +PFV R+ S D RR+P H EVL YLQ+FA+EF +++++R T V+ A E
Sbjct: 88 YRDFPFVIRSDVSESRDPRRFPSHGEVLAYLQDFAKEFAIEEMIRFDTAVVKVAPAAEEG 147
Query: 136 SNKWKVKSRKKDD-VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP 194
S KW+++S +K+ V+ +E +DAVVVCNGH+ PR A++PGI SWPGK+MHSHNYRIP P
Sbjct: 148 SGKWRIESTEKEKKVLRDEIYDAVVVCNGHYIEPRHAEIPGISSWPGKEMHSHNYRIPEP 207
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN 254
F+DQVV+LIG+ AS DI RD+A AKEVH+A RS A +T+ ++PGY N+W+HSM+E +
Sbjct: 208 FRDQVVVLIGNSASADDISRDIARVAKEVHVACRSNAADTYIERPGYSNLWMHSMIESVH 267
Query: 255 EDGTVVFRNGRVVSADVIMHC 275
EDG+VVF+NG+ +S DVIMHC
Sbjct: 268 EDGSVVFQNGKTISVDVIMHC 288
|
|
| TAIR|locus:2203901 FMO GS-OX4 "AT1G62570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 148/274 (54%), Positives = 200/274 (72%)
Query: 3 RHXXXXXXXXXXXXXXHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+H EL REGHTVVV ++ +QVGG W+YT ETESD LG+DP R VH
Sbjct: 11 QHVAVIGAGAAGLVAARELRREGHTVVVLDREKQVGGLWVYTPETESDELGLDPTRPIVH 70
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SS+YKSLR NLPRE MG++ +PFV R + S D RRYP H EVL YLQ+FA EF +++++
Sbjct: 71 SSVYKSLRTNLPRECMGYKDFPFVPRGDDPSRDSRRYPSHREVLAYLQDFATEFNIEEMI 130
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
R TEVL V + KW+V+S+ +E +DAVV+C GHF+ P +AQ+PGI+SWPG+
Sbjct: 131 RFETEVLRVEPV-NGKWRVQSKTGGGFSNDEIYDAVVMCCGHFAEPNIAQIPGIESWPGR 189
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
Q HSH+YR+P+PF+D+VV++IG++ASG DI RD++ AKEVHIASR+ T EK+P
Sbjct: 190 QTHSHSYRVPDPFKDEVVVVIGNFASGADISRDISKVAKEVHIASRASKSNTFEKRPVPN 249
Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHC 275
+N+W+HS ++ A+EDGT+VF+NG+VV AD I+HC
Sbjct: 250 NNLWMHSEIDTAHEDGTIVFKNGKVVHADTIVHC 283
|
|
| TAIR|locus:2203911 NOGC1 "AT1G62580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 147/258 (56%), Positives = 187/258 (72%)
Query: 20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
EL REGH+VVV+E+G +GG W YT E DPL +DP R +HSSLY SLR +P+E MG
Sbjct: 29 ELRREGHSVVVFERGNHIGGVWAYTPNVEPDPLSIDPTRPVIHSSLYSSLRTIIPQECMG 88
Query: 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-- 137
F +PF R GS D RR+PGH EVL YL++F REF +++++R TEV+ N
Sbjct: 89 FTDFPFSTRLENGSRDPRRHPGHSEVLAYLRDFVREFKIEEMIRFETEVVRVEQAGENPK 148
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQD 197
KW+VKSR D+ +E +DAVVVCNGH++ PR A +PGID+WPGKQ+HSHNYR+P +D
Sbjct: 149 KWRVKSRNFGDI-SDEIYDAVVVCNGHYTEPRHALIPGIDTWPGKQIHSHNYRVPEQVKD 207
Query: 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDG 257
QVV++IG SG+DI RD+A KEVHI+SRS ET+EK PGYDN+WLHS +E EDG
Sbjct: 208 QVVVVIGSSVSGVDISRDIANVTKEVHISSRSTKPETYEKLPGYDNLWLHSNIETVREDG 267
Query: 258 TVVFRNGRVVSADVIMHC 275
+VVF+NG+ V AD IMHC
Sbjct: 268 SVVFKNGKTVYADTIMHC 285
|
|
| TAIR|locus:2203866 AT1G62620 "AT1G62620" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 150/260 (57%), Positives = 198/260 (76%)
Query: 20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R VHSS+Y+SLR+N RE G
Sbjct: 28 ELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHSSVYRSLRINGTRECTG 87
Query: 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR-LVESN- 137
++ +PFV R+ S D RR+P H EVL YL++FA+EFG++++VR TEV+ E
Sbjct: 88 YRDFPFVVRSGV-SRDPRRFPSHGEVLAYLKDFAKEFGIEEMVRFETEVVKVSPAAEEGI 146
Query: 138 -KWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF 195
KW+++S +K+ V +E +DAVVVCNGH+ PRLAQ+PGI SWPGK+MHSHNYRIP PF
Sbjct: 147 GKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSWPGKEMHSHNYRIPEPF 206
Query: 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANE 255
+D+VV+LIG+ +S DI RD+A AKEVH+A RS +T KQ GY+N+W HSM+E +E
Sbjct: 207 RDKVVVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQTGYNNLWTHSMIESVHE 266
Query: 256 DGTVVFRNGRVVSADVIMHC 275
DG+VV++NG+ +S D+IMHC
Sbjct: 267 DGSVVYQNGKTISVDIIMHC 286
|
|
| TAIR|locus:2031336 AT1G63370 "AT1G63370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
Identities = 149/260 (57%), Positives = 197/260 (75%)
Query: 20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R VHSS+Y+SLR+N RE G
Sbjct: 28 ELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHSSVYRSLRINGTRECTG 87
Query: 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR-LVESN- 137
++ +PFV R+ S D RR+P H EVL YL++FA+EFG++++VR TEV+ E
Sbjct: 88 YRDFPFVVRSGV-SRDRRRFPSHGEVLAYLKDFAKEFGIEEMVRFETEVVKVSPAAEEGI 146
Query: 138 -KWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF 195
KW+++S +K+ V +E +DAVVVCNGH+ PRLAQ+PGI SWPGK+MHSHNYRIP PF
Sbjct: 147 GKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSWPGKEMHSHNYRIPEPF 206
Query: 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANE 255
+D+V +LIG+ +S DI RD+A AKEVH+A RS +T KQ GY+N+W HSM+E +E
Sbjct: 207 RDKVAVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQTGYNNLWTHSMIESVHE 266
Query: 256 DGTVVFRNGRVVSADVIMHC 275
DG+VV++NG+ +S D+IMHC
Sbjct: 267 DGSVVYQNGKTISVDIIMHC 286
|
|
| TAIR|locus:2203891 FMO GS-OX3 "AT1G62560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
Identities = 137/257 (53%), Positives = 199/257 (77%)
Query: 20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
EL REGH+VVV+E+ +QVGG W+YT +++SDPL +DP R VHSS+Y+SLR N+PRE MG
Sbjct: 28 ELRREGHSVVVFEREKQVGGLWVYTPKSDSDPLSLDPTRSKVHSSIYESLRTNVPRESMG 87
Query: 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW 139
+ +PF+ R + S D RRYP H EVL Y+Q+FAREF +++++R TEV+ V++ W
Sbjct: 88 VRDFPFLPRFDDESRDARRYPNHREVLAYIQDFAREFKIEEMIRFETEVVRVEPVDNGNW 147
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQV 199
+V+S+ +E+E +DAVVVCNGH++ P +A +PGI SWPGKQ+HSHNYR+P+PF+++V
Sbjct: 148 RVQSKNSGGFLEDEIYDAVVVCNGHYTEPNIAHIPGIKSWPGKQIHSHNYRVPDPFENEV 207
Query: 200 VILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK-QPGYDNMWLHSMVERANEDGT 258
V++IG++ASG DI RD+A AKEVHIASR+ T+EK +N+W+HS ++ +EDG+
Sbjct: 208 VVVIGNFASGADISRDIAKVAKEVHIASRAREPHTYEKISVPQNNLWMHSEIDTTHEDGS 267
Query: 259 VVFRNGRVVSADVIMHC 275
+VF+NG+V+ AD I++C
Sbjct: 268 IVFKNGKVIFADSIVYC 284
|
|
| TAIR|locus:2009754 FMO GS-OX1 "AT1G65860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 144/274 (52%), Positives = 197/274 (71%)
Query: 3 RHXXXXXXXXXXXXXXHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+H EL REGHTVVV+++ +QVGG W Y+S+ +SDPL +D R VH
Sbjct: 11 KHVAVIGAGAAGLVTARELRREGHTVVVFDREKQVGGLWNYSSKADSDPLSLDTTRTIVH 70
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
+S+Y+SLR NLPRE MGF +PFV R ++ S D RRYP H EVL YLQ+FAREF ++++V
Sbjct: 71 TSIYESLRTNLPRECMGFTDFPFVPRIHDISRDSRRYPSHREVLAYLQDFAREFKIEEMV 130
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
R TEV+ V + KW V+S+ E FDAVVVC+GHF+ P +A +PGI SWPGK
Sbjct: 131 RFETEVVCVEPV-NGKWSVRSKNSVGFAAHEIFDAVVVCSGHFTEPNVAHIPGIKSWPGK 189
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
Q+HSHNYR+P PF ++VV++IG+YASG DI RD+A AKEVHIASR+ +T++K P
Sbjct: 190 QIHSHNYRVPGPFNNEVVVVIGNYASGADISRDIAKVAKEVHIASRASESDTYQKLPVPQ 249
Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHC 275
+N+W+HS ++ A++DG+++F+NG+VV AD I+HC
Sbjct: 250 NNLWVHSEIDFAHQDGSILFKNGKVVYADTIVHC 283
|
|
| TAIR|locus:2203871 FMO GS-OX2 "AT1G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 146/257 (56%), Positives = 195/257 (75%)
Query: 20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
EL REGHTVVV E+ ++VGG WIY+ + ESDPL +DP R VHSS+Y+SLR NLPRE MG
Sbjct: 28 ELSREGHTVVVLEREKEVGGLWIYSPKAESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87
Query: 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW 139
F +PFV R + S D RRYP H EVL YLQ+FAREF ++++VR EV+ V + KW
Sbjct: 88 FTDFPFVPRFDDESRDSRRYPSHMEVLAYLQDFAREFNLEEMVRFEIEVVRVEPV-NGKW 146
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQV 199
+V S+ V +E FDAVVVC+GH++ P +A +PGI SWPGKQ+HSHNYR+P PF+++V
Sbjct: 147 RVWSKTSGGVSHDEIFDAVVVCSGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPGPFENEV 206
Query: 200 VILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GYDNMWLHSMVERANEDGT 258
V++IG++ASG DI RD+A AKEVHIASR+ +T+EK P +N+W+HS ++ A EDG+
Sbjct: 207 VVVIGNFASGADISRDIAKVAKEVHIASRASEFDTYEKLPVPRNNLWIHSEIDTAYEDGS 266
Query: 259 VVFRNGRVVSADVIMHC 275
+VF+NG+VV AD I++C
Sbjct: 267 IVFKNGKVVYADSIVYC 283
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SXD5 | GSXL3_ARATH | 1, ., 8, ., -, ., - | 0.5863 | 0.7711 | 0.6066 | yes | no |
| Q9C8U0 | GSXL5_ARATH | 1, ., 8, ., -, ., - | 0.5827 | 0.7711 | 0.6066 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 354 | |||
| PLN02172 | 461 | PLN02172, PLN02172, flavin-containing monooxygenas | 1e-138 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 9e-34 | |
| pfam00743 | 532 | pfam00743, FMO-like, Flavin-binding monooxygenase- | 2e-32 | |
| pfam13738 | 202 | pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp | 8e-19 | |
| TIGR04046 | 400 | TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido | 6e-13 | |
| TIGR04018 | 316 | TIGR04018, Bthiol_YpdA, putative bacillithiol syst | 2e-12 | |
| PRK07233 | 434 | PRK07233, PRK07233, hypothetical protein; Provisio | 2e-09 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 6e-09 | |
| pfam13450 | 66 | pfam13450, NAD_binding_8, NAD(P)-binding Rossmann- | 4e-08 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 4e-08 | |
| PRK07208 | 479 | PRK07208, PRK07208, hypothetical protein; Provisio | 9e-08 | |
| PRK12814 | 652 | PRK12814, PRK12814, putative NADPH-dependent gluta | 4e-07 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 1e-06 | |
| TIGR00275 | 400 | TIGR00275, TIGR00275, flavoprotein, HI0933 family | 2e-06 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 2e-06 | |
| COG0665 | 387 | COG0665, DadA, Glycine/D-amino acid oxidases (deam | 3e-06 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 4e-06 | |
| COG1232 | 444 | COG1232, HemY, Protoporphyrinogen oxidase [Coenzym | 4e-06 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 4e-06 | |
| pfam01266 | 234 | pfam01266, DAO, FAD dependent oxidoreductase | 4e-06 | |
| TIGR01317 | 485 | TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH | 5e-06 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 1e-05 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 1e-05 | |
| COG1233 | 487 | COG1233, COG1233, Phytoene dehydrogenase and relat | 2e-05 | |
| pfam00890 | 401 | pfam00890, FAD_binding_2, FAD binding domain | 5e-05 | |
| PRK01747 | 662 | PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)- | 7e-05 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 7e-05 | |
| COG0644 | 396 | COG0644, FixC, Dehydrogenases (flavoproteins) [Ene | 8e-05 | |
| COG3349 | 485 | COG3349, COG3349, Uncharacterized conserved protei | 9e-05 | |
| pfam01593 | 444 | pfam01593, Amino_oxidase, Flavin containing amine | 1e-04 | |
| COG3380 | 331 | COG3380, COG3380, Predicted NAD/FAD-dependent oxid | 2e-04 | |
| PRK04176 | 257 | PRK04176, PRK04176, ribulose-1,5-biphosphate synth | 4e-04 | |
| COG4529 | 474 | COG4529, COG4529, Uncharacterized protein conserve | 4e-04 | |
| TIGR02733 | 492 | TIGR02733, desat_CrtD, C-3',4' desaturase CrtD | 4e-04 | |
| TIGR01318 | 467 | TIGR01318, gltD_gamma_fam, glutamate synthase smal | 4e-04 | |
| PLN02487 | 569 | PLN02487, PLN02487, zeta-carotene desaturase | 5e-04 | |
| PRK11883 | 451 | PRK11883, PRK11883, protoporphyrinogen oxidase; Re | 6e-04 | |
| pfam03486 | 405 | pfam03486, HI0933_like, HI0933-like protein | 7e-04 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 7e-04 | |
| pfam13454 | 153 | pfam13454, NAD_binding_9, FAD-NAD(P)-binding | 8e-04 | |
| TIGR02732 | 474 | TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot | 0.001 | |
| PRK12769 | 654 | PRK12769, PRK12769, putative oxidoreductase Fe-S b | 0.001 | |
| COG1231 | 450 | COG1231, COG1231, Monoamine oxidase [Amino acid tr | 0.001 | |
| COG0654 | 387 | COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox | 0.001 | |
| COG2081 | 408 | COG2081, COG2081, Predicted flavoproteins [General | 0.001 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 0.002 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 0.003 | |
| PRK12834 | 549 | PRK12834, PRK12834, putative FAD-binding dehydroge | 0.003 | |
| TIGR00562 | 462 | TIGR00562, proto_IX_ox, protoporphyrinogen oxidase | 0.004 | |
| TIGR02734 | 502 | TIGR02734, crtI_fam, phytoene desaturase | 0.004 | |
| PRK12831 | 464 | PRK12831, PRK12831, putative oxidoreductase; Provi | 0.004 |
| >gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Score = 401 bits (1031), Expect = e-138
Identities = 163/276 (59%), Positives = 218/276 (78%), Gaps = 2/276 (0%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+HVAVIGAGAAGLV EL REGHTVVV+E+ +QVGG W+YT ++ESDPL +DP R VH
Sbjct: 11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVH 70
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
SS+Y+SLR NLPRE MG++ +PFV R + S D RRYP H EVL YLQ+FAREF ++++V
Sbjct: 71 SSVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMV 130
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
R TEV+ V+ KW+V+S+ ++E FDAVVVCNGH++ P +A +PGI SWPGK
Sbjct: 131 RFETEVVRVEPVDG-KWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGK 189
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
Q+HSHNYR+P+PF+++VV++IG++ASG DI RD+A AKEVHIASR+ +T+EK P
Sbjct: 190 QIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQ 249
Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
+N+W+HS ++ A+EDG++VF+NG+VV AD I+HCTG
Sbjct: 250 NNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTG 285
|
Length = 461 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 9e-34
Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 32/227 (14%)
Query: 5 VAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
VA+IGAG +GL + L + G V++EK + VGG+W Y NRYP
Sbjct: 11 VAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY-------------NRYP--- 54
Query: 64 SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
LR++ P+ L+GF PF + E+ Y++++ ++G+ +R
Sbjct: 55 ----GLRLDSPKWLLGFPFLPFRWD--------EAFAPFAEIKDYIKDYLEKYGLRFQIR 102
Query: 124 LHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
+T V A E K W V + D E T D VVV GH S P + G+D + G+
Sbjct: 103 FNTRVEVADWDEDTKRWTVTT--SDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGR 160
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
+HS ++ P + + V++IG AS +DI +LA V ++ RS
Sbjct: 161 ILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRS 207
|
Length = 443 |
| >gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 25/233 (10%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+ VAVIGAG +GL L EG +E+ + +GG W +T E
Sbjct: 2 KKVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEG-----------R 50
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
+S+YKS+ N +E+ F +PF D + + + L YL+ FA+ F + + +
Sbjct: 51 ASIYKSVVTNSSKEMSCFSDFPF-------PEDYPNFMHNSKFLEYLRMFAKHFDLLKYI 103
Query: 123 RLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA--QVPGI 176
+ T V + S +W+V + + + E FDAV+VC GH + P L PGI
Sbjct: 104 QFKTTVCSVTKRPDFSTSGQWEVVT-EHEGKQESAVFDAVMVCTGHHTNPHLPLESFPGI 162
Query: 177 DSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
+ + G+ HS +Y+ P FQ + V++IG SG DI +L+ A +V +++R+
Sbjct: 163 NKFKGQYFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRT 215
|
This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532 |
| >gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 8e-19
Identities = 51/230 (22%), Positives = 85/230 (36%), Gaps = 38/230 (16%)
Query: 6 AVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
V+GAGAAG+ LL G V++ ++G Q GG W ++
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGGHW---------------RKWYPFVR 45
Query: 65 LYKSLRVN-----LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
L++ + P E E+ YL++ AR +G+
Sbjct: 46 LHQPSFFYGDFGMPDLNALSIDTSPKWDGKAE-------LASGAEIAAYLEDLARRYGL- 97
Query: 120 QVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW 179
+RL T V ++ V+ + V D VV G FSVP+ PG D+
Sbjct: 98 -PIRLSTRVTAVERDG-GRFVVRLTDGETV----RADYVVDATGAFSVPKPPGFPGADA- 150
Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
+ +H + + + V +IG + +D +L K+V +R
Sbjct: 151 --EGVHLVDVLERIDLKGKTVAVIGGGHTAIDAALNLLDLGKDVTWITRR 198
|
Length = 202 |
| >gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 6e-13
Identities = 75/252 (29%), Positives = 105/252 (41%), Gaps = 48/252 (19%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN---RYPV 61
V +IGAG AGL V + L + G VV EK V SW +S L V PN R P
Sbjct: 3 VVIIGAGQAGLSVSYYLKQAGIDHVVLEK-HTVAHSW-RDERWDSFCL-VTPNWQCRLPG 59
Query: 62 HSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQV 121
H Y+G+ D + +E++ YL +AR F
Sbjct: 60 HP--------------------------YDGT-DPDGFMVKDEIVAYLDGYARSFNPP-- 90
Query: 122 VRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI-DSWP 180
VR TEV + R + ++V + T D VV+ G + VP +P + + P
Sbjct: 91 VREGTEVTSLRKHGAGGFRVSTS-----AGAFTADQVVIATGGYHVPV---IPPLAERLP 142
Query: 181 G--KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238
Q+HS YR P+ D V+++G SG I DL ++VH+A S A
Sbjct: 143 ADVLQLHSSEYRNPDQLPDGAVLVVGSGQSGCQIAEDLHLAGRKVHLAVGS-APRCARFY 201
Query: 239 PGYDNM-WLHSM 249
G D + WL M
Sbjct: 202 RGRDVVDWLDDM 213
|
Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400 |
| >gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 48/203 (23%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
V +IGAG GL E + G + ++ EKG V + IY RYP + +
Sbjct: 2 VIIIGAGPCGLACAIEAQKAGLSYLIIEKGNLV--NSIY--------------RYPTNMT 45
Query: 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
+ + E + PF++ N + P E L Y + A F ++ +RL
Sbjct: 46 FFST------SERLEIGGIPFISENPK--------PTRNEALEYYRRVAERFKLN--IRL 89
Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDA--VVVCNGHFSVPRLAQVPGIDSWPGK 182
+ EVL + + ++V + K T+ A V+V G++ +P L VPG D P
Sbjct: 90 YEEVLKVKKTDGG-FEVTTEK-------GTYQAKNVIVATGYYDIPNLLNVPGEDL-P-- 138
Query: 183 QMH-SHNYRIPNPFQDQVVILIG 204
SH Y+ +P+ Q V+++G
Sbjct: 139 --KVSHYYKEAHPYFGQKVVVVG 159
|
Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316 |
| >gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
+A++G G AGL + L + GH V V+E +Q+GG
Sbjct: 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36
|
Length = 434 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 6e-09
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
VAV+G+G AGL +L R GH V V+E+ +++GG
Sbjct: 146 VAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
|
Length = 471 |
| >gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 4e-08
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 7 VIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE 48
++GAG +GLV + L + G V+V EK +++GG Y+
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGG-NAYSERDP 41
|
Length = 66 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 4e-08
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
+ VAVIGAG AGL H L R+G+ V ++E ++ GG
Sbjct: 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
|
Length = 457 |
| >gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 9e-08
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
+ V +IGAG AGL +ELL+ G+ V V E VGG
Sbjct: 5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41
|
Length = 479 |
| >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
+ VA+IGAG AGL + LLR+GH V +++ EQ GG
Sbjct: 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230
|
Length = 652 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
VAVIGAG AGL + L R GH V V+E+ E GG
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG 576
|
Length = 1019 |
| >gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 35/182 (19%)
Query: 6 AVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--------GSWIYTSETESDPLGVDPN 57
+IG GAAGL+ REG +V++ EK +++G G T+ +
Sbjct: 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEF---VA 57
Query: 58 RYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDL------RRYP---GHEEVLRY 108
YP + +S L F + ++L R +P +VL
Sbjct: 58 YYPRNGKFLRSA-------LSRFSNKDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDA 110
Query: 109 LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168
L N +E GV+ + +++V + + + + V++ E D V++ G S P
Sbjct: 111 LLNELKELGVE--ILTNSKVKSIKKDD-GGFGVETSGG-----EYEADKVIIATGGLSYP 162
Query: 169 RL 170
+L
Sbjct: 163 QL 164
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
+ VAVIG G AGL + L R GH V ++E G ++GG
Sbjct: 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
|
Length = 564 |
| >gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
V +IG G GL + L G V V E GE GG+
Sbjct: 5 MDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGA 42
|
Length = 387 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 22/35 (62%), Positives = 25/35 (71%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
VAVIGAG AGL G+ L R GH V V+EK E+ GG
Sbjct: 540 VAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP 60
+A+IG G AGL + L + G V ++E ++VGG + T + + R P
Sbjct: 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG-LLRTVKIDGFLF----ERGP 55
Query: 61 VHSSLYKSLRVNLPREL 77
H K ++L +EL
Sbjct: 56 HHFLARKEEILDLIKEL 72
|
Length = 444 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
VAVIGAG AGL +L R GH V V+E+ GG
Sbjct: 126 VAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160
|
Length = 457 |
| >gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 45/208 (21%), Positives = 62/208 (29%), Gaps = 61/208 (29%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS-------WIYTSETESDP----- 51
V VIG G GL +EL R G +V + E+G+ G+ E P
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLHPGLRKERAPLLARL 60
Query: 52 ----------------------------LGVDPNRYPVHSSLYKSLRVN-LPRELMG--- 79
L D L +LR LP EL+
Sbjct: 61 ALESRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGLPVELLDAEE 120
Query: 80 -FQAYPFVARNYEGSVDLRRYPG-----HEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133
+ P ++ G + YP +LR L A GV+ + TEV
Sbjct: 121 LRELEPGLSPGIRGGL---FYPDGGHVDPARLLRALARAAEALGVE--ILEGTEVTGLE- 174
Query: 134 VESNKWKVKSRKKDDVVEEETFDAVVVC 161
E V++ E D VV
Sbjct: 175 REGGGVTVETED-----GEIRADKVVNA 197
|
This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234 |
| >gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
VAV+G+G AGL +L R GHTV V+E+ ++ GG +Y
Sbjct: 146 VAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY 184
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
VAVIGAG AGL EL + GH+V V+E + GG Y
Sbjct: 136 VAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY 174
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 58/291 (19%), Positives = 97/291 (33%), Gaps = 68/291 (23%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
V +IG G AGL L R G V + E+ NR +
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCY-----------------NRGCLPK 43
Query: 64 SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
L + + L + +EFGV+ V
Sbjct: 44 KL-------------LLEVAEGLEL--------------AIGLALPEEVYKEFGVE--VL 74
Query: 124 LHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQ 183
L TEV++ K K + E T+D +++ G + PR+ +PG++ +
Sbjct: 75 LGTEVVDI----DRGEKTVVLKDVETGREITYDKLIIATG--ARPRIPGIPGVEVATLRG 128
Query: 184 MHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR------------SVA 231
+ + + + V+++G GL++ LA KEV + R S A
Sbjct: 129 VIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAA 188
Query: 232 DETHEKQPGYDNMWLHSM-VERANEDGTVVFR---NGRVVSADVIMHCTGL 278
++ L + V DG VV +G + ADV++ G
Sbjct: 189 LLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGR 239
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
V VIGAG GL L R G V V EK ++VGG
Sbjct: 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGR 41
|
Length = 487 |
| >gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
V VIG+G AGL E G V V EKG+ GG
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGG 36
|
This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401 |
| >gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
R A+IG G AG + L R G V +YE E
Sbjct: 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA 296
|
Length = 662 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 7e-05
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
+ V V+GAG GL + G V + E +++GG
Sbjct: 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174
|
Length = 415 |
| >gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 35/169 (20%), Positives = 55/169 (32%), Gaps = 35/169 (20%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----GSWIYTSETES-----DPLGV 54
V ++GAG AG L + G V+V EKG + G G + E D
Sbjct: 6 VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIE 65
Query: 55 DPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR 114
+ + + +P EG + R + ++L A
Sbjct: 66 RKVTGARIYFPGEKVAIEVPVG--------------EGYIVDRA-----KFDKWLAERAE 106
Query: 115 EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG 163
E G + + T V + E + V R DD V V+ +G
Sbjct: 107 EAGAE--LYPGTRV-TGVIREDDGVVVGVRAGDDEV---RAKVVIDADG 149
|
Length = 396 |
| >gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWI 42
VA+ GAG AGL +EL G+ V +YE +++GG SW
Sbjct: 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWR 43
|
Length = 485 |
| >gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Query: 13 AGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS----SLYKS 68
AGL ELLR G V V E ++VGG I T + + + + +L
Sbjct: 2 AGLAAARELLRAGFDVTVLEARDRVGG-RIRTVRFDGFLIELGAQWFHGAYPNLLNLLLE 60
Query: 69 LRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGV 118
L + L L F PFV Y G L L E +
Sbjct: 61 LGLELGLLLFPFPGDPFVRLKYRGGPYPDLPGDLPPPLFLLLRSLLELEL 110
|
This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444 |
| >gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
+A++GAG AGL + L G V V+EKG VGG
Sbjct: 4 IAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38
|
Length = 331 |
| >gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
VA++GAG +GL + L + G V V+E+ GG
Sbjct: 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62
|
Length = 257 |
| >gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 47/248 (18%), Positives = 79/248 (31%), Gaps = 37/248 (14%)
Query: 1 MFRHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDP 56
MF+ VA+IG G +G+ + LL+ G + ++E G Y++E L V
Sbjct: 1 MFK-VAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIAYSTEEPEHLLNVPA 58
Query: 57 NRYPVHSS---------LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR 107
R + L K L+ E + + R Y +
Sbjct: 59 ARMSAFAPDIPQDFVRWLQKQLQRYRDPEDINHDGQAYPPRR-----LFGEY-----LRE 108
Query: 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167
L +V + E + R ++N D E D +V+ GH
Sbjct: 109 QLAALLARGRQTRVRTIREEATSVRQ-DTNAGGYLVTTAD--GPSEIADIIVLATGH--S 163
Query: 168 PRLAQVPGIDSWPGKQMHSHNYRIPNPF----QDQVVILIGHYASGLDIKRDL--AGFAK 221
A D ++ + Y N D V+++G + +D L G
Sbjct: 164 APPADPAARDLKGSPRLIADPYP-ANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKG 222
Query: 222 EVHIASRS 229
+ SR
Sbjct: 223 PITAISRR 230
|
Length = 474 |
| >gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
V VIGAG AGL L + G+ V + E+ Q GG
Sbjct: 3 SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492 |
| >gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
VAVIGAG AGL L R G VVV+++ ++GG
Sbjct: 144 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467 |
| >gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
VA+IGAG AG+ ELL +GH V +YE +GG
Sbjct: 78 VAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGG 112
|
Length = 569 |
| >gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYT 44
+ VA+IG G GL + L ++G + + E +++GG I T
Sbjct: 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK-IQT 43
|
Length = 451 |
| >gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 46/189 (24%), Positives = 69/189 (36%), Gaps = 41/189 (21%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSE------TESDPLGVDP 56
V VIG GAAGL+ + G V++ +KG+++ G I S T S
Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKL-GRKILISGGGRCNVTNSVEP---D 56
Query: 57 N---RYPVHSS-LYKSLRVNLPRELMGFQAYPFVARN----YEGSVDLRRYP---GHEEV 105
RYP + L +L P + + F E R +P ++
Sbjct: 57 EFLSRYPGNPHFLKSALSRFTPWDFIA-----FFEELGVPLKEED-HGRLFPVSDKASDI 110
Query: 106 LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS----RKKDDVVEEETFDAVVVC 161
+ L N +E GV +R T VL + R D EE D++V+
Sbjct: 111 VDALLNELKELGV--KIRTRTRVL--------SVEKDDDGRFRVDTDGGEELEADSLVLA 160
Query: 162 NGHFSVPRL 170
G S P+
Sbjct: 161 TGGLSWPKT 169
|
Length = 405 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 57/265 (21%), Positives = 96/265 (36%), Gaps = 70/265 (26%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
V +IG G AGL R G VV+ +G + GG T++ E+ P G
Sbjct: 6 VIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYP-GFPGG------- 57
Query: 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
L ELM E++ + F E D+V ++
Sbjct: 58 -------ILGPELM------------------------EQMKEQAEKFGVEIVEDEVEKV 86
Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETF--DAVVVCNGHFSVPRLAQVPGIDSWPGK 182
+E +KVK ++ T+ AV++ G + R VPG + + GK
Sbjct: 87 E--------LEGGPFKVK-------TDKGTYEAKAVIIATG--AGARKLGVPGEEEFEGK 129
Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYD 242
+ F+ + V++IG S ++ L+ AK+V + R + E+
Sbjct: 130 GVSYCATCDGF-FKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRR-DEFRAEEI---- 183
Query: 243 NMWLHSMVERANEDGTVVFRNGRVV 267
+VER ++ + VV
Sbjct: 184 ------LVERLKKNVKIEVLTNTVV 202
|
Length = 305 |
| >gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 8e-04
Identities = 36/174 (20%), Positives = 55/174 (31%), Gaps = 35/174 (20%)
Query: 6 AVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIYTSE--------TESDPLG 53
A+IGAG GL V LLR + V++ G ++ ++ T + +
Sbjct: 1 AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSP-PGAGGVWRTDQPPQLLLNTPAAQMS 59
Query: 54 VDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGH--EEVLRYLQN 111
+ P+ P S + L E G F R + G L
Sbjct: 60 LFPDDPP---SFLEWLEAQ-GEEEAGLDPDDFPPR--------ALF-GEYLRWRFSELLA 106
Query: 112 FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHF 165
A V EV++ R + V + DAVV+ GH
Sbjct: 107 RAPAGV--TVRVHRAEVVDLR-PRGGGYTVTLADGATL----RADAVVLATGHG 153
|
Length = 153 |
| >gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWI 42
VA++GAG AGL EL+ GH V +YE +G GSW+
Sbjct: 2 VAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWV 42
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474 |
| >gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
+ VA+IGAG AGL L R G V VY++ ++GG
Sbjct: 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG 364
|
Length = 654 |
| >gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
V ++GAG AGL +EL + G+ V + E ++VGG
Sbjct: 10 VIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44
|
Length = 450 |
| >gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33
VA++GAG AGL + L R G V + E+
Sbjct: 3 LDVAIVGAGPAGLALALALARAGLDVTLLER 33
|
Length = 387 |
| >gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
V +IG G AGL+ + G V++ +KG ++G
Sbjct: 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLG 39
|
Length = 408 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35
V VIGAG AG V + G V + EKG
Sbjct: 6 VIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36
|
Length = 460 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
VAVIG+G AGL +L + G+ V V+E ++GG Y
Sbjct: 434 VAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY 472
|
Length = 752 |
| >gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEK-GEQ-VGG 39
V V+GAG AGLV EL G V++ ++ E +GG
Sbjct: 7 VIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43
|
Length = 549 |
| >gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.004
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 3 RHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIYTSE 46
+HV +IG G +GL + L +E + + E ++VGG I T +
Sbjct: 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG-KIQTVK 49
|
This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462 |
| >gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
VIGAG GL + L G V V E+ ++ GG
Sbjct: 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGG 35
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502 |
| >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
VAVIG+G AGL +L + G+ V ++E + GG +Y
Sbjct: 143 VAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY 181
|
Length = 464 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 354 | |||
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 100.0 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 100.0 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 99.98 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.98 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 99.98 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 99.98 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 99.98 | |
| PLN02546 | 558 | glutathione reductase | 99.98 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 99.98 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 99.98 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 99.97 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.97 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.97 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 99.97 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 99.97 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.97 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 99.97 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 99.97 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.97 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 99.97 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 99.97 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.97 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 99.97 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 99.97 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 99.97 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 99.96 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.96 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.96 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 99.96 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 99.96 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 99.96 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 99.96 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.95 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 99.95 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 99.95 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 99.95 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 99.95 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 99.95 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.94 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 99.94 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.93 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.93 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.93 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.93 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.92 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.92 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 99.92 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.92 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 99.91 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.91 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.91 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.9 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 99.9 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.89 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.89 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 99.89 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 99.88 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.88 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.88 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.87 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.83 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.78 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.75 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.72 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.71 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.67 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.66 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.61 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.6 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.58 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.55 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.49 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.48 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.39 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.38 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 99.37 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 99.36 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 99.35 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 99.33 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 99.32 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 99.32 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 99.28 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 99.28 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 99.27 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 99.27 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 99.27 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 99.26 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 99.26 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 99.26 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 99.26 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 99.26 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 99.25 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 99.24 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.24 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 99.24 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 99.23 | |
| PLN02463 | 447 | lycopene beta cyclase | 99.23 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 99.23 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 99.23 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 99.22 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 99.21 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 99.21 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 99.21 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 99.21 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 99.2 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 99.2 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 99.2 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 99.2 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 99.19 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 99.19 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 99.19 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 99.19 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.18 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 99.17 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 99.16 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 99.16 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 99.15 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 99.14 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 99.13 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 99.13 | |
| PRK05868 | 372 | hypothetical protein; Validated | 99.13 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 99.12 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 99.12 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 99.12 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.1 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 99.1 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.09 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 99.09 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 99.09 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 99.09 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 99.08 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.07 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 99.07 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 99.06 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 99.05 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 99.05 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 99.04 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 99.03 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 99.03 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 99.02 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 99.02 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 99.02 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 99.02 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 99.0 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 99.0 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 99.0 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 99.0 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 99.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.97 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.96 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.96 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.95 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.94 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.94 | |
| PLN02985 | 514 | squalene monooxygenase | 98.93 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.93 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.92 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.92 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.91 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.91 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.91 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.9 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.89 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 98.89 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.89 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.89 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.88 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.88 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.88 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.87 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.87 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.87 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.87 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.86 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.86 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 98.85 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.85 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.85 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.85 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.84 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.84 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.83 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.83 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.82 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 98.82 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 98.82 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.82 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.82 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.81 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.81 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.81 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.81 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.8 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.8 | |
| PLN02507 | 499 | glutathione reductase | 98.79 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.79 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.79 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.78 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 98.78 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.78 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 98.77 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.76 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 98.76 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.76 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.76 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.75 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.75 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.75 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.75 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.74 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.74 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.74 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 98.73 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 98.73 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.72 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.72 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.72 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.72 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.72 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 98.71 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.71 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 98.71 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.7 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 98.69 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.69 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.69 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 98.69 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.67 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 98.67 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.67 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.67 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 98.67 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.67 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.66 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.66 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.65 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.65 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.65 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 98.64 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 98.64 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.63 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 98.63 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 98.63 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.62 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.62 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.62 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.62 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 98.61 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 98.61 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 98.6 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.59 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 98.59 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.58 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 98.57 | |
| PLN02546 | 558 | glutathione reductase | 98.57 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 98.57 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 98.57 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 98.56 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.56 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 98.55 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 98.54 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 98.54 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 98.54 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.52 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.51 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 98.51 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.43 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 98.42 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 98.42 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.42 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 98.39 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.37 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 98.37 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 98.37 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 98.35 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 98.34 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.34 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 98.32 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.32 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.31 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 98.29 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 98.29 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 98.28 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 98.27 | |
| PLN02268 | 435 | probable polyamine oxidase | 98.27 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.27 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 98.26 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 98.24 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 98.23 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 98.23 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 98.22 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 98.2 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.19 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 98.19 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 98.18 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 98.18 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 98.16 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 98.15 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.14 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 98.13 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.12 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 98.11 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 98.1 | |
| PLN02568 | 539 | polyamine oxidase | 98.1 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 98.09 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 98.06 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 98.05 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 98.04 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.03 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 98.03 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 98.02 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.99 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.98 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 97.98 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 97.97 | |
| PLN02676 | 487 | polyamine oxidase | 97.95 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.95 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.92 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 97.92 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.91 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 97.91 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.9 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 97.88 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 97.88 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.87 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.86 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 97.85 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 97.79 | |
| PLN02612 | 567 | phytoene desaturase | 97.78 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 97.77 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 97.75 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.75 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.74 | |
| PLN02463 | 447 | lycopene beta cyclase | 97.72 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.69 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 97.69 | |
| PLN03000 | 881 | amine oxidase | 97.69 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.68 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 97.68 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 97.67 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 97.67 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.66 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 97.66 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.66 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.65 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.64 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 97.63 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.63 | |
| PLN02976 | 1713 | amine oxidase | 97.63 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.63 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 97.6 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.58 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 97.58 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.56 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.56 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.55 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.54 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 97.54 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.54 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 97.51 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 97.49 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.44 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.44 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.43 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 97.42 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.42 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.41 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 97.41 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 97.39 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.37 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.36 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.36 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 97.36 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 97.35 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 97.35 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.34 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.33 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.32 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 97.32 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.32 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.31 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 97.29 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 97.26 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.26 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.24 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 97.23 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 97.22 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.21 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 97.21 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.19 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.19 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.19 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 97.19 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 97.18 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 97.18 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 97.17 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.15 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.14 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.14 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.1 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.09 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.07 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 97.07 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 97.06 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.06 | |
| KOG3923 | 342 | consensus D-aspartate oxidase [Amino acid transpor | 97.04 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.02 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.02 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 97.01 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 97.01 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 97.01 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.97 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 96.95 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 96.94 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 96.93 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.93 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 96.93 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.91 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 96.88 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 96.87 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 96.86 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 96.86 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 96.86 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 96.84 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 96.84 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 96.84 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 96.83 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.83 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 96.82 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 96.78 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 96.78 | |
| PLN02785 | 587 | Protein HOTHEAD | 96.72 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 96.7 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 96.68 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 96.66 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 96.64 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 96.64 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 96.63 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.62 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 96.62 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 96.6 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 96.59 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 96.57 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 96.56 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 96.49 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 96.48 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 96.44 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 96.43 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 96.36 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 96.35 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 96.35 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.31 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 96.3 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 96.29 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 96.26 | |
| PRK05675 | 570 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.18 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 96.17 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.13 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.12 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.11 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 96.02 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.98 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.89 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 95.89 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 95.88 | |
| TIGR03197 | 381 | MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri | 95.83 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 95.81 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 95.8 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 95.79 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 95.76 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.74 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 95.74 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 95.71 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.69 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 95.65 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.63 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.62 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.59 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.57 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.53 |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=324.67 Aligned_cols=285 Identities=58% Similarity=1.033 Sum_probs=244.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+++|+.|++.|+++++||+++.+||.|.+.+....++.++.|.....++..|..+..+.|...++++
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 58999999999999999999999999999999999999999987766666677777667788899999999999999999
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
++|+...........+.||++.++.+|++++++++++..+++++++|+++++.+ +.|.|++.++.+...+..||.||+|
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeEEEEEEcCCCceEEEEcCEEEEe
Confidence 999865322222245689999999999999999999988899999999999876 8899998765433346789999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccccccCC-C
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-G 240 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~l~-~ 240 (354)
||+.+.|++|.++|.+.+.+..+|++.++.+..+++++|+|||+|.+|+|+|..|++.+++|++++|++......++. .
T Consensus 169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~ 248 (461)
T PLN02172 169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVP 248 (461)
T ss_pred ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCC
Confidence 999889999999999999999999999999888999999999999999999999999999999999976533333332 3
Q ss_pred CCCeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCc
Q 018550 241 YDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKP 290 (354)
Q Consensus 241 ~~~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~ 290 (354)
..+++.+..|..+.+++.|++.||+.+++|.||+|||+. |+.+||..
T Consensus 249 ~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~---~~~pfL~~ 295 (461)
T PLN02172 249 QNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYK---YHFPFLET 295 (461)
T ss_pred CCceEECCcccceecCCeEEECCCCCccCCEEEECCcCC---ccccccCc
Confidence 346777888888777777999999999999999999999 55567754
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=302.99 Aligned_cols=263 Identities=37% Similarity=0.678 Sum_probs=194.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+|+|+|||||++|+++|+.|.+.|+++++||+++.+||.|.+..... --.+..|+.+..+.+..++.++
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~-----------~g~~~~y~sl~~n~sk~~~~fs 69 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPE-----------DGRSSVYDSLHTNTSKEMMAFS 69 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCC-----------CSEGGGSTT-B-SS-GGGSCCT
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCC-----------CCccccccceEEeeCchHhcCC
Confidence 47999999999999999999999999999999999999999742210 0124689999999999999999
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC----CcEEEEEeecCCceEEEEeCE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES----NKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~----~~~~v~~~~g~~~~~~~~~d~ 157 (354)
++|++. +.+.||++.++.+|++.+++++++..+++++++|+++++.++ +.|.|++.++ +..++..||+
T Consensus 70 dfp~p~-------~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~-g~~~~~~fD~ 141 (531)
T PF00743_consen 70 DFPFPE-------DYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND-GKEETEEFDA 141 (531)
T ss_dssp TS-HCC-------CCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT-TEEEEEEECE
T ss_pred CcCCCC-------CCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC-CeEEEEEeCe
Confidence 999865 356799999999999999999999989999999999998653 5799988653 3445678999
Q ss_pred EEEeeCCCCCcccCC--CCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----
Q 018550 158 VVVCNGHFSVPRLAQ--VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---- 231 (354)
Q Consensus 158 vIlAtG~~s~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---- 231 (354)
||+|||+++.|++|. ++|++.|.|.++|+..|+++..+++|+|+|||+|.||+|+|.+|++.+++|++..|++.
T Consensus 142 VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~p 221 (531)
T PF00743_consen 142 VVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLP 221 (531)
T ss_dssp EEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-------
T ss_pred EEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccc
Confidence 999999999999996 99999999999999999999999999999999999999999999999999999988874
Q ss_pred --------------------------ccccccC------------------------------------CCCCCeEEecc
Q 018550 232 --------------------------DETHEKQ------------------------------------PGYDNMWLHSM 249 (354)
Q Consensus 232 --------------------------~~~~~~l------------------------------------~~~~~~~~~~~ 249 (354)
....+.+ ...+++.....
T Consensus 222 r~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~ 301 (531)
T PF00743_consen 222 RYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPD 301 (531)
T ss_dssp -----------------------------------------------------------------------------EE-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000000 01233556677
Q ss_pred eeEEecCCcEEEccCcEE-ecCEEEEcccCCCccCc
Q 018550 250 VERANEDGTVVFRNGRVV-SADVIMHCTGLTGTSTT 284 (354)
Q Consensus 250 v~~v~~~~~v~~~~g~~~-~~D~vi~a~G~~~~~p~ 284 (354)
|+++.+++ |+++||+.+ ++|.||+|||+..++|.
T Consensus 302 I~~~~~~~-v~F~DGs~~e~vD~II~~TGY~~~fpF 336 (531)
T PF00743_consen 302 IKRFTENS-VIFEDGSTEEDVDVIIFCTGYKFSFPF 336 (531)
T ss_dssp EEEE-SSE-EEETTSEEEEE-SEEEE---EE---TT
T ss_pred cccccccc-ccccccccccccccccccccccccccc
Confidence 77887766 999999775 69999999999966653
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=272.66 Aligned_cols=268 Identities=46% Similarity=0.816 Sum_probs=223.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
|.++|+|||||+|||++|+.|.++|++++++||.+.+||.|.+.+... ..++..|..+..+.|+.++++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~-----------~~~ss~Y~~l~tn~pKe~~~~ 73 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE-----------VVHSSVYKSLRTNLPKEMMGY 73 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc-----------ccccchhhhhhccCChhhhcC
Confidence 368999999999999999999999999999999999999999853322 345667999999999999999
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
+++|+... ....||++.++.+||+++++++++..+++++++|..++...++.|.|.+.+..+...+..||.|++
T Consensus 74 ~dfpf~~~------~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvV 147 (448)
T KOG1399|consen 74 SDFPFPER------DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVV 147 (448)
T ss_pred CCCCCccc------CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEE
Confidence 99999764 455679999999999999999999988999999999988664699999988654346889999999
Q ss_pred eeCCCCCcccCCCCC--CCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec--CCccccc
Q 018550 161 CNGHFSVPRLAQVPG--IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS--VADETHE 236 (354)
Q Consensus 161 AtG~~s~~~~p~~~g--~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~--~~~~~~~ 236 (354)
|||++..|++|.++| .+.|.|+.+|++.|+.++.+.+++|+|||.|.||+|++.++++.+++|.+..++ .......
T Consensus 148 ctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~ 227 (448)
T KOG1399|consen 148 CTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPE 227 (448)
T ss_pred cccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccc
Confidence 999986699999998 668999999999999999999999999999999999999999998888888651 0011111
Q ss_pred cCCCCCCeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccc
Q 018550 237 KQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLF 287 (354)
Q Consensus 237 ~l~~~~~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~ 287 (354)
. . .........|..+.+++.+.+.++....+|.||+|||+...+|..+-
T Consensus 228 ~-~-~~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~ 276 (448)
T KOG1399|consen 228 I-L-GENLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLET 276 (448)
T ss_pred e-e-ecceEEccccccccCcceEEEcCceeEEeeeEEEeeeeEeecceecc
Confidence 1 1 11333333488888888566666777889999999999977775543
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=265.96 Aligned_cols=306 Identities=22% Similarity=0.264 Sum_probs=210.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccccc-ccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (354)
.+|++|||+||+|..+|..+++.|.++.++|+...+||+|.+ +||+|.|.+++.... ..+.+.........
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln--------~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~ 75 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN--------VGCIPSKALLHAAEVIEEARHAAKEYGISA 75 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe--------eCccccHHHHHHHHHHHHHhhcccccceec
Confidence 589999999999999999999999999999998789999999 599999998886654 44443322111111
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
..- -.++.++.++.+ ...+..+++ +.. .+..-+ +..+|.+... .
T Consensus 76 ~~~---------------~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~--vi~-G~a~f~-----~~~~v~V~~~--~ 130 (454)
T COG1249 76 EVP---------------KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVD--VIR-GEARFV-----DPHTVEVTGE--D 130 (454)
T ss_pred CCC---------------CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCE--EEE-EEEEEC-----CCCEEEEcCC--C
Confidence 110 011133333333 333333444 332 111111 2234444432 1
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.++++++++|+||| |+|+.|+.++.+.. ..+.+....... ..|++++|||||++|+|+|+.+++.|.+||++++.
T Consensus 131 ~~~~~a~~iiIATG--S~p~~~~~~~~~~~--~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~ 205 (454)
T COG1249 131 KETITADNIIIATG--SRPRIPPGPGIDGA--RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERG 205 (454)
T ss_pred ceEEEeCEEEEcCC--CCCcCCCCCCCCCC--eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 25899999999999 99999998887762 234443333333 57899999999999999999999999999999998
Q ss_pred CC----------ccccccCCCCC-CeEEecceeEEecCCc---EEEccCc--EEecCEEEEcccCCCccCccccc--Cch
Q 018550 230 VA----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGR--VVSADVIMHCTGLTGTSTTTLFL--KPM 291 (354)
Q Consensus 230 ~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~--~~~~D~vi~a~G~~~~~p~~~~l--~~~ 291 (354)
+. +...+.|++.+ +++.++.++.++.++. +.+++|. ++.+|.+++|+|++ ||++-| +..
T Consensus 206 ~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~---Pn~~~LgLe~~ 282 (454)
T COG1249 206 DRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK---PNTDGLGLENA 282 (454)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc---cCCCCCChhhc
Confidence 86 22334445544 7889999999985542 6667775 78899999999999 766632 222
Q ss_pred hhh----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhh
Q 018550 292 ALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCF 349 (354)
Q Consensus 292 ~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (354)
+.. ...|||+|||+.. +..|....+.++.+... .....+.+|.-++|.||+..
T Consensus 283 Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g~~~-----~~~d~~~iP~~ift~Peia~ 357 (454)
T COG1249 283 GVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKR-----TPIDYRLIPSVVFTDPEIAS 357 (454)
T ss_pred CceECCCCCEEeCCccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhCCCC-----CcCcccCCCEEEECCCccee
Confidence 221 1349999999763 46677778888876222 11233556667888999988
Q ss_pred hccc
Q 018550 350 LHKT 353 (354)
Q Consensus 350 ~~~~ 353 (354)
.+.|
T Consensus 358 VGlt 361 (454)
T COG1249 358 VGLT 361 (454)
T ss_pred eeCC
Confidence 8876
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=255.89 Aligned_cols=310 Identities=16% Similarity=0.180 Sum_probs=198.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+||||||+|++||..++++|.+|+|+|+ +.+||+|.+. +|.|.+.++..........+.+.......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~~~~~g~~~~ 72 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIR--------GCVPKKLMVYGSTFGGEFEDAAGYGWTVG 72 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecC--------CcCchHHHHHHHHHHHHHhhhHhcCcCCC
Confidence 58999999999999999999999999999998 4899999984 99999987765433222222211111000
Q ss_pred --CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 82 --AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
.+.|..-.. ........+.++++..+++.+++ +.. .++..++. ....+. .++ ..+.||+||
T Consensus 73 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~gV~--~~~-g~~~~v~~---~~v~v~-~~g----~~~~~d~lI 135 (446)
T TIGR01424 73 KARFDWKKLLQ------KKDDEIARLSGLYKRLLANAGVE--LLE-GRARLVGP---NTVEVL-QDG----TTYTAKKIL 135 (446)
T ss_pred CCCcCHHHHHH------HHHHHHHHHHHHHHHHHHhCCcE--EEE-EEEEEecC---CEEEEe-cCC----eEEEcCEEE
Confidence 011100000 00000023444555556666777 554 46666543 333332 222 378999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----c--
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----D-- 232 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-----~-- 232 (354)
+||| +.|..|+++|.+.. ..+...... ...+++++|||+|.+|+|+|..+++.|.+|+++.+.+. +
T Consensus 136 iATG--s~p~~p~i~G~~~~----~~~~~~~~l-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~ 208 (446)
T TIGR01424 136 IAVG--GRPQKPNLPGHELG----ITSNEAFHL-PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDD 208 (446)
T ss_pred EecC--CcCCCCCCCCccce----echHHhhcc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHH
Confidence 9999 88998988886431 121111111 12468999999999999999999999999999998764 1
Q ss_pred ---cccccCCCCC-CeEEecceeEEecCC-c--EEEccCcEEecCEEEEcccCCCccCccccc--Cchhhh---------
Q 018550 233 ---ETHEKQPGYD-NMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGLTGTSTTTLFL--KPMALL--------- 294 (354)
Q Consensus 233 ---~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~~--------- 294 (354)
...+.+++.+ +++.++.++++..++ . +.+.+++++++|.||+|+|+. ||++.+ ...+..
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~---pn~~~l~l~~~g~~~~~~G~i~v 285 (446)
T TIGR01424 209 MRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRS---PNTKGLGLEAAGVELNDAGAIAV 285 (446)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCC---cCCCcCCccccCeEECCCCcEEe
Confidence 1223344455 889999999997432 2 556678889999999999999 666542 222111
Q ss_pred -------hceeeeecccchh------hHHHHHHHhhhccCCCc-ccccCCCCCccccCCchhhhhhhhhhccc
Q 018550 295 -------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHR-RLSLSPSLNSRASGLPVFCLVELCFLHKT 353 (354)
Q Consensus 295 -------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (354)
..+|||+|||+.. +..|+...+.++.+... .+.+ ..++..+++.+|+.+.+.|
T Consensus 286 d~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~~~~~~~~------~~~p~~if~~p~ia~vG~t 352 (446)
T TIGR01424 286 DEYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGNNPTKFDH------DLIATAVFSQPPLGTVGLT 352 (446)
T ss_pred CCCCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcCCCCccCc------CCCCeEEeCCchhEEEECC
Confidence 2349999999962 45667777778765332 2222 2233335555566555544
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=236.85 Aligned_cols=252 Identities=25% Similarity=0.312 Sum_probs=199.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCc-EEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+.+||+||||||||++||..+++.+.+ ++++|+ ..+|+......... .
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~~ve------------------------------n 50 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTTDVE------------------------------N 50 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccceeec------------------------------C
Confidence 358999999999999999999999998 555555 56776655432111 1
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+++++... ...++++.+++.+..++.+ +.. .+|.+++..+ +.|.|.+.++ ++++++||
T Consensus 51 ypg~~~~~-------------~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~-~~F~v~t~~~-----~~~ak~vI 108 (305)
T COG0492 51 YPGFPGGI-------------LGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEG-GPFKVKTDKG-----TYEAKAVI 108 (305)
T ss_pred CCCCccCC-------------chHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecC-ceEEEEECCC-----eEEEeEEE
Confidence 22222211 1278889999999999988 555 7888887765 3788888876 59999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----cccc
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH 235 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~ 235 (354)
+||| ..++.|.+++..++.++.++.+..++. .+++++|+|||||.+|+|.|..|.+.+++|++++|++. +...
T Consensus 109 iAtG--~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~ 185 (305)
T COG0492 109 IATG--AGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILV 185 (305)
T ss_pred ECcC--CcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHH
Confidence 9999 888999888877888899999999998 88999999999999999999999999999999999886 3344
Q ss_pred ccCCCC--CCeEEecceeEEecCC--cEEEccC----cEEecCEEEEcccCCCccCcccccCchhhh-------------
Q 018550 236 EKQPGY--DNMWLHSMVERANEDG--TVVFRNG----RVVSADVIMHCTGLTGTSTTTLFLKPMALL------------- 294 (354)
Q Consensus 236 ~~l~~~--~~~~~~~~v~~v~~~~--~v~~~~g----~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------------- 294 (354)
+++.+. ..+++++.|+++.+++ .|++.+. +++++|-++.+.|.. |+++|+++....
T Consensus 186 ~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~---p~~~~~~~~~~~~~~g~I~v~~~~~ 262 (305)
T COG0492 186 ERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHL---PNTELLKGLGVLDENGYIVVDEEME 262 (305)
T ss_pred HHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCC---CchHHHhhccccCCCCcEEcCCCcc
Confidence 455444 4889999999999864 3777763 478899999999999 998898775542
Q ss_pred --hceeeeecccchhhHHH
Q 018550 295 --LWMTIVLGHCTSTFFRQ 311 (354)
Q Consensus 295 --~~~i~a~GD~~~~~~~~ 311 (354)
..+|||+||+.....+|
T Consensus 263 TsvpGifAaGDv~~~~~rq 281 (305)
T COG0492 263 TSVPGIFAAGDVADKNGRQ 281 (305)
T ss_pred cCCCCEEEeEeeccCcccE
Confidence 23499999999976554
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=255.17 Aligned_cols=306 Identities=19% Similarity=0.189 Sum_probs=196.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccccc-ccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (354)
++||+||||||+|+++|..|+++|.+|+|||+++.+||+|.+. +|.|.+.+...... ..+.. .+. +
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~--------gcipsk~l~~~~~~~~~~~~-~~~----~ 71 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT--------GTIPSKALREAVLRLIGFNQ-NPL----Y 71 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc--------CCCCHHHHHHHHHHHHHHhh-hhh----h
Confidence 4799999999999999999999999999999988899999874 78887655433221 11110 000 0
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
..++.. ...++.++.+ ++.+.+.+.+++ ++.+ ++..++ . +.+.+...++.
T Consensus 72 ~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~--~-~~~~v~~~~g~-- 132 (461)
T PRK05249 72 SSYRVK-----------LRITFADLLARADHVINKQVEVRRGQYERNRVD--LIQG-RARFVD--P-HTVEVECPDGE-- 132 (461)
T ss_pred cccCCc-----------CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEE-EEEEec--C-CEEEEEeCCCc--
Confidence 011100 0011233332 334445556666 5553 344432 2 45566554432
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
...+.||+||+||| +.|+.|+.++... ...+++..... ....+++++|||+|++|+|+|..|++.|.+|+++.++
T Consensus 133 ~~~~~~d~lviATG--s~p~~p~~~~~~~--~~v~~~~~~~~-~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~ 207 (461)
T PRK05249 133 VETLTADKIVIATG--SRPYRPPDVDFDH--PRIYDSDSILS-LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTR 207 (461)
T ss_pred eEEEEcCEEEEcCC--CCCCCCCCCCCCC--CeEEcHHHhhc-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 24789999999999 8888887665432 12233222222 2235799999999999999999999999999999997
Q ss_pred CC----------ccccccCCCCC-CeEEecceeEEecCC-c--EEEccCcEEecCEEEEcccCCCccCccccc--Cchhh
Q 018550 230 VA----------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGLTGTSTTTLFL--KPMAL 293 (354)
Q Consensus 230 ~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~ 293 (354)
+. +.+.+.+++.+ +++.++.++++..++ . +++.+|+++++|.|++|+|++ ||++++ ...+.
T Consensus 208 ~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~---p~~~~l~l~~~g~ 284 (461)
T PRK05249 208 DRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT---GNTDGLNLENAGL 284 (461)
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC---ccccCCCchhhCc
Confidence 74 12233344445 889999999987432 2 455678889999999999999 776643 22111
Q ss_pred ----------------hhceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhhhc
Q 018550 294 ----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFLH 351 (354)
Q Consensus 294 ----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (354)
...+|||+|||+.. ...++...+.++.+......+ +. ++--+++.+|+.+.+
T Consensus 285 ~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~-----~p~~i~~~p~ia~vG 358 (461)
T PRK05249 285 EADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEATAHLI-ED-----IPTGIYTIPEISSVG 358 (461)
T ss_pred EecCCCcEeeCCCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCCccccc-CC-----CCeEEECCCcceEec
Confidence 12459999999863 356666777787654332222 22 222345555666666
Q ss_pred cc
Q 018550 352 KT 353 (354)
Q Consensus 352 ~~ 353 (354)
.|
T Consensus 359 ~t 360 (461)
T PRK05249 359 KT 360 (461)
T ss_pred CC
Confidence 55
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=256.22 Aligned_cols=307 Identities=17% Similarity=0.182 Sum_probs=197.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEee---------CCCccceeecCCCCCCCCCCCCCCCCcccccccccchhc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK---------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~---------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (354)
.+||+||||||+|+.+|..++++|.+|.|||+ .+.+||+|.+. ||.|.+.++...........
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~--------GciPsK~l~~~a~~~~~~~~ 96 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIR--------GCVPKKILVYGATFGGEFED 96 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeecc--------CchhHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999996 35799999884 99999887665433221111
Q ss_pred cccccccccCCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEE
Q 018550 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKV 141 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v 141 (354)
........... .-.++..+.++ +++.....+++ +.. .++..++. ..+.+
T Consensus 97 ~~~~G~~~~~~--------------~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~i~-g~a~~vd~---~~v~V 156 (499)
T PLN02507 97 AKNYGWEINEK--------------VDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK--LYE-GEGKIVGP---NEVEV 156 (499)
T ss_pred HHhcCcccCCC--------------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEE-EEEEEecC---CEEEE
Confidence 11111100000 00112333322 23333344555 433 45555533 55667
Q ss_pred EEeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCC
Q 018550 142 KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221 (354)
Q Consensus 142 ~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~ 221 (354)
+..++. ...+.||+||+||| +.|+.|.++|.+.. ..+....... ..+++++|||+|++|+|+|..+++.|+
T Consensus 157 ~~~~g~--~~~~~~d~LIIATG--s~p~~p~ipG~~~~----~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~ 227 (499)
T PLN02507 157 TQLDGT--KLRYTAKHILIATG--SRAQRPNIPGKELA----ITSDEALSLE-ELPKRAVVLGGGYIAVEFASIWRGMGA 227 (499)
T ss_pred EeCCCc--EEEEEcCEEEEecC--CCCCCCCCCCccce----echHHhhhhh-hcCCeEEEECCcHHHHHHHHHHHHcCC
Confidence 665543 34689999999999 88998988886431 1221111111 246899999999999999999999999
Q ss_pred EEEEEEecCC-----cc-----ccccCCCCC-CeEEecceeEEecC-Cc--EEEccCcEEecCEEEEcccCCCccCcccc
Q 018550 222 EVHIASRSVA-----DE-----THEKQPGYD-NMWLHSMVERANED-GT--VVFRNGRVVSADVIMHCTGLTGTSTTTLF 287 (354)
Q Consensus 222 ~v~~~~r~~~-----~~-----~~~~l~~~~-~~~~~~~v~~v~~~-~~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~ 287 (354)
+|+++++.+. +. ..+.|++.+ +++.++.|+++..+ +. +.+.+|+++++|.|++|+|++ ||+++
T Consensus 228 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~---pn~~~ 304 (499)
T PLN02507 228 TVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRA---PNTKR 304 (499)
T ss_pred eEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCC---CCCCC
Confidence 9999999763 11 122344455 89999999999743 22 555677889999999999999 66665
Q ss_pred c--Cchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhh
Q 018550 288 L--KPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFC 343 (354)
Q Consensus 288 l--~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (354)
+ +..+.. ..+|||+|||+.. ...|+...+.++.+..... +. ...++..+++
T Consensus 305 l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~~~~---~~--~~~~p~~if~ 379 (499)
T PLN02507 305 LNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTK---PD--YENVACAVFC 379 (499)
T ss_pred CCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCCCCCc---CC--CCCCCeEEEC
Confidence 3 222211 1339999999972 3566667777776533211 11 1122333555
Q ss_pred hhhhhhhccc
Q 018550 344 LVELCFLHKT 353 (354)
Q Consensus 344 ~~~~~~~~~~ 353 (354)
.+|+.+.+.|
T Consensus 380 ~p~ia~vGlt 389 (499)
T PLN02507 380 IPPLSVVGLS 389 (499)
T ss_pred CCccEEEeCC
Confidence 5666555544
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=253.85 Aligned_cols=302 Identities=17% Similarity=0.205 Sum_probs=192.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+||||||+|+++|..|+++|.+|+|+|++ .+||+|.+. +|.|.+.++..........+.+. +++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~~~~--~g~~ 70 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNV--------GCVPKKVMWYASDLAERMHDAAD--YGFY 70 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceecc--------CcCccHHHHHHHHHHHHHhHHhh--cCcc
Confidence 589999999999999999999999999999995 799999984 99999877665432222222111 1111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.. . . .-.++.++. +.+...+++.+++ ++.++.+. . +..++.+. +
T Consensus 71 ~~-~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~-~-----~~~~v~v~-~---- 125 (450)
T TIGR01421 71 QN-L-E----------NTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVD--VIFGHARF-T-----KDGTVEVN-G---- 125 (450)
T ss_pred cC-C-c----------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE-c-----cCCEEEEC-C----
Confidence 00 0 0 001112222 2233444455666 66654331 1 12234442 2
Q ss_pred EEEEeCEEEEeeCCCCCcccC-CCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 151 EEETFDAVVVCNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
..+.||+||+||| +.|+.| .++|.+.. ..+...... ...+++++|||+|++|+|+|..|++.|++|+++.+.
T Consensus 126 ~~~~~d~vIiAtG--s~p~~p~~i~g~~~~----~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~ 198 (450)
T TIGR01421 126 RDYTAPHILIATG--GKPSFPENIPGAELG----TDSDGFFAL-EELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRH 198 (450)
T ss_pred EEEEeCEEEEecC--CCCCCCCCCCCCcee----EcHHHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 2789999999999 888888 78876421 122122111 124689999999999999999999999999999987
Q ss_pred CC----------ccccccCCCCC-CeEEecceeEEecC--C--cEEEccC-cEEecCEEEEcccCCCccCccccc--Cch
Q 018550 230 VA----------DETHEKQPGYD-NMWLHSMVERANED--G--TVVFRNG-RVVSADVIMHCTGLTGTSTTTLFL--KPM 291 (354)
Q Consensus 230 ~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~--~--~v~~~~g-~~~~~D~vi~a~G~~~~~p~~~~l--~~~ 291 (354)
+. +...+.|++.+ +++.++.++++..+ + .+++++| +++++|.||+|+|++ ||++++ ...
T Consensus 199 ~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~---pn~~~l~l~~~ 275 (450)
T TIGR01421 199 ERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRK---PNTKGLGLENV 275 (450)
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCC---cCcccCCcccc
Confidence 64 12233444555 88999999999753 2 2566677 579999999999999 776643 221
Q ss_pred hh----------------hhceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhh
Q 018550 292 AL----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCF 349 (354)
Q Consensus 292 ~~----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (354)
+. ...+|||+|||+.. ...|+...+.++.+...... .....++.-+++.+|+..
T Consensus 276 g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~----~~~~~~p~~~f~~p~ia~ 351 (450)
T TIGR01421 276 GIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDK----LDYNNVPTVVFSHPPIGT 351 (450)
T ss_pred CcEECCCCcEEeCCCCcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcCCCCCc----cCcccCCeEEeCCCceEE
Confidence 11 12459999999873 34566666777754321111 111223334555666655
Q ss_pred hccc
Q 018550 350 LHKT 353 (354)
Q Consensus 350 ~~~~ 353 (354)
.+.|
T Consensus 352 vGlt 355 (450)
T TIGR01421 352 IGLT 355 (450)
T ss_pred EeCC
Confidence 5543
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-32 Score=236.88 Aligned_cols=247 Identities=23% Similarity=0.311 Sum_probs=184.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||++|+++|..|++.|++|+|||+++ +||.|..... ...++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~------------------------------~~~~~~ 49 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTE------------------------------VENYPG 49 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeeccc------------------------------ccccCC
Confidence 589999999999999999999999999999875 6776654210 000111
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
++. .....++..++.+.+++++++ +++ ++|++++..+ +.|.+.+.++. ++.||+||+||
T Consensus 50 ~~~-------------~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~v~~~~-~~~~v~~~~~~----~~~~d~liiAt 108 (300)
T TIGR01292 50 FPE-------------GISGPELMEKMKEQAVKFGAE--IIY-EEVIKVDLSD-RPFKVKTGDGK----EYTAKAVIIAT 108 (300)
T ss_pred CCC-------------CCChHHHHHHHHHHHHHcCCe--EEE-EEEEEEEecC-CeeEEEeCCCC----EEEeCEEEECC
Confidence 110 012267888999999999988 777 8999998876 77888876653 89999999999
Q ss_pred CCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----ccccccC
Q 018550 163 GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQ 238 (354)
Q Consensus 163 G~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~~l 238 (354)
| +.++.|.+||...+.+...+.....+.....+++++|||+|.+|+|+|..|++.+++|+++.+.+. +...+.+
T Consensus 109 G--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l 186 (300)
T TIGR01292 109 G--ASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRL 186 (300)
T ss_pred C--CCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHH
Confidence 9 778888888876654444444434344445789999999999999999999999999999999774 2233444
Q ss_pred CCC-C-CeEEecceeEEecCCc---EEEcc---C--cEEecCEEEEcccCCCccCcccccCchhh---------------
Q 018550 239 PGY-D-NMWLHSMVERANEDGT---VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMAL--------------- 293 (354)
Q Consensus 239 ~~~-~-~~~~~~~v~~v~~~~~---v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~--------------- 293 (354)
.+. + +++.++.++++..++. +++.+ + .++++|++++|+|++ |+.++++....
T Consensus 187 ~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~---~~~~~l~~~~~~~~~g~i~v~~~~~t 263 (300)
T TIGR01292 187 RKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHE---PNTELLKGLLELDEGGYIVTDEGMRT 263 (300)
T ss_pred HhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCC---CChHHHHHhheecCCCcEEECCCCcc
Confidence 444 4 7888999999986543 44432 3 578999999999999 77666654311
Q ss_pred hhceeeeecccch
Q 018550 294 LLWMTIVLGHCTS 306 (354)
Q Consensus 294 ~~~~i~a~GD~~~ 306 (354)
...+||++|||+.
T Consensus 264 ~~~~vya~GD~~~ 276 (300)
T TIGR01292 264 SVPGVFAAGDVRD 276 (300)
T ss_pred CCCCEEEeecccC
Confidence 1245999999997
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=251.86 Aligned_cols=307 Identities=19% Similarity=0.264 Sum_probs=199.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||+|+++|..|++.|.+|+|||++ .+||+|.+ .||.|.+.++.+..........+.. ++++
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n--------~GciPsk~l~~~a~~~~~~~~~~~~-~g~~ 75 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN--------IGCVPSKIMIRAAHIAHLRRESPFD-DGLS 75 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec--------CCccccHHHHHHHHHHHHHhhcccc-CCcc
Confidence 479999999999999999999999999999985 79999987 3999998776654433322222100 0111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------------CCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-------------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
.. ..-+++..+.++.++....+ +++ +. ..++..++. +.+++++.++.
T Consensus 76 ~~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~-~g~v~~id~---~~~~V~~~~g~- 135 (468)
T PRK14694 76 AQ-------------APVVDRSALLAQQQARVEELRESKYQSILRENAAIT--VL-NGEARFVDE---RTLTVTLNDGG- 135 (468)
T ss_pred cC-------------CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeE--EE-EEEEEEecC---CEEEEEecCCC-
Confidence 00 00012345554444433221 333 33 345666643 66888877653
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| +.|+.|+++|.+.. ..+++...... ...+++++|||+|++|+|+|..|++.|.+|+++.+
T Consensus 136 -~~~~~~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~ 209 (468)
T PRK14694 136 -EQTVHFDRAFIGTG--ARPAEPPVPGLAET--PYLTSTSALEL-DHIPERLLVIGASVVALELAQAFARLGSRVTVLAR 209 (468)
T ss_pred -eEEEECCEEEEeCC--CCCCCCCCCCCCCC--ceEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 24799999999999 89999999997653 12222221111 12468999999999999999999999999999987
Q ss_pred cCC---------ccccccCCCCC-CeEEecceeEEecCCc-EEE-ccCcEEecCEEEEcccCCCccCcccccC--chhhh
Q 018550 229 SVA---------DETHEKQPGYD-NMWLHSMVERANEDGT-VVF-RNGRVVSADVIMHCTGLTGTSTTTLFLK--PMALL 294 (354)
Q Consensus 229 ~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~~-v~~-~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~~~~ 294 (354)
... +...+.+++.+ +++.++.+++++.++. +.+ .++.++++|.||+|+|.. ||++++. ..+..
T Consensus 210 ~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~---pn~~~l~l~~~g~~ 286 (468)
T PRK14694 210 SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRT---PNTENLNLESIGVE 286 (468)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCC---CCcCCCCchhcCcc
Confidence 532 12233344455 8889999999975543 332 234579999999999999 7766542 11111
Q ss_pred ---------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhhhccc
Q 018550 295 ---------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFLHKT 353 (354)
Q Consensus 295 ---------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (354)
..+|||+|||+.. ...++...+.++.+.....++ +.++--+++.+|+...+.|
T Consensus 287 ~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~~~~~~------~~~p~~~~~~p~~a~vGlt 360 (468)
T PRK14694 287 TERGAIRIDEHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASLDL------SAMPEVIFTDPQVATVGLS 360 (468)
T ss_pred cCCCeEeeCCCcccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCCccccc------CCCCeEEECCCCeEEeeCC
Confidence 2349999999863 345666677777654433222 1222225566666665554
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=251.62 Aligned_cols=275 Identities=17% Similarity=0.228 Sum_probs=186.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhc-cccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN-LPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (354)
.+||+||||||+|+++|..|+++|.+|+|||+. .+||+|.+ .+|.|.+.++........... .+. +++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n--------~gciP~k~l~~~~~~~~~~~~~~~~--~g~ 72 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN--------VGCVPKKLMWYGAQIAEAFHDYAPG--YGF 72 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc--------cCcchHHHHHHHHHHHHHHHhHHHh--cCC
Confidence 479999999999999999999999999999985 89999987 499999877665433222222 111 111
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHH-----------HHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEV-----------LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.. ... -.++..+ .+.+.+...+.+++ +..+ ++..++ ..++++ ++
T Consensus 73 ~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~v~-----~~~v~~-~g--- 127 (450)
T PRK06116 73 DV-TEN------------KFDWAKLIANRDAYIDRLHGSYRNGLENNGVD--LIEG-FARFVD-----AHTVEV-NG--- 127 (450)
T ss_pred CC-CCC------------CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc-----CCEEEE-CC---
Confidence 00 000 0011222 22333344455676 5553 454442 234555 33
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
..+.||+||+||| +.|+.|+++|.+. .+++...... ...+++++|||+|.+|+|+|..|++.|.+|+++.+.
T Consensus 128 -~~~~~d~lViATG--s~p~~p~i~g~~~----~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 199 (450)
T PRK06116 128 -ERYTADHILIATG--GRPSIPDIPGAEY----GITSDGFFAL-EELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG 199 (450)
T ss_pred -EEEEeCEEEEecC--CCCCCCCCCCcce----eEchhHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 3799999999999 8899998888653 2222222221 224689999999999999999999999999999987
Q ss_pred CC----------ccccccCCCCC-CeEEecceeEEecC--C--cEEEccCcEEecCEEEEcccCCCccCccccc--Cchh
Q 018550 230 VA----------DETHEKQPGYD-NMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGLTGTSTTTLFL--KPMA 292 (354)
Q Consensus 230 ~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~--~--~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~ 292 (354)
+. ....+.+++.+ +++.++.|+++..+ + .+.+.+|+++++|.||+|+|++ |+++.+ ...+
T Consensus 200 ~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~---p~~~~l~l~~~g 276 (450)
T PRK06116 200 DAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGRE---PNTDGLGLENAG 276 (450)
T ss_pred CCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCC---cCCCCCCchhcC
Confidence 64 12233444555 88999999999743 3 2566788889999999999999 666642 2211
Q ss_pred h----------------hhceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 293 L----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 293 ~----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
. ...+|||+|||+.. ...|+...+.++.+..
T Consensus 277 ~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 329 (450)
T PRK06116 277 VKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNK 329 (450)
T ss_pred ceECCCCcEecCCCCCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCCC
Confidence 1 12459999999852 3566777788886643
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=236.93 Aligned_cols=249 Identities=16% Similarity=0.235 Sum_probs=184.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|+++|.++++||+. ..||.+...... .
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~~---------------------------------~ 51 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEV---------------------------------E 51 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCceE---------------------------------C
Confidence 479999999999999999999999999999964 678777652110 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+++.. ....+...+.+++.+....++.. ++. .+|..++..+ +.|+++...+ .+.||+||+|
T Consensus 52 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~v~~~~-~~~~v~~~~~-----~~~~d~vilA 112 (321)
T PRK10262 52 NWPGD----------PNDLTGPLLMERMHEHATKFETE--IIF-DHINKVDLQN-RPFRLTGDSG-----EYTCDALIIA 112 (321)
T ss_pred CCCCC----------CCCCCHHHHHHHHHHHHHHCCCE--EEe-eEEEEEEecC-CeEEEEecCC-----EEEECEEEEC
Confidence 11110 01122367788888888888776 555 3677787765 7777765432 6899999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--------cc
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--------DE 233 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--------~~ 233 (354)
|| +.|+.|++||.+.+.+..++.+..++.....+++++|||+|.+|+|+|..|++.+++|+++++++. +.
T Consensus 113 tG--~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~ 190 (321)
T PRK10262 113 TG--ASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKR 190 (321)
T ss_pred CC--CCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHH
Confidence 99 788889999977666666666666555556789999999999999999999999999999999763 22
Q ss_pred ccccCCCCC-CeEEecceeEEecCC----cEEEccC------cEEecCEEEEcccCCCccCcccccCch-----------
Q 018550 234 THEKQPGYD-NMWLHSMVERANEDG----TVVFRNG------RVVSADVIMHCTGLTGTSTTTLFLKPM----------- 291 (354)
Q Consensus 234 ~~~~l~~~~-~~~~~~~v~~v~~~~----~v~~~~g------~~~~~D~vi~a~G~~~~~p~~~~l~~~----------- 291 (354)
.++.+++.+ +++.++.++++.+++ .|++.++ +++++|.||+++|++ ||.+++...
T Consensus 191 ~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~---p~~~l~~~~l~~~~g~i~vd 267 (321)
T PRK10262 191 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS---PNTAIFEGQLELENGYIKVQ 267 (321)
T ss_pred HHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc---cChhHhhccccccCCEEEEC
Confidence 334455555 888999999998654 2555442 479999999999999 666654310
Q ss_pred --------hhhhceeeeecccchhh
Q 018550 292 --------ALLLWMTIVLGHCTSTF 308 (354)
Q Consensus 292 --------~~~~~~i~a~GD~~~~~ 308 (354)
.....+|||+|||+...
T Consensus 268 ~~~~~~~~~t~~~~VyA~GD~~~~~ 292 (321)
T PRK10262 268 SGIHGNATQTSIPGVFAAGDVMDHI 292 (321)
T ss_pred CCCcccccccCCCCEEECeeccCCC
Confidence 11124599999999643
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=250.00 Aligned_cols=305 Identities=16% Similarity=0.146 Sum_probs=191.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (354)
++||+||||||+|+.+|..|+++|.+|+|+|+.+.+||+|.+. +|.|.+.++.... +..+. ........+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~--------gciP~K~l~~~a~~~~~~~-~~~~~g~~~ 74 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNV--------GCIPSKALLHVAKVIEEAK-ALAEHGIVF 74 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCC--------CcccHHHHHHHHHHHHHHh-hhhhcCccc
Confidence 5899999999999999999999999999999977899999884 8999987765432 22221 111111110
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.. ...++..+.++.. ..++..+++ +.. .++..++ . +...+...++ .
T Consensus 75 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~-g~a~~~~--~-~~v~v~~~~g--~ 131 (471)
T PRK06467 75 GE---------------PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVT--VVN-GLGKFTG--G-NTLEVTGEDG--K 131 (471)
T ss_pred CC---------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEcc--C-CEEEEecCCC--c
Confidence 00 0011233333332 233444666 554 3333332 2 3444544333 1
Q ss_pred eEEEEeCEEEEeeCCCCCccc-CCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 150 VEEETFDAVVVCNGHFSVPRL-AQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~-p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| ++|+. |.+++... ..+.+....... ..+++++|||+|++|+|+|..|++.|.+|+++.+
T Consensus 132 ~~~~~~d~lViATG--s~p~~~p~~~~~~~---~v~~~~~~~~~~-~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~ 205 (471)
T PRK06467 132 TTVIEFDNAIIAAG--SRPIQLPFIPHDDP---RIWDSTDALELK-EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM 205 (471)
T ss_pred eEEEEcCEEEEeCC--CCCCCCCCCCCCCC---cEEChHHhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEec
Confidence 24799999999999 77864 44444322 223332222221 2468999999999999999999999999999998
Q ss_pred cCC-----c-----cccccCCCCCCeEEecceeEEecCC-c--EEEccC----cEEecCEEEEcccCCCccCcccccC--
Q 018550 229 SVA-----D-----ETHEKQPGYDNMWLHSMVERANEDG-T--VVFRNG----RVVSADVIMHCTGLTGTSTTTLFLK-- 289 (354)
Q Consensus 229 ~~~-----~-----~~~~~l~~~~~~~~~~~v~~v~~~~-~--v~~~~g----~~~~~D~vi~a~G~~~~~p~~~~l~-- 289 (354)
.+. + ...+.+++..++++++.++.++.++ . +.++++ +++++|.||+|+|++ ||++++.
T Consensus 206 ~~~il~~~d~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~---pn~~~l~~~ 282 (471)
T PRK06467 206 FDQVIPAADKDIVKVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRV---PNGKLLDAE 282 (471)
T ss_pred CCCCCCcCCHHHHHHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccc---ccCCccChh
Confidence 764 1 2223343336788899999887432 2 444442 469999999999999 7776542
Q ss_pred chh----------------hhhceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhh
Q 018550 290 PMA----------------LLLWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVEL 347 (354)
Q Consensus 290 ~~~----------------~~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (354)
..+ ....+|||+|||+.. ...++...+.++.+....+.+ .. ++--+++.+|+
T Consensus 283 ~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~~~~~~~--~~----~p~~~~~~p~i 356 (471)
T PRK06467 283 KAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDP--KV----IPSIAYTEPEV 356 (471)
T ss_pred hcCceECCCCcEeeCCCcccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCCCCCCCC--CC----CCeEEECCCce
Confidence 111 112459999999863 355666777777664333222 11 22224556666
Q ss_pred hhhccc
Q 018550 348 CFLHKT 353 (354)
Q Consensus 348 ~~~~~~ 353 (354)
.+.+.|
T Consensus 357 a~vGlt 362 (471)
T PRK06467 357 AWVGLT 362 (471)
T ss_pred eEEECC
Confidence 655544
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=248.35 Aligned_cols=307 Identities=17% Similarity=0.198 Sum_probs=193.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+|||+|++|+++|..|+++|.+|+++|+++.+||+|.+. ||.|.+.++....+.......+. +++.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~--------GciPsk~l~~~a~~~~~~~~~~~--~g~~ 85 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV--------GCVPSKILIRAAQLAHQQRSNPF--DGVE 85 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc--------cccccHHHHHHHHHHHHHhhccc--cCcc
Confidence 5899999999999999999999999999999987899999984 99999887765544333322221 1111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH------------Hh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR------------EF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
.. .+. .++..+..+...... .. +++ +.. .+. ...+.+.+.+...++.
T Consensus 86 ~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~-G~a---~f~~~~~v~v~~~~g~- 145 (479)
T PRK14727 86 AV-APS------------IDRGLLLHQQQARVEELRHAKYQSILDGNPALT--LLK-GYA---RFKDGNTLVVRLHDGG- 145 (479)
T ss_pred cC-CCc------------cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeE--EEE-EEE---EEecCCEEEEEeCCCc-
Confidence 00 000 012333222222211 11 233 222 122 2222255666655542
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| +.|+.|+++|.... ....+..... ....+++++|||+|++|+|+|..|++.|++|+++.+
T Consensus 146 -~~~~~~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~ 219 (479)
T PRK14727 146 -ERVLAADRCLIATG--STPTIPPIPGLMDT--PYWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILAR 219 (479)
T ss_pred -eEEEEeCEEEEecC--CCCCCCCCCCcCcc--ceecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEc
Confidence 24799999999999 89999999987542 1122111111 122468999999999999999999999999999988
Q ss_pred cCC---------ccccccCCCCC-CeEEecceeEEecCC-cEEE-ccCcEEecCEEEEcccCCCccCccccc--Cchhhh
Q 018550 229 SVA---------DETHEKQPGYD-NMWLHSMVERANEDG-TVVF-RNGRVVSADVIMHCTGLTGTSTTTLFL--KPMALL 294 (354)
Q Consensus 229 ~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~v~~-~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~~ 294 (354)
... ....+.+++.+ +++.++.++++..++ .+.+ .++.++++|.||+|+|+. ||++++ +..+..
T Consensus 220 ~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~---pn~~~l~l~~~g~~ 296 (479)
T PRK14727 220 STLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRH---ANTHDLNLEAVGVT 296 (479)
T ss_pred CCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCC---CCccCCCchhhCce
Confidence 532 12233444555 888899999987433 2332 233579999999999999 776653 221111
Q ss_pred ----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhhhcc
Q 018550 295 ----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFLHK 352 (354)
Q Consensus 295 ----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (354)
..+|||+|||+.. +..++...+.++.+....+.+ ...+.-.++.+|+.+.+.
T Consensus 297 ~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~------~~~p~~~~~~p~ia~vGl 370 (479)
T PRK14727 297 TDTSGAIVVNPAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGNATLDL------SAMPAVIFTDPQVATVGL 370 (479)
T ss_pred ecCCCCEEECCCeecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCCCccccc------ccCCcEEEecCceeeeeC
Confidence 1349999999963 345666777788765433322 112222455566665555
Q ss_pred c
Q 018550 353 T 353 (354)
Q Consensus 353 ~ 353 (354)
|
T Consensus 371 t 371 (479)
T PRK14727 371 S 371 (479)
T ss_pred C
Confidence 4
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=247.84 Aligned_cols=283 Identities=18% Similarity=0.190 Sum_probs=183.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||+|+++|..|+++|.+|+|+|+.. +||+|.+. +|.|.+.++.............
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~--------gciP~k~l~~~~~~~~~~~~~~------- 67 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR--------GCIPSKALLHAAERADEARHSE------- 67 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec--------ccCCcHHHHHhhhHHHHHHHHH-------
Confidence 5899999999999999999999999999999975 99999874 8999887665443222111111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.+.+.. ....+.+..+.++ +...+++.+++ +..+ +++.++. ..+.+...++.
T Consensus 68 ~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~~~~---~~~~v~~~~~~--- 130 (462)
T PRK06416 68 DFGIKA--------ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVD--IIRG-EAKLVDP---NTVRVMTEDGE--- 130 (462)
T ss_pred hcCccc--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEccC---CEEEEecCCCc---
Confidence 111100 0001233445554 33344455666 5553 4444422 34445432221
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..+.||+||+||| +.|..| ||.+.......+....... ...+++++|||+|++|+|+|..|++.|.+|+++.+.+
T Consensus 131 ~~~~~d~lViAtG--s~p~~~--pg~~~~~~~v~~~~~~~~~-~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 131 QTYTAKNIILATG--SRPREL--PGIEIDGRVIWTSDEALNL-DEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred EEEEeCEEEEeCC--CCCCCC--CCCCCCCCeEEcchHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 4799999999999 677654 3443211122222222221 2356899999999999999999999999999999876
Q ss_pred C----------ccccccCCCCC-CeEEecceeEEecCC-c--EEEccC---cEEecCEEEEcccCCCccCccccc--Cch
Q 018550 231 A----------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFRNG---RVVSADVIMHCTGLTGTSTTTLFL--KPM 291 (354)
Q Consensus 231 ~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~~g---~~~~~D~vi~a~G~~~~~p~~~~l--~~~ 291 (354)
. +...+.+++.+ +++.++.|+++..++ . +.+.++ +++++|.||+|+|++ |+++++ +..
T Consensus 206 ~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~---p~~~~l~l~~~ 282 (462)
T PRK06416 206 RILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR---PNTENLGLEEL 282 (462)
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc---cCCCCCCchhc
Confidence 4 11222344444 889999999998543 2 444555 679999999999999 666654 121
Q ss_pred h---------------hhhceeeeecccchh------hHHHHHHHhhhccCCCcc
Q 018550 292 A---------------LLLWMTIVLGHCTST------FFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 292 ~---------------~~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~ 325 (354)
+ ....+|||+|||+.. ...|+...+.++.+....
T Consensus 283 gl~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~ 337 (462)
T PRK06416 283 GVKTDRGFIEVDEQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNPHP 337 (462)
T ss_pred CCeecCCEEeECCCCccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCCCC
Confidence 1 112459999999862 356667778888764333
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=248.53 Aligned_cols=270 Identities=15% Similarity=0.218 Sum_probs=175.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+++||+|||||++|+.+|..+++.|.+|+|||++ .+||+|.+ .||+|.+.++..........+........
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln--------~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~ 117 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN--------VGCVPKKIMFNAASIHDILENSRHYGFDT 117 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc--------cCCCCCchhhhhcccHHHHHHHHhcCCCc
Confidence 3579999999999999999999999999999995 79999998 49999999887665433222222111110
Q ss_pred c-CCCCCccCCCCCCCCCCCCCHHHH----HHHHHHHHHHhCCcceEEeceE-EEE---EE------------EeCCCcE
Q 018550 81 Q-AYPFVARNYEGSVDLRRYPGHEEV----LRYLQNFAREFGVDQVVRLHTE-VLN---AR------------LVESNKW 139 (354)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~v~~~~~-v~~---i~------------~~~~~~~ 139 (354)
. ...+.. ..-...++ .+.+.+..++.+++ +..+.- +.+ +. ..+++..
T Consensus 118 ~~~~d~~~----------~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~ 185 (561)
T PTZ00058 118 QFSFNLPL----------LVERRDKYIRRLNDIYRQNLKKDNVE--YFEGKGSLLSENQVLIKKVSQVDGEADESDDDEV 185 (561)
T ss_pred cCccCHHH----------HHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEecCCEEEeeccccccccccccccccc
Confidence 0 011100 00001112 22233344445666 444321 111 00 0000222
Q ss_pred EEE------EeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHH
Q 018550 140 KVK------SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIK 213 (354)
Q Consensus 140 ~v~------~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a 213 (354)
++. ..++ ..+.||+||+||| +.|+.|+++|.+. .+.+..+.... .+++++|||+|.+|+|+|
T Consensus 186 ~v~~~~~~~~~~g----~~i~ad~lVIATG--S~P~~P~IpG~~~----v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A 253 (561)
T PTZ00058 186 TIVSAGVSQLDDG----QVIEGKNILIAVG--NKPIFPDVKGKEF----TISSDDFFKIK--EAKRIGIAGSGYIAVELI 253 (561)
T ss_pred eeeeccceecCCC----cEEECCEEEEecC--CCCCCCCCCCcee----EEEHHHHhhcc--CCCEEEEECCcHHHHHHH
Confidence 231 1222 3799999999999 8999999988642 23333333222 279999999999999999
Q ss_pred HHHhccCCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCC--c--EEEccC-cEEecCEEEEccc
Q 018550 214 RDLAGFAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDG--T--VVFRNG-RVVSADVIMHCTG 277 (354)
Q Consensus 214 ~~l~~~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~--~--v~~~~g-~~~~~D~vi~a~G 277 (354)
..+++.|++|+++.+.+. +...+.+++.+ +++.+..+.++++++ . +.+.++ +++++|.|++|+|
T Consensus 254 ~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~G 333 (561)
T PTZ00058 254 NVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVG 333 (561)
T ss_pred HHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcC
Confidence 999999999999999764 12233444555 899999999998542 2 333344 5799999999999
Q ss_pred CCCccCcccccCchh--hh---------------hceeeeecccch
Q 018550 278 LTGTSTTTLFLKPMA--LL---------------LWMTIVLGHCTS 306 (354)
Q Consensus 278 ~~~~~p~~~~l~~~~--~~---------------~~~i~a~GD~~~ 306 (354)
++ ||++++.... .. ..+|||+|||+.
T Consensus 334 r~---Pn~~~L~l~~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~ 376 (561)
T PTZ00058 334 RS---PNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCM 376 (561)
T ss_pred CC---CCccccCccccceecCCCeEEECcCCccCCCCEEEeEeccC
Confidence 99 7777653211 10 234999999988
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=246.23 Aligned_cols=306 Identities=18% Similarity=0.185 Sum_probs=190.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchhc-ccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVN-LPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 79 (354)
++||+|||+||||++||..+++.|.+|+|||+.+.+||+|.+. +|+|.+.++.... +...... ... ++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~--------gciPsK~l~~~~~~~~~~~~~~~~~--~g 72 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV--------GCMPSKALLHASELYEAASGGEFAH--LG 72 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC--------cccccHHHHHHhHHHHHHhhhhhhh--cC
Confidence 3799999999999999999999999999999877899999984 9999998776543 3222210 111 11
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
+. ... -.++.++.++ +....+..+++ +..+. . ++. ++..+.+...++.
T Consensus 73 i~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-a-~~~--~~~~v~v~~~~g~- 131 (466)
T PRK06115 73 IE---VKP-----------TLNLAQMMKQKDESVEALTKGVEFLFRKNKVD--WIKGW-G-RLD--GVGKVVVKAEDGS- 131 (466)
T ss_pred cc---ccC-----------ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEE-E-EEc--cCCEEEEEcCCCc-
Confidence 10 000 0011222222 22223333454 44322 1 222 2134445444432
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| ++|. .++|........+++...... ...+++++|||+|++|+|+|..+++.|.+|+++.+
T Consensus 132 -~~~~~~d~lVIATG--s~p~--~ipg~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~ 205 (466)
T PRK06115 132 -ETQLEAKDIVIATG--SEPT--PLPGVTIDNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEY 205 (466)
T ss_pred -eEEEEeCEEEEeCC--CCCC--CCCCCCCCCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeC
Confidence 24799999999999 6664 345543211122332222221 23579999999999999999999999999999998
Q ss_pred cCC----------ccccccCCCCC-CeEEecceeEEecCC-c--EEEc---cC--cEEecCEEEEcccCCCccCcccccC
Q 018550 229 SVA----------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFR---NG--RVVSADVIMHCTGLTGTSTTTLFLK 289 (354)
Q Consensus 229 ~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~---~g--~~~~~D~vi~a~G~~~~~p~~~~l~ 289 (354)
.+. ...++.+++.+ +++.++.+++++.++ . +.+. +| +++++|.||+|+|++ ||++.+.
T Consensus 206 ~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~---pn~~~l~ 282 (466)
T PRK06115 206 LDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR---PYTQGLG 282 (466)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc---cccccCC
Confidence 764 12233444555 899999999998542 2 3332 23 579999999999999 7766532
Q ss_pred --chhhh---------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhh
Q 018550 290 --PMALL---------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVE 346 (354)
Q Consensus 290 --~~~~~---------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (354)
..+.. ..+|||+|||+.. ...|+...+.++.+.....++ ..++..+++.+|
T Consensus 283 ~~~~g~~~~~~G~~vd~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~~~~~~------~~~p~~~~t~p~ 356 (466)
T PRK06115 283 LETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKAGEVNY------GLIPGVIYTRPE 356 (466)
T ss_pred cccccceeCCCCEEECCCeecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCC------CCCCeEEECCcc
Confidence 21111 1339999999963 345666667777654332222 223334566677
Q ss_pred hhhhccc
Q 018550 347 LCFLHKT 353 (354)
Q Consensus 347 ~~~~~~~ 353 (354)
+.+.+.|
T Consensus 357 ia~vGlt 363 (466)
T PRK06115 357 VATVGKT 363 (466)
T ss_pred cEEeeCC
Confidence 7776655
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=247.81 Aligned_cols=277 Identities=19% Similarity=0.233 Sum_probs=183.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+||||||+|+++|..|++.|.+|+|+|+. .+||+|.+ .+|.|.+.++.............. +++.
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~--------~gciPsk~l~~~a~~~~~~~~~~~--~g~~ 73 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN--------TGCVPTKTLIASARAAHLARRAAE--YGVS 73 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec--------cccCcHHHHHHHHHHHHHHHHHHh--cCcc
Confidence 479999999999999999999999999999985 78999987 499998877765533322222111 1110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYL-----------QNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
... ....++..+.++. ....++. +++ ++.++.+. + +..++... +
T Consensus 74 ---~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--v~~g~~~~-~-----~~~~v~v~-~--- 129 (463)
T PRK06370 74 ---VGG---------PVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVD--VFRGHARF-E-----SPNTVRVG-G--- 129 (463)
T ss_pred ---cCc---------cCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcE--EEEEEEEE-c-----cCCEEEEC-c---
Confidence 000 0001223333333 2333333 555 55544331 1 22344442 2
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.++.||+||+||| +.|+.|+++|.+.. ..+.+...... ...+++++|||+|++|+|+|..|++.|.+|+++.+.
T Consensus 130 -~~~~~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~~~~-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~ 203 (463)
T PRK06370 130 -ETLRAKRIFINTG--ARAAIPPIPGLDEV--GYLTNETIFSL-DELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERG 203 (463)
T ss_pred -EEEEeCEEEEcCC--CCCCCCCCCCCCcC--ceEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 3789999999999 89999999987652 22333222221 235789999999999999999999999999999997
Q ss_pred CC----------ccccccCCCCC-CeEEecceeEEecCCc---EEEc--c-CcEEecCEEEEcccCCCccCccccc--Cc
Q 018550 230 VA----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFR--N-GRVVSADVIMHCTGLTGTSTTTLFL--KP 290 (354)
Q Consensus 230 ~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~--~-g~~~~~D~vi~a~G~~~~~p~~~~l--~~ 290 (354)
+. +...+.+++.+ +++.++.|.++..++. +.+. + +.++++|.||+|+|++ ||++.+ ..
T Consensus 204 ~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~---pn~~~l~l~~ 280 (463)
T PRK06370 204 PRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV---PNTDDLGLEA 280 (463)
T ss_pred CCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC---cCCCCcCchh
Confidence 74 12233344555 8899999999985432 3332 2 3579999999999999 666622 22
Q ss_pred hhh----------------hhceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 291 MAL----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 291 ~~~----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
.+. ...+|||+|||+.. ...|+...+.++.+.
T Consensus 281 ~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 281 AGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred hCceECCCCcEeECcCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 111 12349999999873 355666777787654
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-31 Score=247.08 Aligned_cols=249 Identities=20% Similarity=0.249 Sum_probs=190.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||+|+++|..|+++|++++|+++ .+||+|.....+.+ +.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~~~~~------------------------------~~ 258 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTMGIEN------------------------------FI 258 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccCcccc------------------------------cC
Confidence 47999999999999999999999999999986 48888864211110 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.++ +....++.+++.+.+++++++ ++++++|.++...+ +.|.+.+.++. ++.||.||+|
T Consensus 259 ~~~--------------~~~~~~l~~~l~~~~~~~gv~--i~~~~~V~~I~~~~-~~~~V~~~~g~----~i~a~~vViA 317 (517)
T PRK15317 259 SVP--------------ETEGPKLAAALEEHVKEYDVD--IMNLQRASKLEPAA-GLIEVELANGA----VLKAKTVILA 317 (517)
T ss_pred CCC--------------CCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CeEEEEECCCC----EEEcCEEEEC
Confidence 111 123378999999999999988 88899999998876 78888877664 7999999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc----ccccc
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHEK 237 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~----~~~~~ 237 (354)
|| +.++.|.+||...+.+..++.+...+....++++|+|||+|++|+|+|..|+..+++|+++.+.+.. ...+.
T Consensus 318 tG--~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~ 395 (517)
T PRK15317 318 TG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDK 395 (517)
T ss_pred CC--CCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHH
Confidence 99 7788888998776666666655555545567899999999999999999999999999999997641 12233
Q ss_pred CCC--CCCeEEecceeEEecC-Cc---EEEcc---C--cEEecCEEEEcccCCCccCcccccCchhhh------------
Q 018550 238 QPG--YDNMWLHSMVERANED-GT---VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMALL------------ 294 (354)
Q Consensus 238 l~~--~~~~~~~~~v~~v~~~-~~---v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------------ 294 (354)
+.+ ..+++.++.++++.++ +. +.+.+ + +++++|.|++|+|++ ||+++++.....
T Consensus 396 l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~---p~~~~l~~~v~~~~~g~i~vd~~l 472 (517)
T PRK15317 396 LRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLV---PNTEWLKGTVELNRRGEIIVDARG 472 (517)
T ss_pred HhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCc---cCchHHhhheeeCCCCcEEECcCC
Confidence 433 3389999999999866 33 44443 3 368999999999999 777776542111
Q ss_pred ---hceeeeecccchhh
Q 018550 295 ---LWMTIVLGHCTSTF 308 (354)
Q Consensus 295 ---~~~i~a~GD~~~~~ 308 (354)
..+|||+|||+...
T Consensus 473 ~Ts~p~IyAaGDv~~~~ 489 (517)
T PRK15317 473 ATSVPGVFAAGDCTTVP 489 (517)
T ss_pred CCCCCCEEECccccCCC
Confidence 13499999998743
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=247.88 Aligned_cols=283 Identities=19% Similarity=0.227 Sum_probs=183.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
+||+||||||+|+++|..|+++|.+|+|||++ .+||+|.+ .+|.|.+.+++............ +++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~-~~GG~c~n--------~gciPsk~l~~~~~~~~~~~~~~---~g~~~ 68 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG-PLGGTCVN--------VGCVPSKMLLRAAEVAHYARKPP---FGGLA 68 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-cccCCeee--------ecEEccHHHHHHHHHHHHhhccC---ccccc
Confidence 68999999999999999999999999999986 59999987 49999988776543322222211 11110
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHH-----HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRY-----LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
..... ++...+....++... +.+.+++.+++ +..+ ++..+ +..++.+.++. ..+.+|+
T Consensus 69 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~~-----~~~~v~v~~g~---~~~~~~~ 131 (463)
T TIGR02053 69 ATVAV------DFGELLEGKREVVEELRHEKYEDVLSSYGVD--YLRG-RARFK-----DPKTVKVDLGR---EVRGAKR 131 (463)
T ss_pred CCCcc------CHHHHHHHHHHHHHHHhhhhHHHHHHhCCcE--EEEE-EEEEc-----cCCEEEEcCCe---EEEEeCE
Confidence 00000 000000111222222 22334555666 5443 33322 23455554431 3689999
Q ss_pred EEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC------
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------ 231 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~------ 231 (354)
||+||| +.|+.|+++|.+.. ..+++...... ...+++++|||+|.+|+|+|..|++.|.+|+++++.+.
T Consensus 132 lIiATG--s~p~~p~i~G~~~~--~~~~~~~~~~~-~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d 206 (463)
T TIGR02053 132 FLIATG--ARPAIPPIPGLKEA--GYLTSEEALAL-DRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREE 206 (463)
T ss_pred EEEcCC--CCCCCCCCCCcccC--ceECchhhhCc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccC
Confidence 999999 88999999987653 22333222222 12468999999999999999999999999999999763
Q ss_pred ----ccccccCCCCC-CeEEecceeEEecCCc---EEEcc---CcEEecCEEEEcccCCCccCccc-c-cCchhhh----
Q 018550 232 ----DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRN---GRVVSADVIMHCTGLTGTSTTTL-F-LKPMALL---- 294 (354)
Q Consensus 232 ----~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~---g~~~~~D~vi~a~G~~~~~p~~~-~-l~~~~~~---- 294 (354)
....+.+++.+ +++.++.|+++..++. +.+.+ ++++++|.||+|+|++ |+++ + +...+..
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~---p~~~~l~l~~~g~~~~~~ 283 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRR---PNTDGLGLEKAGVKLDER 283 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCC---cCCCCCCccccCCEECCC
Confidence 11223344454 8899999999975432 34432 3679999999999999 6666 2 2222111
Q ss_pred ------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 295 ------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 295 ------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
..+|||+|||+.. ...|+...+.++.+.
T Consensus 284 G~i~vd~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 284 GGILVDETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred CcEeECCCccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 2349999999873 345666777787664
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=243.96 Aligned_cols=302 Identities=18% Similarity=0.196 Sum_probs=191.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+|||+||+|..+|.. ..|.+|.|+|++ .+||+|.+ .||+|.|.++..........+.+.. ++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n--------~GCiPsK~l~~~a~~~~~~~~~~~~--g~~ 67 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLN--------VGCIPTKMFVYAADVARTIREAARL--GVD 67 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccC--------cCcchhHHHHHHHHHHHHHHHHHhC--Ccc
Confidence 4799999999999998866 469999999984 79999998 4999999887765433222222111 110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------------CCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-------------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
. ...-.++.++.++.....+++ +++ +.. .+..-+ +..+|.+.++.
T Consensus 68 -----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~a~~~-----~~~~V~v~~g~- 125 (451)
T PRK07846 68 -----A--------ELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNID--VYR-GHARFI-----GPKTLRTGDGE- 125 (451)
T ss_pred -----C--------CCCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcE--EEE-EEEEEe-----cCCEEEECCCC-
Confidence 0 000123355555554444332 222 222 122222 33456665543
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
++.||+||+||| ++|+.|+++|.... ....+.+.... ...+++++|||+|++|+|+|..|++.|.+|+++.+
T Consensus 126 ---~~~~d~lViATG--s~p~~p~i~g~~~~--~~~~~~~~~~l-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 197 (451)
T PRK07846 126 ---EITADQVVIAAG--SRPVIPPVIADSGV--RYHTSDTIMRL-PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNR 197 (451)
T ss_pred ---EEEeCEEEEcCC--CCCCCCCCCCcCCc--cEEchHHHhhh-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEc
Confidence 799999999999 89999998885431 11222222111 22468999999999999999999999999999999
Q ss_pred cCC-----cc----ccccC-CCCCCeEEecceeEEecCC-c--EEEccCcEEecCEEEEcccCCCccCcccccC--chhh
Q 018550 229 SVA-----DE----THEKQ-PGYDNMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGLTGTSTTTLFLK--PMAL 293 (354)
Q Consensus 229 ~~~-----~~----~~~~l-~~~~~~~~~~~v~~v~~~~-~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~~~ 293 (354)
.+. +. .+.++ +...++++++.+++++.++ . +.+.+|+++++|.|++|+|++ ||++++. ..+.
T Consensus 198 ~~~ll~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~---pn~~~l~~~~~gl 274 (451)
T PRK07846 198 SGRLLRHLDDDISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRV---PNGDLLDAAAAGV 274 (451)
T ss_pred CCccccccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCc---cCccccCchhcCc
Confidence 774 11 11122 2234788899999997543 2 556678899999999999999 7777642 2111
Q ss_pred h----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhhhc
Q 018550 294 L----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFLH 351 (354)
Q Consensus 294 ~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (354)
. ..+|||+|||+.. ...|+...+.++.+...... ......+--+++.+|+.+.+
T Consensus 275 ~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~----~~~~~~p~~if~~p~ia~vG 350 (451)
T PRK07846 275 DVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIA----SDHRFVPAAVFTHPQIASVG 350 (451)
T ss_pred eECCCCcEeECCCcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCCCCccc----cCCCCCCeEEECCCCcEeEe
Confidence 1 2349999999974 34556666777755422111 11122233345556666555
Q ss_pred cc
Q 018550 352 KT 353 (354)
Q Consensus 352 ~~ 353 (354)
.|
T Consensus 351 lt 352 (451)
T PRK07846 351 LT 352 (451)
T ss_pred CC
Confidence 54
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=249.37 Aligned_cols=310 Identities=16% Similarity=0.223 Sum_probs=192.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC--------CccceeecCCCCCCCCCCCCCCCCcccccccccchhcc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~--------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
.+||+||||||+|+.||..|+++|.+|+|+|+.. .+||+|.+ .+|.|.+.++..........+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n--------~gciPsK~l~~~a~~~~~~~~~ 76 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVN--------VGCVPKKLMHYAANIGSIFHHD 76 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceecc--------ccccchHHHHHHHHHHHHHHhH
Confidence 3799999999999999999999999999999631 48999987 4999987655543322211110
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceE---EEEEE---EeCCCcEEEEEeecC
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTE---VLNAR---LVESNKWKVKSRKKD 147 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~---v~~i~---~~~~~~~~v~~~~g~ 147 (354)
. ..+++.. + . -.++.++.+++....++++.. +....+ |+-+. ... +.++|.+.+.
T Consensus 77 ~-~~~g~~~-~------------~-~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~i~g~a~~~-~~~~v~v~~~- 137 (499)
T PTZ00052 77 S-QMYGWKT-S------------S-SFNWGKLVTTVQNHIRSLNFS--YRTGLRSSKVEYINGLAKLK-DEHTVSYGDN- 137 (499)
T ss_pred H-hcCCCCC-C------------C-CcCHHHHHHHHHHHHHHhhHH--HHHHhhhcCcEEEEEEEEEc-cCCEEEEeeC-
Confidence 0 0111110 0 0 113366777776666554322 111111 11111 111 3345554332
Q ss_pred CceEEEEeCEEEEeeCCCCCcccCC-CCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEE
Q 018550 148 DVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226 (354)
Q Consensus 148 ~~~~~~~~d~vIlAtG~~s~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~ 226 (354)
+....+.||+||+||| +.|+.|. ++|...+ .+.+...... ...+++++|||+|++|+|+|..|++.|.+|+++
T Consensus 138 ~~~~~i~~d~lIIATG--s~p~~p~~i~G~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli 211 (499)
T PTZ00052 138 SQEETITAKYILIATG--GRPSIPEDVPGAKEY---SITSDDIFSL-SKDPGKTLIVGASYIGLETAGFLNELGFDVTVA 211 (499)
T ss_pred CCceEEECCEEEEecC--CCCCCCCCCCCccce---eecHHHHhhh-hcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 1124799999999999 8888874 8876542 1222222111 124679999999999999999999999999999
Q ss_pred EecCC---------ccccccCCCCC-CeEEecceeEEecCC-c--EEEccCcEEecCEEEEcccCCCccCcccccC--ch
Q 018550 227 SRSVA---------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGLTGTSTTTLFLK--PM 291 (354)
Q Consensus 227 ~r~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~ 291 (354)
.++.. +...+.|++.+ +++.++.++++...+ . +.+.+|+++++|.||+|+|++ ||++++. ..
T Consensus 212 ~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~---pn~~~l~l~~~ 288 (499)
T PTZ00052 212 VRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK---PDIKGLNLNAI 288 (499)
T ss_pred EcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC---CCccccCchhc
Confidence 87432 12233444555 888888888887432 2 566788889999999999999 7777652 22
Q ss_pred hh---------------hhceeeeecccchh-------hHHHHHHHhhhccCCCcc-cccCCCCCccccCCchhhhhhhh
Q 018550 292 AL---------------LLWMTIVLGHCTST-------FFRQSWHQAFHLLGYHRR-LSLSPSLNSRASGLPVFCLVELC 348 (354)
Q Consensus 292 ~~---------------~~~~i~a~GD~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 348 (354)
+. ...+|||+|||+.. ...|+...+.++.+.... ..+ ..++--+++.+|+.
T Consensus 289 g~~~~~~G~ii~~~~~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~------~~~p~~ift~p~ia 362 (499)
T PTZ00052 289 GVHVNKSNKIIAPNDCTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDY------TFIPTTIFTPIEYG 362 (499)
T ss_pred CcEECCCCCEeeCCCcCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCCCCCcCcc------ccCCeEEecCCcce
Confidence 11 13459999999852 235555667777653321 122 22333355556665
Q ss_pred hhccc
Q 018550 349 FLHKT 353 (354)
Q Consensus 349 ~~~~~ 353 (354)
..+.|
T Consensus 363 ~vGlt 367 (499)
T PTZ00052 363 ACGYS 367 (499)
T ss_pred eecCC
Confidence 55544
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=249.33 Aligned_cols=281 Identities=18% Similarity=0.182 Sum_probs=183.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEee---------CCCccceeecCCCCCCCCCCCCCCCCcccccccccchhc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK---------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~---------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (354)
.+||+|||+|++|+.+|..++++|.+|+|+|+ ...+||+|.+ .||+|.|.++...........
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n--------~GCiPsK~l~~aa~~~~~~~~ 150 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL--------RGCVPKKLLVYASKYSHEFEE 150 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC--------cchHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999996 2468999998 499999988765544332222
Q ss_pred ccccccccc---CCCCCccCCCCCCCCCCCCC----HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee
Q 018550 73 LPRELMGFQ---AYPFVARNYEGSVDLRRYPG----HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK 145 (354)
Q Consensus 73 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~ 145 (354)
......... .+.|.. .+-. ..++..++.+.+++.+++ ++. .+++.++. .++.+ +
T Consensus 151 ~~~~g~~~~~~~~~d~~~----------~~~~k~~~~~~l~~~~~~~l~~~gV~--~i~-G~a~~vd~-----~~V~v-~ 211 (558)
T PLN02546 151 SRGFGWKYETEPKHDWNT----------LIANKNAELQRLTGIYKNILKNAGVT--LIE-GRGKIVDP-----HTVDV-D 211 (558)
T ss_pred hhhcCcccCCCCCCCHHH----------HHHHHHHHHHHHHHHHHHHHHhCCcE--EEE-eEEEEccC-----CEEEE-C
Confidence 211111100 111100 0000 022334444445555666 444 34444432 23444 2
Q ss_pred cCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEE
Q 018550 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI 225 (354)
Q Consensus 146 g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~ 225 (354)
+ ..+.||+||+||| +.|..|+++|.+.. +....... ....+++++|||+|++|+|+|..|++.+.+|++
T Consensus 212 G----~~~~~D~LVIATG--s~p~~P~IpG~~~v----~~~~~~l~-~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtl 280 (558)
T PLN02546 212 G----KLYTARNILIAVG--GRPFIPDIPGIEHA----IDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHV 280 (558)
T ss_pred C----EEEECCEEEEeCC--CCCCCCCCCChhhc----cCHHHHHh-ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 3 2789999999999 89999999986531 22211111 123578999999999999999999999999999
Q ss_pred EEecCC-----c-----cccccCCCCC-CeEEecceeEEec--CCcEEE--ccCcEEecCEEEEcccCCCccCccccc--
Q 018550 226 ASRSVA-----D-----ETHEKQPGYD-NMWLHSMVERANE--DGTVVF--RNGRVVSADVIMHCTGLTGTSTTTLFL-- 288 (354)
Q Consensus 226 ~~r~~~-----~-----~~~~~l~~~~-~~~~~~~v~~v~~--~~~v~~--~~g~~~~~D~vi~a~G~~~~~p~~~~l-- 288 (354)
+.+.+. + ...+.|++.+ +++.++.++++.. ++.+.+ .+++...+|.||+|+|++ ||++++
T Consensus 281 v~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~---Pnt~~L~l 357 (558)
T PLN02546 281 FIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRK---PNTKNLGL 357 (558)
T ss_pred EEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccc---cCCCcCCh
Confidence 998764 1 1223444555 8899999999874 333333 344445599999999999 777653
Q ss_pred Cchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 289 KPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 289 ~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
+..+.. ..+|||+|||+.. ...|+...+.++.+..
T Consensus 358 e~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~ 414 (558)
T PLN02546 358 EEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNE 414 (558)
T ss_pred hhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 222221 1339999999873 3455566677776654
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-31 Score=244.07 Aligned_cols=282 Identities=18% Similarity=0.234 Sum_probs=182.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeC--------CCccceeecCCCCCCCCCCCCCCCCcccccccccchhc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKG--------EQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~--------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (354)
.+||+|||+||+|..+|..+++. |.+|.|||++ ..+||+|.+ .||+|.|.+++.+.......+
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln--------~GCiPsK~l~~~a~~~~~~~~ 74 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN--------VGCVPKKLMVTGAQYMDTLRE 74 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC--------cCCccHHHHHHHHHHHHHHHH
Confidence 58999999999999999999996 9999999973 479999998 499999998876643322222
Q ss_pred cccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH-----------H-hCCcceEEeceEEEEEEEeCCCcEE
Q 018550 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR-----------E-FGVDQVVRLHTEVLNARLVESNKWK 140 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~-~~~~~~v~~~~~v~~i~~~~~~~~~ 140 (354)
... +++.. .. ...-.++..+.++.....+ . .+++ +.. .+..-+ +..+
T Consensus 75 ~~~--~gi~~-~~----------~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~--~i~-G~a~f~-----~~~~ 133 (486)
T TIGR01423 75 SAG--FGWEF-DR----------SSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLT--FFL-GWGALE-----DKNV 133 (486)
T ss_pred hhc--cCeec-cC----------CccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeE--EEE-EEEEEc-----cCCE
Confidence 111 11100 00 0000122333333332222 2 1333 333 221111 2234
Q ss_pred EEEee---cCC-ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHH
Q 018550 141 VKSRK---KDD-VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDL 216 (354)
Q Consensus 141 v~~~~---g~~-~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l 216 (354)
|.+.. +.+ ..+.+.||+||+||| +.|+.|+++|.+.. ..+...... ...+++++|||+|++|+|+|..+
T Consensus 134 v~V~~~~~~~~~~~~~~~~d~lIIATG--s~p~~p~i~G~~~~----~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~~ 206 (486)
T TIGR01423 134 VLVRESADPKSAVKERLQAEHILLATG--SWPQMLGIPGIEHC----ISSNEAFYL-DEPPRRVLTVGGGFISVEFAGIF 206 (486)
T ss_pred EEEeeccCCCCCcceEEECCEEEEecC--CCCCCCCCCChhhe----echhhhhcc-ccCCCeEEEECCCHHHHHHHHHH
Confidence 44432 111 125799999999999 88999999886531 222111111 12568999999999999999877
Q ss_pred hcc---CCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecC--C--cEEEccCcEEecCEEEEcccC
Q 018550 217 AGF---AKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGL 278 (354)
Q Consensus 217 ~~~---g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~--~--~v~~~~g~~~~~D~vi~a~G~ 278 (354)
... |.+|+++.+.+. +...+.|++.+ +++.++.++++..+ + .+.+++++++++|.||+|+|+
T Consensus 207 ~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 207 NAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred HHhccCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 554 899999998774 22334455555 88999999999743 2 266677889999999999999
Q ss_pred CCccCcccccC--chhhh----------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 279 TGTSTTTLFLK--PMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 279 ~~~~p~~~~l~--~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
+ ||++++. ..+.. ..+|||+|||+.. +..|+...+.++.+.
T Consensus 287 ~---Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 287 V---PRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred C---cCcccCCchhhCceECCCCCEecCCCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 9 7666542 11111 2349999999974 345666677777654
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-31 Score=250.26 Aligned_cols=283 Identities=19% Similarity=0.265 Sum_probs=185.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||+|+++|..|+++|.+|.|||++ .+||+|.+. ||.|.+.++.+..........+.+ .++
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~--------gciPsk~l~~~~~~~~~~~~~~~~-~g~- 166 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNV--------GCVPSKIMIRAAHIAHLRRESPFD-GGI- 166 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecccc--------CccccHHHHHHHHHHHHHhccccc-CCc-
Confidence 379999999999999999999999999999996 899999984 999998877655433322222110 011
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH------------Hh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR------------EF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
.... .-..+..+.++...... .. +++ +.. .++..++ . +.+.+...++.
T Consensus 167 --~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~~--~-~~~~v~~~~g~- 227 (561)
T PRK13748 167 --AATV----------PTIDRSRLLAQQQARVDELRHAKYEGILDGNPAIT--VLH-GEARFKD--D-QTLIVRLNDGG- 227 (561)
T ss_pred --cCCC----------CccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeE--EEE-EEEEEec--C-CEEEEEeCCCc-
Confidence 0000 00122444444333222 21 333 333 3444332 2 55666654442
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| +.|+.|+++|.... ..+.+..... ....+++++|||+|++|+|+|..|.+.|++|+++.+
T Consensus 228 -~~~~~~d~lviAtG--s~p~~p~i~g~~~~--~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~ 301 (561)
T PRK13748 228 -ERVVAFDRCLIATG--ASPAVPPIPGLKET--PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILAR 301 (561)
T ss_pred -eEEEEcCEEEEcCC--CCCCCCCCCCCCcc--ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence 24799999999999 88999999987642 1122211111 123568999999999999999999999999999998
Q ss_pred cCC---------ccccccCCCCC-CeEEecceeEEecCC-cEEE-ccCcEEecCEEEEcccCCCccCccccc--Cchhhh
Q 018550 229 SVA---------DETHEKQPGYD-NMWLHSMVERANEDG-TVVF-RNGRVVSADVIMHCTGLTGTSTTTLFL--KPMALL 294 (354)
Q Consensus 229 ~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~v~~-~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~~ 294 (354)
... ....+.+++.+ +++.++.+++++.++ .+.+ .++.++++|.||+|+|++ ||++++ ...+..
T Consensus 302 ~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~---pn~~~l~l~~~g~~ 378 (561)
T PRK13748 302 STLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRA---PNTRSLALDAAGVT 378 (561)
T ss_pred CccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCC---cCCCCcCchhcCce
Confidence 532 12233344555 888999999987443 2333 233479999999999999 777653 222211
Q ss_pred ----------------hceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 295 ----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 295 ----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
..+|||+|||+.. +..++...+.++.+..
T Consensus 379 ~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 429 (561)
T PRK13748 379 VNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGD 429 (561)
T ss_pred ECCCCCEeECCCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCCC
Confidence 2349999999863 3456666777776544
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=241.74 Aligned_cols=311 Identities=18% Similarity=0.189 Sum_probs=196.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (354)
+++|+|||+|++|+.+|..|+++|.+|+++|++ .+||+|.+. +|.|.|.++.... +..+. .........
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~--------gciPsK~l~~~a~~~~~~~-~~~~~g~~~ 70 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLT--------DCVPSKTLIATAEVRTELR-RAAELGIRF 70 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccccc--------CCcchHHHHHHHHHHHHHH-HHHhCCccc
Confidence 468999999999999999999999999999986 689999984 9999988776542 22222 111110000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHH-----------HHHHHHHHHHhCCcceEEeceEEEEEE--EeCCCcEEEEEeecC
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEV-----------LRYLQNFAREFGVDQVVRLHTEVLNAR--LVESNKWKVKSRKKD 147 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~v~~~~~v~~i~--~~~~~~~~v~~~~g~ 147 (354)
.. + .....++..+ .+.+.+.+++.+++ ++. .++..++ .+. +...+...++.
T Consensus 71 ~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~~~-g~~~~~~~~~~~-~~v~V~~~~g~ 134 (466)
T PRK07845 71 ID-D-----------GEARVDLPAVNARVKALAAAQSADIRARLEREGVR--VIA-GRGRLIDPGLGP-HRVKVTTADGG 134 (466)
T ss_pred cc-C-----------cccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEE-EEEEEeecccCC-CEEEEEeCCCc
Confidence 00 0 0000011222 23344445556777 554 4455543 222 44555554432
Q ss_pred CceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEE
Q 018550 148 DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (354)
Q Consensus 148 ~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~ 227 (354)
.+++.||+||+||| +.|+.|+.++... ...+++....+.. ..+++++|||+|.+|+|+|..|++.|.+|++++
T Consensus 135 --~~~~~~d~lViATG--s~p~~~p~~~~~~--~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~ 207 (466)
T PRK07845 135 --EETLDADVVLIATG--ASPRILPTAEPDG--ERILTWRQLYDLD-ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVS 207 (466)
T ss_pred --eEEEecCEEEEcCC--CCCCCCCCCCCCC--ceEEeehhhhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 24789999999999 7887665443321 1233333332222 246899999999999999999999999999999
Q ss_pred ecCC----------ccccccCCCCC-CeEEecceeEEecC-Cc--EEEccCcEEecCEEEEcccCCCccCccccc--Cch
Q 018550 228 RSVA----------DETHEKQPGYD-NMWLHSMVERANED-GT--VVFRNGRVVSADVIMHCTGLTGTSTTTLFL--KPM 291 (354)
Q Consensus 228 r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~-~~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~ 291 (354)
+.+. +...+.|++.+ +++.++.+++++.+ +. +.+.+|+++++|.||+|+|++ ||++++ .+.
T Consensus 208 ~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~---pn~~~l~l~~~ 284 (466)
T PRK07845 208 SRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSV---PNTAGLGLEEA 284 (466)
T ss_pred cCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCC---cCCCCCCchhh
Confidence 8764 11233444555 88889999999643 22 555678899999999999999 666642 222
Q ss_pred hhh----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhh
Q 018550 292 ALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCF 349 (354)
Q Consensus 292 ~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (354)
+.. ..+|||+|||+.. +..|+...+.|+.+.... ......++-.+++.+|+.+
T Consensus 285 gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~-----~~~~~~~p~~vf~~p~~a~ 359 (466)
T PRK07845 285 GVELTPSGHITVDRVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEAVS-----PLRLKTVASNVFTRPEIAT 359 (466)
T ss_pred CceECCCCcEeECCCcccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCCCCC-----cCCCCCCCEEEeCCCccee
Confidence 211 1349999999973 346666777787654321 0112223334555666666
Q ss_pred hccc
Q 018550 350 LHKT 353 (354)
Q Consensus 350 ~~~~ 353 (354)
.+.|
T Consensus 360 vGlt 363 (466)
T PRK07845 360 VGVS 363 (466)
T ss_pred ecCC
Confidence 5554
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-31 Score=242.17 Aligned_cols=299 Identities=20% Similarity=0.238 Sum_probs=188.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC-CccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++||+||||||+|+++|..|+++|.+|+|||+.+ .+||+|.+. +|.|.+.+.+....
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~--------gcip~k~l~~~~~~-------------- 60 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINI--------GCIPTKTLVHDAQQ-------------- 60 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeec--------cccchHHHHHHhcc--------------
Confidence 4799999999999999999999999999999975 479999874 78877654433211
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHH-----HHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
...+.. .+.....+.++++. ..+..+++ +.. .++..++. +.+.+...++. .++.|
T Consensus 61 -~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~-g~~~~i~~---~~~~v~~~~g~---~~~~~ 120 (441)
T PRK08010 61 -HTDFVR----------AIQRKNEVVNFLRNKNFHNLADMPNID--VID-GQAEFINN---HSLRVHRPEGN---LEIHG 120 (441)
T ss_pred -CCCHHH----------HHHHHHHHHHHHHHhHHHHHhhcCCcE--EEE-EEEEEecC---CEEEEEeCCCe---EEEEe
Confidence 000000 00000222232221 11222555 443 34555432 55666655442 36899
Q ss_pred CEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----
Q 018550 156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---- 231 (354)
Q Consensus 156 d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---- 231 (354)
|+||+||| ++|+.|+++|.+...+ .+....... ....+++++|||+|++|+|+|..|++.|.+|+++++.+.
T Consensus 121 d~lviATG--s~p~~p~i~G~~~~~~-v~~~~~~~~-~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 121 EKIFINTG--AQTVVPPIPGITTTPG-VYDSTGLLN-LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR 196 (441)
T ss_pred CEEEEcCC--CcCCCCCCCCccCCCC-EEChhHhhc-ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence 99999999 8899999999765432 333322222 223568999999999999999999999999999998764
Q ss_pred ------ccccccCCCCC-CeEEecceeEEecCC-cEEEc-cCcEEecCEEEEcccCCCccCcccccC--chhhh------
Q 018550 232 ------DETHEKQPGYD-NMWLHSMVERANEDG-TVVFR-NGRVVSADVIMHCTGLTGTSTTTLFLK--PMALL------ 294 (354)
Q Consensus 232 ------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~v~~~-~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~~~~------ 294 (354)
....+.+++.+ +++.++.|+++..++ .+.+. ++.++++|.|++|+|++ ||++++. ..+..
T Consensus 197 ~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~---pn~~~l~~~~~gl~~~~~G~ 273 (441)
T PRK08010 197 EDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQ---PATASLHPENAGIAVNERGA 273 (441)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCC---cCCCCcCchhcCcEECCCCc
Confidence 11223445555 889999999998543 24332 23468999999999999 7666532 21111
Q ss_pred ----------hceeeeecccchhh------HHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhhhccc
Q 018550 295 ----------LWMTIVLGHCTSTF------FRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFLHKT 353 (354)
Q Consensus 295 ----------~~~i~a~GD~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (354)
..+|||+|||+... ..++...+.++.+...... .....++.-+++.+|+...+.|
T Consensus 274 i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~~~~~~----~~~~~~p~~~~~~p~ia~vGlt 344 (441)
T PRK08010 274 IVVDKYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRST----DDRKNVPYSVFMTPPLSRVGMT 344 (441)
T ss_pred EEECCCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCCCCccc----CccCCCCEEEECCCCceeeeCC
Confidence 13499999999842 3444455666655322111 1111222334555666655544
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=237.30 Aligned_cols=200 Identities=33% Similarity=0.596 Sum_probs=180.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCc-EEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
..+|+|||||++|+++|+.|.++|.. +++|||++.+||+|..+ .|+.+..+.|....++
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~--------------------ry~~l~~~~p~~~~~~ 67 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN--------------------RYPGLRLDSPKWLLGF 67 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc--------------------cCCceEECCchheecc
Confidence 47899999999999999999999998 99999999999999985 7888888999888888
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEEEEEeecCCceEEEEeCEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+.+++. +...|+....+.+|+.++++++++...+.+++.|..+.++++ +.|+|++.++... ++.+|.||
T Consensus 68 ~~~p~~--------~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~--~~~a~~vV 137 (443)
T COG2072 68 PFLPFR--------WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTG--ELTADFVV 137 (443)
T ss_pred CCCccC--------CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCee--eEecCEEE
Confidence 888774 234566667799999999999999888899999988888654 5899999987632 27799999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+|||.++.|++|.++|.+.|.+..+|+.++++...+++|+|+|||+|.||++++.+|++.|++|+++.|++.
T Consensus 138 ~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 138 VATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred EeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=242.89 Aligned_cols=248 Identities=19% Similarity=0.248 Sum_probs=184.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|++.|.+|+|+++ .+||++.....+. .+.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~~~------------------------------~~~ 259 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVGIE------------------------------NLI 259 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcCcc------------------------------ccc
Confidence 37999999999999999999999999999985 5788776421100 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.++. ....++.+.+.+.+.+++++ ++.+++|+++...+ +.+.+++.++. .+.||++|+|
T Consensus 260 ~~~~--------------~~~~~l~~~l~~~l~~~gv~--i~~~~~V~~I~~~~-~~~~v~~~~g~----~i~~d~lIlA 318 (515)
T TIGR03140 260 SVPY--------------TTGSQLAANLEEHIKQYPID--LMENQRAKKIETED-GLIVVTLESGE----VLKAKSVIVA 318 (515)
T ss_pred ccCC--------------CCHHHHHHHHHHHHHHhCCe--EEcCCEEEEEEecC-CeEEEEECCCC----EEEeCEEEEC
Confidence 1111 12377888888888888988 88899999998766 67888877654 7999999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc----ccccc
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHEK 237 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~----~~~~~ 237 (354)
|| +.++.|.++|...+....++.+...+.....+++++|||+|++|+|+|..|++.+++|+++.+.+.. ...+.
T Consensus 319 tG--a~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~ 396 (515)
T TIGR03140 319 TG--ARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDK 396 (515)
T ss_pred CC--CCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHH
Confidence 99 6788888888655544444444333433456899999999999999999999999999999987641 12333
Q ss_pred CCC-CC-CeEEecceeEEecC-Cc---EEEcc---C--cEEecCEEEEcccCCCccCcccccCchhhh------------
Q 018550 238 QPG-YD-NMWLHSMVERANED-GT---VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMALL------------ 294 (354)
Q Consensus 238 l~~-~~-~~~~~~~v~~v~~~-~~---v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------------ 294 (354)
+.+ .+ +++.++.++++.++ +. |++.+ + +++++|.|++|+|+. ||+++++.....
T Consensus 397 l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~---Pn~~~l~~~~~~~~~G~I~vd~~~ 473 (515)
T TIGR03140 397 LKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV---PNTEWLKDAVELNRRGEIVIDERG 473 (515)
T ss_pred HhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCc---CCchHHhhhcccCCCCeEEECCCC
Confidence 443 34 88999999999865 32 55543 2 468999999999999 777776543111
Q ss_pred ---hceeeeecccchh
Q 018550 295 ---LWMTIVLGHCTST 307 (354)
Q Consensus 295 ---~~~i~a~GD~~~~ 307 (354)
..+|||+|||+..
T Consensus 474 ~Ts~p~IyAaGDv~~~ 489 (515)
T TIGR03140 474 RTSVPGIFAAGDVTTV 489 (515)
T ss_pred CCCCCCEEEcccccCC
Confidence 2349999999874
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=241.72 Aligned_cols=289 Identities=17% Similarity=0.174 Sum_probs=181.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (354)
.+||+||||||+|+++|..|+++|.+|+|+|+. .+||+|.+ .+|.|.+.+++.. .+..+.. ........
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~--------~gciPsk~l~~~a~~~~~~~~-~~~~g~~~ 73 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH--------KGCIPSKALLHSAEVFQTAKK-ASPFGISV 73 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc--------CCcCchHHHHHHHHHHHHHHH-HHhcCccC
Confidence 489999999999999999999999999999995 89999998 4999998876654 2333222 11100000
Q ss_pred c--CCCCCccCCCCCCCCCCCCCHHHHHHH----HHHHHHHhCCcceEEeceEEEEEEEe----CCCcEEEEEeecCCce
Q 018550 81 Q--AYPFVARNYEGSVDLRRYPGHEEVLRY----LQNFAREFGVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDVV 150 (354)
Q Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~v~~~~~v~~i~~~----~~~~~~v~~~~g~~~~ 150 (354)
. ...|.. ..-...++.++ ..+.+++.+++ +.. .++..++.+ .++.+.+.+.++. .
T Consensus 74 ~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~-g~a~~i~~~~~~~~~~~~~v~~~~g~--~ 138 (472)
T PRK05976 74 SGPALDFAK----------VQERKDGIVDRLTKGVAALLKKGKID--VFH-GIGRILGPSIFSPMPGTVSVETETGE--N 138 (472)
T ss_pred CCCccCHHH----------HHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEeCCCCCcCCceEEEEEeCCCc--e
Confidence 0 001000 00000122222 22334455676 555 456666543 0025666655542 2
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++.||+||+||| +.|+.++ +........+++...... ...+++++|||+|++|+|+|..|++.|.+|+++.+.+
T Consensus 139 ~~~~~d~lViATG--s~p~~~p--~~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 139 EMIIPENLLIATG--SRPVELP--GLPFDGEYVISSDEALSL-ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred EEEEcCEEEEeCC--CCCCCCC--CCCCCCceEEcchHhhCc-cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 4799999999999 6775432 222111112332222221 2246899999999999999999999999999999876
Q ss_pred C----------ccccccCCCCC-CeEEecceeEEec--CCcE---EEccC--cEEecCEEEEcccCCCccCcccccC--c
Q 018550 231 A----------DETHEKQPGYD-NMWLHSMVERANE--DGTV---VFRNG--RVVSADVIMHCTGLTGTSTTTLFLK--P 290 (354)
Q Consensus 231 ~----------~~~~~~l~~~~-~~~~~~~v~~v~~--~~~v---~~~~g--~~~~~D~vi~a~G~~~~~p~~~~l~--~ 290 (354)
. ....+.+++.+ +++.++.|++++. ++.+ .+.+| +++++|.+|+|+|.+ |+++.+. .
T Consensus 214 ~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~---p~~~~l~l~~ 290 (472)
T PRK05976 214 RILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR---PNTEGIGLEN 290 (472)
T ss_pred ccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc---cCCCCCCchh
Confidence 4 11223445555 8999999999973 3332 23456 468999999999999 6655431 1
Q ss_pred hhh---------------hhceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 291 MAL---------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 291 ~~~---------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
... ...+|||+|||... ...++...+.++.+..
T Consensus 291 ~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (472)
T PRK05976 291 TDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK 344 (472)
T ss_pred cCceecCCEEEECCCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 110 12459999999863 2445556666776543
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=240.38 Aligned_cols=307 Identities=16% Similarity=0.185 Sum_probs=191.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC--------CccceeecCCCCCCCCCCCCCCCCcccccccccchhcc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~--------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
++||+|||+||+|+.+|..+++.|.+|.++|+.. .+||+|.+ .||.|.|.+++.........+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n--------~GCiPsK~l~~~a~~~~~~~~~ 73 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN--------VGCIPKKLMHQAALLGQALKDS 73 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc--------cCcCchhHHHHHHHHHHHHhhh
Confidence 5799999999999999999999999999999731 58999988 4999999887765432222111
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHH-----------HHHHhCCcceEEeceEEEEEEEeCCCcEEEE
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----------FAREFGVDQVVRLHTEVLNARLVESNKWKVK 142 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~ 142 (354)
.. +++. ... ..-.++..+.++..+ .++..+++ +.. .+..-++ . +...+.
T Consensus 74 ~~--~g~~---~~~---------~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~--~i~-G~a~f~~--~-~~v~v~ 133 (484)
T TIGR01438 74 RN--YGWN---VEE---------TVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN--YEN-AYAEFVD--K-HRIKAT 133 (484)
T ss_pred hh--cCcc---cCC---------CcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEE-EEEEEcC--C-CEEEEe
Confidence 11 1110 000 000122333333322 23333444 332 2222221 1 333333
Q ss_pred EeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCE
Q 018550 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (354)
Q Consensus 143 ~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~ 222 (354)
..++ ....+.||+||+||| +.|+.|+++|..+. .+.+...... ...+++++|||+|++|+|+|..|++.|.+
T Consensus 134 ~~~g--~~~~~~~d~lVIATG--s~p~~p~ipG~~~~---~~~~~~~~~~-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~ 205 (484)
T TIGR01438 134 NKKG--KEKIYSAERFLIATG--ERPRYPGIPGAKEL---CITSDDLFSL-PYCPGKTLVVGASYVALECAGFLAGIGLD 205 (484)
T ss_pred ccCC--CceEEEeCEEEEecC--CCCCCCCCCCccce---eecHHHhhcc-cccCCCEEEECCCHHHHHHHHHHHHhCCc
Confidence 2232 234799999999999 89999999987542 1222222221 12457899999999999999999999999
Q ss_pred EEEEEecCC---------ccccccCCCCC-CeEEecceeEEecCC-c--EEEccC---cEEecCEEEEcccCCCccCccc
Q 018550 223 VHIASRSVA---------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFRNG---RVVSADVIMHCTGLTGTSTTTL 286 (354)
Q Consensus 223 v~~~~r~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~~g---~~~~~D~vi~a~G~~~~~p~~~ 286 (354)
|+++.+... +...+.|++.+ +++.++.++++...+ . +++.++ +++++|.||+|+|++ ||++
T Consensus 206 Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~---pn~~ 282 (484)
T TIGR01438 206 VTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD---ACTR 282 (484)
T ss_pred EEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC---cCCC
Confidence 999998532 12233445555 889998888887432 2 555555 379999999999999 7776
Q ss_pred ccC--chhh-----------------hhceeeeecccchh-------hHHHHHHHhhhccCCCc-ccccCCCCCccccCC
Q 018550 287 FLK--PMAL-----------------LLWMTIVLGHCTST-------FFRQSWHQAFHLLGYHR-RLSLSPSLNSRASGL 339 (354)
Q Consensus 287 ~l~--~~~~-----------------~~~~i~a~GD~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 339 (354)
++. ..+. ...+|||+|||+.. +..|+...+.++.+... ...+ ..++.
T Consensus 283 ~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~------~~~p~ 356 (484)
T TIGR01438 283 KLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDY------ENVPT 356 (484)
T ss_pred cCCcccccceecCcCCeEecCCCcccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcCCCccccc------ccCCe
Confidence 532 2111 02349999999851 24556666777765332 1222 11333
Q ss_pred chhhhhhhhhhccc
Q 018550 340 PVFCLVELCFLHKT 353 (354)
Q Consensus 340 ~~~~~~~~~~~~~~ 353 (354)
.+++.+|+...+.|
T Consensus 357 ~i~~~p~ia~vGlt 370 (484)
T TIGR01438 357 TVFTPLEYGACGLS 370 (484)
T ss_pred EEeCCCceeeecCC
Confidence 35666666666554
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=238.85 Aligned_cols=257 Identities=18% Similarity=0.206 Sum_probs=168.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC-ccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-VGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++||+||||||||+++|..|++.|.+|+|||+++. +||+|.+. +|.|.+.++.....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~--------gciP~k~~~~~~~~-------------- 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINI--------GCIPTKTLLVAAEK-------------- 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecC--------ccccchHhhhhhhc--------------
Confidence 47999999999999999999999999999999764 69999873 88887765543321
Q ss_pred cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 81 QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
...+... .-.. ..+.....+...+.+++ +..+ +...+ +..++....+. ...++.||
T Consensus 61 -~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~~~~~-----~~~~v~v~~~~-~~~~~~~d 120 (438)
T PRK07251 61 -NLSFEQV----------MATKNTVTSRLRGKNYAMLAGSGVD--LYDA-EAHFV-----SNKVIEVQAGD-EKIELTAE 120 (438)
T ss_pred -CCCHHHH----------HHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEc-----cCCEEEEeeCC-CcEEEEcC
Confidence 0000000 0000 11122223334445665 4442 23222 12234433321 12479999
Q ss_pred EEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----
Q 018550 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----- 231 (354)
Q Consensus 157 ~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----- 231 (354)
+||+||| +.|+.|+++|..... ..+.+...... ...+++++|||+|++|+|+|..+++.|.+|+++.+.+.
T Consensus 121 ~vViATG--s~~~~p~i~G~~~~~-~v~~~~~~~~~-~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~ 196 (438)
T PRK07251 121 TIVINTG--AVSNVLPIPGLADSK-HVYDSTGIQSL-ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE 196 (438)
T ss_pred EEEEeCC--CCCCCCCCCCcCCCC-cEEchHHHhcc-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC
Confidence 9999999 789999999875422 23333222221 23578999999999999999999999999999999763
Q ss_pred cc-----ccccCCCCC-CeEEecceeEEecCC-cE-EEccCcEEecCEEEEcccCCCccCcccccC--chhh--------
Q 018550 232 DE-----THEKQPGYD-NMWLHSMVERANEDG-TV-VFRNGRVVSADVIMHCTGLTGTSTTTLFLK--PMAL-------- 293 (354)
Q Consensus 232 ~~-----~~~~l~~~~-~~~~~~~v~~v~~~~-~v-~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~~~-------- 293 (354)
+. ..+.+++.+ +++.++.++++..++ .+ ...+++++++|.+|+|+|++ |+++.+. ..+.
T Consensus 197 ~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~---p~~~~l~l~~~~~~~~~~g~i 273 (438)
T PRK07251 197 EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRK---PNTEPLGLENTDIELTERGAI 273 (438)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCC---CCcccCCchhcCcEECCCCcE
Confidence 11 122234444 888889999997543 23 33467789999999999999 6555432 1110
Q ss_pred --------hhceeeeecccchh
Q 018550 294 --------LLWMTIVLGHCTST 307 (354)
Q Consensus 294 --------~~~~i~a~GD~~~~ 307 (354)
...+|||+|||+..
T Consensus 274 ~vd~~~~t~~~~IyaiGD~~~~ 295 (438)
T PRK07251 274 KVDDYCQTSVPGVFAVGDVNGG 295 (438)
T ss_pred EECCCcccCCCCEEEeeecCCC
Confidence 02349999999974
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=238.87 Aligned_cols=281 Identities=15% Similarity=0.206 Sum_probs=179.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+|+||||||+|+++|..|++.|.+|+|||++ .+||+|.+. +|.|.|.++.............. +++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~--------gciPsk~l~~~a~~~~~~~~~~~--~g~~-- 68 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNE--------GCMPTKSLLESAEVHDKVKKANH--FGIT-- 68 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCC--------ccccchHHHHHHHHHHHHHHHHh--cCcc--
Confidence 8999999999999999999999999999986 689999984 99999888765433222221111 1110
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHHHHHHH-----------HHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNF-----------AREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
... .....++..+..+..+. +++.+++ +.. .++..++ + +...+...++. .+
T Consensus 69 -~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~a~~~~--~-~~v~v~~~~~~---~~ 130 (458)
T PRK06912 69 -LPN--------GSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIK--VIQ-GKASFET--D-HRVRVEYGDKE---EV 130 (458)
T ss_pred -ccC--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEE-EEEEEcc--C-CEEEEeeCCCc---EE
Confidence 000 00011223443333322 2233444 322 3333332 2 44555543321 47
Q ss_pred EEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-
Q 018550 153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~- 231 (354)
+.||+||+||| +.|+.|++++.... ..+++..... ....+++++|||+|++|+|+|..+.+.|.+|+++.+.+.
T Consensus 131 ~~~d~lviATG--s~p~~~p~~~~~~~--~v~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 131 VDAEQFIIAAG--SEPTELPFAPFDGK--WIINSKHAMS-LPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred EECCEEEEeCC--CCCCCCCCCCCCCC--eEEcchHHhC-ccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 99999999999 78877766664321 2233222221 122468999999999999999999999999999998764
Q ss_pred ---------ccccccCCCCC-CeEEecceeEEecCCc-EEEc-cC--cEEecCEEEEcccCCCccCccccc--Cchhh--
Q 018550 232 ---------DETHEKQPGYD-NMWLHSMVERANEDGT-VVFR-NG--RVVSADVIMHCTGLTGTSTTTLFL--KPMAL-- 293 (354)
Q Consensus 232 ---------~~~~~~l~~~~-~~~~~~~v~~v~~~~~-v~~~-~g--~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~-- 293 (354)
+...+.+++.+ +++.++.|++++.++. +.+. ++ .++++|.|++|+|++ |+++++ ...+.
T Consensus 206 l~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~---p~~~~l~l~~~gv~~ 282 (458)
T PRK06912 206 LPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRK---PRVQQLNLEKAGVQF 282 (458)
T ss_pred CccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCc---cCCCCCCchhcCcee
Confidence 11223344455 8899999999975543 4443 34 368999999999999 666543 11111
Q ss_pred -------------hhceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 294 -------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 294 -------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
...+|||+|||+.. ...++...+.++.+..
T Consensus 283 ~~~gi~Vd~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~~ 331 (458)
T PRK06912 283 SNKGISVNEHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGED 331 (458)
T ss_pred cCCCEEeCCCeecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 12459999999962 3455666677776543
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=240.16 Aligned_cols=309 Identities=17% Similarity=0.192 Sum_probs=192.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEee------CCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchhccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLP 74 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 74 (354)
.+||+||||||+|+++|..+++.|.+|+|+|+ ...+||+|.+ .+|.|.+.++.... +..+.....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n--------~gc~P~k~l~~~a~~~~~~~~~~~ 75 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN--------VGCIPSKALLASSEEFENAGHHFA 75 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc--------ccccHHHHHHHHHHHHHHHHhhHH
Confidence 47999999999999999999999999999998 3578999987 48888766554432 222221111
Q ss_pred cccccccCCCCCccCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEE
Q 018550 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS 143 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~ 143 (354)
.........+ .++..+.+ ...+..+..+++ +.. .++..++..+ +.++|.+
T Consensus 76 ~~G~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~~~~~-~~~~v~v 136 (475)
T PRK06327 76 DHGIHVDGVK---------------IDVAKMIARKDKVVKKMTGGIEGLFKKNKIT--VLK-GRGSFVGKTD-AGYEIKV 136 (475)
T ss_pred hcCccCCCCc---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEecCCC-CCCEEEE
Confidence 1111000000 01122222 233334445666 443 5555665444 5677776
Q ss_pred eecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEE
Q 018550 144 RKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEV 223 (354)
Q Consensus 144 ~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v 223 (354)
..+.+ .+++||+||+||| +.|+.++..+. .+..+............+++++|||+|++|+|+|..|++.|.+|
T Consensus 137 ~~~~~--~~~~~d~lViATG--s~p~~~p~~~~---~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~V 209 (475)
T PRK06327 137 TGEDE--TVITAKHVIIATG--SEPRHLPGVPF---DNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEV 209 (475)
T ss_pred ecCCC--eEEEeCEEEEeCC--CCCCCCCCCCC---CCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 53221 3799999999999 77764432221 11222222211111235789999999999999999999999999
Q ss_pred EEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCc---EEEcc--C--cEEecCEEEEcccCCCccCcc
Q 018550 224 HIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRN--G--RVVSADVIMHCTGLTGTSTTT 285 (354)
Q Consensus 224 ~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~--g--~~~~~D~vi~a~G~~~~~p~~ 285 (354)
+++.+.+. ....+.+++.+ +++.++.|++++.++. +.+.+ | +++++|.|++|+|++ |++
T Consensus 210 tli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~---p~~ 286 (475)
T PRK06327 210 TILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRV---PNT 286 (475)
T ss_pred EEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCc---cCC
Confidence 99998764 11233444555 8899999999985432 44444 3 478999999999999 666
Q ss_pred cccC--chhh----------------hhceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCch
Q 018550 286 LFLK--PMAL----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPV 341 (354)
Q Consensus 286 ~~l~--~~~~----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (354)
+++. ..+. ...+|||+|||+.. ...|+...+.++.+......+ ..++-.+
T Consensus 287 ~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~------~~~p~~~ 360 (475)
T PRK06327 287 DGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDY------NTIPWVI 360 (475)
T ss_pred CCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCCCCCCC------CCCCeEE
Confidence 5321 1111 12459999999863 345666777777665433333 1233335
Q ss_pred hhhhhhhhhccc
Q 018550 342 FCLVELCFLHKT 353 (354)
Q Consensus 342 ~~~~~~~~~~~~ 353 (354)
++.+|+...+.|
T Consensus 361 ~~~pe~a~vGlt 372 (475)
T PRK06327 361 YTSPEIAWVGKT 372 (475)
T ss_pred eCCcceEEEeCC
Confidence 666776665544
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=237.48 Aligned_cols=281 Identities=17% Similarity=0.209 Sum_probs=180.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (354)
++||+|||||++|+++|..|++.|.+|+|||+ +.+||+|.+ .+|.|.+.++... .+..+.. ... +++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~--------~gc~Psk~l~~~~~~~~~~~~-~~~--~g~ 68 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN--------VGCIPTKALLHSAEVYDEIKH-AKD--YGI 68 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee--------cCccchHHHHHHhhHHHHHHH-HHh--cCC
Confidence 47999999999999999999999999999999 789999987 4889887666543 2332221 111 011
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYL-----------QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.... ...++..+.++. ....++.+++ +.. .++..++ . +.+.+...++.
T Consensus 69 ---~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~~--~-~~~~v~~~~g~-- 127 (461)
T TIGR01350 69 ---EVEN----------VSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVT--VIK-GEAKFLD--P-GTVLVTGENGE-- 127 (461)
T ss_pred ---CCCC----------CcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEcc--C-CEEEEecCCCc--
Confidence 0000 001113333222 2333444665 444 3333332 2 44555544332
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCC-CCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVP-GIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
.++.||+||+||| +.|+.|+++ +... ....+...... ....+++++|||+|.+|+|+|..|++.|.+|+++.+
T Consensus 128 -~~~~~d~lVlAtG--~~p~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~ 201 (461)
T TIGR01350 128 -ETLTAKNIIIATG--SRPRSLPGPFDFDG--EVVITSTGALN-LKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEM 201 (461)
T ss_pred -EEEEeCEEEEcCC--CCCCCCCCCCCCCC--ceEEcchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 4799999999999 788877765 3221 11222222211 122568999999999999999999999999999998
Q ss_pred cCC----------ccccccCCCCC-CeEEecceeEEecCC-cE--EEccC--cEEecCEEEEcccCCCccCccc--ccCc
Q 018550 229 SVA----------DETHEKQPGYD-NMWLHSMVERANEDG-TV--VFRNG--RVVSADVIMHCTGLTGTSTTTL--FLKP 290 (354)
Q Consensus 229 ~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~v--~~~~g--~~~~~D~vi~a~G~~~~~p~~~--~l~~ 290 (354)
.+. ....+.+++.+ +++.++.|++++.++ .+ .+.+| +++++|.+++|+|+. |+++ +++.
T Consensus 202 ~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~---p~~~~l~~~~ 278 (461)
T TIGR01350 202 LDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK---PNTEGLGLEN 278 (461)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc---ccCCCCCcHh
Confidence 764 11222334444 889999999887443 33 34456 479999999999999 6665 2332
Q ss_pred hhh----------------hhceeeeecccchh------hHHHHHHHhhhccCCCc
Q 018550 291 MAL----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 291 ~~~----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~ 324 (354)
.+. ...+|||+|||+.. ...++...+.++.+...
T Consensus 279 ~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (461)
T TIGR01350 279 LGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEP 334 (461)
T ss_pred hCceECCCCcEeeCCCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCC
Confidence 211 12459999999863 34666777777766544
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=237.53 Aligned_cols=276 Identities=18% Similarity=0.189 Sum_probs=177.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+||||||+|+++|..|++.|.+|+|||+ +.+||+|.+. +|.|.+.+++....-....+.+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~--------gc~psk~l~~~~~~~~~~~~~~------- 66 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNV--------GCIPSKALIAAAEAFHEAKHAE------- 66 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceecc--------ceeeHHHHHHHHHHHHHHHHHH-------
Confidence 57999999999999999999999999999999 6899999874 8998877665443222211111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh------------CCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF------------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.+.+.. .....++.++.++.++....+ +++ +.. .++..+ +.+.+.+ ++
T Consensus 67 ~~gi~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~-----~~~~v~v-~~--- 126 (460)
T PRK06292 67 EFGIHA--------DGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKID--KIK-GTARFV-----DPNTVEV-NG--- 126 (460)
T ss_pred hcCCCc--------CCCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCE--EEE-EEEEEc-----cCCEEEE-Cc---
Confidence 111100 001234466666666555433 222 211 222222 2233444 22
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcc-eeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK-QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
.++.||+||+||| +. .|.++|.....+. .+++..... ....+++++|||+|++|+|+|..|++.|.+|+++.+
T Consensus 127 -~~~~~d~lIiATG--s~--~p~ipg~~~~~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~ 200 (460)
T PRK06292 127 -ERIEAKNIVIATG--SR--VPPIPGVWLILGDRLLTSDDAFE-LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFER 200 (460)
T ss_pred -EEEEeCEEEEeCC--CC--CCCCCCCcccCCCcEECchHHhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEec
Confidence 3799999999999 55 4455555321112 222222211 123578999999999999999999999999999998
Q ss_pred cCC----------ccccccCCCCCCeEEecceeEEecCC--cEEE--ccC--cEEecCEEEEcccCCCccCccccc--Cc
Q 018550 229 SVA----------DETHEKQPGYDNMWLHSMVERANEDG--TVVF--RNG--RVVSADVIMHCTGLTGTSTTTLFL--KP 290 (354)
Q Consensus 229 ~~~----------~~~~~~l~~~~~~~~~~~v~~v~~~~--~v~~--~~g--~~~~~D~vi~a~G~~~~~p~~~~l--~~ 290 (354)
.+. ....+.+++..++++++.+++++.++ .+++ .++ +++++|.|++|+|++ ||++++ +.
T Consensus 201 ~~~~l~~~d~~~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~---p~~~~l~l~~ 277 (460)
T PRK06292 201 GDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRR---PNTDGLGLEN 277 (460)
T ss_pred CCCcCcchhHHHHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCc---cCCCCCCcHh
Confidence 764 11222333336788899999997543 2443 233 579999999999999 666642 22
Q ss_pred hhhh----------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 291 MALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 291 ~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
.+.. ..+|||+|||+.. ...|+...+.++.+.
T Consensus 278 ~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 278 TGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred hCCEecCCCcEeECCCcccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 1111 2449999999863 356677777887664
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=210.80 Aligned_cols=308 Identities=17% Similarity=0.221 Sum_probs=205.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+|.+|||||..|+++|+.++++|.++.|+|..-.+||+|.+ .||.|.+.++....|.....+...
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn--------~GCVPKKvm~~~a~~~~~~~da~~------ 85 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN--------VGCVPKKVMWYAADYSEEMEDAKD------ 85 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe--------eccccceeEEehhhhhHHhhhhhh------
Confidence 378999999999999999999999999999986689999998 599999999998888776655543
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEE----EeCCCcEEEEEeecCCceEEEEeC
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~----~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
+.|+... ..-.+|..+.+...+++.++ ++-.+...+..|.-|+ ..+++...|...++. ...|.++
T Consensus 86 -yG~~~~~-------~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~--~~~Ytak 155 (478)
T KOG0405|consen 86 -YGFPINE-------EGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGT--KIVYTAK 155 (478)
T ss_pred -cCCcccc-------ccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCe--eEEEecc
Confidence 2222210 11112344444444444332 1111011112222121 111245566666654 3569999
Q ss_pred EEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----
Q 018550 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----- 231 (354)
Q Consensus 157 ~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----- 231 (354)
++++|+| ++|.+|++||.+. .+.+..+.+.++ .|++++|||+|++|+|+|..++.+|.+++++.|.+.
T Consensus 156 ~iLIAtG--g~p~~PnIpG~E~----gidSDgff~Lee-~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~F 228 (478)
T KOG0405|consen 156 HILIATG--GRPIIPNIPGAEL----GIDSDGFFDLEE-QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGF 228 (478)
T ss_pred eEEEEeC--CccCCCCCCchhh----ccccccccchhh-cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcch
Confidence 9999999 9999999999775 345555555433 679999999999999999999999999999999774
Q ss_pred -----ccccccCCCCC-CeEEecceeEEecCCc----EEEccCcEEecCEEEEcccCCCccCcccccC--chhhh-----
Q 018550 232 -----DETHEKQPGYD-NMWLHSMVERANEDGT----VVFRNGRVVSADVIMHCTGLTGTSTTTLFLK--PMALL----- 294 (354)
Q Consensus 232 -----~~~~~~l~~~~-~~~~~~~v~~v~~~~~----v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~~~~----- 294 (354)
+...+.++..+ ++|.++.++++.+... +..+.|....+|.++||+|+. ||+.-|. ..+..
T Consensus 229 D~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~---Pntk~L~le~vGVk~~~~g 305 (478)
T KOG0405|consen 229 DEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRK---PNTKGLNLENVGVKTDKNG 305 (478)
T ss_pred hHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCC---CCcccccchhcceeeCCCC
Confidence 23344556666 9999999999875432 455566555699999999999 7766542 22221
Q ss_pred -----------hceeeeecccchhh--HHHHH----HHhhhccCC--CcccccCCCCCccc-cCCchhhh
Q 018550 295 -----------LWMTIVLGHCTSTF--FRQSW----HQAFHLLGY--HRRLSLSPSLNSRA-SGLPVFCL 344 (354)
Q Consensus 295 -----------~~~i~a~GD~~~~~--~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~ 344 (354)
...||++||++.+. ++-+. ..+-.+.+. +.++.| ...++.+ +++|++++
T Consensus 306 ~IivDeYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~~~~~~kldY-~nVp~vVFshP~igtV 374 (478)
T KOG0405|consen 306 AIIVDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDY-ENVPCVVFSHPPIGTV 374 (478)
T ss_pred CEEEeccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhcCCCCCcccc-ccCceEEEecCCcccc
Confidence 12399999999853 22222 223334332 225555 3344444 55556665
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=238.38 Aligned_cols=259 Identities=20% Similarity=0.255 Sum_probs=186.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||||+++|..|+++|++|+|||++ .+||.+....... .++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~i~------------------------------~~p 52 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSEVV------------------------------NYP 52 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccccc------------------------------cCC
Confidence 479999999999999999999999999999995 7888876521100 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+. ......+.+++++.+.+++++ + .+++|+.++.++ +.+.+.+.++ .+.+++||+|
T Consensus 53 g~~--------------~~~~~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~-~~~~V~~~~g-----~~~a~~lVlA 109 (555)
T TIGR03143 53 GIL--------------NTTGPELMQEMRQQAQDFGVK--F-LQAEVLDVDFDG-DIKTIKTARG-----DYKTLAVLIA 109 (555)
T ss_pred CCc--------------CCCHHHHHHHHHHHHHHcCCE--E-eccEEEEEEecC-CEEEEEecCC-----EEEEeEEEEC
Confidence 111 112367888898888888888 5 468899988755 5567776543 6889999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----cccccc
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK 237 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~~ 237 (354)
|| +.++.|+++|.+.+.+..++.+..++.....+++++|||+|++|+|+|..|++.|++|+++.+.+. .....+
T Consensus 110 TG--a~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~ 187 (555)
T TIGR03143 110 TG--ASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEK 187 (555)
T ss_pred CC--CccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHH
Confidence 99 788889999976555555555444444556789999999999999999999999999999999774 111222
Q ss_pred C-CC-CCCeEEecceeEEecCCcE---EE---ccCcE----EecCE----EEEcccCCCccCcccccCchhh--------
Q 018550 238 Q-PG-YDNMWLHSMVERANEDGTV---VF---RNGRV----VSADV----IMHCTGLTGTSTTTLFLKPMAL-------- 293 (354)
Q Consensus 238 l-~~-~~~~~~~~~v~~v~~~~~v---~~---~~g~~----~~~D~----vi~a~G~~~~~p~~~~l~~~~~-------- 293 (354)
+ .. ..++++++.|+++.+++.+ .+ .+|+. +++|. |++|+|++ |++++++....
T Consensus 188 ~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~---Pn~~l~~~~l~l~~~G~I~ 264 (555)
T TIGR03143 188 VKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYA---PSSELFKGVVELDKRGYIP 264 (555)
T ss_pred HHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCC---CChhHHhhhcccCCCCeEE
Confidence 2 22 3488999999999866532 22 34543 23676 99999999 88877653211
Q ss_pred -------hhceeeeecccchh-------hHHHHHHHhhhc
Q 018550 294 -------LLWMTIVLGHCTST-------FFRQSWHQAFHL 319 (354)
Q Consensus 294 -------~~~~i~a~GD~~~~-------~~~~~~~~~~~~ 319 (354)
...+|||+|||+.. +..++..+|.++
T Consensus 265 vd~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i 304 (555)
T TIGR03143 265 TNEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSA 304 (555)
T ss_pred eCCccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHH
Confidence 12459999999752 244555555444
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=234.36 Aligned_cols=275 Identities=17% Similarity=0.184 Sum_probs=177.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+|||+||+|..+|. +.+|.+|.|+|+ +.+||+|.+ +||+|.|.++..........+.... ++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~-~~~GGtC~n--------~GCiPsK~l~~~a~~~~~~~~~~~~--g~~ 68 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEK-GTFGGTCLN--------VGCIPTKMFVYAAEVAQSIGESARL--GID 68 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeC-CCCCCeeec--------cCccchHHHHHHHHHHHHHHHhhcc--Cee
Confidence 589999999999999864 447999999998 479999998 4999999888765443333222211 110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHH-HHHH--------------hCCcceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQN-FARE--------------FGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~--------------~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
. . ..-.++..+.++... ..+. .+++ +..+..+.. +.++|.+.++
T Consensus 69 ~-~------------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~~------~~~~V~~~~g 127 (452)
T TIGR03452 69 A-E------------IDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNID--VYDGHARFV------GPRTLRTGDG 127 (452)
T ss_pred C-C------------CCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeE--EEEEEEEEe------cCCEEEECCC
Confidence 0 0 000122444444332 1111 2333 333222111 4456666554
Q ss_pred CCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEE
Q 018550 147 DDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226 (354)
Q Consensus 147 ~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~ 226 (354)
. ++.||+||+||| +.|..|+..+... .....+....... ..+++++|||+|++|+|+|..|++.|.+|+++
T Consensus 128 ~----~~~~d~lIiATG--s~p~~p~~~~~~~--~~~~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli 198 (452)
T TIGR03452 128 E----EITGDQIVIAAG--SRPYIPPAIADSG--VRYHTNEDIMRLP-ELPESLVIVGGGYIAAEFAHVFSALGTRVTIV 198 (452)
T ss_pred c----EEEeCEEEEEEC--CCCCCCCCCCCCC--CEEEcHHHHHhhh-hcCCcEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 3 789999999999 8888776433211 1122222221111 24689999999999999999999999999999
Q ss_pred EecCC-----ccc----cccC-CCCCCeEEecceeEEecCC-c--EEEccCcEEecCEEEEcccCCCccCcccccC--ch
Q 018550 227 SRSVA-----DET----HEKQ-PGYDNMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGLTGTSTTTLFLK--PM 291 (354)
Q Consensus 227 ~r~~~-----~~~----~~~l-~~~~~~~~~~~v~~v~~~~-~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~ 291 (354)
.+.+. +.. +.++ ....+++.++.|++++.++ . +.+.+|+++++|.|++|+|++ ||++++. ..
T Consensus 199 ~~~~~ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~---pn~~~l~~~~~ 275 (452)
T TIGR03452 199 NRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRV---PNGDLLDAEAA 275 (452)
T ss_pred EccCccccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccC---cCCCCcCchhc
Confidence 98764 111 1112 2234788889999997543 2 555678889999999999999 7777642 11
Q ss_pred hhh----------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 292 ALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 292 ~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
+.. ..+|||+|||+.. ...|+...+.++.+.
T Consensus 276 gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 276 GVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred CeeECCCCcEeeCCCcccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 111 2349999999974 355666677777654
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-30 Score=230.49 Aligned_cols=279 Identities=19% Similarity=0.284 Sum_probs=189.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
|+++|||||||+||+.+|..|++.+ .+|+||++++.. .++ .. ..+.
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~----~y~-----------------------~~--~l~~--- 48 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----EYN-----------------------KP--DLSH--- 48 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC----CcC-----------------------cC--cCcH---
Confidence 6789999999999999999998864 589999987532 010 00 0000
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHH-HHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLR-YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
.+.. . ....++.. ...+++++++++ ++.+++|++++..+ ..+++. + ..+.||+
T Consensus 49 ~~~~--~--------------~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~---~~v~~~-~----~~~~yd~ 102 (377)
T PRK04965 49 VFSQ--G--------------QRADDLTRQSAGEFAEQFNLR--LFPHTWVTDIDAEA---QVVKSQ-G----NQWQYDK 102 (377)
T ss_pred HHhC--C--------------CCHHHhhcCCHHHHHHhCCCE--EECCCEEEEEECCC---CEEEEC-C----eEEeCCE
Confidence 0000 0 00134443 245666778888 88899999998743 355543 3 2799999
Q ss_pred EEEeeCCCCCcccCCCCCCCCCCcceeecccCC-----CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~- 231 (354)
||+||| +.++.|+++|.+. .+...... ......+++++|||+|++|+|+|..|++.+.+|+++++.+.
T Consensus 103 LVlATG--~~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 103 LVLATG--ASAFVPPIPGREL----MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred EEECCC--CCCCCCCCCCCce----EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 999999 7888898988653 22211111 11122568999999999999999999999999999998763
Q ss_pred ----------ccccccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCCccCcccccCchhhh---
Q 018550 232 ----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL--- 294 (354)
Q Consensus 232 ----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~--- 294 (354)
....+.+++.+ +++.++.|+++..++. +.+.+|+++++|.||+|+|.. |++++++..+..
T Consensus 177 l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~---p~~~l~~~~gl~~~~ 253 (377)
T PRK04965 177 LASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR---PNTALARRAGLAVNR 253 (377)
T ss_pred cchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC---cchHHHHHCCCCcCC
Confidence 11223344455 7888999999986542 667888999999999999999 776665443221
Q ss_pred -----------hceeeeecccchh----------hHHHHHHHhhhccCCCcccccCCCC-CccccCCchhhhhh
Q 018550 295 -----------LWMTIVLGHCTST----------FFRQSWHQAFHLLGYHRRLSLSPSL-NSRASGLPVFCLVE 346 (354)
Q Consensus 295 -----------~~~i~a~GD~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 346 (354)
..+|||+|||+.. ...|+...|.++.|....+...+.. ...++++|+.+..+
T Consensus 254 gi~vd~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 327 (377)
T PRK04965 254 GIVVDSYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGE 327 (377)
T ss_pred CEEECCCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCC
Confidence 3459999999852 3456677788888876554432221 12236666655544
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=237.53 Aligned_cols=310 Identities=18% Similarity=0.233 Sum_probs=187.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (354)
++||+||||||+|+++|..|+++|.+|+|||++ .+||+|.+. +|.|.+.++.... +..+...... +++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~--------gciPsk~l~~~~~~~~~~~~~~~~--~gi 72 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV--------GCIPSKALLRNAELAHIFTKEAKT--FGI 72 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC--------CccccHHHHhhHHHHHHHHHHHHh--cCC
Confidence 379999999999999999999999999999984 799999884 8999887665432 2222211111 011
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh--CCcceEEe-ceEEEEEEE----eCCCcEEEEEeecCCceEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF--GVDQVVRL-HTEVLNARL----VESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~v~~-~~~v~~i~~----~~~~~~~v~~~~g~~~~~~~ 153 (354)
.. ....++..+..+.++..++. ++. ..+ ...|+.+.. .+...+.+...++. ..++
T Consensus 73 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~--~~~~ 134 (466)
T PRK07818 73 SG--------------EVTFDYGAAFDRSRKVAEGRVKGVH--FLMKKNKITEIHGYGTFTDANTLEVDLNDGG--TETV 134 (466)
T ss_pred Cc--------------CcccCHHHHHHHHHHHHHHHHHHHH--HHHHhCCCEEEEEEEEEcCCCEEEEEecCCC--eeEE
Confidence 00 00112233333333332211 111 000 011222221 11134445443332 3479
Q ss_pred EeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--
Q 018550 154 TFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-- 231 (354)
.||+||+||| +.|+.| ||.+. ....+.+..... ....+++++|||+|++|+|+|..|++.|.+|+++.+.+.
T Consensus 135 ~~d~lViATG--s~p~~~--pg~~~-~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l 208 (466)
T PRK07818 135 TFDNAIIATG--SSTRLL--PGTSL-SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL 208 (466)
T ss_pred EcCEEEEeCC--CCCCCC--CCCCC-CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 9999999999 777654 44321 122333322111 123568999999999999999999999999999998763
Q ss_pred --------ccccccCCCCC-CeEEecceeEEecCCc---EEEc--cC--cEEecCEEEEcccCCCccCccccc--Cchhh
Q 018550 232 --------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFR--NG--RVVSADVIMHCTGLTGTSTTTLFL--KPMAL 293 (354)
Q Consensus 232 --------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~--~g--~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~ 293 (354)
....+.+++.+ +++.++.|+++..++. +++. +| +++++|.||+|+|++ ||++++ ...+.
T Consensus 209 ~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~---pn~~~l~l~~~g~ 285 (466)
T PRK07818 209 PNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFA---PRVEGYGLEKTGV 285 (466)
T ss_pred CccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcc---cCCCCCCchhcCc
Confidence 12233344555 8999999999985542 3443 56 479999999999999 666642 22211
Q ss_pred h----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhhhc
Q 018550 294 L----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFLH 351 (354)
Q Consensus 294 ~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (354)
. ..+|||+|||+.. ...|+...+.++.+..... + -....++.-+++.+|+.+.+
T Consensus 286 ~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~-~---~~~~~~p~~~~~~p~~a~vG 361 (466)
T PRK07818 286 ALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLE-L---GDYRMMPRATFCQPQVASFG 361 (466)
T ss_pred EECCCCcEeeCCCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCCCCCc-c---CccCCCCeEEECCCCeEEEe
Confidence 1 2349999999863 4566777788886543210 0 01122233355556665555
Q ss_pred cc
Q 018550 352 KT 353 (354)
Q Consensus 352 ~~ 353 (354)
.|
T Consensus 362 lt 363 (466)
T PRK07818 362 LT 363 (466)
T ss_pred CC
Confidence 44
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=235.72 Aligned_cols=242 Identities=16% Similarity=0.248 Sum_probs=164.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|||||||++|+.+|..|+++ +.+|+|||+++.++ +.. .
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~-~---------------------------------- 43 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FAN-C---------------------------------- 43 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--ccc-C----------------------------------
Confidence 35899999999999999999987 57999999986543 110 0
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHH-HHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYL-QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDA 157 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~ 157 (354)
.+++... .....+.++..+. .++.++.+++ ++.+++|++|+.++ +. |.+.++. +...++.||+
T Consensus 44 --~lp~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~--v~~~~~V~~Id~~~-~~--v~~~~~~~~~~~~~~yd~ 108 (438)
T PRK13512 44 --ALPYYIG--------EVVEDRKYALAYTPEKFYDRKQIT--VKTYHEVIAINDER-QT--VTVLNRKTNEQFEESYDK 108 (438)
T ss_pred --Ccchhhc--------CccCCHHHcccCCHHHHHHhCCCE--EEeCCEEEEEECCC-CE--EEEEECCCCcEEeeecCE
Confidence 0000000 0000112222222 3344566888 88889999998765 44 4444332 2234679999
Q ss_pred EEEeeCCCCCcccCCCCCCCCCCcceeecccCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
||+||| +.|+.|.+++... +......+. ....+++++|||+|.+|+|+|..|++.|.+|+++++.+
T Consensus 109 lviAtG--s~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 109 LILSPG--ASANSLGFESDIT-----FTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred EEECCC--CCCCCCCCCCCCe-----EEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 999999 8888777543221 111111000 11246899999999999999999999999999999876
Q ss_pred C----------ccccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCchhhh-----
Q 018550 231 A----------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL----- 294 (354)
Q Consensus 231 ~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~----- 294 (354)
. ....+.+++.+ +++.++.|+++++.. +++++|+++++|.|++|+|++ ||+++++..+..
T Consensus 182 ~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-v~~~~g~~~~~D~vl~a~G~~---pn~~~l~~~gl~~~~~G 257 (438)
T PRK13512 182 KINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNE-VTFKSGKVEHYDMIIEGVGTH---PNSKFIESSNIKLDDKG 257 (438)
T ss_pred ccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCE-EEECCCCEEEeCEEEECcCCC---cChHHHHhcCcccCCCC
Confidence 4 12233445555 889999999997654 888888899999999999999 777766544321
Q ss_pred -----------hceeeeecccch
Q 018550 295 -----------LWMTIVLGHCTS 306 (354)
Q Consensus 295 -----------~~~i~a~GD~~~ 306 (354)
..+|||+|||+.
T Consensus 258 ~i~Vd~~~~t~~~~IyA~GD~~~ 280 (438)
T PRK13512 258 FIPVNDKFETNVPNIYAIGDIIT 280 (438)
T ss_pred cEEECCCcccCCCCEEEeeeeEE
Confidence 134999999985
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=230.48 Aligned_cols=279 Identities=13% Similarity=0.142 Sum_probs=186.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+|||||+||+.+|..|++++. +|+|+++++.+. +... . +...+...
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~--y~r~-~------------------l~~~~~~~------- 54 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP--YERP-P------------------LSKSMLLE------- 54 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC--CCCC-C------------------CCHHHHCC-------
Confidence 3689999999999999999999886 799999875431 0000 0 00000000
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+... ..+ ....++....+++ ++.++.|..++..+ ..+.+.++. ++.||+||
T Consensus 55 ----~~~~---------~~~-------~~~~~~~~~~~i~--~~~g~~V~~id~~~---~~v~~~~g~----~~~yd~LV 105 (396)
T PRK09754 55 ----DSPQ---------LQQ-------VLPANWWQENNVH--LHSGVTIKTLGRDT---RELVLTNGE----SWHWDQLF 105 (396)
T ss_pred ----CCcc---------ccc-------cCCHHHHHHCCCE--EEcCCEEEEEECCC---CEEEECCCC----EEEcCEEE
Confidence 0000 000 0012233456787 88888999998743 456666654 79999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--- 231 (354)
+||| +.|+.+++++... ...+......+ .....+++++|||+|.+|+|+|..|++.|.+|+++++.+.
T Consensus 106 iATG--s~~~~~p~~~~~~--~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~ 181 (396)
T PRK09754 106 IATG--AAARPLPLLDALG--ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG 181 (396)
T ss_pred EccC--CCCCCCCCCCcCC--CCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh
Confidence 9999 7777666554322 12222111111 1122578999999999999999999999999999998663
Q ss_pred ---c-----cccccCCCCC-CeEEecceeEEecCCc--EEEccCcEEecCEEEEcccCCCccCcccccCchhhh------
Q 018550 232 ---D-----ETHEKQPGYD-NMWLHSMVERANEDGT--VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL------ 294 (354)
Q Consensus 232 ---~-----~~~~~l~~~~-~~~~~~~v~~v~~~~~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------ 294 (354)
+ ...+.+++.+ +++.++.|+++..++. +.+.+|+++++|.|++|+|.. ||++++...+..
T Consensus 182 ~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~---pn~~l~~~~gl~~~~gi~ 258 (396)
T PRK09754 182 RNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGIS---ANDQLAREANLDTANGIV 258 (396)
T ss_pred hhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCC---hhhHHHHhcCCCcCCCEE
Confidence 1 1222334445 8899999999976433 567888999999999999999 777765433321
Q ss_pred --------hceeeeecccch---------------hhHHHHHHHhhhccCCCcccccCCCCCccccCCchhhh
Q 018550 295 --------LWMTIVLGHCTS---------------TFFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCL 344 (354)
Q Consensus 295 --------~~~i~a~GD~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (354)
..+|||+|||+. ....|+...|.++.+....+...|.+++..+++++...
T Consensus 259 vd~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~p~~~~~~~~~~~~~~ 331 (396)
T PRK09754 259 IDEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFI 331 (396)
T ss_pred ECCCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEeCCccEEEe
Confidence 244999999984 23557777888998877666666677777677654443
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=237.35 Aligned_cols=332 Identities=15% Similarity=0.172 Sum_probs=196.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC-CCccceeecCCCCCCCCCCCCCCCCcccccccccchhccc-ccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP-RELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (354)
.+||+|||+|++|..+|..++++|.+|+|||++ +.+||+|.+ .||+|.+.++..........+.. ...++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn--------~GCiPsK~l~~~a~~~~~~~~~~~~~~~G 187 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN--------VGCIPSKALLYATGKYRELKNLAKLYTYG 187 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE--------eCCcchHHHHHHHHHHHHHHhccccccCC
Confidence 469999999999999999999999999999974 369999998 49999998887654332222221 01112
Q ss_pred cc--CCCCCccCCCC-CCC--CCCCCCHHHHHHHHHHHHHHhC--Ccc-----eEEeceEEEEEEEeCC---CcEEEEEe
Q 018550 80 FQ--AYPFVARNYEG-SVD--LRRYPGHEEVLRYLQNFAREFG--VDQ-----VVRLHTEVLNARLVES---NKWKVKSR 144 (354)
Q Consensus 80 ~~--~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~--~~~-----~v~~~~~v~~i~~~~~---~~~~v~~~ 144 (354)
+. .|+.......+ ... ...-.++..+.++.+...+++. +.. .+....+.+++..... +..++...
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~ 267 (659)
T PTZ00153 188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE 267 (659)
T ss_pred eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence 11 01100000000 000 0111345666666655554431 110 0111122233332110 12233332
Q ss_pred -ecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEE
Q 018550 145 -KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEV 223 (354)
Q Consensus 145 -~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v 223 (354)
++ .++.||+||+||| +.|+.|+..+... ..++++...... ...+++++|||+|++|+|+|..|++.|++|
T Consensus 268 ~~g----~~i~ad~lIIATG--S~P~~P~~~~~~~--~~V~ts~d~~~l-~~lpk~VvIVGgG~iGvE~A~~l~~~G~eV 338 (659)
T PTZ00153 268 KSG----KEFKVKNIIIATG--STPNIPDNIEVDQ--KSVFTSDTAVKL-EGLQNYMGIVGMGIIGLEFMDIYTALGSEV 338 (659)
T ss_pred cCC----EEEECCEEEEcCC--CCCCCCCCCCCCC--CcEEehHHhhhh-hhcCCceEEECCCHHHHHHHHHHHhCCCeE
Confidence 22 3789999999999 8888887555432 123333222221 124689999999999999999999999999
Q ss_pred EEEEecCC-----cc-----ccccC-CCCC-CeEEecceeEEecCC--c-EE--Ecc-------C--------cEEecCE
Q 018550 224 HIASRSVA-----DE-----THEKQ-PGYD-NMWLHSMVERANEDG--T-VV--FRN-------G--------RVVSADV 271 (354)
Q Consensus 224 ~~~~r~~~-----~~-----~~~~l-~~~~-~~~~~~~v~~v~~~~--~-v~--~~~-------g--------~~~~~D~ 271 (354)
+++++.+. +. ..+.+ ++.+ +++.++.|++++.++ . +. +.+ + +++++|.
T Consensus 339 TLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~ 418 (659)
T PTZ00153 339 VSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDS 418 (659)
T ss_pred EEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCE
Confidence 99999764 11 12222 3344 889999999997543 1 33 221 1 2799999
Q ss_pred EEEcccCCCccCcccccC--chhh---------h------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 272 IMHCTGLTGTSTTTLFLK--PMAL---------L------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 272 vi~a~G~~~~~p~~~~l~--~~~~---------~------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
||||+|++ ||+++|. ..+. + ..+|||+|||+.. +..|+...+.++.+.
T Consensus 419 VlvAtGr~---Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 419 CLVATGRK---PNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred EEEEECcc---cCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 99999999 7776542 1110 0 1469999999973 345666667777654
Q ss_pred Ccc-ccc------CCCCCccccCCchhhhhhhhhhccc
Q 018550 323 HRR-LSL------SPSLNSRASGLPVFCLVELCFLHKT 353 (354)
Q Consensus 323 ~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (354)
... +.. ...+..+.++--+++.+|+.+.+.|
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlT 533 (659)
T PTZ00153 496 GKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLT 533 (659)
T ss_pred CccccccccccccccccccCcCCEEEECcCceEEeeCC
Confidence 210 000 0011122233335788888877765
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-29 Score=210.85 Aligned_cols=312 Identities=19% Similarity=0.230 Sum_probs=198.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccc-ccccccchh-cccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLRV-NLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ 79 (354)
.+||+|||+||+|..||.++++.|++..++|++..+||+|.+ .||+|.+.++. +.+|..+.. +......+
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn--------vGcIPSKALL~nSh~yh~~q~~~~~~rGi~ 110 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN--------VGCIPSKALLNNSHLYHEAQHEDFASRGID 110 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee--------ccccccHHHhhhhHHHHHHhhhHHHhcCcc
Confidence 479999999999999999999999999999999999999998 59999998766 555655544 33333333
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh--CCcceEEeceEEEEEEEe----CCCcEEEEEeecCCceEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF--GVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~v~~~~~v~~i~~~----~~~~~~v~~~~g~~~~~~~ 153 (354)
.+...++ ...++......++++ +++..+. ..+|+-+.-. +.....+...++ +...+
T Consensus 111 vs~~~~d---------------l~~~~~~k~~~vk~Lt~gi~~lfk-knkV~~~kG~gsf~~p~~V~v~k~dg--~~~ii 172 (506)
T KOG1335|consen 111 VSSVSLD---------------LQAMMKAKDNAVKQLTGGIENLFK-KNKVTYVKGFGSFLDPNKVSVKKIDG--EDQII 172 (506)
T ss_pred ccceecC---------------HHHHHHHHHHHHHHHhhHHHHHhh-hcCeEEEeeeEeecCCceEEEeccCC--CceEE
Confidence 3222221 134444443333332 1111011 1111111110 113344444444 45799
Q ss_pred EeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--
Q 018550 154 TFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-- 231 (354)
+++++|+||| |. .+++||+.--...++.+.-... -..-|++++|||+|.+|+|+..-+.++|.+||+++-.+.
T Consensus 173 ~aKnIiiATG--Se--V~~~PGI~IDekkIVSStgALs-L~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~ 247 (506)
T KOG1335|consen 173 KAKNIIIATG--SE--VTPFPGITIDEKKIVSSTGALS-LKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG 247 (506)
T ss_pred eeeeEEEEeC--Cc--cCCCCCeEecCceEEecCCccc-hhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc
Confidence 9999999999 52 2334565432234444332222 233579999999999999999999999999999998775
Q ss_pred ---ccc-----cccCCCCC-CeEEecceeEEecCC--c--EEEcc---C--cEEecCEEEEcccCCCccCcccccC--ch
Q 018550 232 ---DET-----HEKQPGYD-NMWLHSMVERANEDG--T--VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLK--PM 291 (354)
Q Consensus 232 ---~~~-----~~~l~~~~-~~~~~~~v~~v~~~~--~--v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~--~~ 291 (354)
+.+ .+-|.+.+ .+++++.+..++.++ . |++.+ + ++++||.+++++|++ |.++-|. ..
T Consensus 248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr---P~t~GLgle~i 324 (506)
T KOG1335|consen 248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR---PFTEGLGLEKI 324 (506)
T ss_pred cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc---ccccCCChhhc
Confidence 222 22234444 899999999998544 3 44443 2 578999999999999 8776652 11
Q ss_pred hhhh----------------ceeeeecccchhhHHH------HHHHhhhccCCCcccccCCCCCccccCCchhhhhhhhh
Q 018550 292 ALLL----------------WMTIVLGHCTSTFFRQ------SWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCF 349 (354)
Q Consensus 292 ~~~~----------------~~i~a~GD~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (354)
+... ..||++||+...++.. .....-.+.+-+.- ...+.++--.+|-||+.+
T Consensus 325 Gi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~~h------v~ynciP~v~ythPEvaw 398 (506)
T KOG1335|consen 325 GIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGH------VDYNCIPSVVYTHPEVAW 398 (506)
T ss_pred ccccccccceeccccccccCCceEEecccCCcchhhhhhhhhchhheeeecccCcc------cccCCCCceeecccceee
Confidence 1111 2299999999865433 22222233232222 233443334888899999
Q ss_pred hccc
Q 018550 350 LHKT 353 (354)
Q Consensus 350 ~~~~ 353 (354)
.+||
T Consensus 399 VG~T 402 (506)
T KOG1335|consen 399 VGKT 402 (506)
T ss_pred eccc
Confidence 9988
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=193.94 Aligned_cols=257 Identities=19% Similarity=0.265 Sum_probs=198.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC----CccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE----QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~----~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
-+|+|||+|||+-.+|..+++..++.+|||-.. .+||++.......
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~ve------------------------------ 58 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVE------------------------------ 58 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccc------------------------------
Confidence 379999999999999999999999999999631 2345554432221
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
.|++||... ...++++.+++...++|.+ +.. ..|.+++... ..|.+.+..+ .+.+|.|
T Consensus 59 NfPGFPdgi-------------~G~~l~d~mrkqs~r~Gt~--i~t-EtVskv~~ss-kpF~l~td~~-----~v~~~av 116 (322)
T KOG0404|consen 59 NFPGFPDGI-------------TGPELMDKMRKQSERFGTE--IIT-ETVSKVDLSS-KPFKLWTDAR-----PVTADAV 116 (322)
T ss_pred cCCCCCccc-------------ccHHHHHHHHHHHHhhcce--eee-eehhhccccC-CCeEEEecCC-----ceeeeeE
Confidence 122333221 1278999999999999998 554 7788998877 8899888664 7899999
Q ss_pred EEeeCCCCCcccCCCCCC--CCCCcceeecccCCCCCC--CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc--
Q 018550 159 VVCNGHFSVPRLAQVPGI--DSWPGKQMHSHNYRIPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-- 232 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~--~~~~~~~~~~~~~~~~~~--~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-- 232 (354)
|+||| +..+...+||. .+|..+.+..|..++... ++.|..+|||||.+|+|-|..|.+-+++|.+++|++.-
T Consensus 117 I~atG--AsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA 194 (322)
T KOG0404|consen 117 ILATG--ASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA 194 (322)
T ss_pred EEecc--cceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH
Confidence 99999 56666667765 347788888888888754 79999999999999999999999999999999999872
Q ss_pred --cccccCCCCC--CeEEecceeEEecCCc----EEEcc---C--cEEecCEEEEcccCCCccCcccccCchhhhh----
Q 018550 233 --ETHEKQPGYD--NMWLHSMVERANEDGT----VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMALLL---- 295 (354)
Q Consensus 233 --~~~~~l~~~~--~~~~~~~v~~v~~~~~----v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~~---- 295 (354)
...++.++.. +++.++.+.+..+++. +.+.+ | +.++.+-+++++|-. |++.|+++....+
T Consensus 195 s~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~---Pat~~l~gqve~d~~GY 271 (322)
T KOG0404|consen 195 SKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHS---PATKFLKGQVELDEDGY 271 (322)
T ss_pred HHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCC---chhhHhcCceeeccCce
Confidence 2233344444 6788888887777653 44432 3 678999999999999 9999998744432
Q ss_pred ------------ceeeeecccchhhHHHHHHHh
Q 018550 296 ------------WMTIVLGHCTSTFFRQSWHQA 316 (354)
Q Consensus 296 ------------~~i~a~GD~~~~~~~~~~~~~ 316 (354)
.++||+||+....|+|+..+|
T Consensus 272 i~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaA 304 (322)
T KOG0404|consen 272 IVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAA 304 (322)
T ss_pred EEeccCcccccccceeeccccchHHHHHHHhhh
Confidence 239999999999999988665
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=208.02 Aligned_cols=195 Identities=33% Similarity=0.565 Sum_probs=134.7
Q ss_pred EEEcCChHHHHHHHHHHHcCCc-EEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC-
Q 018550 6 AVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY- 83 (354)
Q Consensus 6 vIIG~G~aG~~~a~~l~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (354)
+||||||+|+++|..|.++|.+ +++||+++.+||.|...+..... ..|. .+. ..+.++++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~---~~~~-------~~~--------~~~~~~~~~ 62 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRL---HSPS-------FFS--------SDFGLPDFE 62 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT----BSSS-------CCT--------GGSS--CCC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCcc---ccCc-------ccc--------ccccCCccc
Confidence 6999999999999999999998 99999999999999863221100 0000 000 00000000
Q ss_pred --CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 84 --PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 84 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
...... .......+++..++.+|+++++++++++ ++++++|+++.+++ +.|+|++.++. ++.+|.||+|
T Consensus 63 ~~~~~~~~--~~~~~~~~~~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~-~~w~v~~~~~~----~~~a~~VVlA 133 (203)
T PF13738_consen 63 SFSFDDSP--EWRWPHDFPSGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDG-DGWTVTTRDGR----TIRADRVVLA 133 (203)
T ss_dssp HSCHHHHH--HHHHSBSSEBHHHHHHHHHHHHHHTTGG--EETS--EEEEEEET-TTEEEEETTS-----EEEEEEEEE-
T ss_pred ccccccCC--CCCCCcccCCHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEec-cEEEEEEEecc----eeeeeeEEEe
Confidence 000000 0011345677899999999999999999 99999999999998 77999998873 8899999999
Q ss_pred eCCCCCcccCCCCC-CCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 162 NGHFSVPRLAQVPG-IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 162 tG~~s~~~~p~~~g-~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
||..+.|+.|.+++ ... ..+|+..+.+...+++++|+|||+|.+|+|+|..|++.|++|++++|++
T Consensus 134 tG~~~~p~~p~~~g~~~~---~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 134 TGHYSHPRIPDIPGSAFR---PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp --SSCSB---S-TTGGCS---EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred eeccCCCCcccccccccc---ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 99888999999998 222 6788888888778899999999999999999999999999999999987
|
... |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-29 Score=241.69 Aligned_cols=258 Identities=16% Similarity=0.225 Sum_probs=183.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc----CCcEEEEeeCCCcc-ceeecCCCCCCCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVG-GSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~----g~~v~lie~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
+++|||||+|+||+.+|..|.++ +++|+||++++.++ ..+.. ...
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L----------------------~~~-------- 52 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHL----------------------SSY-------- 52 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcc----------------------hHh--------
Confidence 46899999999999999999865 47999999976541 00000 000
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
+... ..+++.....++..+.+++ ++.+++|++|+.. ...|++.++. .+.||
T Consensus 53 ------~~~~--------------~~~~l~~~~~~~~~~~gI~--~~~g~~V~~Id~~---~~~V~~~~G~----~i~yD 103 (847)
T PRK14989 53 ------FSHH--------------TAEELSLVREGFYEKHGIK--VLVGERAITINRQ---EKVIHSSAGR----TVFYD 103 (847)
T ss_pred ------HcCC--------------CHHHccCCCHHHHHhCCCE--EEcCCEEEEEeCC---CcEEEECCCc----EEECC
Confidence 0000 0133333445556677888 8888999999763 3566666654 79999
Q ss_pred EEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 157 ~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+||+||| +.|+.|+++|.+.. ..+......+. ....+++++|||+|++|+|+|..|++.|.+|+++++.+.
T Consensus 104 ~LVIATG--s~p~~p~ipG~~~~--~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ 179 (847)
T PRK14989 104 KLIMATG--SYPWIPPIKGSETQ--DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM 179 (847)
T ss_pred EEEECCC--CCcCCCCCCCCCCC--CeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 9999999 88999999987642 11211111111 122568999999999999999999999999999998774
Q ss_pred -----------ccccccCCCCC-CeEEecceeEEecCC-----cEEEccCcEEecCEEEEcccCCCccCcccccCchhhh
Q 018550 232 -----------DETHEKQPGYD-NMWLHSMVERANEDG-----TVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL 294 (354)
Q Consensus 232 -----------~~~~~~l~~~~-~~~~~~~v~~v~~~~-----~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~ 294 (354)
....+.+++.+ +++.++.++++..++ .+++++|+++++|+||+|+|++ ||+++++..+..
T Consensus 180 ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r---Pn~~L~~~~Gl~ 256 (847)
T PRK14989 180 LMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR---PQDKLATQCGLA 256 (847)
T ss_pred chhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc---cCchHHhhcCcc
Confidence 11233445555 899999999997432 1677899999999999999999 888876544432
Q ss_pred ----------------hceeeeecccchh----------hHHHHHHHhhhccCCCcc
Q 018550 295 ----------------LWMTIVLGHCTST----------FFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 295 ----------------~~~i~a~GD~~~~----------~~~~~~~~~~~~~~~~~~ 325 (354)
..+|||+|||+.. .+.++...|.++.|....
T Consensus 257 ~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~ 313 (847)
T PRK14989 257 VAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENA 313 (847)
T ss_pred CCCCCcEEECCCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcC
Confidence 2349999999962 356777788888876544
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=225.41 Aligned_cols=265 Identities=20% Similarity=0.259 Sum_probs=175.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++|+|||||++|+++|..|++++ .+|+|||+++.++ +.. +.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~-~~---------------------------------- 43 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGA-CG---------------------------------- 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eec-CC----------------------------------
Confidence 47999999999999999999975 5899999986542 110 00
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
+++.. ...+....++..+..+.+.+.+++ ++++++|++|+.++ +.+.+.... .+....+.||+||+
T Consensus 44 --~~~~~--------~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~-~~v~~~~~~-~~~~~~~~yd~lvi 109 (444)
T PRK09564 44 --LPYFV--------GGFFDDPNTMIARTPEEFIKSGID--VKTEHEVVKVDAKN-KTITVKNLK-TGSIFNDTYDKLMI 109 (444)
T ss_pred --CceEe--------ccccCCHHHhhcCCHHHHHHCCCe--EEecCEEEEEECCC-CEEEEEECC-CCCEEEecCCEEEE
Confidence 00000 000011133344445556667888 88899999998765 444443321 11122344999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-- 231 (354)
||| ++|+.|.++|.+.. ..++...+.+. ....+++++|||+|++|+|+|..+.+.|++|+++.+.+.
T Consensus 110 AtG--~~~~~~~i~g~~~~--~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 185 (444)
T PRK09564 110 ATG--ARPIIPPIKNINLE--NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL 185 (444)
T ss_pred CCC--CCCCCCCCCCcCCC--CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence 999 88888888886531 22322221110 112468999999999999999999999999999988663
Q ss_pred ---------ccccccCCCCC-CeEEecceeEEecCCcE--EEccCcEEecCEEEEcccCCCccCcccccCchhhh-----
Q 018550 232 ---------DETHEKQPGYD-NMWLHSMVERANEDGTV--VFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL----- 294 (354)
Q Consensus 232 ---------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v--~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~----- 294 (354)
+...+.+++.+ +++.++.|+++.+++.+ ...++.++++|.+++|+|+. |+++++++.+..
T Consensus 186 ~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~---p~~~~l~~~gl~~~~~g 262 (444)
T PRK09564 186 PDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVK---PNTEFLEDTGLKTLKNG 262 (444)
T ss_pred chhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCC---cCHHHHHhcCccccCCC
Confidence 11122334444 88899999999765542 23455689999999999999 777766554332
Q ss_pred -----------hceeeeecccchh----------------hHHHHHHHhhhccCCCcc
Q 018550 295 -----------LWMTIVLGHCTST----------------FFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 295 -----------~~~i~a~GD~~~~----------------~~~~~~~~~~~~~~~~~~ 325 (354)
..+|||+|||+.. ...|+...+.++.+....
T Consensus 263 ~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~ 320 (444)
T PRK09564 263 AIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVS 320 (444)
T ss_pred CEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCC
Confidence 1349999999862 235566667788765443
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=217.62 Aligned_cols=244 Identities=17% Similarity=0.242 Sum_probs=167.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
++++|||||||++|+.+|..|.+.. .++++||+++..- +..+......+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl---------------------------~~plL~eva~g-- 52 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL---------------------------FTPLLYEVATG-- 52 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc---------------------------cchhhhhhhcC--
Confidence 4689999999999999999999975 8999999976331 11111111110
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
..+..++...++..+...+ ++ + ...+|++|+.++ .+|++.++. ++.||+
T Consensus 53 --------------------~l~~~~i~~p~~~~~~~~~~v~--~-~~~~V~~ID~~~---k~V~~~~~~----~i~YD~ 102 (405)
T COG1252 53 --------------------TLSESEIAIPLRALLRKSGNVQ--F-VQGEVTDIDRDA---KKVTLADLG----EISYDY 102 (405)
T ss_pred --------------------CCChhheeccHHHHhcccCceE--E-EEEEEEEEcccC---CEEEeCCCc----cccccE
Confidence 0111455555666666444 54 3 358899999854 566666643 899999
Q ss_pred EEEeeCCCCCcccCCCCCCCCCCcceeecccC-----------CCCCCC----CCCeEEEEccCCCHHHHHHHHhccC--
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-----------RIPNPF----QDQVVILIGHYASGLDIKRDLAGFA-- 220 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~-----------~~~~~~----~~~~v~ViG~G~~g~e~a~~l~~~g-- 220 (354)
||+|+| +.+..+.++|..++....-...+. ...... .-.+++|+|||++|+|+|.+|+++-
T Consensus 103 LVvalG--s~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~ 180 (405)
T COG1252 103 LVVALG--SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHR 180 (405)
T ss_pred EEEecC--CcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHH
Confidence 999999 899999999977642111110000 000101 1247999999999999999997642
Q ss_pred -----------CEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCcEEEccCc-EEecCEEEEccc
Q 018550 221 -----------KEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGR-VVSADVIMHCTG 277 (354)
Q Consensus 221 -----------~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~-~~~~D~vi~a~G 277 (354)
.+|+++.+.+. +...+.|++.+ ++++++.|+++++++ |++++|. +|++|++|||+|
T Consensus 181 l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-v~~~~g~~~I~~~tvvWaaG 259 (405)
T COG1252 181 LLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-VTLKDGEEEIPADTVVWAAG 259 (405)
T ss_pred HhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc-EEEccCCeeEecCEEEEcCC
Confidence 17999999885 33344556666 999999999999999 9999987 499999999999
Q ss_pred CCCccCcccccCchhhh---------------hceeeeecccchh
Q 018550 278 LTGTSTTTLFLKPMALL---------------LWMTIVLGHCTST 307 (354)
Q Consensus 278 ~~~~~p~~~~l~~~~~~---------------~~~i~a~GD~~~~ 307 (354)
.+++ |...-+.+.... ..+||++|||+.-
T Consensus 260 v~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~ 303 (405)
T COG1252 260 VRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAV 303 (405)
T ss_pred CcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccC
Confidence 9954 222211111111 1339999999963
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=235.77 Aligned_cols=254 Identities=14% Similarity=0.200 Sum_probs=180.3
Q ss_pred EEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccce-eecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 5 VAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGS-WIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 5 vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
|||||+|+||+.+|.+|++. +++|+|||+++.++-. +.. +
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L------------------------------~------ 44 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILL------------------------------S------ 44 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccc------------------------------c------
Confidence 68999999999999999875 4699999998754200 000 0
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
.+.. ...+.+++.....+++++.+++ ++++++|++|+.. .++|.+.++. ++.||+||+
T Consensus 45 -~~l~------------g~~~~~~l~~~~~~~~~~~gv~--~~~g~~V~~Id~~---~k~V~~~~g~----~~~yD~LVl 102 (785)
T TIGR02374 45 -SVLQ------------GEADLDDITLNSKDWYEKHGIT--LYTGETVIQIDTD---QKQVITDAGR----TLSYDKLIL 102 (785)
T ss_pred -HHHC------------CCCCHHHccCCCHHHHHHCCCE--EEcCCeEEEEECC---CCEEEECCCc----EeeCCEEEE
Confidence 0000 0001133333334556677888 8999999999874 3567776664 799999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---- 231 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---- 231 (354)
||| +.|+.|+++|.+.. .++......+ .....+++++|||+|.+|+|+|..|++.|.+|+++.+.+.
T Consensus 103 ATG--s~p~~p~ipG~~~~--~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~ 178 (785)
T TIGR02374 103 ATG--SYPFILPIPGADKK--GVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK 178 (785)
T ss_pred CCC--CCcCCCCCCCCCCC--CEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh
Confidence 999 88999999987642 1222111101 0112468999999999999999999999999999998764
Q ss_pred -------ccccccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCCccCcccccCchhhh------
Q 018550 232 -------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL------ 294 (354)
Q Consensus 232 -------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------ 294 (354)
....+.+++.+ +++.++.++++..++. |+++||+++++|+||+|+|++ ||++++...+..
T Consensus 179 ~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~---Pn~~la~~~gl~~~ggI~ 255 (785)
T TIGR02374 179 QLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIR---PNDELAVSAGIKVNRGII 255 (785)
T ss_pred hcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCC---cCcHHHHhcCCccCCCEE
Confidence 11223344555 8999999999876543 778899999999999999999 777776443221
Q ss_pred --------hceeeeecccch----------hhHHHHHHHhhhccCCC
Q 018550 295 --------LWMTIVLGHCTS----------TFFRQSWHQAFHLLGYH 323 (354)
Q Consensus 295 --------~~~i~a~GD~~~----------~~~~~~~~~~~~~~~~~ 323 (354)
..+|||+|||+. +.+.|+...|.++.|..
T Consensus 256 Vd~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 256 VNDSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred ECCCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 245999999985 23577888888998765
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-28 Score=200.72 Aligned_cols=256 Identities=21% Similarity=0.257 Sum_probs=204.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||.++|...++.|++.-++- +.+||+....-.+.| |.
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IEN------------------------------fI 258 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIEN------------------------------FI 258 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchhh------------------------------ee
Confidence 4799999999999999999999999988885 478888876422221 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC--CCcEEEEEeecCCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+.+.-.. .++...+.+..+++.+. +..-.+.+++.+.. .+...+++++|. .++++.+|
T Consensus 259 sv~~teG--------------pkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~~~l~ev~l~nGa----vLkaktvI 318 (520)
T COG3634 259 SVPETEG--------------PKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVEGGLIEVELANGA----VLKARTVI 318 (520)
T ss_pred ccccccc--------------hHHHHHHHHHHhhcCch--hhhhhhhhcceecCCCCccEEEEecCCc----eeccceEE
Confidence 2222222 77888899999998888 66667777887742 256788999987 89999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---c-ccc
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---D-ETH 235 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---~-~~~ 235 (354)
+||| +++|...+||.++|..+....|..|+...+++|+|+|||||.+|+|.|..|+..-..||++.-.+. + -+.
T Consensus 319 lstG--ArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq 396 (520)
T COG3634 319 LATG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQ 396 (520)
T ss_pred EecC--cchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHH
Confidence 9999 899999999999999999999999999999999999999999999999999999999999998775 2 233
Q ss_pred ccCCC--CCCeEEecceeEEecCCc----EEEcc---C--cEEecCEEEEcccCCCccCcccccCchhhhh---------
Q 018550 236 EKQPG--YDNMWLHSMVERANEDGT----VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMALLL--------- 295 (354)
Q Consensus 236 ~~l~~--~~~~~~~~~v~~v~~~~~----v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~~--------- 295 (354)
+++.. +..++.+.+.+++.+++. +.+.+ | ..+.-+-|++-+|.. ||++||++.....
T Consensus 397 ~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~---PNT~WLkg~vel~~rGEIivD~ 473 (520)
T COG3634 397 DKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLL---PNTEWLKGAVELNRRGEIIVDA 473 (520)
T ss_pred HHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecc---cChhHhhchhhcCcCccEEEec
Confidence 44433 347889999999998854 44443 3 345677899999999 9999998775542
Q ss_pred ------ceeeeecccchhhHHHHHH
Q 018550 296 ------WMTIVLGHCTSTFFRQSWH 314 (354)
Q Consensus 296 ------~~i~a~GD~~~~~~~~~~~ 314 (354)
.+|||+|||...++.|...
T Consensus 474 ~g~TsvpGvFAAGD~T~~~yKQIII 498 (520)
T COG3634 474 RGETNVPGVFAAGDCTTVPYKQIII 498 (520)
T ss_pred CCCcCCCceeecCcccCCccceEEE
Confidence 3399999999988877653
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=219.64 Aligned_cols=236 Identities=22% Similarity=0.289 Sum_probs=160.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|+++|++|+++|+.+.+||.+.+. ++
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip 184 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG-----------------------------------IP 184 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec-----------------------------------CC
Confidence 5789999999999999999999999999999988889888651 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.++. .++..+..+.+++++++ +++++.+.. .+...+.. ..+.||.||+|
T Consensus 185 ~~~l~~---------------~~~~~~~~~~~~~~gv~--i~~~~~v~~---------~v~~~~~~---~~~~~d~viiA 235 (464)
T PRK12831 185 EFRLPK---------------ETVVKKEIENIKKLGVK--IETNVVVGK---------TVTIDELL---EEEGFDAVFIG 235 (464)
T ss_pred CccCCc---------------cHHHHHHHHHHHHcCCE--EEcCCEECC---------cCCHHHHH---hccCCCEEEEe
Confidence 111111 33556666777788888 888775521 12222211 14579999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccC-------------CCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY-------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~-------------~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
||+ ..|+.++++|.+.. .++....+ .+.....+++|+|||+|.+|+|+|..+.+.|.+|++++|
T Consensus 236 tGa-~~~~~l~ipG~~~~--gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r 312 (464)
T PRK12831 236 SGA-GLPKFMGIPGENLN--GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYR 312 (464)
T ss_pred CCC-CCCCCCCCCCcCCc--CcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEee
Confidence 994 26888888886531 12221111 111234689999999999999999999999999999998
Q ss_pred cCCcc------ccccCCCCC-CeEEecceeEEec--CCc---EEEc------------------cC--cEEecCEEEEcc
Q 018550 229 SVADE------THEKQPGYD-NMWLHSMVERANE--DGT---VVFR------------------NG--RVVSADVIMHCT 276 (354)
Q Consensus 229 ~~~~~------~~~~l~~~~-~~~~~~~v~~v~~--~~~---v~~~------------------~g--~~~~~D~vi~a~ 276 (354)
++..+ .+..+.+.+ ++++...+.++.. ++. |.+. +| .++++|+||+|+
T Consensus 313 ~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~Ai 392 (464)
T PRK12831 313 RSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSL 392 (464)
T ss_pred cCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECC
Confidence 76311 112233344 7888888888763 332 2221 22 268999999999
Q ss_pred cCCCccCcccccCc-hhh-----------------hhceeeeecccchh
Q 018550 277 GLTGTSTTTLFLKP-MAL-----------------LLWMTIVLGHCTST 307 (354)
Q Consensus 277 G~~~~~p~~~~l~~-~~~-----------------~~~~i~a~GD~~~~ 307 (354)
|+. |++.++.. .+. ...+|||+|||...
T Consensus 393 G~~---p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g 438 (464)
T PRK12831 393 GTS---PNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTG 438 (464)
T ss_pred CCC---CChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCC
Confidence 999 66655432 111 12359999999874
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=219.78 Aligned_cols=245 Identities=17% Similarity=0.259 Sum_probs=160.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|||||||+||+.+|..|.+.+.+|+|||+++.+- + ..+ .+....+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~----~-----------------------~~~---l~~~~~g-- 57 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML----F-----------------------TPL---LPQTTTG-- 57 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc----h-----------------------hhh---HHHhccc--
Confidence 4789999999999999999987789999999875331 0 000 0000000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC----CceEEEEeCE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD----DVVEEETFDA 157 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~----~~~~~~~~d~ 157 (354)
....+++...++..+...+++ + ...+|++|+.++ +.+.+...+.. ....++.||+
T Consensus 58 -----------------~~~~~~~~~~~~~~~~~~~~~--~-i~~~V~~Id~~~-~~v~~~~~~~~~~~~~~g~~i~yD~ 116 (424)
T PTZ00318 58 -----------------TLEFRSICEPVRPALAKLPNR--Y-LRAVVYDVDFEE-KRVKCGVVSKSNNANVNTFSVPYDK 116 (424)
T ss_pred -----------------CCChHHhHHHHHHHhccCCeE--E-EEEEEEEEEcCC-CEEEEecccccccccCCceEecCCE
Confidence 000144444455555555665 4 458999998765 55555321110 1124799999
Q ss_pred EEEeeCCCCCcccCCCCCCCCC--Ccceeec-ccC----------C---C--C-CCCCCCeEEEEccCCCHHHHHHHHhc
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSW--PGKQMHS-HNY----------R---I--P-NPFQDQVVILIGHYASGLDIKRDLAG 218 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~--~~~~~~~-~~~----------~---~--~-~~~~~~~v~ViG~G~~g~e~a~~l~~ 218 (354)
||+||| +.+..+.+||..+. ..+.+.. ... . . . .....++++|||+|++|+|+|..|++
T Consensus 117 LViAtG--s~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~ 194 (424)
T PTZ00318 117 LVVAHG--ARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELAD 194 (424)
T ss_pred EEECCC--cccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHH
Confidence 999999 88888888887542 1110100 000 0 0 0 01123589999999999999999975
Q ss_pred --------------cCCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEE
Q 018550 219 --------------FAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIM 273 (354)
Q Consensus 219 --------------~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi 273 (354)
.+.+|+++++.+. +...+.|++.+ +++.++.|+++.++. |++++|+++++|++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~~-v~~~~g~~i~~d~vi 273 (424)
T PTZ00318 195 FFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDKE-VVLKDGEVIPTGLVV 273 (424)
T ss_pred HHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCCE-EEECCCCEEEccEEE
Confidence 3688999998763 22334455555 889999999998776 889999999999999
Q ss_pred EcccCCCccCcccccCchhh-----------------hhceeeeecccch
Q 018550 274 HCTGLTGTSTTTLFLKPMAL-----------------LLWMTIVLGHCTS 306 (354)
Q Consensus 274 ~a~G~~~~~p~~~~l~~~~~-----------------~~~~i~a~GD~~~ 306 (354)
|++|.+++ + ++..++. ...+|||+|||+.
T Consensus 274 ~~~G~~~~-~---~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~ 319 (424)
T PTZ00318 274 WSTGVGPG-P---LTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAA 319 (424)
T ss_pred EccCCCCc-c---hhhhcCCcccCCCcEEeCCCcccCCCCCEEEEecccc
Confidence 99999943 2 2221111 1245999999996
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=215.38 Aligned_cols=232 Identities=24% Similarity=0.360 Sum_probs=160.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-----------------------------------ip 177 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG-----------------------------------IP 177 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec-----------------------------------CC
Confidence 4789999999999999999999999999999988888877651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. + .++.....+.+.+.+++ ++.++.+. ..+++.+. ...||+||+|
T Consensus 178 ~~~~--------------~--~~~~~~~~~~l~~~gv~--~~~~~~v~---------~~v~~~~~-----~~~yd~viiA 225 (449)
T TIGR01316 178 EFRL--------------P--KEIVVTEIKTLKKLGVT--FRMNFLVG---------KTATLEEL-----FSQYDAVFIG 225 (449)
T ss_pred CccC--------------C--HHHHHHHHHHHHhCCcE--EEeCCccC---------CcCCHHHH-----HhhCCEEEEe
Confidence 1100 0 45555555666777887 77766441 12333222 3468999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCC--------------CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~--------------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~ 227 (354)
||+ +.|+.|.++|.+.. .++....+. ......+++++|||+|.+|+|+|..+.+.|++|++++
T Consensus 226 tGa-~~p~~~~ipG~~~~--gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~ 302 (449)
T TIGR01316 226 TGA-GLPKLMNIPGEELC--GVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLY 302 (449)
T ss_pred CCC-CCCCcCCCCCCCCC--CcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence 994 26888888886531 122211110 1112367999999999999999999999999999999
Q ss_pred ecCCc------cccccCCCCC-CeEEecceeEEecC--Cc---EEEc---------cC-----------cEEecCEEEEc
Q 018550 228 RSVAD------ETHEKQPGYD-NMWLHSMVERANED--GT---VVFR---------NG-----------RVVSADVIMHC 275 (354)
Q Consensus 228 r~~~~------~~~~~l~~~~-~~~~~~~v~~v~~~--~~---v~~~---------~g-----------~~~~~D~vi~a 275 (354)
+++.. ..++.+.+.+ ++++++.+.++..+ ++ |++. +| .++++|.||+|
T Consensus 303 ~~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~A 382 (449)
T TIGR01316 303 RRTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVA 382 (449)
T ss_pred ecCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEEC
Confidence 97641 2223444555 88888888888642 32 3332 22 36899999999
Q ss_pred ccCCCccCcccccCchhhh----------------hceeeeecccch
Q 018550 276 TGLTGTSTTTLFLKPMALL----------------LWMTIVLGHCTS 306 (354)
Q Consensus 276 ~G~~~~~p~~~~l~~~~~~----------------~~~i~a~GD~~~ 306 (354)
+|+. |++.++...+.. ..+|||+||++.
T Consensus 383 iG~~---p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~ 426 (449)
T TIGR01316 383 IGNG---SNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIIL 426 (449)
T ss_pred CCCC---CCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCC
Confidence 9999 666665533221 235999999985
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=223.99 Aligned_cols=247 Identities=22% Similarity=0.270 Sum_probs=164.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~-----------------------------------IP 583 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI-----------------------------------IP 583 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee-----------------------------------cc
Confidence 4789999999999999999999999999999998898887651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. | .++..+..+.+...|++ +++++.+ .+..+ +. ....||+||+|
T Consensus 584 ~~Rl--------------p--~evL~~die~l~~~GVe--~~~gt~V-di~le----------~L----~~~gYDaVILA 630 (1019)
T PRK09853 584 QFRI--------------P--AELIQHDIEFVKAHGVK--FEFGCSP-DLTVE----------QL----KNEGYDYVVVA 630 (1019)
T ss_pred cccc--------------c--HHHHHHHHHHHHHcCCE--EEeCcee-EEEhh----------hh----eeccCCEEEEC
Confidence 1111 0 34455555666777888 8888776 22221 11 24569999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCC------CCCCCCCCeEEEEccCCCHHHHHHHHhcc-C-CEEEEEEecCC--
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR------IPNPFQDQVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSVA-- 231 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~-g-~~v~~~~r~~~-- 231 (354)
||++ .++.+.++|... .++....+. ......+++|+|||||.+|+|+|..+.+. | ++|+++.|++.
T Consensus 631 TGA~-~~~~l~IpG~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~ 706 (1019)
T PRK09853 631 IGAD-KNGGLKLEGGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQE 706 (1019)
T ss_pred cCCC-CCCCCCCCCccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccc
Confidence 9953 345556776542 122221111 11223589999999999999999998887 4 48999999763
Q ss_pred ----ccccccC-CCCCCeEEecceeEEecCCcEE-------------------EccCcEEecCEEEEcccCCCccCcccc
Q 018550 232 ----DETHEKQ-PGYDNMWLHSMVERANEDGTVV-------------------FRNGRVVSADVIMHCTGLTGTSTTTLF 287 (354)
Q Consensus 232 ----~~~~~~l-~~~~~~~~~~~v~~v~~~~~v~-------------------~~~g~~~~~D~vi~a~G~~~~~p~~~~ 287 (354)
++.+... ++..+++....+.++..++.+. ..++.++++|+||+|+|.. |++++
T Consensus 707 MPA~~eEle~AleeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~---Pntel 783 (1019)
T PRK09853 707 MPAWREEYEEALEDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ---VDTEL 783 (1019)
T ss_pred ccccHHHHHHHHHcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc---CChhH
Confidence 1112222 2333777777777775433221 1223579999999999999 77777
Q ss_pred cCchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 288 LKPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 288 l~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
+...+.. ..+|||+||++.. +..++..+|.++.+..
T Consensus 784 le~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 784 LKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred HHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 6543321 2359999999852 3556666777775543
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=192.96 Aligned_cols=274 Identities=20% Similarity=0.306 Sum_probs=183.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC--------CCccceeecCCCCCCCCCCCCCCCCcccccccccchhcc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG--------EQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~--------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
.+|++|||||.+|++||++++..|.+|.++|-= ..+||+|.+ .||+|.+.|-...+.-+-.++.
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvN--------VGCIPKKLMHQAallG~al~da 90 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVN--------VGCIPKKLMHQAALLGEALHDA 90 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeee--------cccccHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999851 224677776 6999987665444332222222
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-----CcEEEEEeecCC
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-----NKWKVKSRKKDD 148 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-----~~~~v~~~~g~~ 148 (354)
. .+.|... ....-++|..+.+.+++.+...+.--++.++. ..+...+. +.+.+...+..+
T Consensus 91 ~-------kyGW~~~------e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre--KkV~Y~NsygeFv~~h~I~at~~~g 155 (503)
T KOG4716|consen 91 R-------KYGWNVD------EQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE--KKVEYINSYGEFVDPHKIKATNKKG 155 (503)
T ss_pred H-------hhCCCCc------cccccccHHHHHHHHHHHhhhccceEEEEecc--ceeeeeecceeecccceEEEecCCC
Confidence 2 2333321 22445678999999999998876542233322 22222211 334444444334
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
++..+.++.+++||| .+|+.|++||..++ .+.+.+.... .+.|-+-+|||+|++|+|+|..|+..|..|+++.|
T Consensus 156 k~~~~ta~~fvIatG--~RPrYp~IpG~~Ey---~ITSDDlFsl-~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVR 229 (503)
T KOG4716|consen 156 KERFLTAENFVIATG--LRPRYPDIPGAKEY---GITSDDLFSL-PYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVR 229 (503)
T ss_pred ceEEeecceEEEEec--CCCCCCCCCCceee---eecccccccc-cCCCCceEEEccceeeeehhhhHhhcCCCcEEEEE
Confidence 567899999999999 99999999998773 3555444433 33455678999999999999999999999999999
Q ss_pred cCC----ccc-----cccCCCCC-CeEEecceeEEe--cCCc--EEEcc---C--cEEecCEEEEcccCCCccCcccccC
Q 018550 229 SVA----DET-----HEKQPGYD-NMWLHSMVERAN--EDGT--VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLK 289 (354)
Q Consensus 229 ~~~----~~~-----~~~l~~~~-~~~~~~~v~~v~--~~~~--v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~ 289 (354)
+-. ++. .+.|++.+ .++.++..+.++ .+++ |...+ + .+-.+|+|+||.|+. ++++-+.
T Consensus 230 SI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~---~~~~~l~ 306 (503)
T KOG4716|consen 230 SILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRK---ALTDDLN 306 (503)
T ss_pred EeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccc---cchhhcC
Confidence 875 332 33345666 777776666666 3343 33222 2 234599999999999 5554432
Q ss_pred --chhhh-----------------hceeeeecccchh
Q 018550 290 --PMALL-----------------LWMTIVLGHCTST 307 (354)
Q Consensus 290 --~~~~~-----------------~~~i~a~GD~~~~ 307 (354)
..+.. ...|||+||+...
T Consensus 307 L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~ 343 (503)
T KOG4716|consen 307 LDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILED 343 (503)
T ss_pred CCccceeecccCCccccChHHhcCCCceEEecceecC
Confidence 22221 1229999999984
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=219.86 Aligned_cols=234 Identities=18% Similarity=0.238 Sum_probs=159.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||++||..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG-----------------------------------IP 350 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG-----------------------------------IP 350 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc-----------------------------------CC
Confidence 4799999999999999999999999999999999999998761 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
++.. ..++.+...+.+..+|++ ++.++.+- ..++..+. ....||+|++|
T Consensus 351 ~~rl----------------p~~vi~~~i~~l~~~Gv~--f~~n~~vG---------~dit~~~l----~~~~yDAV~LA 399 (944)
T PRK12779 351 EFRL----------------PNQLIDDVVEKIKLLGGR--FVKNFVVG---------KTATLEDL----KAAGFWKIFVG 399 (944)
T ss_pred CCcC----------------hHHHHHHHHHHHHhhcCe--EEEeEEec---------cEEeHHHh----ccccCCEEEEe
Confidence 1111 156677777777888988 88776541 12344332 14579999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCC---------------CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR---------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~---------------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~ 226 (354)
||+ ..|+.+++||.+.. .++...++. ......+++|+|||||.+|+|+|..+.+.|++|+++
T Consensus 400 tGA-~~pr~l~IpG~dl~--GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv 476 (944)
T PRK12779 400 TGA-GLPTFMNVPGEHLL--GVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIV 476 (944)
T ss_pred CCC-CCCCcCCCCCCcCc--CcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence 995 36888889886531 111111110 011236799999999999999999999999999999
Q ss_pred EecCCc------cccccC-CCCCCeEEecceeEEecC--C-cE---EE---------c--------cC--cEEecCEEEE
Q 018550 227 SRSVAD------ETHEKQ-PGYDNMWLHSMVERANED--G-TV---VF---------R--------NG--RVVSADVIMH 274 (354)
Q Consensus 227 ~r~~~~------~~~~~l-~~~~~~~~~~~v~~v~~~--~-~v---~~---------~--------~g--~~~~~D~vi~ 274 (354)
+|++.. ..+... ++..+++....++++..+ + .| .+ . +| .++++|+||+
T Consensus 477 ~rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~ 556 (944)
T PRK12779 477 YRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIM 556 (944)
T ss_pred EecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEE
Confidence 987631 111112 233377777777777543 1 12 11 1 22 3689999999
Q ss_pred cccCCCccCcccccCc---h-----h----------hhhceeeeecccchh
Q 018550 275 CTGLTGTSTTTLFLKP---M-----A----------LLLWMTIVLGHCTST 307 (354)
Q Consensus 275 a~G~~~~~p~~~~l~~---~-----~----------~~~~~i~a~GD~~~~ 307 (354)
|+|+. |+..+... . + ....+|||+|||+..
T Consensus 557 AiG~~---p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G 604 (944)
T PRK12779 557 ALGNT---ANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARG 604 (944)
T ss_pred cCCcC---CChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCC
Confidence 99999 44432211 0 0 112459999999974
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-26 Score=210.06 Aligned_cols=233 Identities=23% Similarity=0.308 Sum_probs=159.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+.+. ++
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g-----------------------------------ip 184 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG-----------------------------------IP 184 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc-----------------------------------CC
Confidence 4789999999999999999999999999999988888776541 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+. . ..++..+..+.+.+++++ ++.++.+.. .++..+. .+.||+||+|
T Consensus 185 ~~~--~--------------~~~~~~~~~~~l~~~gv~--~~~~~~v~~---------~v~~~~~-----~~~~d~vvlA 232 (457)
T PRK11749 185 EFR--L--------------PKDIVDREVERLLKLGVE--IRTNTEVGR---------DITLDEL-----RAGYDAVFIG 232 (457)
T ss_pred Ccc--C--------------CHHHHHHHHHHHHHcCCE--EEeCCEECC---------ccCHHHH-----HhhCCEEEEc
Confidence 010 0 156667777777778888 777776521 1122221 3689999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCC--------CCCCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEEEEecCC-
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------IPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVA- 231 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~~r~~~- 231 (354)
||++ .++.+.++|.+.. .+++...+. ......+++|+|||+|.+|+|+|..+.+.|. +|+++++++.
T Consensus 233 tGa~-~~~~~~i~G~~~~--gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~ 309 (457)
T PRK11749 233 TGAG-LPRFLGIPGENLG--GVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE 309 (457)
T ss_pred cCCC-CCCCCCCCCccCC--CcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc
Confidence 9952 4666777776531 122211110 0112368999999999999999999999987 8999998653
Q ss_pred -----ccccccCCCCC-CeEEecceeEEecCCc----EEEc-------------------cCcEEecCEEEEcccCCCcc
Q 018550 232 -----DETHEKQPGYD-NMWLHSMVERANEDGT----VVFR-------------------NGRVVSADVIMHCTGLTGTS 282 (354)
Q Consensus 232 -----~~~~~~l~~~~-~~~~~~~v~~v~~~~~----v~~~-------------------~g~~~~~D~vi~a~G~~~~~ 282 (354)
....+.+.+.+ ++++++.+.++..++. |++. ++.++++|.||+|+|++
T Consensus 310 ~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~--- 386 (457)
T PRK11749 310 EMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT--- 386 (457)
T ss_pred cCCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC---
Confidence 12233344445 8899999998875431 4432 22479999999999999
Q ss_pred CcccccCc---h---------------hhhhceeeeecccchh
Q 018550 283 TTTLFLKP---M---------------ALLLWMTIVLGHCTST 307 (354)
Q Consensus 283 p~~~~l~~---~---------------~~~~~~i~a~GD~~~~ 307 (354)
|+..++.. . .....+|||+||+...
T Consensus 387 p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~ 429 (457)
T PRK11749 387 PNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTG 429 (457)
T ss_pred CCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCC
Confidence 66554321 1 1112459999999863
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=196.70 Aligned_cols=244 Identities=22% Similarity=0.259 Sum_probs=157.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|++|+++|..|++.|.+|+++|+.+.+|+.+.....
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~----------------------------------- 62 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIP----------------------------------- 62 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCc-----------------------------------
Confidence 468999999999999999999999999999998888877654100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEE---eCCCcEEEEEeecCCceEEEEeCEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL---VESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~---~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
... + ....+.....++ .+.+++ ++.++.+..+.. ...+.+.......+ ...+.||+|
T Consensus 63 ~~~--------------~-~~~~~~~~~~~l-~~~~i~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~l 122 (352)
T PRK12770 63 EFR--------------I-PIERVREGVKEL-EEAGVV--FHTRTKVCCGEPLHEEEGDEFVERIVSLE--ELVKKYDAV 122 (352)
T ss_pred ccc--------------c-CHHHHHHHHHHH-HhCCeE--EecCcEEeeccccccccccccccccCCHH--HHHhhCCEE
Confidence 000 0 013333344443 344777 788777765432 11122222111111 124789999
Q ss_pred EEeeCCCCCcccCCCCCCCCCCcceeecc-------c-------CCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCE-E
Q 018550 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSH-------N-------YRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE-V 223 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~~~~~~~~~~~~-------~-------~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-v 223 (354)
|+|||++ .++.|+++|.+.. .++... . ........+++++|||+|.+|+|+|..|...|.+ |
T Consensus 123 viAtGs~-~~~~~~ipg~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~V 199 (352)
T PRK12770 123 LIATGTW-KSRKLGIPGEDLP--GVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKV 199 (352)
T ss_pred EEEeCCC-CCCcCCCCCcccc--CceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeE
Confidence 9999941 4777888876531 111110 0 0011123478999999999999999999988876 9
Q ss_pred EEEEecCC------ccccccCCCCC-CeEEecceeEEecCCc---EEEc------------------c--CcEEecCEEE
Q 018550 224 HIASRSVA------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFR------------------N--GRVVSADVIM 273 (354)
Q Consensus 224 ~~~~r~~~------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~------------------~--g~~~~~D~vi 273 (354)
+++.+++. ....++|++.+ +++.++.+.++.+++. |.+. + +.++++|.+|
T Consensus 200 tvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi 279 (352)
T PRK12770 200 YLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVV 279 (352)
T ss_pred EEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEE
Confidence 99998653 12233455555 8888888888875443 2221 2 2578999999
Q ss_pred EcccCCCccCcccccCc-hhh----------------hhceeeeecccch
Q 018550 274 HCTGLTGTSTTTLFLKP-MAL----------------LLWMTIVLGHCTS 306 (354)
Q Consensus 274 ~a~G~~~~~p~~~~l~~-~~~----------------~~~~i~a~GD~~~ 306 (354)
+++|++ |++.+..+ .+. ...+||++|||..
T Consensus 280 ~a~G~~---p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~ 326 (352)
T PRK12770 280 FAIGEI---PTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVT 326 (352)
T ss_pred ECcccC---CCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEccccc
Confidence 999999 66555433 111 1245999999987
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-25 Score=215.82 Aligned_cols=234 Identities=22% Similarity=0.329 Sum_probs=157.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip 475 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG-----------------------------------IP 475 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec-----------------------------------CC
Confidence 4789999999999999999999999999999988888887651 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
++.+ | .++.+...+.+.+++++ ++.++.+. . .++..+. ....||+||+|
T Consensus 476 ~~rl--------------p--~~~~~~~~~~l~~~gv~--~~~~~~v~-------~--~v~~~~l----~~~~ydavvlA 524 (752)
T PRK12778 476 EFRL--------------P--KKIVDVEIENLKKLGVK--FETDVIVG-------K--TITIEEL----EEEGFKGIFIA 524 (752)
T ss_pred CCCC--------------C--HHHHHHHHHHHHHCCCE--EECCCEEC-------C--cCCHHHH----hhcCCCEEEEe
Confidence 1111 1 34555555666778888 88776541 1 1222222 24579999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccC----------C---CCCCCCCCeEEEEccCCCHHHHHHHHhccCCE-EEEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY----------R---IPNPFQDQVVILIGHYASGLDIKRDLAGFAKE-VHIAS 227 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~----------~---~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~-v~~~~ 227 (354)
||+ ..++.+.++|.+.. .+++...+ . ......+++|+|||+|.+|+|+|..+.+.|++ |++++
T Consensus 525 tGa-~~~~~l~ipG~~~~--gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~ 601 (752)
T PRK12778 525 SGA-GLPNFMNIPGENSN--GVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVY 601 (752)
T ss_pred CCC-CCCCCCCCCCCCCC--CcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEee
Confidence 995 25888888886531 11221111 0 11224679999999999999999999999986 99999
Q ss_pred ecCCc------cccccCCCCC-CeEEecceeEEecC--Cc---EEEc---------cC-----------cEEecCEEEEc
Q 018550 228 RSVAD------ETHEKQPGYD-NMWLHSMVERANED--GT---VVFR---------NG-----------RVVSADVIMHC 275 (354)
Q Consensus 228 r~~~~------~~~~~l~~~~-~~~~~~~v~~v~~~--~~---v~~~---------~g-----------~~~~~D~vi~a 275 (354)
+++.. ..+..+.+.+ ++++.+.+.++..+ +. |.+. +| .++++|+||+|
T Consensus 602 r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A 681 (752)
T PRK12778 602 RRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVS 681 (752)
T ss_pred ecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEEC
Confidence 87631 1112333444 77878877777532 32 2221 12 35899999999
Q ss_pred ccCCCccCcccccCch-h----------------hhhceeeeecccchh
Q 018550 276 TGLTGTSTTTLFLKPM-A----------------LLLWMTIVLGHCTST 307 (354)
Q Consensus 276 ~G~~~~~p~~~~l~~~-~----------------~~~~~i~a~GD~~~~ 307 (354)
+|+. |+..++... + ....+|||+||+...
T Consensus 682 ~G~~---p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g 727 (752)
T PRK12778 682 VGVS---PNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRG 727 (752)
T ss_pred cCCC---CCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCC
Confidence 9999 555443221 1 112459999999863
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-25 Score=213.66 Aligned_cols=245 Identities=20% Similarity=0.276 Sum_probs=157.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||++||..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~-----------------------------------IP 581 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI-----------------------------------IP 581 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-----------------------------------cc
Confidence 4789999999999999999999999999999998899887651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. | .+..++..+.+..+|++ ++++... . ++..+. ....||+||+|
T Consensus 582 ~~rl--------------p--~e~l~~~ie~l~~~GVe--~~~g~~~--------d---~~ve~l----~~~gYDaVIIA 628 (1012)
T TIGR03315 582 EFRI--------------S--AESIQKDIELVKFHGVE--FKYGCSP--------D---LTVAEL----KNQGYKYVILA 628 (1012)
T ss_pred ccCC--------------C--HHHHHHHHHHHHhcCcE--EEEeccc--------c---eEhhhh----hcccccEEEEC
Confidence 1110 0 34444555566667877 7665321 0 111111 14568999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccC----CC--CCCCCCCeEEEEccCCCHHHHHHHHhcc-C-CEEEEEEecCC--
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY----RI--PNPFQDQVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSVA-- 231 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~----~~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~-g-~~v~~~~r~~~-- 231 (354)
||++ .++.+.++|... ..+....+ .. .....+++|+|||||.+|+|+|..+.+. | .+|++++|+..
T Consensus 629 TGA~-~~~~l~I~G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~ 704 (1012)
T TIGR03315 629 IGAW-KHGPLRLEGGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRY 704 (1012)
T ss_pred CCCC-CCCCCCcCCCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 9953 344555666432 12221111 11 1224689999999999999999998876 6 47999998763
Q ss_pred ----ccccc-cCCCCCCeEEecceeEEecCCcEE-----------------EccC--cEEecCEEEEcccCCCccCcccc
Q 018550 232 ----DETHE-KQPGYDNMWLHSMVERANEDGTVV-----------------FRNG--RVVSADVIMHCTGLTGTSTTTLF 287 (354)
Q Consensus 232 ----~~~~~-~l~~~~~~~~~~~v~~v~~~~~v~-----------------~~~g--~~~~~D~vi~a~G~~~~~p~~~~ 287 (354)
.+.+. .+++..+++....+.++.. +.++ +.+| .++++|+||+|+|+. |++++
T Consensus 705 Mpa~~eEl~~aleeGVe~~~~~~p~~I~~-g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~---Pnt~l 780 (1012)
T TIGR03315 705 MPASREELEEALEDGVDFKELLSPESFED-GTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ---VDTDL 780 (1012)
T ss_pred cccCHHHHHHHHHcCCEEEeCCceEEEEC-CeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc---CChHH
Confidence 11111 1233336666666666652 2221 1233 368999999999999 77766
Q ss_pred cCchhhh-----------------hceeeeecccch------hhHHHHHHHhhhccCC
Q 018550 288 LKPMALL-----------------LWMTIVLGHCTS------TFFRQSWHQAFHLLGY 322 (354)
Q Consensus 288 l~~~~~~-----------------~~~i~a~GD~~~------~~~~~~~~~~~~~~~~ 322 (354)
++..+.. ..+|||+|||.. .+..++..+|.++.+.
T Consensus 781 le~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 781 LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred HHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 6433211 235999999984 2356666677777554
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-26 Score=202.98 Aligned_cols=264 Identities=21% Similarity=0.239 Sum_probs=160.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.+|+++||.||+++++|..|.+.+ .++.+||+.+. ..|+.. .+.|...+..+.+.+......|...+.|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~--f~Wh~g--------mll~~~~~q~~fl~Dlvt~~~P~s~~sf 71 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS--FSWHPG--------MLLPGARMQVSFLKDLVTLRDPTSPFSF 71 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGG--------G--SS-B-SS-TTSSSSTTT-TTSTTSH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC--CCcCCc--------cCCCCCccccccccccCcCcCCCCcccH
Confidence 479999999999999999999887 89999998664 345442 2223333334444444444555555544
Q ss_pred cCCCCCccCCCCCC-CCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC---cEEEEEeecCCceEEEEeC
Q 018550 81 QAYPFVARNYEGSV-DLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN---KWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~---~~~v~~~~g~~~~~~~~~d 156 (354)
.+|-....++..+. ....+|++.++.+|+++.+++++.. ++++.+|++|....++ .|.|.+.+.++....+.++
T Consensus 72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar 149 (341)
T PF13434_consen 72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR 149 (341)
T ss_dssp HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES
T ss_pred HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC
Confidence 43332222211111 2345688999999999999999876 8999999999987633 4899987655556799999
Q ss_pred EEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCC--CCCCCCeEEEEccCCCHHHHHHHHhccCC--EEEEEEecCC-
Q 018550 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAK--EVHIASRSVA- 231 (354)
Q Consensus 157 ~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~v~~~~r~~~- 231 (354)
.||+|+| ..|.+|...........++|+.++... ....+++|+|||||.+|+|++..|.+.+. +|++++|++.
T Consensus 150 ~vVla~G--~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 150 NVVLATG--GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp EEEE------EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred eEEECcC--CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 9999999 889988744322122477888766432 24578999999999999999999998864 8999999884
Q ss_pred ---------------------------------c------------ccc----c-----cCCCC--CCeEEecceeEEec
Q 018550 232 ---------------------------------D------------ETH----E-----KQPGY--DNMWLHSMVERANE 255 (354)
Q Consensus 232 ---------------------------------~------------~~~----~-----~l~~~--~~~~~~~~v~~v~~ 255 (354)
. +.+ + ++.+. ..++.++.|+.++.
T Consensus 228 ~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~ 307 (341)
T PF13434_consen 228 FPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQ 307 (341)
T ss_dssp EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEE
T ss_pred CCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEE
Confidence 0 000 0 11111 25677889999874
Q ss_pred CC--c--EEEcc---C--cEEecCEEEEcccCC
Q 018550 256 DG--T--VVFRN---G--RVVSADVIMHCTGLT 279 (354)
Q Consensus 256 ~~--~--v~~~~---g--~~~~~D~vi~a~G~~ 279 (354)
++ . +.+.+ + .++.+|.||+|||++
T Consensus 308 ~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 308 DGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp ES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred CCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 33 3 55554 2 567899999999985
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-24 Score=211.04 Aligned_cols=247 Identities=17% Similarity=0.156 Sum_probs=168.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||++||..|++.|.+|+|+|+++.+||.+.....
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~----------------------------------- 207 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE----------------------------------- 207 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc-----------------------------------
Confidence 368999999999999999999999999999999889888764210
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEE-e-------ecC--Cce
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKS-R-------KKD--DVV 150 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~-~-------~g~--~~~ 150 (354)
..+.. +..++...+.+.+..+ +++ +..+++|..+.... ....+.. . .+. +..
T Consensus 208 ~~~g~--------------~~~~~~~~~~~~l~~~~~v~--v~~~t~V~~i~~~~-~v~~v~~~~~~~~~~~~~~~~~~~ 270 (985)
T TIGR01372 208 TIDGK--------------PAADWAAATVAELTAMPEVT--LLPRTTAFGYYDHN-TVGALERVTDHLDAPPKGVPRERL 270 (985)
T ss_pred ccCCc--------------cHHHHHHHHHHHHhcCCCcE--EEcCCEEEEEecCC-eEEEEEEeeeccccccCCccccce
Confidence 00000 0134434444444444 466 78888888875321 1111110 0 000 112
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeec---ccCCC-CCCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEE
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHS---HNYRI-PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHI 225 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~---~~~~~-~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~ 225 (354)
.++.++.||+||| +.++.|+++|.+. ++ ++.. ..+.. .....+++++|||+|++|+|+|..|++.|. .|++
T Consensus 271 ~~i~a~~VILATG--a~~r~~pipG~~~-pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~v 346 (985)
T TIGR01372 271 WRIRAKRVVLATG--AHERPLVFANNDR-PG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAI 346 (985)
T ss_pred EEEEcCEEEEcCC--CCCcCCCCCCCCC-CC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence 3689999999999 7888888888654 21 1111 11111 122357999999999999999999999994 5788
Q ss_pred EEecCC--ccccccCCCCC-CeEEecceeEEecCCc---EEEc----cCcEEecCEEEEcccCCCccCcccccCchhhh-
Q 018550 226 ASRSVA--DETHEKQPGYD-NMWLHSMVERANEDGT---VVFR----NGRVVSADVIMHCTGLTGTSTTTLFLKPMALL- 294 (354)
Q Consensus 226 ~~r~~~--~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~----~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~- 294 (354)
+.+.+. ....+++++.+ +++.++.++++.+++. |++. ++++++||.|+++.|+. ||++++...+..
T Consensus 347 v~~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~---Pnt~L~~~lg~~~ 423 (985)
T TIGR01372 347 IDARADVSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWT---PVVHLFSQRGGKL 423 (985)
T ss_pred EccCcchhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcC---chhHHHHhcCCCe
Confidence 876553 33344555555 8899999999986653 4554 34789999999999999 888887654432
Q ss_pred --------------hceeeeecccchh
Q 018550 295 --------------LWMTIVLGHCTST 307 (354)
Q Consensus 295 --------------~~~i~a~GD~~~~ 307 (354)
..+||++||+...
T Consensus 424 ~~~~~~~~~~~~t~v~gVyaaGD~~g~ 450 (985)
T TIGR01372 424 AWDAAIAAFLPGDAVQGCILAGAANGL 450 (985)
T ss_pred eeccccCceecCCCCCCeEEeeccCCc
Confidence 2469999999874
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=205.93 Aligned_cols=232 Identities=22% Similarity=0.321 Sum_probs=154.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||+|+++|..|++.|++|++||+.+.+||.+.+. ++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g-----------------------------------ip 237 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG-----------------------------------IP 237 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec-----------------------------------CC
Confidence 3789999999999999999999999999999998899888651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. ..++.++..+.+.++|++ +++++.+ .++ ++..+. ...||.||+|
T Consensus 238 ~~~~----------------~~~~~~~~~~~l~~~Gv~--i~~~~~v-~~d--------v~~~~~-----~~~~DaVilA 285 (652)
T PRK12814 238 RFRL----------------PESVIDADIAPLRAMGAE--FRFNTVF-GRD--------ITLEEL-----QKEFDAVLLA 285 (652)
T ss_pred CCCC----------------CHHHHHHHHHHHHHcCCE--EEeCCcc-cCc--------cCHHHH-----HhhcCEEEEE
Confidence 1110 045556666667778887 7776644 111 111111 2359999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccC-----CCCCCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEEEEecCCc---
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY-----RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVAD--- 232 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~--- 232 (354)
||++ .++.+.++|.+.. + ++....+ .......+++|+|||+|.+|+|+|..+.+.|. +|+++++++..
T Consensus 286 tGa~-~~~~~~ipG~~~~-g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mp 362 (652)
T PRK12814 286 VGAQ-KASKMGIPGEELP-G-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMP 362 (652)
T ss_pred cCCC-CCCCCCCCCcCcC-C-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCC
Confidence 9942 2345677775431 1 1221111 11223468999999999999999999999985 69999987631
Q ss_pred ---ccccc-CCCCCCeEEecceeEEecC-CcE-----EEc---------------cC--cEEecCEEEEcccCCCccCcc
Q 018550 233 ---ETHEK-QPGYDNMWLHSMVERANED-GTV-----VFR---------------NG--RVVSADVIMHCTGLTGTSTTT 285 (354)
Q Consensus 233 ---~~~~~-l~~~~~~~~~~~v~~v~~~-~~v-----~~~---------------~g--~~~~~D~vi~a~G~~~~~p~~ 285 (354)
..+.+ +++..++++...+.++..+ +.+ .+. +| .++++|.||+|+|+. |++
T Consensus 363 a~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~---p~~ 439 (652)
T PRK12814 363 ANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ---VDP 439 (652)
T ss_pred CCHHHHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc---CCc
Confidence 11122 2333488888888777632 221 111 22 258999999999999 776
Q ss_pred cccCchhhh-----------------hceeeeecccch
Q 018550 286 LFLKPMALL-----------------LWMTIVLGHCTS 306 (354)
Q Consensus 286 ~~l~~~~~~-----------------~~~i~a~GD~~~ 306 (354)
+++...+.. ..+|||+||+..
T Consensus 440 ~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~ 477 (652)
T PRK12814 440 PIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVT 477 (652)
T ss_pred ccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCC
Confidence 666433211 235999999985
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=196.82 Aligned_cols=238 Identities=18% Similarity=0.216 Sum_probs=156.2
Q ss_pred eEEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+|||||||+||+.+|..|+++ +.+|+|||+++.. .+ ... .+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----~~-----------------------~~~---~~------ 44 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PY-----------------------SGM---LP------ 44 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----cc-----------------------cch---hh------
Confidence 599999999999999999754 6899999987532 11 000 00
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
.+.. ......++...+.+.+++.+++ +.. .+|++|+.++ .+|.+.++. ++.||+||+
T Consensus 45 -~~~~------------g~~~~~~~~~~~~~~~~~~gv~--~~~-~~v~~id~~~---~~V~~~~g~----~~~yD~Lvi 101 (364)
T TIGR03169 45 -GMIA------------GHYSLDEIRIDLRRLARQAGAR--FVI-AEATGIDPDR---RKVLLANRP----PLSYDVLSL 101 (364)
T ss_pred -HHHh------------eeCCHHHhcccHHHHHHhcCCE--EEE-EEEEEEeccc---CEEEECCCC----cccccEEEE
Confidence 0000 0001144555566677777887 655 6899998754 367776664 789999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceee---ccc----CCC--CCCCCCCeEEEEccCCCHHHHHHHHhcc----C--CEEEE
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMH---SHN----YRI--PNPFQDQVVILIGHYASGLDIKRDLAGF----A--KEVHI 225 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~---~~~----~~~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~----g--~~v~~ 225 (354)
||| +.++.|.++|..+....... ... ... .....+++++|||+|++|+|+|..|++. + .+|++
T Consensus 102 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~l 179 (364)
T TIGR03169 102 DVG--STTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTL 179 (364)
T ss_pred ccC--CCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999 88999998885431100000 000 000 0012357999999999999999999752 3 47999
Q ss_pred EEecCC---------ccccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCc-----
Q 018550 226 ASRSVA---------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKP----- 290 (354)
Q Consensus 226 ~~r~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~----- 290 (354)
+.+... +...+.+++.+ +++.++.++++..+. +++.+|.++++|.+++|+|.+ |+..+...
T Consensus 180 i~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-v~~~~g~~i~~D~vi~a~G~~---p~~~l~~~gl~~~ 255 (364)
T TIGR03169 180 IAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGA-LILADGRTLPADAILWATGAR---APPWLAESGLPLD 255 (364)
T ss_pred EeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCe-EEeCCCCEEecCEEEEccCCC---hhhHHHHcCCCcC
Confidence 943221 11222334444 888999999987654 888899999999999999999 54322110
Q ss_pred ----------hhh-hhceeeeecccch
Q 018550 291 ----------MAL-LLWMTIVLGHCTS 306 (354)
Q Consensus 291 ----------~~~-~~~~i~a~GD~~~ 306 (354)
... ...+|||+|||+.
T Consensus 256 ~~g~i~vd~~l~~~~~~~Iya~GD~~~ 282 (364)
T TIGR03169 256 EDGFLRVDPTLQSLSHPHVFAAGDCAV 282 (364)
T ss_pred CCCeEEECCccccCCCCCEEEeeeeee
Confidence 011 1345999999985
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=209.33 Aligned_cols=212 Identities=19% Similarity=0.321 Sum_probs=144.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g-----------------------------------ip 474 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG-----------------------------------IP 474 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc-----------------------------------CC
Confidence 4789999999999999999999999999999998888877651 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. ..++.+...+.+.++|++ +++++.+ . .. ++..+-. ....||+||+|
T Consensus 475 ~~rl----------------~~e~~~~~~~~l~~~Gv~--~~~~~~v-g------~~--~~~~~l~---~~~~yDaViIA 524 (1006)
T PRK12775 475 SFRL----------------PRDIIDREVQRLVDIGVK--IETNKVI-G------KT--FTVPQLM---NDKGFDAVFLG 524 (1006)
T ss_pred ccCC----------------CHHHHHHHHHHHHHCCCE--EEeCCcc-C------Cc--cCHHHHh---hccCCCEEEEe
Confidence 1110 156677777778888988 8887543 1 11 1211110 02468999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeeccc--------------CCCCCCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHN--------------YRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIA 226 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~--------------~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~ 226 (354)
||+ ..|+.+++||.+. ..+++... +.+.....+++|+|||||.+|+|+|..+.+.|. .|+++
T Consensus 525 TGa-~~pr~l~IpG~~l--~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv 601 (1006)
T PRK12775 525 VGA-GAPTFLGIPGEFA--GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCV 601 (1006)
T ss_pred cCC-CCCCCCCCCCcCC--CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 995 2578888988643 12222211 112223468999999999999999999999986 58899
Q ss_pred EecCCccc------cccCCCCC-CeEEecceeEEec--CCc---EEEc-----------------cC--cEEecCEEEEc
Q 018550 227 SRSVADET------HEKQPGYD-NMWLHSMVERANE--DGT---VVFR-----------------NG--RVVSADVIMHC 275 (354)
Q Consensus 227 ~r~~~~~~------~~~l~~~~-~~~~~~~v~~v~~--~~~---v~~~-----------------~g--~~~~~D~vi~a 275 (354)
+|+...+. ++.+++.+ ++++.+.+.++.. ++. |.+. +| .++++|.||+|
T Consensus 602 ~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~A 681 (1006)
T PRK12775 602 YRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYA 681 (1006)
T ss_pred eecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEEC
Confidence 88654211 22233444 8888888888753 333 2221 12 36899999999
Q ss_pred ccCCCc
Q 018550 276 TGLTGT 281 (354)
Q Consensus 276 ~G~~~~ 281 (354)
+|+.|+
T Consensus 682 iG~~p~ 687 (1006)
T PRK12775 682 LGTKAN 687 (1006)
T ss_pred CCcCCC
Confidence 999943
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-24 Score=186.08 Aligned_cols=239 Identities=17% Similarity=0.283 Sum_probs=173.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
.++++|||+|++|..|+..+.+.|. +++++-+...+ .+ +. -.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----py-----------------------dr---------~~ 117 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----PY-----------------------DR---------AR 117 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----cc-----------------------cc---------hh
Confidence 3689999999999999999999986 78888765322 11 00 00
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
++.+..... ..+.....++.+..+++ +++++.|+.++. ...+|.+.+|. .++|++++
T Consensus 118 Ls~~~~~~~--------------~~~a~r~~e~Yke~gIe--~~~~t~v~~~D~---~~K~l~~~~Ge----~~kys~Li 174 (478)
T KOG1336|consen 118 LSKFLLTVG--------------EGLAKRTPEFYKEKGIE--LILGTSVVKADL---ASKTLVLGNGE----TLKYSKLI 174 (478)
T ss_pred cccceeecc--------------ccccccChhhHhhcCce--EEEcceeEEeec---cccEEEeCCCc----eeecceEE
Confidence 001111000 33334445567788888 999999999998 44677887775 99999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--- 231 (354)
+||| +.++.|+++|.... .+....+..+. .......|+++|+|.+|+|+|..|...+.+||++.+.+.
T Consensus 175 lATG--s~~~~l~~pG~~~~--nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~ 250 (478)
T KOG1336|consen 175 IATG--SSAKTLDIPGVELK--NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP 250 (478)
T ss_pred Eeec--CccccCCCCCcccc--ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh
Confidence 9999 79999999997742 11111111111 122467799999999999999999999999999999874
Q ss_pred --------ccccccCCCCC-CeEEecceeEEecCC--c---EEEccCcEEecCEEEEcccCCCccCcccccCc-hhhhh-
Q 018550 232 --------DETHEKQPGYD-NMWLHSMVERANEDG--T---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKP-MALLL- 295 (354)
Q Consensus 232 --------~~~~~~l~~~~-~~~~~~~v~~v~~~~--~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~-~~~~~- 295 (354)
.....-+++++ +++.++.+.+++.+. + |.+.|++++++|+|++++|.+ ||+.+++. ..+..
T Consensus 251 ~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~---p~t~~~~~g~~~~~~ 327 (478)
T KOG1336|consen 251 RLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK---PNTSFLEKGILLDSK 327 (478)
T ss_pred hhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc---cccccccccceeccc
Confidence 11222235555 899999999998543 4 788999999999999999999 99999873 22221
Q ss_pred -------------ceeeeecccch
Q 018550 296 -------------WMTIVLGHCTS 306 (354)
Q Consensus 296 -------------~~i~a~GD~~~ 306 (354)
.+|||+||++.
T Consensus 328 G~i~V~~~f~t~~~~VyAiGDva~ 351 (478)
T KOG1336|consen 328 GGIKVDEFFQTSVPNVYAIGDVAT 351 (478)
T ss_pred CCEeehhceeeccCCcccccceee
Confidence 23999999998
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=193.58 Aligned_cols=233 Identities=21% Similarity=0.296 Sum_probs=153.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|++|+++|..|++.|++|++||+.+.+||.+.+. ++
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-----------------------------------ip 187 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG-----------------------------------IP 187 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec-----------------------------------CC
Confidence 3789999999999999999999999999999998888877641 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. + .++.....+.+.++|++ +++++.+.. . +...+ ....||.||+|
T Consensus 188 ~~~~--------------~--~~~~~~~~~~~~~~gv~--~~~~~~v~~-~--------~~~~~-----~~~~~d~vvlA 235 (471)
T PRK12810 188 DFKL--------------E--KEVIDRRIELMEAEGIE--FRTNVEVGK-D--------ITAEE-----LLAEYDAVFLG 235 (471)
T ss_pred cccC--------------C--HHHHHHHHHHHHhCCcE--EEeCCEECC-c--------CCHHH-----HHhhCCEEEEe
Confidence 1100 0 44555556667778888 888776521 1 00011 13579999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccC-------------CCCCCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY-------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIAS 227 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~-------------~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~~ 227 (354)
||+ ..++.+.++|.+.. .+.....+ .......+++|+|||+|++|+|+|..+.+.|. +|+.+.
T Consensus 236 tGa-~~~~~l~ipG~~~~--gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~ 312 (471)
T PRK12810 236 TGA-YKPRDLGIPGRDLD--GVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRD 312 (471)
T ss_pred cCC-CCCCcCCCCCccCC--CcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcc
Confidence 994 23677778876531 11111000 11123468999999999999999998888875 788666
Q ss_pred ecCC---cc-------------ccccCCCCC-CeEEecceeEEec-CCcE---EEc-----c-------C--cEEecCEE
Q 018550 228 RSVA---DE-------------THEKQPGYD-NMWLHSMVERANE-DGTV---VFR-----N-------G--RVVSADVI 272 (354)
Q Consensus 228 r~~~---~~-------------~~~~l~~~~-~~~~~~~v~~v~~-~~~v---~~~-----~-------g--~~~~~D~v 272 (354)
+... +. ....+.+.+ ++++...++++.. +++| .+. + + .++++|.|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~V 392 (471)
T PRK12810 313 IMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLV 392 (471)
T ss_pred ccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEE
Confidence 5442 11 122333444 8899999999874 4433 221 2 2 57899999
Q ss_pred EEcccCCCccCcc-cccCchhh-----------------hhceeeeecccchh
Q 018550 273 MHCTGLTGTSTTT-LFLKPMAL-----------------LLWMTIVLGHCTST 307 (354)
Q Consensus 273 i~a~G~~~~~p~~-~~l~~~~~-----------------~~~~i~a~GD~~~~ 307 (354)
|+|+|+. |+. .+++..+. ...+|||+||+...
T Consensus 393 I~A~G~~---p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g 442 (471)
T PRK12810 393 LLAMGFT---GPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRG 442 (471)
T ss_pred EECcCcC---CCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCC
Confidence 9999999 543 34433221 12459999999874
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=197.24 Aligned_cols=233 Identities=22% Similarity=0.312 Sum_probs=154.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||||+++|..|++.|++|++||+.+.+||.+.+. ++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g-----------------------------------ip 371 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG-----------------------------------IP 371 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec-----------------------------------CC
Confidence 4789999999999999999999999999999998899887651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. . .++.+...+.+.++|++ +++++.+.. + ++..+ ....||.|++|
T Consensus 372 ~~~l--~--------------~~~~~~~~~~~~~~Gv~--~~~~~~v~~------~---i~~~~-----~~~~~DavilA 419 (654)
T PRK12769 372 AFKL--D--------------KSLLARRREIFSAMGIE--FELNCEVGK------D---ISLES-----LLEDYDAVFVG 419 (654)
T ss_pred CccC--C--------------HHHHHHHHHHHHHCCeE--EECCCEeCC------c---CCHHH-----HHhcCCEEEEe
Confidence 1111 0 45566666777788888 888776521 0 11111 12479999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeec--------------ccCCCC--CCCCCCeEEEEccCCCHHHHHHHHhccCC-EEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHS--------------HNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAK-EVH 224 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~--------------~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~ 224 (354)
||++ .++.+.++|... .+ ++.. ....+. ....+++|+|||+|.+|+|+|..+.+.|. +|+
T Consensus 420 tGa~-~~~~l~i~g~~~-~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt 496 (654)
T PRK12769 420 VGTY-RSMKAGLPNEDA-PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVT 496 (654)
T ss_pred CCCC-CCCCCCCCCCCC-CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence 9962 344566666543 11 1100 000000 12367899999999999999999888885 799
Q ss_pred EEEecCC------ccccccCCCCC-CeEEecceeEEec--CCc---EEEc---------cC-----------cEEecCEE
Q 018550 225 IASRSVA------DETHEKQPGYD-NMWLHSMVERANE--DGT---VVFR---------NG-----------RVVSADVI 272 (354)
Q Consensus 225 ~~~r~~~------~~~~~~l~~~~-~~~~~~~v~~v~~--~~~---v~~~---------~g-----------~~~~~D~v 272 (354)
++++++. +..++.+.+.+ ++++.+.++++.. +++ |++. +| .++++|+|
T Consensus 497 ~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~V 576 (654)
T PRK12769 497 CAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAV 576 (654)
T ss_pred EeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEE
Confidence 9998753 12233344444 8888888888852 333 2321 12 26899999
Q ss_pred EEcccCCCccCcc-cccCchh--------------------hhhceeeeecccchh
Q 018550 273 MHCTGLTGTSTTT-LFLKPMA--------------------LLLWMTIVLGHCTST 307 (354)
Q Consensus 273 i~a~G~~~~~p~~-~~l~~~~--------------------~~~~~i~a~GD~~~~ 307 (354)
|+|+|+. |+. .+++..+ ....+|||+||++..
T Consensus 577 i~AiG~~---p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g 629 (654)
T PRK12769 577 IMAFGFN---PHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRG 629 (654)
T ss_pred EECccCC---CCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCC
Confidence 9999999 542 2332211 122459999999874
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=187.74 Aligned_cols=233 Identities=22% Similarity=0.292 Sum_probs=154.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||+|+++|..|++.|++|+++|+.+.+||.+.+. ++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g-----------------------------------ip 185 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG-----------------------------------IP 185 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec-----------------------------------Cc
Confidence 4789999999999999999999999999999998898877651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. . .++.++..+.+.++|++ +++++++..- +...+ ....||.||+|
T Consensus 186 ~~~~--~--------------~~~~~~~~~~~~~~Gv~--~~~~~~v~~~---------~~~~~-----~~~~~D~vilA 233 (467)
T TIGR01318 186 SFKL--D--------------KAVLSRRREIFTAMGIE--FHLNCEVGRD---------ISLDD-----LLEDYDAVFLG 233 (467)
T ss_pred cccC--C--------------HHHHHHHHHHHHHCCCE--EECCCEeCCc---------cCHHH-----HHhcCCEEEEE
Confidence 1111 0 55666777778888988 8888766220 11111 13479999999
Q ss_pred eCCCCCc-ccCCCCCCCCCCcceeecc-----------cC---CC--CCCCCCCeEEEEccCCCHHHHHHHHhccCC-EE
Q 018550 162 NGHFSVP-RLAQVPGIDSWPGKQMHSH-----------NY---RI--PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EV 223 (354)
Q Consensus 162 tG~~s~~-~~p~~~g~~~~~~~~~~~~-----------~~---~~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v 223 (354)
|| +.+ +.+.++|.+.. + +.+.. .. .. .....+++++|||+|.+|+|+|..+.+.|. +|
T Consensus 234 tG--a~~~~~~~i~g~~~~-g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~V 309 (467)
T TIGR01318 234 VG--TYRSMRGGLPGEDAP-G-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASV 309 (467)
T ss_pred eC--CCCCCcCCCCCcCCC-C-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeE
Confidence 99 444 34567775531 1 11100 00 00 012357999999999999999999999984 79
Q ss_pred EEEEecCC------ccccccCCCCC-CeEEecceeEEec--CCc---EEEc---------c---------C--cEEecCE
Q 018550 224 HIASRSVA------DETHEKQPGYD-NMWLHSMVERANE--DGT---VVFR---------N---------G--RVVSADV 271 (354)
Q Consensus 224 ~~~~r~~~------~~~~~~l~~~~-~~~~~~~v~~v~~--~~~---v~~~---------~---------g--~~~~~D~ 271 (354)
++++|++. +.....+.+.+ ++++++.+.++.. ++. |++. + | .++++|.
T Consensus 310 tvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~ 389 (467)
T TIGR01318 310 TCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADV 389 (467)
T ss_pred EEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCE
Confidence 99998763 22233343444 8888888888863 232 2221 1 1 3689999
Q ss_pred EEEcccCCCccCcccccCch--------------------hhhhceeeeecccchh
Q 018550 272 IMHCTGLTGTSTTTLFLKPM--------------------ALLLWMTIVLGHCTST 307 (354)
Q Consensus 272 vi~a~G~~~~~p~~~~l~~~--------------------~~~~~~i~a~GD~~~~ 307 (354)
||+|+|+.|+. ..++... .....+||++||++..
T Consensus 390 Vi~a~G~~p~~--~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~ 443 (467)
T TIGR01318 390 VIMAFGFQPHA--MPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRG 443 (467)
T ss_pred EEECCcCCCCc--cccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCC
Confidence 99999999431 1222211 0112459999999874
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-23 Score=188.89 Aligned_cols=277 Identities=19% Similarity=0.264 Sum_probs=201.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
+.+++|||-|++|..+..++.+. -+++++|-..+.+ .+ +...
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~----nY-----------------------~Ri~-------- 47 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP----NY-----------------------NRIL-------- 47 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc----cc-----------------------ccee--------
Confidence 47899999999999999999984 3689999876543 11 1000
Q ss_pred cccC-CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 79 GFQA-YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
++. ++-+ -+.+++.-...+++.+++++ ++.+.+|+.|++ ...+|+++.|. .+.||.
T Consensus 48 -Ls~vl~~~-------------~~~edi~l~~~dwy~~~~i~--L~~~~~v~~idr---~~k~V~t~~g~----~~~YDk 104 (793)
T COG1251 48 -LSSVLAGE-------------KTAEDISLNRNDWYEENGIT--LYTGEKVIQIDR---ANKVVTTDAGR----TVSYDK 104 (793)
T ss_pred -eccccCCC-------------ccHHHHhccchhhHHHcCcE--EEcCCeeEEecc---CcceEEccCCc----Eeecce
Confidence 000 0000 01156666677888999999 999999999998 44778888875 899999
Q ss_pred EEEeeCCCCCcccCCCCCCCCCCcceeecccCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~- 231 (354)
+|+||| |.|.++++||..... ++....+.+. .....++-+|||||..|+|+|..|...|-+++|++-++.
T Consensus 105 LilATG--S~pfi~PiPG~~~~~--v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l 180 (793)
T COG1251 105 LIIATG--SYPFILPIPGSDLPG--VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL 180 (793)
T ss_pred eEEecC--ccccccCCCCCCCCC--eeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchH
Confidence 999999 999999999987632 1211111110 011335579999999999999999999999999998875
Q ss_pred ----------ccccccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCCccCcccccCchhhh---
Q 018550 232 ----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL--- 294 (354)
Q Consensus 232 ----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~--- 294 (354)
..+..++++.+ +++++.+.+++...+. +.++||..+++|+|+||+|.+ ||+++....+..
T Consensus 181 MerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIr---Pn~ela~~aGlavnr 257 (793)
T COG1251 181 MERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIR---PNDELAKEAGLAVNR 257 (793)
T ss_pred HHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccc---cccHhHHhcCcCcCC
Confidence 22344556666 8999988888875443 888999999999999999999 998887655544
Q ss_pred -----------hceeeeecccch----------hhHHHHHHHhhhccCCCcccccCCCCCc---cccCCchhhh
Q 018550 295 -----------LWMTIVLGHCTS----------TFFRQSWHQAFHLLGYHRRLSLSPSLNS---RASGLPVFCL 344 (354)
Q Consensus 295 -----------~~~i~a~GD~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 344 (354)
..+|||+|+|+. +.+.|+...|.|+.+.... .|..+..+ .++|.-++..
T Consensus 258 GIvvnd~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~-~y~gsv~stkLKv~Gvdl~S~ 330 (793)
T COG1251 258 GIVVNDYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAE-AYEGSVTSTKLKVSGVDVFSA 330 (793)
T ss_pred CeeecccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCccc-ccccccchhhhcccccceeec
Confidence 345999999997 4688888889998776553 33333322 3366655544
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=192.63 Aligned_cols=234 Identities=24% Similarity=0.317 Sum_probs=150.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|++|+++|..|+++|++|+++|+.+.+||.+.+. ++
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~-----------------------------------i~ 327 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG-----------------------------------IP 327 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec-----------------------------------CC
Confidence 4689999999999999999999999999999998888877651 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. + .++.....+.+++++++ +++++.|.. + +...+ ....||+||+|
T Consensus 328 ~~~~--------------~--~~~~~~~~~~~~~~gv~--~~~~~~v~~-~--------~~~~~-----~~~~yD~vilA 375 (604)
T PRK13984 328 SYRL--------------P--DEALDKDIAFIEALGVK--IHLNTRVGK-D--------IPLEE-----LREKHDAVFLS 375 (604)
T ss_pred cccC--------------C--HHHHHHHHHHHHHCCcE--EECCCEeCC-c--------CCHHH-----HHhcCCEEEEE
Confidence 0000 0 44555556677778888 888877632 0 11111 13579999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCC---------CC-CCCCCCeEEEEccCCCHHHHHHHHhccCC------EEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR---------IP-NPFQDQVVILIGHYASGLDIKRDLAGFAK------EVHI 225 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~---------~~-~~~~~~~v~ViG~G~~g~e~a~~l~~~g~------~v~~ 225 (354)
||+ ..++.++++|.+.. .++....+. .. ....+++++|||||.+|+|+|..+++.+. +|++
T Consensus 376 tGa-~~~r~l~i~G~~~~--gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v 452 (604)
T PRK13984 376 TGF-TLGRSTRIPGTDHP--DVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKV 452 (604)
T ss_pred cCc-CCCccCCCCCcCCc--CeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEE
Confidence 994 23677788886531 111111110 00 11246899999999999999999988753 6888
Q ss_pred EEec-CC------ccccccCCCCC-CeEEecceeEEec-CCc---EEEc-------------------cCcEEecCEEEE
Q 018550 226 ASRS-VA------DETHEKQPGYD-NMWLHSMVERANE-DGT---VVFR-------------------NGRVVSADVIMH 274 (354)
Q Consensus 226 ~~r~-~~------~~~~~~l~~~~-~~~~~~~v~~v~~-~~~---v~~~-------------------~g~~~~~D~vi~ 274 (354)
+... .. ......+.+.+ +++.+..+.++.. ++. |.+. ++.++++|+||+
T Consensus 453 ~~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~ 532 (604)
T PRK13984 453 TSLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVE 532 (604)
T ss_pred eccccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEE
Confidence 7432 11 11111122233 7777777766652 222 2221 124689999999
Q ss_pred cccCCCccCcccccCch-h--h---------------hhceeeeecccchhh
Q 018550 275 CTGLTGTSTTTLFLKPM-A--L---------------LLWMTIVLGHCTSTF 308 (354)
Q Consensus 275 a~G~~~~~p~~~~l~~~-~--~---------------~~~~i~a~GD~~~~~ 308 (354)
|+|+. |+++++... . . ...+|||+||++...
T Consensus 533 aiG~~---p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~ 581 (604)
T PRK13984 533 AIGQA---PDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGP 581 (604)
T ss_pred eeCCC---CChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCch
Confidence 99999 766665321 0 0 123599999999743
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=190.03 Aligned_cols=234 Identities=21% Similarity=0.299 Sum_probs=153.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||+|+++|..|++.|++|++||+.+.+||.+.+. +.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------ip-------------------------- 354 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------IP-------------------------- 354 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------CC--------------------------
Confidence 4789999999999999999999999999999999999888761 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.+ + .++.+...+.+..+|++ +++++++.. .++..+ ....||.|++|
T Consensus 355 ~~~l--------------~--~~~~~~~~~~~~~~Gv~--~~~~~~v~~---------~~~~~~-----l~~~~DaV~la 402 (639)
T PRK12809 355 PFKL--------------D--KTVLSQRREIFTAMGID--FHLNCEIGR---------DITFSD-----LTSEYDAVFIG 402 (639)
T ss_pred cccC--------------C--HHHHHHHHHHHHHCCeE--EEcCCccCC---------cCCHHH-----HHhcCCEEEEe
Confidence 1111 1 45556666777888988 888776521 011111 13478999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeec-----------ccCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhccC-CEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHS-----------HNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVH 224 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~-----------~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~v~ 224 (354)
||++ .++.+.++|.+. .+. +.. ..... .....+++++|||+|.+|+|+|..+.+.| ++|+
T Consensus 403 tGa~-~~~~~~i~g~~~-~gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt 479 (639)
T PRK12809 403 VGTY-GMMRADLPHEDA-PGV-IQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVT 479 (639)
T ss_pred CCCC-CCCCCCCCCCcc-CCc-EeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence 9963 344556666543 111 110 00000 11236799999999999999999988888 4799
Q ss_pred EEEecCCc------cccccCCCCC-CeEEecceeEEec--CCcE---EE---c------cC-----------cEEecCEE
Q 018550 225 IASRSVAD------ETHEKQPGYD-NMWLHSMVERANE--DGTV---VF---R------NG-----------RVVSADVI 272 (354)
Q Consensus 225 ~~~r~~~~------~~~~~l~~~~-~~~~~~~v~~v~~--~~~v---~~---~------~g-----------~~~~~D~v 272 (354)
+++|++.. .....+.+.+ ++++.+.++++.. +++| .+ . +| .++++|+|
T Consensus 480 ~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~V 559 (639)
T PRK12809 480 CAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVL 559 (639)
T ss_pred EeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEE
Confidence 99987531 1122223344 8888888888863 3332 11 1 12 36899999
Q ss_pred EEcccCCCccCcccccCchh--------------------hhhceeeeecccchh
Q 018550 273 MHCTGLTGTSTTTLFLKPMA--------------------LLLWMTIVLGHCTST 307 (354)
Q Consensus 273 i~a~G~~~~~p~~~~l~~~~--------------------~~~~~i~a~GD~~~~ 307 (354)
|+|+|+.++. ..++...+ ....+|||+||+...
T Consensus 560 i~AiG~~p~~--~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g 612 (639)
T PRK12809 560 IMAFGFQAHA--MPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHG 612 (639)
T ss_pred EECcCCCCCc--cccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCC
Confidence 9999999421 12332211 112459999999874
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=185.22 Aligned_cols=201 Identities=20% Similarity=0.277 Sum_probs=140.4
Q ss_pred HHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE--eCEEEEeeCCCCCcccCCCCCCCCCCcceeecc
Q 018550 110 QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET--FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSH 187 (354)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~--~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~ 187 (354)
.+++.+++++ ++.+++|++++..+ +.+.+....+ + ..+. ||+||+||| +.|+.|.++|.+.. ..+...
T Consensus 51 ~~~~~~~gv~--~~~~~~V~~id~~~-~~v~~~~~~~-~--~~~~~~yd~lIiATG--~~p~~~~i~G~~~~--~v~~~~ 120 (427)
T TIGR03385 51 EVFIKKRGID--VKTNHEVIEVNDER-QTVVVRNNKT-N--ETYEESYDYLILSPG--ASPIVPNIEGINLD--IVFTLR 120 (427)
T ss_pred HHHHHhcCCe--EEecCEEEEEECCC-CEEEEEECCC-C--CEEecCCCEEEECCC--CCCCCCCCCCcCCC--CEEEEC
Confidence 4455777888 88889999998754 4444433211 1 2566 999999999 78898888886521 122221
Q ss_pred cCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc-----------cccccCCCCC-CeEEec
Q 018550 188 NYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-----------ETHEKQPGYD-NMWLHS 248 (354)
Q Consensus 188 ~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-----------~~~~~l~~~~-~~~~~~ 248 (354)
...+. ....+++++|||+|++|+|+|..|++.|.+|+++.+.+.. ...+.+++.+ +++.++
T Consensus 121 ~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~ 200 (427)
T TIGR03385 121 NLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNE 200 (427)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCC
Confidence 11100 1135689999999999999999999999999999987631 1122334444 888999
Q ss_pred ceeEEecCCc-EEEccCcEEecCEEEEcccCCCccCcccccCchhhh----------------hceeeeecccchh----
Q 018550 249 MVERANEDGT-VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL----------------LWMTIVLGHCTST---- 307 (354)
Q Consensus 249 ~v~~v~~~~~-v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~----------------~~~i~a~GD~~~~---- 307 (354)
.|+++..++. +++.+|+++++|.+|+|+|++ |+++++...+.. ..+|||+|||+..
T Consensus 201 ~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~---p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~ 277 (427)
T TIGR03385 201 EVDSIEGEERVKVFTSGGVYQADMVILATGIK---PNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNII 277 (427)
T ss_pred EEEEEecCCCEEEEcCCCEEEeCEEEECCCcc---CCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeecc
Confidence 9999987665 367788899999999999999 777666543221 2349999999852
Q ss_pred ------------hHHHHHHHhhhccCCC
Q 018550 308 ------------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 308 ------------~~~~~~~~~~~~~~~~ 323 (354)
...|+...|.++.+..
T Consensus 278 ~~~~~~~~~~~~A~~~g~~~a~ni~g~~ 305 (427)
T TIGR03385 278 TKKPAWVPLAWGANKMGRIAGENIAGND 305 (427)
T ss_pred CCCceeeechHHHHHHHHHHHHHhcCCC
Confidence 2345566677776653
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-22 Score=171.75 Aligned_cols=251 Identities=14% Similarity=0.151 Sum_probs=165.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|||+|+|.+|++++..|-...++|+++++++.+--++..+ ....+-.
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLp------------------------------S~~vGTv 104 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLP------------------------------STTVGTV 104 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccC------------------------------Cccccce
Confidence 5789999999999999999999999999999876553333321 1111100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee--cCCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK--KDDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~--g~~~~~~~~~d~vI 159 (354)
+ ...+.+-.+....+..... -.++.+..+|+.+. +........ +...+..+.||++|
T Consensus 105 e-------------------~rSIvEPIr~i~r~k~~~~-~y~eAec~~iDp~~-k~V~~~s~t~~~~~~e~~i~YDyLV 163 (491)
T KOG2495|consen 105 E-------------------LRSIVEPIRAIARKKNGEV-KYLEAECTKIDPDN-KKVHCRSLTADSSDKEFVIGYDYLV 163 (491)
T ss_pred e-------------------ehhhhhhHHHHhhccCCCc-eEEecccEeecccc-cEEEEeeeccCCCcceeeecccEEE
Confidence 0 1566677777666543231 34567778888765 444433322 22345789999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcc---eee----------cc---cC---CCCCCCCCCeEEEEccCCCHHHHHHHHhcc-
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGK---QMH----------SH---NY---RIPNPFQDQVVILIGHYASGLDIKRDLAGF- 219 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~---~~~----------~~---~~---~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~- 219 (354)
+|+| +.+..+.+||..++... +-+ +. .. .+++..+-.+++|||||++|+|+|.+|+..
T Consensus 164 iA~G--A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi 241 (491)
T KOG2495|consen 164 IAVG--AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFI 241 (491)
T ss_pred Eecc--CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHH
Confidence 9999 88999999987763110 000 00 00 111112335699999999999999999752
Q ss_pred -------------CCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCcEEEccC----cEEecCE
Q 018550 220 -------------AKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNG----RVVSADV 271 (354)
Q Consensus 220 -------------g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g----~~~~~D~ 271 (354)
--+||++...+. +-+.+++.+.+ .+..++.|+.+.++. ++.+.+ ++||+-+
T Consensus 242 ~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~-I~~~~~~g~~~~iPYG~ 320 (491)
T KOG2495|consen 242 PEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT-IHAKTKDGEIEEIPYGL 320 (491)
T ss_pred HHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcE-EEEEcCCCceeeecceE
Confidence 236899988874 22333444444 888899999998776 665544 7899999
Q ss_pred EEEcccCCCccCcccccCchhhhh---------------ceeeeecccch
Q 018550 272 IMHCTGLTGTSTTTLFLKPMALLL---------------WMTIVLGHCTS 306 (354)
Q Consensus 272 vi~a~G~~~~~p~~~~l~~~~~~~---------------~~i~a~GD~~~ 306 (354)
++|+||..+.---..|..+....+ .+|||+|||+.
T Consensus 321 lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~ 370 (491)
T KOG2495|consen 321 LVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCAD 370 (491)
T ss_pred EEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccc
Confidence 999999985522233443333222 23999999993
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=177.78 Aligned_cols=233 Identities=24% Similarity=0.376 Sum_probs=148.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|++|+++|..|++.|++|++||+.+.+||.+.+. ++.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g-----------------------------------ip~ 188 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG-----------------------------------IPN 188 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc-----------------------------------CCC
Confidence 689999999999999999999999999999988888777651 001
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+.. ..++.....+.+.+.|++ +++++.+.. + +.. +. ....||.|++||
T Consensus 189 ~~~----------------~~~~~~~~~~~~~~~Gv~--~~~~~~v~~-~--------~~~-~~----~~~~~d~VilAt 236 (485)
T TIGR01317 189 MKL----------------DKAIVDRRIDLLSAEGID--FVTNTEIGV-D--------ISA-DE----LKEQFDAVVLAG 236 (485)
T ss_pred ccC----------------CHHHHHHHHHHHHhCCCE--EECCCEeCC-c--------cCH-HH----HHhhCCEEEEcc
Confidence 110 034555555667778888 888777631 1 100 11 135799999999
Q ss_pred CCCCCcccCCCCCCCCCCcceeeccc--------CC-------CCCCCCCCeEEEEccCCCHHHHHHHHhccC-CEEEEE
Q 018550 163 GHFSVPRLAQVPGIDSWPGKQMHSHN--------YR-------IPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIA 226 (354)
Q Consensus 163 G~~s~~~~p~~~g~~~~~~~~~~~~~--------~~-------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~v~~~ 226 (354)
|++ .++.++++|.+. . .+..... .. ......+++|+|||+|.+|+|+|..+.+.+ +.|+++
T Consensus 237 Ga~-~~~~l~i~G~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv 313 (485)
T TIGR01317 237 GAT-KPRDLPIPGREL-K-GIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQF 313 (485)
T ss_pred CCC-CCCcCCCCCcCC-C-CcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 942 378888888653 1 1111100 00 011246799999999999999988887776 579999
Q ss_pred EecCCcc-------c-------------cccCC-CCC--CeEEecceeEEecC--Cc---EEE--------ccC------
Q 018550 227 SRSVADE-------T-------------HEKQP-GYD--NMWLHSMVERANED--GT---VVF--------RNG------ 264 (354)
Q Consensus 227 ~r~~~~~-------~-------------~~~l~-~~~--~~~~~~~v~~v~~~--~~---v~~--------~~g------ 264 (354)
.+.+... . .++.. ..+ .+++.+.+.++..+ +. +.+ ++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~ 393 (485)
T TIGR01317 314 EIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVE 393 (485)
T ss_pred EecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCcccee
Confidence 8765310 0 01111 112 33456667776543 22 221 123
Q ss_pred -----cEEecCEEEEcccCCCccCcccccCchhhh-----------------hceeeeecccchh
Q 018550 265 -----RVVSADVIMHCTGLTGTSTTTLFLKPMALL-----------------LWMTIVLGHCTST 307 (354)
Q Consensus 265 -----~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~-----------------~~~i~a~GD~~~~ 307 (354)
.++++|+||+|+|+.+ |++++++..+.. ..+|||+||++..
T Consensus 394 ~~g~~~~i~~D~Vi~AiG~~~--p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g 456 (485)
T TIGR01317 394 IPGSEEVFEADLVLLAMGFVG--PEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRG 456 (485)
T ss_pred cCCceEEEECCEEEEccCcCC--CccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCC
Confidence 3689999999999851 444454433221 1349999999863
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=178.16 Aligned_cols=161 Identities=22% Similarity=0.267 Sum_probs=109.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHH--cCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+||||||||+++|..|++ .|++|+|||+.+.+||.+++. ..|
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~g---------vaP----------------------- 73 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSG---------VAP----------------------- 73 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeec---------cCC-----------------------
Confidence 5789999999999999999987 799999999999999888762 110
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
.++....+...+.+.+...+++ ++.+.++- ..++..+- ...||.||
T Consensus 74 ------------------~~~~~k~v~~~~~~~~~~~~v~--~~~nv~vg---------~dvtl~~L-----~~~yDaVI 119 (491)
T PLN02852 74 ------------------DHPETKNVTNQFSRVATDDRVS--FFGNVTLG---------RDVSLSEL-----RDLYHVVV 119 (491)
T ss_pred ------------------CcchhHHHHHHHHHHHHHCCeE--EEcCEEEC---------ccccHHHH-----hhhCCEEE
Confidence 0111144556666666666666 66655441 11222221 34799999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccC----------CC--CCCCCCCeEEEEccCCCHHHHHHHHhcc--------
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNY----------RI--PNPFQDQVVILIGHYASGLDIKRDLAGF-------- 219 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~----------~~--~~~~~~~~v~ViG~G~~g~e~a~~l~~~-------- 219 (354)
+|||++ .++.+.++|.+.. .++....+ .. .....+++++|||+|.+|+|+|..|.+.
T Consensus 120 lAtGa~-~~~~l~IpG~d~~--gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~td 196 (491)
T PLN02852 120 LAYGAE-SDRRLGIPGEDLP--GVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTD 196 (491)
T ss_pred EecCCC-CCCCCCCCCCCCC--CeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCcccccccc
Confidence 999942 2467778886531 11211111 00 1123579999999999999999998764
Q ss_pred ------------C-CEEEEEEecCC
Q 018550 220 ------------A-KEVHIASRSVA 231 (354)
Q Consensus 220 ------------g-~~v~~~~r~~~ 231 (354)
+ .+|+++.|+.+
T Consensus 197 i~~~~l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 197 IAEHALEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred ccHHHHHHHhhCCCCEEEEEEcCCh
Confidence 4 56999999885
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=182.39 Aligned_cols=231 Identities=27% Similarity=0.374 Sum_probs=151.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||+|+++|..|++.|++|+++|+.+.+||.+.+. ++
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip 181 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG-----------------------------------IP 181 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec-----------------------------------CC
Confidence 3689999999999999999999999999999999998877651 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEE-EEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEV-LNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v-~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
.+.. + .++.+...+.+.++|++ +.+++.+ .++.... ....||+||+
T Consensus 182 ~~~~--------------~--~~~~~~~l~~~~~~Gv~--~~~~~~~~~~~~~~~---------------~~~~~D~Vi~ 228 (564)
T PRK12771 182 AYRL--------------P--REVLDAEIQRILDLGVE--VRLGVRVGEDITLEQ---------------LEGEFDAVFV 228 (564)
T ss_pred CccC--------------C--HHHHHHHHHHHHHCCCE--EEeCCEECCcCCHHH---------------HHhhCCEEEE
Confidence 1111 1 44455555666778887 7777655 3321110 0225899999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccC-----CCCCCCCCCeEEEEccCCCHHHHHHHHhccC-CEEEEEEecCCcc-
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNY-----RIPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSVADE- 233 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~~~~- 233 (354)
|+|++ .+..+.+++... .+ ......+ .......+++++|||+|.+|+|.+..+.+.+ ++|+++.|.+.+.
T Consensus 229 AtG~~-~~~~~~i~g~~~-~g-v~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~ 305 (564)
T PRK12771 229 AIGAQ-LGKRLPIPGEDA-AG-VLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDM 305 (564)
T ss_pred eeCCC-CCCcCCCCCCcc-CC-cEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccC
Confidence 99953 233445666432 11 1111111 1112345789999999999999999888888 6799999876421
Q ss_pred -----ccccCC-CCCCeEEecceeEEecCC-c---E---EE------c-------cC--cEEecCEEEEcccCCCccCcc
Q 018550 234 -----THEKQP-GYDNMWLHSMVERANEDG-T---V---VF------R-------NG--RVVSADVIMHCTGLTGTSTTT 285 (354)
Q Consensus 234 -----~~~~l~-~~~~~~~~~~v~~v~~~~-~---v---~~------~-------~g--~~~~~D~vi~a~G~~~~~p~~ 285 (354)
.+..+. ...++++...+.++..++ . + .+ . +| .++++|+||+|+|+. |+.
T Consensus 306 ~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~---p~~ 382 (564)
T PRK12771 306 PAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD---IDS 382 (564)
T ss_pred CCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC---Cch
Confidence 122222 334888888888886432 1 1 11 1 12 478999999999999 666
Q ss_pred cccCc-hhh----------------hhceeeeecccch
Q 018550 286 LFLKP-MAL----------------LLWMTIVLGHCTS 306 (354)
Q Consensus 286 ~~l~~-~~~----------------~~~~i~a~GD~~~ 306 (354)
+++.+ .+. ...+||++||+..
T Consensus 383 ~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~ 420 (564)
T PRK12771 383 AGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVP 420 (564)
T ss_pred hhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCC
Confidence 66543 111 1245999999986
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=155.17 Aligned_cols=268 Identities=19% Similarity=0.161 Sum_probs=177.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
..|++.||-||+-+++|..|.+++ .+...+||.+. -.|+.. .+.|...+..+++-+......|...+.|
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~--F~WHpG--------mllegstlQv~FlkDLVTl~~PTs~ySF 74 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD--FSWHPG--------MLLEGSTLQVPFLKDLVTLVDPTSPYSF 74 (436)
T ss_pred ceeeEEEccCchHHHHHHHhccccCcceEEEecCCC--CCcCCC--------cccCCccccccchhhhccccCCCCchHH
Confidence 368999999999999999999986 68999999654 355542 3333333444444444445555555555
Q ss_pred cCCCCCccCCC-CCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEE--EEEeecCCceEEEEeC
Q 018550 81 QAYPFVARNYE-GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWK--VKSRKKDDVVEEETFD 156 (354)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~--v~~~~g~~~~~~~~~d 156 (354)
.++-....++- +......++.|.++.+|+++.+..+ -. ++++++|++|...+. .... +.+.+++ .+.+.
T Consensus 75 LNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~--~rfg~~V~~i~~~~~d~~~~~~~~t~~~~----~y~ar 147 (436)
T COG3486 75 LNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL-PS--LRFGEEVTDISSLDGDAVVRLFVVTANGT----VYRAR 147 (436)
T ss_pred HHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhC-Cc--cccCCeeccccccCCcceeEEEEEcCCCc----EEEee
Confidence 44433333222 2223456689999999999999998 44 899999997744321 2333 3333333 89999
Q ss_pred EEEEeeCCCCCcccCCC-CCCCCCCcceeecccCCCC--CCCCCCeEEEEccCCCHHHHHHHHhcc----CCEEEEEEec
Q 018550 157 AVVVCNGHFSVPRLAQV-PGIDSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGF----AKEVHIASRS 229 (354)
Q Consensus 157 ~vIlAtG~~s~~~~p~~-~g~~~~~~~~~~~~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~----g~~v~~~~r~ 229 (354)
.||+++| .+|.+|+. ..+.. .+++|+.++... +....++|.|||+|.+|+|+...|... ..++.|++|+
T Consensus 148 ~lVlg~G--~~P~IP~~f~~l~~--~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~ 223 (436)
T COG3486 148 NLVLGVG--TQPYIPPCFRSLIG--ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRS 223 (436)
T ss_pred eEEEccC--CCcCCChHHhCcCc--cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeecc
Confidence 9999999 89999862 22221 367787776432 222334599999999999999998643 3469999998
Q ss_pred CC------------------------------c-------------------c----ccc-cCC---CCCCeEEecceeE
Q 018550 230 VA------------------------------D-------------------E----THE-KQP---GYDNMWLHSMVER 252 (354)
Q Consensus 230 ~~------------------------------~-------------------~----~~~-~l~---~~~~~~~~~~v~~ 252 (354)
.. + + .++ ++. ....++..+.|+.
T Consensus 224 ~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~ 303 (436)
T COG3486 224 SGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQS 303 (436)
T ss_pred CCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceee
Confidence 84 0 0 000 111 1125678889999
Q ss_pred EecCC--c--EEEcc---C--cEEecCEEEEcccCCCccCcccccCchh
Q 018550 253 ANEDG--T--VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMA 292 (354)
Q Consensus 253 v~~~~--~--v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~ 292 (354)
++..| . +.+.+ + .+++.|.||+|||++...| .|+.++.
T Consensus 304 ~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P--~fL~~l~ 350 (436)
T COG3486 304 VEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVP--SFLEGLA 350 (436)
T ss_pred eecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCc--hhhhhHH
Confidence 98554 2 33322 2 5788999999999996656 3554444
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=165.83 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=33.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg 39 (354)
.++|+|||+||||+++|+.|++.|++|+++|+.+..|+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 47999999999999999999999999999998654433
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=155.71 Aligned_cols=156 Identities=29% Similarity=0.390 Sum_probs=110.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||||++||-+|.+.|+.|+++||.+.+||.+.+. ++
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg-----------------------------------ip 1829 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG-----------------------------------IP 1829 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec-----------------------------------CC
Confidence 4789999999999999999999999999999999999999872 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+..+ ..+.+...+...+.|++ +..|+++- +. +. -++ ..-..|.||+|
T Consensus 1830 nmkld----------------k~vv~rrv~ll~~egi~--f~tn~eig--------k~-vs-~d~----l~~~~daiv~a 1877 (2142)
T KOG0399|consen 1830 NMKLD----------------KFVVQRRVDLLEQEGIR--FVTNTEIG--------KH-VS-LDE----LKKENDAIVLA 1877 (2142)
T ss_pred ccchh----------------HHHHHHHHHHHHhhCce--EEeecccc--------cc-cc-HHH----HhhccCeEEEE
Confidence 11110 34566667777778988 88777662 21 11 121 23478999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeec-ccC--------C----CC--CCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHS-HNY--------R----IP--NPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHI 225 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~-~~~--------~----~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~ 225 (354)
+|+ ..|+.++++|-+. +.++. .++ . +. ...++|+|+|||||.+|-++...-.++|. +|--
T Consensus 1878 ~gs-t~prdlpv~grd~---kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n 1953 (2142)
T KOG0399|consen 1878 TGS-TTPRDLPVPGRDL---KGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGN 1953 (2142)
T ss_pred eCC-CCCcCCCCCCccc---cccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecc
Confidence 996 6788888888553 11110 000 0 00 12378999999999999999988888875 3544
Q ss_pred EEe
Q 018550 226 ASR 228 (354)
Q Consensus 226 ~~r 228 (354)
+.-
T Consensus 1954 ~el 1956 (2142)
T KOG0399|consen 1954 FEL 1956 (2142)
T ss_pred eee
Confidence 443
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-17 Score=140.15 Aligned_cols=158 Identities=18% Similarity=0.310 Sum_probs=116.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCC-CCCCCCCCc--cc---ccccccchhccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-LGVDPNRYP--VH---SSLYKSLRVNLP 74 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~-~~~~~~~~~--~~---~~~~~~~~~~~~ 74 (354)
+.++|+||||||||++||..++++|.+|+|||+.+.+|..+...++...+- +.+.|...+ +. .+.+..+....+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 358999999999999999999999999999999999987776655443111 111111110 11 344555555556
Q ss_pred ccccccc---CCCCCccCCCCCCCCCCCCC---HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 75 RELMGFQ---AYPFVARNYEGSVDLRRYPG---HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 75 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
++.+.+. +..+. .+.+.+.||. ...+.+.+...+++.|++ ++++++|.+++.++ ..+.+.+.++.
T Consensus 82 ~d~i~~~e~~Gi~~~-----e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~--i~~~~~v~~v~~~~-~~f~l~t~~g~- 152 (408)
T COG2081 82 EDFIDWVEGLGIALK-----EEDLGRMFPDSDKASPIVDALLKELEALGVT--IRTRSRVSSVEKDD-SGFRLDTSSGE- 152 (408)
T ss_pred HHHHHHHHhcCCeeE-----EccCceecCCccchHHHHHHHHHHHHHcCcE--EEecceEEeEEecC-ceEEEEcCCCC-
Confidence 5555542 22222 2356777876 367888888888899999 99999999999987 78999999985
Q ss_pred ceEEEEeCEEEEeeCCCCCccc
Q 018550 149 VVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.||.+|+|||..|.|++
T Consensus 153 ---~i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 153 ---TVKCDSLILATGGKSWPKL 171 (408)
T ss_pred ---EEEccEEEEecCCcCCCCC
Confidence 8999999999998777754
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-17 Score=147.44 Aligned_cols=158 Identities=26% Similarity=0.422 Sum_probs=114.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+||||+++|..|++.|+.|+++|+.+..||.+.+. ++
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG-----------------------------------IP 167 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG-----------------------------------IP 167 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec-----------------------------------Cc
Confidence 3689999999999999999999999999999999999999872 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
++..+ .++.+...+.+.+.|++ ++.++++-. .++.++ ..-.+|+|++|
T Consensus 168 ~~kl~----------------k~i~d~~i~~l~~~Gv~--~~~~~~vG~---------~it~~~-----L~~e~Dav~l~ 215 (457)
T COG0493 168 DFKLP----------------KDILDRRLELLERSGVE--FKLNVRVGR---------DITLEE-----LLKEYDAVFLA 215 (457)
T ss_pred hhhcc----------------chHHHHHHHHHHHcCeE--EEEcceECC---------cCCHHH-----HHHhhCEEEEe
Confidence 22111 67888888899998977 888877731 122222 12355999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeeccc------------CC--CCCCCCCCeEEEEccCCCHHHHHHHHhccCC-EEEEE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHN------------YR--IPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIA 226 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~------------~~--~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~ 226 (354)
+|. ..|+..+++|.+.- .+....+ +. ......+++++|||+|.+++|++....+.|+ +|+.+
T Consensus 216 ~G~-~~~~~l~i~g~d~~--gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~ 292 (457)
T COG0493 216 TGA-GKPRPLDIPGEDAK--GVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCF 292 (457)
T ss_pred ccc-cCCCCCCCCCcCCC--cchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEe
Confidence 997 68888888887531 1111000 10 1112245999999999999999999888886 68888
Q ss_pred Eec
Q 018550 227 SRS 229 (354)
Q Consensus 227 ~r~ 229 (354)
.+.
T Consensus 293 ~~~ 295 (457)
T COG0493 293 YRE 295 (457)
T ss_pred ccc
Confidence 643
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-16 Score=143.43 Aligned_cols=175 Identities=21% Similarity=0.192 Sum_probs=122.2
Q ss_pred HHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCC
Q 018550 114 REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN 193 (354)
Q Consensus 114 ~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~ 193 (354)
.+.++. +..+++|.+++.. ...+.+.++ ++.||++++||| +.++.++ +... ..........+..
T Consensus 64 ~~~~i~--~~~~~~v~~id~~---~~~v~~~~g-----~~~yd~LvlatG--a~~~~~~--~~~~--~~~~~~~~~~~~~ 127 (415)
T COG0446 64 RATGID--VRTGTEVTSIDPE---NKVVLLDDG-----EIEYDYLVLATG--ARPRPPP--ISDW--EGVVTLRLREDAE 127 (415)
T ss_pred HhhCCE--EeeCCEEEEecCC---CCEEEECCC-----cccccEEEEcCC--CcccCCC--cccc--CceEEECCHHHHH
Confidence 345676 8888999999874 356666665 689999999999 7777765 1111 1112211111111
Q ss_pred -----CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--ccc---------cccCCCCC-CeEEecceeEEecC
Q 018550 194 -----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--DET---------HEKQPGYD-NMWLHSMVERANED 256 (354)
Q Consensus 194 -----~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--~~~---------~~~l~~~~-~~~~~~~v~~v~~~ 256 (354)
....++++|||+|++|+++|..++++|.+|+++...+. ... .+.+++.+ +++.+..+.++..+
T Consensus 128 ~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~ 207 (415)
T COG0446 128 ALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGK 207 (415)
T ss_pred HHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcc
Confidence 11247899999999999999999999999999999875 111 12224444 78899999999865
Q ss_pred Cc------EEEccCcEEecCEEEEcccCCCccCcccccCchh--hh----------------hceeeeecccchh
Q 018550 257 GT------VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMA--LL----------------LWMTIVLGHCTST 307 (354)
Q Consensus 257 ~~------v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~--~~----------------~~~i~a~GD~~~~ 307 (354)
.. +...++..+++|++++++|.+ ||+.+..... .. ..+||++|||...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~---p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~ 279 (415)
T COG0446 208 GNTLVVERVVGIDGEEIKADLVIIGPGER---PNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEI 279 (415)
T ss_pred cCcceeeEEEEeCCcEEEeeEEEEeeccc---ccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEee
Confidence 43 366777899999999999999 6665554432 11 1349999998773
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-15 Score=137.33 Aligned_cols=210 Identities=17% Similarity=0.261 Sum_probs=122.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCC----CCCCCCCCCCCcccccccccchhcccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETE----SDPLGVDPNRYPVHSSLYKSLRVNLPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (354)
+++|+|||||++|+++|..|.+.+ .+|+|||++..+|..+.+.+... +.+...... .......+..+......
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~-p~~~~~f~~Wl~~~~~~ 79 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEI-PPIYCTYLEWLQKQEDS 79 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhccccccc-CCChHHHHHHhhhhhHH
Confidence 468999999999999999998865 58999999888887766543211 111000000 00011111111110000
Q ss_pred ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------CCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
. +..+..... ......|+++..+.+|+++..+.+ |....++.+++|++++..+ +.|.+++.++.
T Consensus 80 -~--~~~~g~~~~----~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~~V~t~~gg- 150 (534)
T PRK09897 80 -H--LQRYGVKKE----TLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGVMLATNQDL- 150 (534)
T ss_pred -H--HHhcCCcce----eecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEEEEEECCCC-
Confidence 0 000010000 012346777777777777655432 3222366788999998877 77888875542
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCC--CCCCCCCCeEEEEccCCCHHHHHHHHhccC------
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR--IPNPFQDQVVILIGHYASGLDIKRDLAGFA------ 220 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~--~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g------ 220 (354)
..+.+|.||+|+|+ ..|..+ .+...| ....|. ......+.+|+|+|.|.+++|++..|...|
T Consensus 151 --~~i~aD~VVLAtGh-~~p~~~--~~~~~y-----i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~ 220 (534)
T PRK09897 151 --PSETFDLAVIATGH-VWPDEE--EATRTY-----FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIED 220 (534)
T ss_pred --eEEEcCEEEECCCC-CCCCCC--hhhccc-----cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceecc
Confidence 37899999999996 223222 111111 111111 111224689999999999999999987552
Q ss_pred ---------------CEEEEEEecCC
Q 018550 221 ---------------KEVHIASRSVA 231 (354)
Q Consensus 221 ---------------~~v~~~~r~~~ 231 (354)
.+|++++|+..
T Consensus 221 ~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 221 DKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred CCCcceeeecCCCCCceEEEEeCCCC
Confidence 26888888763
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=130.39 Aligned_cols=176 Identities=18% Similarity=0.163 Sum_probs=125.1
Q ss_pred CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCCC-CCCC-CCCcceeecc---cCCC
Q 018550 117 GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQV-PGID-SWPGKQMHSH---NYRI 191 (354)
Q Consensus 117 ~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~-~g~~-~~~~~~~~~~---~~~~ 191 (354)
|+. +..+.+|+.|...+ ..|++++|. ++.||.+++||| .+|+..+. .... +...++...+ ++..
T Consensus 271 GvA--vl~G~kvvkid~~d---~~V~LnDG~----~I~YdkcLIATG--~~Pk~l~~~~~A~~evk~kit~fr~p~DF~r 339 (659)
T KOG1346|consen 271 GVA--VLRGRKVVKIDEED---KKVILNDGT----TIGYDKCLIATG--VRPKKLQVFEEASEEVKQKITYFRYPADFKR 339 (659)
T ss_pred ceE--EEeccceEEeeccc---CeEEecCCc----EeehhheeeecC--cCcccchhhhhcCHHhhhheeEEecchHHHH
Confidence 565 77888899988644 457778876 999999999999 77876653 2222 1122222211 1111
Q ss_pred CC--CCCCCeEEEEccCCCHHHHHHHHhcc----CCEEEEEEecCC-----------ccccccCCCCC-CeEEecceeEE
Q 018550 192 PN--PFQDQVVILIGHYASGLDIKRDLAGF----AKEVHIASRSVA-----------DETHEKQPGYD-NMWLHSMVERA 253 (354)
Q Consensus 192 ~~--~~~~~~v~ViG~G~~g~e~a~~l~~~----g~~v~~~~r~~~-----------~~~~~~l~~~~-~~~~~~~v~~v 253 (354)
.+ ....++|.|||+|..|-|+|..|.+. |.+|+-+-.... .+.++++.+.+ .++.+..|+.+
T Consensus 340 lek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv 419 (659)
T KOG1346|consen 340 LEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESV 419 (659)
T ss_pred HHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhh
Confidence 00 11347899999999999999999764 556655544332 34556666666 89999999998
Q ss_pred ecCCc---EEEccCcEEecCEEEEcccCCCccCcccccCchhhhh----------------ceeeeecccch
Q 018550 254 NEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALLL----------------WMTIVLGHCTS 306 (354)
Q Consensus 254 ~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~~----------------~~i~a~GD~~~ 306 (354)
..+.. +.+.||.++..|+|+.|+|.. ||+++...++... .+||++||+..
T Consensus 420 ~~~~~nl~lkL~dG~~l~tD~vVvavG~e---PN~ela~~sgLeiD~~lGGfrvnaeL~ar~NvwvAGdaac 488 (659)
T KOG1346|consen 420 RKCCKNLVLKLSDGSELRTDLVVVAVGEE---PNSELAEASGLEIDEKLGGFRVNAELKARENVWVAGDAAC 488 (659)
T ss_pred hhhccceEEEecCCCeeeeeeEEEEecCC---CchhhcccccceeecccCcEEeeheeecccceeeecchhh
Confidence 75543 778999999999999999999 9999988777652 23999999876
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-14 Score=123.58 Aligned_cols=216 Identities=19% Similarity=0.281 Sum_probs=131.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC---CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g---~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
+++|+|||+|++|+.+|.+|.+.- ..+.|||+.+.+|....+....+....... .. ......-..|.+..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~-a~------~mS~~~pD~p~~F~ 73 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVP-AA------RMSAFAPDIPQDFV 73 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccc-cc------cccccCCCCchHHH
Confidence 478999999999999999999863 249999999999988888644331111100 00 00000011111111
Q ss_pred cccCCC---CCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh---CCcc-eEEeceEEEEEEEeCC-CcEEEEEeecCCce
Q 018550 79 GFQAYP---FVARNYEGSVDLRRYPGHEEVLRYLQNFAREF---GVDQ-VVRLHTEVLNARLVES-NKWKVKSRKKDDVV 150 (354)
Q Consensus 79 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~-~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~ 150 (354)
.|.... ... ......+...||++..+.+|+.+....+ +-.. .....++++++.+.++ +.|.++..+|+
T Consensus 74 ~WL~~~~~~~~d-~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~--- 149 (474)
T COG4529 74 RWLQKQLQRYRD-PEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGP--- 149 (474)
T ss_pred HHHHhcccccCC-hhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCC---
Confidence 111110 000 0011235678899999999999887655 1111 1344677788877632 67888888886
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCC---CCCCCCeEEEEccCCCHHHHHHHHhccCC--EEEE
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP---NPFQDQVVILIGHYASGLDIKRDLAGFAK--EVHI 225 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~---~~~~~~~v~ViG~G~~g~e~a~~l~~~g~--~v~~ 225 (354)
...||.+|+|||+ +.|..+. ..........+....+... ......+|+|+|+|.+.+|....|.++|. +||+
T Consensus 150 -~~~ad~~Vlatgh-~~~~~~~-~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~ 226 (474)
T COG4529 150 -SEIADIIVLATGH-SAPPADP-AARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITA 226 (474)
T ss_pred -eeeeeEEEEeccC-CCCCcch-hhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEE
Confidence 8899999999997 3333322 1111111111221112111 12245669999999999999999999874 5999
Q ss_pred EEecCC
Q 018550 226 ASRSVA 231 (354)
Q Consensus 226 ~~r~~~ 231 (354)
++|+..
T Consensus 227 iSRrGl 232 (474)
T COG4529 227 ISRRGL 232 (474)
T ss_pred Eecccc
Confidence 999874
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=127.67 Aligned_cols=42 Identities=33% Similarity=0.373 Sum_probs=38.4
Q ss_pred CCeEEEEcCChHHHHHHHHHH-HcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELL-REGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~-~~g~~v~lie~~~~~gg~~~~ 43 (354)
.++|+||||||||+.+|..|+ +.|++|+|||+.+.+||.+++
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 468999999999999999865 579999999999999999987
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-15 Score=134.11 Aligned_cols=156 Identities=26% Similarity=0.356 Sum_probs=84.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc--------ceeecCC-CCCCCCCCCCCCCCcccccccccchhcc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--------GSWIYTS-ETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g--------g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
|+|+||||||||++||..|++.|.+|+|+|+++.+| |.|+..+ ......+.. .......+....+....
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~--~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLS--GYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEEC--S-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhh--hcccchHHHHHHHhcCC
Confidence 689999999999999999999999999999999987 4444432 111000000 00000112222333333
Q ss_pred cccccccc-CCCCCccCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 74 PRELMGFQ-AYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 74 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
+.+...+. +...... .......|| ...++.+.+...+.+.+++ ++++++|.+|+..+++.+.|.++++
T Consensus 79 ~~d~~~ff~~~Gv~~~---~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~~f~v~~~~~--- 150 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTK---IEEDGRVFPKSDKASSVVDALLEELKRLGVE--IHFNTRVKSIEKKEDGVFGVKTKNG--- 150 (409)
T ss_dssp HHHHHHHHHHTT--EE---E-STTEEEETT--HHHHHHHHHHHHHHHT-E--EE-S--EEEEEEETTEEEEEEETTT---
T ss_pred HHHHHHHHHhcCCeEE---EcCCCEECCCCCcHHHHHHHHHHHHHHcCCE--EEeCCEeeeeeecCCceeEeeccCc---
Confidence 33333221 1211111 011233344 2367888888889999999 9999999999987734588888433
Q ss_pred eEEEEeCEEEEeeCCCCCcc
Q 018550 150 VEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~ 169 (354)
..+.+|.||+|||..+.|.
T Consensus 151 -~~~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 151 -GEYEADAVILATGGKSYPK 169 (409)
T ss_dssp -EEEEESEEEE----SSSGG
T ss_pred -ccccCCEEEEecCCCCccc
Confidence 4899999999999766554
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-14 Score=116.29 Aligned_cols=82 Identities=13% Similarity=0.312 Sum_probs=56.1
Q ss_pred CcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCC-----CCCCCCCCeEEEEccCCCHHH
Q 018550 137 NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLD 211 (354)
Q Consensus 137 ~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~v~ViG~G~~g~e 211 (354)
....+.+.+|. .+.|++|++|+| ++|.+.. ++.+. +++-..+.. .-...++|.|+|+|.|-+++|
T Consensus 79 ~ehci~t~~g~----~~ky~kKOG~tg--~kPklq~-E~~n~---~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~E 148 (334)
T KOG2755|consen 79 SEHCIHTQNGE----KLKYFKLCLCTG--YKPKLQV-EGINP---KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAME 148 (334)
T ss_pred ccceEEecCCc----eeeEEEEEEecC--CCcceee-cCCCc---eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHH
Confidence 55677788775 899999999999 7776543 22222 222211111 112236899999999999999
Q ss_pred HHHHHhccCCEEEEEEecC
Q 018550 212 IKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 212 ~a~~l~~~g~~v~~~~r~~ 230 (354)
.+.++... +|+|....+
T Consensus 149 l~yElk~~--nv~w~ikd~ 165 (334)
T KOG2755|consen 149 LTYELKIL--NVTWKIKDE 165 (334)
T ss_pred HHHHhhcc--eeEEEecch
Confidence 99999754 677777665
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-12 Score=113.49 Aligned_cols=42 Identities=36% Similarity=0.518 Sum_probs=39.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.++++|||||+||+.||+.|++.|++|.|+||++.+||.+..
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 478999999999999999999999999999999999999765
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.3e-12 Score=107.55 Aligned_cols=159 Identities=23% Similarity=0.375 Sum_probs=107.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.+|.|||+||||+.+|..|.++ ++.|.++|+.+.+.|..++. .-|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG---------VAPD----------------------- 68 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG---------VAPD----------------------- 68 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec---------cCCC-----------------------
Confidence 5899999999999999999984 58999999999888888872 1111
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEE-EEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEV-LNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v-~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
.| --..+...+.+.+++.... +..|.+| .++.. ++ .+-.||.||
T Consensus 69 --Hp----------------EvKnvintFt~~aE~~rfs--f~gNv~vG~dvsl----------~e-----L~~~ydavv 113 (468)
T KOG1800|consen 69 --HP----------------EVKNVINTFTKTAEHERFS--FFGNVKVGRDVSL----------KE-----LTDNYDAVV 113 (468)
T ss_pred --Cc----------------chhhHHHHHHHHhhccceE--EEecceecccccH----------HH-----HhhcccEEE
Confidence 00 0034445555666654444 5555554 33322 11 245899999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeeccc----CC-------CCCCCCCCeEEEEccCCCHHHHHHHHhcc---------
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHN----YR-------IPNPFQDQVVILIGHYASGLDIKRDLAGF--------- 219 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~----~~-------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~--------- 219 (354)
+|.|+ ..++.+++||.+. ..++.... |. ...+....+++|||.|.+|+|+|..|...
T Consensus 114 LaYGa-~~dR~L~IPGe~l--~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TD 190 (468)
T KOG1800|consen 114 LAYGA-DGDRRLDIPGEEL--SGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTD 190 (468)
T ss_pred EEecC-CCCcccCCCCccc--ccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccC
Confidence 99997 5788899999863 11111111 11 11233578999999999999999998531
Q ss_pred -------------CCEEEEEEecCC
Q 018550 220 -------------AKEVHIASRSVA 231 (354)
Q Consensus 220 -------------g~~v~~~~r~~~ 231 (354)
-++|+++.|+.+
T Consensus 191 i~~~aL~~L~~s~VkdV~lvgRRgp 215 (468)
T KOG1800|consen 191 IPKLALNLLKRSNVKDVKLVGRRGP 215 (468)
T ss_pred CcHHHHhhhhcCCcceEEEEeccCc
Confidence 136899999885
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-13 Score=111.29 Aligned_cols=149 Identities=24% Similarity=0.346 Sum_probs=87.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
||+|||||+||+++|..|++.+.+++++|+.+..+..... .+........
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~---------------------~~~~~~~~~~--------- 50 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC---------------------IPSPLLVEIA--------- 50 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH---------------------HHHHHHHHHH---------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc---------------------cccccccccc---------
Confidence 6999999999999999999999999999886532210000 0000000000
Q ss_pred CCCccCCCCCCCCCCCCCHHHHH--H--HHHHHHHHhCCcceEEeceEEEEEEEeCCCc-----EEEEEeecCCceEEEE
Q 018550 84 PFVARNYEGSVDLRRYPGHEEVL--R--YLQNFAREFGVDQVVRLHTEVLNARLVESNK-----WKVKSRKKDDVVEEET 154 (354)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~--~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-----~~v~~~~g~~~~~~~~ 154 (354)
. ....+. + .+.+.+...+++ +.++.++.+++... +. +.+.... .+...++.
T Consensus 51 ---~-------------~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 110 (201)
T PF07992_consen 51 ---P-------------HRHEFLPARLFKLVDQLKNRGVE--IRLNAKVVSIDPES-KRVVCPAVTIQVVE-TGDGREIK 110 (201)
T ss_dssp ---H-------------HHHHHHHHHHGHHHHHHHHHTHE--EEHHHTEEEEEEST-TEEEETCEEEEEEE-TTTEEEEE
T ss_pred ---c-------------cccccccccccccccccccceEE--Eeeccccccccccc-cccccCcccceeec-cCCceEec
Confidence 0 001111 1 223333456777 77889999998765 42 2332222 22346899
Q ss_pred eCEEEEeeCCCCCcccCCCCCCCC-CCcceeecccCCCCCCCCCCeEEEEc
Q 018550 155 FDAVVVCNGHFSVPRLAQVPGIDS-WPGKQMHSHNYRIPNPFQDQVVILIG 204 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~p~~~g~~~-~~~~~~~~~~~~~~~~~~~~~v~ViG 204 (354)
||+||+||| +.++.|.++|.+. +....+............+++++|||
T Consensus 111 ~d~lviAtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 159 (201)
T PF07992_consen 111 YDYLVIATG--SRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG 159 (201)
T ss_dssp EEEEEEEST--EEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred CCeeeecCc--cccceeecCCCccccccccccccccccccccccccccccc
Confidence 999999999 8899999998731 11122222222111222345999999
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=97.33 Aligned_cols=143 Identities=23% Similarity=0.369 Sum_probs=84.6
Q ss_pred EEEcCChHHHHHHHHHHHc-----CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccc-ccccc
Q 018550 6 AVIGAGAAGLVVGHELLRE-----GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP-RELMG 79 (354)
Q Consensus 6 vIIG~G~aG~~~a~~l~~~-----g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (354)
+|||+|++|++++..|.++ ..+|+|||+.+ +|....+.+.....-....|...+ .+....+ .....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~-~G~G~~~~~~~~~~~llN~~a~~~-------s~~~~~~~~~f~~ 72 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP-FGAGGAYRPDQPPSHLLNTPADQM-------SLFPDDPGDDFVD 72 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-ccccccCCCCCChHHhhccccccc-------ccccccCCCCHHH
Confidence 6999999999999999988 45999999954 452322221111000000000000 0000000 11111
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (354)
|..-..... ........|++|..+.+|+++..+.. +++. .....+|++|...+ +++.+.+.+|. .+
T Consensus 73 Wl~~~~~~~--~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v-~~~~~~V~~i~~~~-~~~~v~~~~g~----~~ 144 (156)
T PF13454_consen 73 WLRANGADE--AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITV-RHVRAEVVDIRRDD-DGYRVVTADGQ----SI 144 (156)
T ss_pred HHHhcCccc--ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEE-EEEeeEEEEEEEcC-CcEEEEECCCC----EE
Confidence 100000000 01124567999999999998887763 2331 23468999999988 77999998886 88
Q ss_pred EeCEEEEeeCC
Q 018550 154 TFDAVVVCNGH 164 (354)
Q Consensus 154 ~~d~vIlAtG~ 164 (354)
.+|.||+|||+
T Consensus 145 ~~d~VvLa~Gh 155 (156)
T PF13454_consen 145 RADAVVLATGH 155 (156)
T ss_pred EeCEEEECCCC
Confidence 99999999994
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-11 Score=104.26 Aligned_cols=142 Identities=21% Similarity=0.095 Sum_probs=86.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||||+++|+.|++.|++|+|+|+...+|+.+.-.... .+. ..........+ .-.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~-------~~~-~~v~~~~~~~l---------~~~ 87 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGML-------FNK-IVVQEEADEIL---------DEF 87 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccc-------ccc-ccchHHHHHHH---------HHC
Confidence 5799999999999999999999999999999988877654221000 000 00000000000 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-EEEEEee------cC-CceEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK------KD-DVVEEE 153 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~------g~-~~~~~~ 153 (354)
+.++... .......++.++...+.+.+.+.|++ ++.+++|.++..++++. ..+.... +. .....+
T Consensus 88 gv~~~~~-----~~g~~~vd~~~l~~~L~~~A~~~Gv~--I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i 160 (257)
T PRK04176 88 GIRYKEV-----EDGLYVADSVEAAAKLAAAAIDAGAK--IFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTI 160 (257)
T ss_pred CCCceee-----cCcceeccHHHHHHHHHHHHHHcCCE--EEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEE
Confidence 1111110 00111234578888888888888988 99999999998765322 2222211 10 113589
Q ss_pred EeCEEEEeeCCCCC
Q 018550 154 TFDAVVVCNGHFSV 167 (354)
Q Consensus 154 ~~d~vIlAtG~~s~ 167 (354)
.++.||+|||+++.
T Consensus 161 ~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 161 EAKAVVDATGHDAE 174 (257)
T ss_pred EcCEEEEEeCCCcH
Confidence 99999999997553
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-12 Score=113.82 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=91.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC-CCCCCCCCCCCcccccccccchhcccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
|++||+||||||||++||+.|++.|++|+++|+++.+|.......... .....+.|.... . +........+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~----~---i~~~v~~~~~~ 74 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDE----E---IERKVTGARIY 74 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcch----h---hheeeeeeEEE
Confidence 579999999999999999999999999999999887764433211100 000000000000 0 00000000000
Q ss_pred ccCCCCCccCCCCCCCCCCC-CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 80 FQAYPFVARNYEGSVDLRRY-PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
+..-..... ......| ..+..+.+++.+.+.+.|.+ +..++++..+..++ +.+.+....+. .++.+++|
T Consensus 75 ~~~~~~~~~----~~~~~~y~v~R~~fd~~La~~A~~aGae--~~~~~~~~~~~~~~-~~~~~~~~~~~---~e~~a~~v 144 (396)
T COG0644 75 FPGEKVAIE----VPVGEGYIVDRAKFDKWLAERAEEAGAE--LYPGTRVTGVIRED-DGVVVGVRAGD---DEVRAKVV 144 (396)
T ss_pred ecCCceEEe----cCCCceEEEEhHHhhHHHHHHHHHcCCE--EEeceEEEEEEEeC-CcEEEEEEcCC---EEEEcCEE
Confidence 000000000 0001111 34688999999999999999 99999999999987 66666665553 58999999
Q ss_pred EEeeCCC
Q 018550 159 VVCNGHF 165 (354)
Q Consensus 159 IlAtG~~ 165 (354)
|.|+|..
T Consensus 145 I~AdG~~ 151 (396)
T COG0644 145 IDADGVN 151 (396)
T ss_pred EECCCcc
Confidence 9999953
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-11 Score=108.25 Aligned_cols=159 Identities=21% Similarity=0.180 Sum_probs=91.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
+++|+|||||++|+++|..|++.|++|+|+|+.+.+. ......++.. ....++.+.. .........+....+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~-~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDEC-LEAGFGFDGVDLFDPDG 82 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHH-HHhCCCccceEEECCCC
Confidence 4789999999999999999999999999999976432 1111110000 0000110000 00000000000000000
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
..+..++.... ............+.++.+.+.+.+.+.+++ +.++++|++++.++ +.+.+.+.++. ++.+|
T Consensus 83 -~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~~~ad 153 (375)
T PRK06847 83 -TLLAELPTPRL-AGDDLPGGGGIMRPALARILADAARAAGAD--VRLGTTVTAIEQDD-DGVTVTFSDGT----TGRYD 153 (375)
T ss_pred -CEEEecCcccc-cccCCCCcccCcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcC-CEEEEEEcCCC----EEEcC
Confidence 00000100000 000001112345678889999988888888 99999999998766 67888877764 78999
Q ss_pred EEEEeeCCCCCccc
Q 018550 157 AVVVCNGHFSVPRL 170 (354)
Q Consensus 157 ~vIlAtG~~s~~~~ 170 (354)
.||+|+|.+|..+.
T Consensus 154 ~vI~AdG~~s~~r~ 167 (375)
T PRK06847 154 LVVGADGLYSKVRS 167 (375)
T ss_pred EEEECcCCCcchhh
Confidence 99999998776653
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=110.58 Aligned_cols=154 Identities=21% Similarity=0.187 Sum_probs=86.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC-CCCCCCCCCC---Cccccc-ccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-SDPLGVDPNR---YPVHSS-LYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~-~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~ 76 (354)
++||+||||||||+++|..|+++|++|+|+||.+.++.......... .....+.|.. ...... ..+.+.......
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 48999999999999999999999999999999876653211110000 0000000000 000000 000000000000
Q ss_pred cccccCCCCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 77 LMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
.. .+.+..... ...... ....+.++.+++.+.+.+.|++ +..+++|+++..++ +.+.....++. ++.+
T Consensus 85 ~~---~~~~~~~~~-~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-g~v~~v~~~g~----~i~A 153 (428)
T PRK10157 85 AM---TMDYCNGDE-TSPSQRSYSVLRSKFDAWLMEQAEEAGAQ--LITGIRVDNLVQRD-GKVVGVEADGD----VIEA 153 (428)
T ss_pred ce---eeccccccc-cCCCCCceeeEHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEeC-CEEEEEEcCCc----EEEC
Confidence 00 001110000 000111 1245788999999999888998 99999999998765 55543333332 7899
Q ss_pred CEEEEeeCCCC
Q 018550 156 DAVVVCNGHFS 166 (354)
Q Consensus 156 d~vIlAtG~~s 166 (354)
+.||+|+|.++
T Consensus 154 ~~VI~A~G~~s 164 (428)
T PRK10157 154 KTVILADGVNS 164 (428)
T ss_pred CEEEEEeCCCH
Confidence 99999999644
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-11 Score=106.50 Aligned_cols=146 Identities=23% Similarity=0.229 Sum_probs=86.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC---CCCCCCCCCCCcccccccccchhcccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---SDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+||+|||||++|+++|..|++.|++|+|+|+.+.++..+.-. .+. ...+..... ..... +........... .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~--~~~~~~~~~~~~-~ 75 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGG-ALSPRVLEELDLPLE-LIVNL--VRGARFFSPNGD-S 75 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccC-ccCHhHHHHhcCCch-hhhhh--eeeEEEEcCCCc-E
Confidence 589999999999999999999999999999987654321110 000 000000000 00000 000000000000 0
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
...+.. .......++.++.+.+.+.+.+.+++ +.++++++++..++ +.+.+...++. .++++|+||
T Consensus 76 -~~~~~~-------~~~~~~i~r~~l~~~l~~~~~~~gv~--~~~~~~v~~~~~~~-~~~~~~~~~~~---~~~~a~~vv 141 (295)
T TIGR02032 76 -VEIPIE-------TELAYVIDRDAFDEQLAERAQEAGAE--LRLGTTVLDVEIHD-DRVVVIVRGGE---GTVTAKIVI 141 (295)
T ss_pred -EEeccC-------CCcEEEEEHHHHHHHHHHHHHHcCCE--EEeCcEEeeEEEeC-CEEEEEEcCcc---EEEEeCEEE
Confidence 000000 01112245688999999999888888 89999999998876 66666554432 478999999
Q ss_pred EeeCCCCC
Q 018550 160 VCNGHFSV 167 (354)
Q Consensus 160 lAtG~~s~ 167 (354)
+|+|.++.
T Consensus 142 ~a~G~~s~ 149 (295)
T TIGR02032 142 GADGSRSI 149 (295)
T ss_pred ECCCcchH
Confidence 99997553
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.6e-11 Score=111.33 Aligned_cols=152 Identities=25% Similarity=0.257 Sum_probs=89.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCcccccccccchhcc-c
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL-P 74 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~ 74 (354)
|+++|+||||||+|+++|..|+++|++|+|+|+.+.+. ......++.. ...+|+ ++.+.... +
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl-----------~~~l~~~~~~ 69 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGL-----------LERFLEKGRK 69 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCc-----------HHHHHhhccc
Confidence 57899999999999999999999999999999976431 1111100000 011111 11111000 0
Q ss_pred ccccccc----CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 75 RELMGFQ----AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 75 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.....+. .+.+... ...........+..+.+.+.+.+.+.+++ ++++++++++..++ +..++++.+.++ .
T Consensus 70 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~ 143 (493)
T PRK08244 70 LPSGHFAGLDTRLDFSAL--DTSSNYTLFLPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDG-DGVEVVVRGPDG-L 143 (493)
T ss_pred ccceEEecccccCCcccC--CCCCCcEEEecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcC-CeEEEEEEeCCc-c
Confidence 0000000 0111000 00000011134567888888888888888 99999999998876 667777654322 2
Q ss_pred EEEEeCEEEEeeCCCCCcc
Q 018550 151 EEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~ 169 (354)
.++++|+||.|+|.+|..+
T Consensus 144 ~~i~a~~vVgADG~~S~vR 162 (493)
T PRK08244 144 RTLTSSYVVGADGAGSIVR 162 (493)
T ss_pred EEEEeCEEEECCCCChHHH
Confidence 4789999999999776544
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=110.69 Aligned_cols=157 Identities=27% Similarity=0.330 Sum_probs=88.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhcc-cccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVNL-PRELMG 79 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~ 79 (354)
++|+|||||++|+++|..|+++|++|+|||+.+.+..... . ..+.|.. .+..-.+++.+.... +.....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~---~-----~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 73 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGR---G-----IGLSPNSLRILQRLGLLDEILARGSPHEVMR 73 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSS---S-----EEEEHHHHHHHHHTTEHHHHHHHSEEECEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccccccccc---c-----cccccccccccccccchhhhhhhccccccee
Confidence 6899999999999999999999999999999765421000 0 0000000 000000111111110 000000
Q ss_pred --c-cC---C------CCCccCC--CCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee
Q 018550 80 --F-QA---Y------PFVARNY--EGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK 145 (354)
Q Consensus 80 --~-~~---~------~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~ 145 (354)
+ .. . +...... ...........+..+.+.|.+.+.+.++. +.++++++++..+. +...+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~~~~d~-~~~~~~~~~ 150 (356)
T PF01494_consen 74 IFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVD--IRFGTRVVSIEQDD-DGVTVVVRD 150 (356)
T ss_dssp EEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEE--EEESEEEEEEEEET-TEEEEEEEE
T ss_pred eEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhh--heeeeecccccccc-ccccccccc
Confidence 0 00 0 0000000 00001111234678999999999998987 99999999999887 666666666
Q ss_pred c-CCceEEEEeCEEEEeeCCCCCccc
Q 018550 146 K-DDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 146 g-~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
+ +++.+++++|.||.|+|.+|.-+.
T Consensus 151 ~~~g~~~~i~adlvVgADG~~S~vR~ 176 (356)
T PF01494_consen 151 GEDGEEETIEADLVVGADGAHSKVRK 176 (356)
T ss_dssp TCTCEEEEEEESEEEE-SGTT-HHHH
T ss_pred ccCCceeEEEEeeeecccCcccchhh
Confidence 5 344568999999999998776554
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.5e-11 Score=108.46 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=84.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC-CCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++||+||||||||+++|+.|++.|++|+|+|+.+.+|.......... .....+.|.. .... .+........+.+
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~--~~~~---~i~~~~~~~~~~~ 79 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGF--AASA---PVERKVTREKISF 79 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccc--cccC---CccccccceeEEE
Confidence 37999999999999999999999999999999876543211100000 0000000100 0000 0000000000000
Q ss_pred c------CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 81 Q------AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 81 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
. ..++................+..+.+++.+.+.+.|++ ++.+++|+++..++ +.+.....++ .++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~~v~~~~----~~i~ 152 (429)
T PRK10015 80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQ--FIPGVRVDALVREG-NKVTGVQAGD----DILE 152 (429)
T ss_pred EeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCE--EECCcEEEEEEEeC-CEEEEEEeCC----eEEE
Confidence 0 00010000000000011235678888999989888988 89999999998765 4444332222 3799
Q ss_pred eCEEEEeeCCCCC
Q 018550 155 FDAVVVCNGHFSV 167 (354)
Q Consensus 155 ~d~vIlAtG~~s~ 167 (354)
++.||+|+|..+.
T Consensus 153 A~~VI~AdG~~s~ 165 (429)
T PRK10015 153 ANVVILADGVNSM 165 (429)
T ss_pred CCEEEEccCcchh
Confidence 9999999996443
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.7e-11 Score=112.79 Aligned_cols=162 Identities=20% Similarity=0.118 Sum_probs=90.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee---ecCCCCC--CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW---IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
.++|+||||||+|+++|..|+++|++|+|+|+.+.+.... ...++.. ....++...- ......+..+......+
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l-~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEV-LPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHH-HhhcccCCceEEEcCCC
Confidence 4799999999999999999999999999999986543211 1100000 0001111000 00000000000000000
Q ss_pred cccccCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 77 LMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
..+..++.... ...... .....+..+.+.+.+.+.++ +++ ++++++|++++.++ +.++++..+.+++..+++
T Consensus 89 -~~~~~~~~~~~--~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~-~~v~v~~~~~~G~~~~i~ 162 (538)
T PRK06183 89 -RCLAEIARPST--GEFGWPRRNAFHQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDD-DGVTVTLTDADGQRETVR 162 (538)
T ss_pred -CEEEEEcCCCC--CCCCCChhccCChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcC-CeEEEEEEcCCCCEEEEE
Confidence 00001110000 000000 11223456777888877765 777 99999999999887 778888765333346899
Q ss_pred eCEEEEeeCCCCCccc
Q 018550 155 FDAVVVCNGHFSVPRL 170 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~ 170 (354)
+|+||.|+|.+|..+.
T Consensus 163 ad~vVgADG~~S~vR~ 178 (538)
T PRK06183 163 ARYVVGCDGANSFVRR 178 (538)
T ss_pred EEEEEecCCCchhHHH
Confidence 9999999998776553
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=111.38 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=89.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchh--ccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRV--NLPRE 76 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~ 76 (354)
|.++|+|||||++|+++|..|++.|++|+|+|+.+...............-..+.|.. .+..-..++.+.. ..+..
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 5689999999999999999999999999999997521111000000000000111110 0000111222111 00100
Q ss_pred cccccC------CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 77 LMGFQA------YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 77 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.+.+.+ ..+...... .........+..+.+.+.+.+.+.+++ +++++++++++.++ +.+.+++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g~--- 153 (405)
T PRK05714 81 EMQVWDGSGTGQIHFSAASVH-AEVLGHIVENRVVQDALLERLHDSDIG--LLANARLEQMRRSG-DDWLLTLADGR--- 153 (405)
T ss_pred eEEEEcCCCCceEEecccccC-CCccEEEEEhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcC-CeEEEEECCCC---
Confidence 000000 000000000 000001123456777777777667777 88999999998876 67888887764
Q ss_pred EEEEeCEEEEeeCCCCCccc
Q 018550 151 EEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.+|+||.|+|.+|..+.
T Consensus 154 -~~~a~~vVgAdG~~S~vR~ 172 (405)
T PRK05714 154 -QLRAPLVVAADGANSAVRR 172 (405)
T ss_pred -EEEeCEEEEecCCCchhHH
Confidence 7999999999998876654
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-11 Score=99.91 Aligned_cols=141 Identities=18% Similarity=0.092 Sum_probs=85.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||+|+++|+.|+++|.+|+|+||+..+|+....... ..+.. .... ....+ ....
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~-------~~~~~-~~~~-~~~~~--------l~~~ 83 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGM-------LFSKI-VVEK-PAHEI--------LDEF 83 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCc-------ceecc-cccc-hHHHH--------HHHC
Confidence 479999999999999999999999999999999887654321100 00000 0000 00000 0001
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC--cEEEEEee------cC-CceEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN--KWKVKSRK------KD-DVVEE 152 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~--~~~v~~~~------g~-~~~~~ 152 (354)
+.++... .......++.++...+.+.+.+.+++ +..++++.++..+++. ...+.+.. +. .....
T Consensus 84 gi~~~~~-----~~g~~~~~~~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~ 156 (254)
T TIGR00292 84 GIRYEDE-----GDGYVVADSAEFISTLASKALQAGAK--IFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT 156 (254)
T ss_pred CCCeeec-----cCceEEeeHHHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE
Confidence 2222110 00111234478888888888888988 9999999999876621 22233321 10 01358
Q ss_pred EEeCEEEEeeCCCC
Q 018550 153 ETFDAVVVCNGHFS 166 (354)
Q Consensus 153 ~~~d~vIlAtG~~s 166 (354)
+.++.||.|||+.+
T Consensus 157 i~Ak~VVdATG~~a 170 (254)
T TIGR00292 157 QRSRVVVDATGHDA 170 (254)
T ss_pred EEcCEEEEeecCCc
Confidence 99999999999643
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.2e-11 Score=107.27 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=86.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC-CCccceeecCCCCC---CCCCCCCCCCCcccccccccchhccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYTSETE---SDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~-~~~gg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
+||+||||||||+++|+.|++.|++|+|+|+. +.. ..|.. .+. ...+++ |... .. ..+..+....+....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~-~~cg~--~i~~~~l~~l~i-~~~~-~~-~~~~~~~~~~~~~~~ 74 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNI-KPCGG--AIPPCLIEEFDI-PDSL-ID-RRVTQMRMISPSRVP 74 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCc-CcCcC--CcCHhhhhhcCC-chHH-Hh-hhcceeEEEcCCCce
Confidence 68999999999999999999999999999996 211 00100 000 001111 0000 00 001111111111100
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec----CCceEEEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK----DDVVEEET 154 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g----~~~~~~~~ 154 (354)
....++.. ........+..+.+++.+.+.+.|++ ++. .+++++..++ +.+.++..++ .++..++.
T Consensus 75 ~~~~~~~~-------~~~~~~~~r~~fd~~L~~~a~~~G~~--v~~-~~v~~v~~~~-~~~~v~~~~~~~~~~~~~~~i~ 143 (388)
T TIGR02023 75 IKVTIPSE-------DGYVGMVRREVFDSYLRERAQKAGAE--LIH-GLFLKLERDR-DGVTLTYRTPKKGAGGEKGSVE 143 (388)
T ss_pred eeeccCCC-------CCceEeeeHHHHHHHHHHHHHhCCCE--EEe-eEEEEEEEcC-CeEEEEEEeccccCCCcceEEE
Confidence 00000000 00111257789999999999888988 654 5688988776 7788877642 12235799
Q ss_pred eCEEEEeeCCCCCcc
Q 018550 155 FDAVVVCNGHFSVPR 169 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~ 169 (354)
+|+||.|+|.+|..+
T Consensus 144 a~~VI~AdG~~S~v~ 158 (388)
T TIGR02023 144 ADVVIGADGANSPVA 158 (388)
T ss_pred eCEEEECCCCCcHHH
Confidence 999999999766544
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-11 Score=109.60 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=91.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC-CCc---cceeecCCCCC--CCCCCCCCCCCcccccccccchhccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV---GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLP 74 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~-~~~---gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (354)
+.++|+||||||+|+++|..|++.|++|+|+|+. +.+ |......++.. ....|+.+.-.-.....+........
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~ 80 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG 80 (387)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecC
Confidence 4689999999999999999999999999999997 221 11111110000 11122210000000000000000000
Q ss_pred cccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEe-ecCCceEE
Q 018550 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEE 152 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~~~ 152 (354)
.. ....++.... . .........+..+...+.+.+.+.+ ++ +.++++|+.++.++ +..+++.. +|. +
T Consensus 81 ~~--~~~~~~~~~~--~-~~~~~~~~~~~~l~~~L~~~~~~~~~v~--~~~~~~v~~~~~~~-~~v~v~l~~dG~----~ 148 (387)
T COG0654 81 GR--RLLIFDAAEL--G-RGALGYVVPRSDLLNALLEAARALPNVT--LRFGAEVEAVEQDG-DGVTVTLSFDGE----T 148 (387)
T ss_pred Cc--eeEEeccccc--C-CCcceEEeEhHHHHHHHHHHHhhCCCcE--EEcCceEEEEEEcC-CceEEEEcCCCc----E
Confidence 00 0000000000 0 0011122345888899999888765 77 99999999999987 67778887 654 8
Q ss_pred EEeCEEEEeeCCCCCccc
Q 018550 153 ETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~~ 170 (354)
+.+|+||.|+|.+|.-|.
T Consensus 149 ~~a~llVgADG~~S~vR~ 166 (387)
T COG0654 149 LDADLLVGADGANSAVRR 166 (387)
T ss_pred EecCEEEECCCCchHHHH
Confidence 999999999998776554
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=106.52 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=83.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc-
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ- 81 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 81 (354)
++|+||||||||+++|..|++.|++|+|+|+....+..|.- +.|...+..-.....+..+.......+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~----------~i~~~~l~~~g~~~~~~~~~i~~~~~~~p 70 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGG----------AIPLCMVDEFALPRDIIDRRVTKMKMISP 70 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccc----------cccHhhHhhccCchhHHHhhhceeEEecC
Confidence 58999999999999999999999999999997554333321 1111100000000011100000000000
Q ss_pred -CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe--CCCcEEEEEeecC-----CceEEE
Q 018550 82 -AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV--ESNKWKVKSRKKD-----DVVEEE 153 (354)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~--~~~~~~v~~~~g~-----~~~~~~ 153 (354)
....................+..+.+++.+.+.+.|++ +..+ ++.++... .++.+.++..... ++..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~--v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i 147 (398)
T TIGR02028 71 SNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGAT--LING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTL 147 (398)
T ss_pred CceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcE--EEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEE
Confidence 00000000000000111256788999999999988998 7665 57776532 2255666643211 223579
Q ss_pred EeCEEEEeeCCCCCc
Q 018550 154 TFDAVVVCNGHFSVP 168 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~ 168 (354)
.+++||.|+|..|..
T Consensus 148 ~a~~VIgADG~~S~v 162 (398)
T TIGR02028 148 EVDAVIGADGANSRV 162 (398)
T ss_pred EeCEEEECCCcchHH
Confidence 999999999965543
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-11 Score=109.28 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=88.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc---eeecCCCCC--CCCCCCCCCCCccccc-ccccchhcccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSS-LYKSLRVNLPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 75 (354)
.++|+|||||++|+++|..|++.|++|+|+|+.+.++. .....++.. ...+++.+. +.... ....+......
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~--~~~~~~~~~~~~~~~~~ 81 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEA--ARQRAVFTDHLTMMDAV 81 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHH--HHhhccCCcceEEEeCC
Confidence 46999999999999999999999999999999865431 111111000 001111100 00000 00000000000
Q ss_pred ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
....+..++.................+.++.+.+.+.+.+.+ ++ ++++++++++..++ +.+.+++.++. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~g~----~~~ 154 (396)
T PRK08163 82 DAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVE--FRTSTHVVGIEQDG-DGVTVFDQQGN----RWT 154 (396)
T ss_pred CCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcE--EEeCCEEEEEecCC-CceEEEEcCCC----EEe
Confidence 000000000000000000000012356778888888776654 66 88999999998766 67888777664 789
Q ss_pred eCEEEEeeCCCCCcccC
Q 018550 155 FDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~p 171 (354)
+|.||.|+|.+|..+..
T Consensus 155 ad~vV~AdG~~S~~r~~ 171 (396)
T PRK08163 155 GDALIGCDGVKSVVRQS 171 (396)
T ss_pred cCEEEECCCcChHHHhh
Confidence 99999999987766543
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-11 Score=109.72 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=88.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhcc-cc--c
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVNL-PR--E 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~--~ 76 (354)
.++|+||||||+|+++|..|+++|++|+|+|+.+.....-... .++.+.. .+..-.+++.+.... +. .
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra-------~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~ 75 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRA-------GGLHARTLEVLDQRGIADRFLAQGQVAQVT 75 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcce-------eeECHHHHHHHHHcCcHHHHHhcCCccccc
Confidence 4799999999999999999999999999999976421000000 0001000 000001111111100 00 0
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
.+....+..... ..............+.+.+.+.+.+.+++ +++++++++++.++ +.+.+++.++. ++.+|
T Consensus 76 ~~~~~~~~~~~~--~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~-~~v~v~~~~g~----~i~a~ 146 (488)
T PRK06834 76 GFAATRLDISDF--PTRHNYGLALWQNHIERILAEWVGELGVP--IYRGREVTGFAQDD-TGVDVELSDGR----TLRAQ 146 (488)
T ss_pred eeeeEecccccC--CCCCCccccccHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CeEEEEECCCC----EEEeC
Confidence 000000110000 00000011123467778888888888888 99999999999877 67777776553 79999
Q ss_pred EEEEeeCCCCCcc
Q 018550 157 AVVVCNGHFSVPR 169 (354)
Q Consensus 157 ~vIlAtG~~s~~~ 169 (354)
+||.|+|.+|..+
T Consensus 147 ~vVgADG~~S~vR 159 (488)
T PRK06834 147 YLVGCDGGRSLVR 159 (488)
T ss_pred EEEEecCCCCCcH
Confidence 9999999877544
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.2e-11 Score=111.70 Aligned_cols=164 Identities=20% Similarity=0.155 Sum_probs=87.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec---CCCCC--CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY---TSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
+.+|+||||||+|+++|..|+++|++|+|+|+.+.+...-.- .++.. ...+++...- ......+..........
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l-~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRV-VAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHH-HhcCccccceeEEeCCc
Confidence 478999999999999999999999999999997654211000 00000 0011111000 00000000000000000
Q ss_pred cccccCCC-CCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 77 LMGFQAYP-FVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
...-..+. .................+..+.+.+.+.+.+.+++ +++++++++++.++ +.++++..+..+ ..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~~~~-~~~i~a 157 (502)
T PRK06184 82 SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHR--VEFGCELVGFEQDA-DGVTARVAGPAG-EETVRA 157 (502)
T ss_pred eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEEcC-CcEEEEEEeCCC-eEEEEe
Confidence 00000000 00000000000011123466777888888887887 99999999999876 667777643211 258999
Q ss_pred CEEEEeeCCCCCccc
Q 018550 156 DAVVVCNGHFSVPRL 170 (354)
Q Consensus 156 d~vIlAtG~~s~~~~ 170 (354)
|+||.|+|.+|.-+.
T Consensus 158 ~~vVgADG~~S~vR~ 172 (502)
T PRK06184 158 RYLVGADGGRSFVRK 172 (502)
T ss_pred CEEEECCCCchHHHH
Confidence 999999998775443
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-11 Score=109.69 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=85.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc-----ceeecCCCCC--CCCCCCCCCCCcccccccccchhccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLP 74 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g-----g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (354)
.++|+|||||++|+++|..|++.|++|+|+|+.+.+. ......+... ...+|+..+-. -.......+....
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~-~~~~~~~~~~~~~- 95 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKIL-PQIGKFRQIRLSD- 95 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhH-hhcCCccEEEEEe-
Confidence 4789999999999999999999999999999976542 1111111000 01112111000 0000000000000
Q ss_pred cccccccCCCCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 75 RELMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
........+..... . .... ....+..+.+.+.+.+.+. +++ +++++++++++.++ +.+.+++.++. ...+
T Consensus 96 ~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~-~~~~v~~~~~~-~~~~ 167 (415)
T PRK07364 96 ADYPGVVKFQPTDL--G--TEALGYVGEHQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQ-DAATVTLEIEG-KQQT 167 (415)
T ss_pred CCCCceeeeccccC--C--CCccEEEEecHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeeEEEEccCC-cceE
Confidence 00000000100000 0 0000 0112245667777766654 576 88899999998776 67778776432 1247
Q ss_pred EEeCEEEEeeCCCCCccc
Q 018550 153 ETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~~ 170 (354)
+++|+||.|+|.+|.-+.
T Consensus 168 i~adlvIgADG~~S~vR~ 185 (415)
T PRK07364 168 LQSKLVVAADGARSPIRQ 185 (415)
T ss_pred EeeeEEEEeCCCCchhHH
Confidence 999999999998776543
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.5e-11 Score=108.37 Aligned_cols=159 Identities=16% Similarity=0.061 Sum_probs=89.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhc--ccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVN--LPREL 77 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~ 77 (354)
.++|+||||||+|+++|..|++.|++|+|+|+.+.+.......... ...++.|.. .+..-..++.+... .+...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~--r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPAL--RVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCc--eeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 4799999999999999999999999999999976532100000000 000011100 00000111111100 00000
Q ss_pred cccc------CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 78 MGFQ------AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
+.+. ...+...... .........+..+.+.+.+.+... +++ +++++++++++.++ +.+.++..++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~--- 153 (400)
T PRK08013 81 MEVWDKDSFGRIAFDDQSMG-YSHLGHIIENSVIHYALWQKAQQSSDIT--LLAPAELQQVAWGE-NEAFLTLKDGS--- 153 (400)
T ss_pred EEEEeCCCCceEEEcccccC-CCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeEEEEEcCCC---
Confidence 0000 0000000000 000001234577888888877765 677 89999999998876 67778877664
Q ss_pred EEEEeCEEEEeeCCCCCccc
Q 018550 151 EEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.+|+||.|+|.+|.-+.
T Consensus 154 -~i~a~lvVgADG~~S~vR~ 172 (400)
T PRK08013 154 -MLTARLVVGADGANSWLRN 172 (400)
T ss_pred -EEEeeEEEEeCCCCcHHHH
Confidence 8999999999998776654
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-11 Score=109.17 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=86.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
+++|+||||||+|+++|..|++.|++|+|+|+.+.+. +.....++.. ....++...-.-........+.......
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 3689999999999999999999999999999987541 1100111000 0111111000000000000000000000
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCC-cEEEEEeecCCceEEEE
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEET 154 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~ 154 (354)
. ...+++... . .........+.++.+.+.+.+.. .+++ ++++++++++..++++ .+.++..++. ++.
T Consensus 85 ~--~~~~~~~~~--~-~~g~~~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~g~----~~~ 153 (388)
T PRK07045 85 L--IASLDYRSA--S-ALGYFILIPCEQLRRLLLAKLDGLPNVR--LRFETSIERIERDADGTVTSVTLSDGE----RVA 153 (388)
T ss_pred E--EEEecCCcc--c-cCCceEEccHHHHHHHHHHHHhcCCCee--EEeCCEEEEEEECCCCcEEEEEeCCCC----EEE
Confidence 0 000111100 0 00001113457788877777654 4677 9999999999986633 2456766654 789
Q ss_pred eCEEEEeeCCCCCccc
Q 018550 155 FDAVVVCNGHFSVPRL 170 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~ 170 (354)
+|.||.|+|.+|..+.
T Consensus 154 ~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 154 PTVLVGADGARSMIRD 169 (388)
T ss_pred CCEEEECCCCChHHHH
Confidence 9999999998775554
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.9e-11 Score=107.76 Aligned_cols=143 Identities=15% Similarity=0.101 Sum_probs=85.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||||+++|..|++.|++|+|+|+.+.. .|..+.+ .- ...+......+.+...-+.....+.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~--~~p~~~g-------~w-~~~l~~lgl~~~l~~~w~~~~v~~~ 97 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLS--IWPNNYG-------VW-VDEFEALGLLDCLDTTWPGAVVYID 97 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccc--hhccccc-------hH-HHHHHHCCcHHHHHhhCCCcEEEEe
Confidence 369999999999999999999999999999986431 1111100 00 0000000000000000000000000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+. .. ..........++.++.+.+.+.+...+++ +. ..+|++++..+ +.+.|++.+|. ++.++.||.|
T Consensus 98 ~~-~~----~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~--~~-~~~V~~I~~~~-~~~~V~~~dG~----~i~A~lVI~A 164 (447)
T PLN02463 98 DG-KK----KDLDRPYGRVNRKKLKSKMLERCIANGVQ--FH-QAKVKKVVHEE-SKSLVVCDDGV----KIQASLVLDA 164 (447)
T ss_pred CC-CC----ccccCcceeEEHHHHHHHHHHHHhhcCCE--EE-eeEEEEEEEcC-CeEEEEECCCC----EEEcCEEEEC
Confidence 00 00 00011122346788999998888888887 54 57999999876 77888888764 8999999999
Q ss_pred eCCCCC
Q 018550 162 NGHFSV 167 (354)
Q Consensus 162 tG~~s~ 167 (354)
+|..+.
T Consensus 165 dG~~s~ 170 (447)
T PLN02463 165 TGFSRC 170 (447)
T ss_pred cCCCcC
Confidence 996543
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=106.31 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=84.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC---CCCCCCCCCCCcccccccccchhcccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---SDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
|++||+||||||||+++|..|++.|++|+|+|+.......|-- .++ ...++. +... .. .....+....+...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg--~i~~~~l~~lgl-~~~~-~~-~~i~~~~~~~p~~~ 112 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGG--AIPLCMVGEFDL-PLDI-ID-RKVTKMKMISPSNV 112 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccc--cccHhHHhhhcC-cHHH-HH-HHhhhheEecCCce
Confidence 4689999999999999999999999999999996432111110 000 000010 0000 00 00000000001000
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC--CCcEEEEEeec-----CCce
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKK-----DDVV 150 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g-----~~~~ 150 (354)
. ..++.... .........+..+.+++.+.+.+.|.+ ++. .++.++.... ++.+.++..+. .++.
T Consensus 113 -~-v~~~~~~~----~~~~~~~v~R~~~d~~L~~~A~~~Ga~--~~~-~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~ 183 (450)
T PLN00093 113 -A-VDIGKTLK----PHEYIGMVRREVLDSFLRERAQSNGAT--LIN-GLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTP 183 (450)
T ss_pred -E-EEecccCC----CCCeEEEecHHHHHHHHHHHHHHCCCE--EEe-ceEEEEEeccCCCCcEEEEEEeccccccCCCc
Confidence 0 00000000 000001257789999999999888988 655 4677776432 24566766442 1223
Q ss_pred EEEEeCEEEEeeCCCCCcc
Q 018550 151 EEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~ 169 (354)
.++.+|.||.|+|.+|.-+
T Consensus 184 ~~v~a~~VIgADG~~S~vr 202 (450)
T PLN00093 184 KTLEVDAVIGADGANSRVA 202 (450)
T ss_pred cEEEeCEEEEcCCcchHHH
Confidence 5799999999999766443
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=106.16 Aligned_cols=148 Identities=18% Similarity=0.098 Sum_probs=82.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc----cceeecCCCCC--CCCCCCCCCCCcccccccccchhcccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~----gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (354)
.++|+|||||++|+++|..|++.|++|+|+|+.+.. |+.....++.. ...+++.+.... .............
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~--~~~~~~~~~~~~~ 83 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADI--GVPSRERIYLDRD 83 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccc--ccCccceEEEeCC
Confidence 478999999999999999999999999999997532 11111111000 011111111000 0000000000000
Q ss_pred ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
+ ..+...+ .......+..+.+.+.+.+ .+.. ++++++|++++.++ +.++++..+|. ++.+
T Consensus 84 g-~~~~~~~----------~~~~~~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~a 143 (386)
T PRK07236 84 G-RVVQRRP----------MPQTQTSWNVLYRALRAAF--PAER--YHLGETLVGFEQDG-DRVTARFADGR----RETA 143 (386)
T ss_pred C-CEeeccC----------CCccccCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecC-CeEEEEECCCC----EEEe
Confidence 0 0000000 0011123444555444322 1234 89999999999876 77888888775 8899
Q ss_pred CEEEEeeCCCCCcccC
Q 018550 156 DAVVVCNGHFSVPRLA 171 (354)
Q Consensus 156 d~vIlAtG~~s~~~~p 171 (354)
|.||.|+|.+|..+..
T Consensus 144 d~vIgADG~~S~vR~~ 159 (386)
T PRK07236 144 DLLVGADGGRSTVRAQ 159 (386)
T ss_pred CEEEECCCCCchHHHH
Confidence 9999999987776643
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-11 Score=108.78 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=85.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhc--cc-cc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVN--LP-RE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~-~~ 76 (354)
.+||+|||||++|+++|..|++.|++|+|+|+.+...-.-...+... -..+.|.. .+..-..++.+... .+ ..
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r--~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVR--ISAISAASVALLKGLGVWDAVQAMRSHPYRR 82 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCce--EEeccHHHHHHHHHcCChhhhhhhhCcccce
Confidence 47999999999999999999999999999998642110000000000 00000000 00000011111000 00 00
Q ss_pred cc--cccCC--CCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 77 LM--GFQAY--PFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 77 ~~--~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.. .+... .+..... ..... ....+..+.+.+.+.+... +++ +.++++++++..++ +.+.+.+.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~--~~~~~g~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g~--- 154 (391)
T PRK08020 83 LETWEWETAHVVFDAAEL--KLPELGYMVENRVLQLALWQALEAHPNVT--LRCPASLQALQRDD-DGWELTLADGE--- 154 (391)
T ss_pred EEEEeCCCCeEEeccccc--CCCccEEEEEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcC-CeEEEEECCCC---
Confidence 00 00000 0000000 00000 0134467777887777665 777 88899999998776 67888877654
Q ss_pred EEEEeCEEEEeeCCCCCcc
Q 018550 151 EEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~ 169 (354)
++.+|.||.|+|.+|.-+
T Consensus 155 -~~~a~~vI~AdG~~S~vR 172 (391)
T PRK08020 155 -EIQAKLVIGADGANSQVR 172 (391)
T ss_pred -EEEeCEEEEeCCCCchhH
Confidence 799999999999877543
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.7e-11 Score=107.59 Aligned_cols=156 Identities=19% Similarity=0.228 Sum_probs=90.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCcccccccccchhcc-c
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL-P 74 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~ 74 (354)
|.++|+|||||++|+++|..|+++|++|+|+|+.+.+. ......++.. ...+++ ++.+.... +
T Consensus 1 ~~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl-----------~~~l~~~~~~ 69 (400)
T PRK06475 1 TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGV-----------ADRLSGTGVT 69 (400)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCC-----------hHHHhhcccC
Confidence 56899999999999999999999999999999976542 2211111100 011111 11110000 0
Q ss_pred cccccccC-CCCCc-c--CC---CCCCCCCC--CCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEe
Q 018550 75 RELMGFQA-YPFVA-R--NY---EGSVDLRR--YPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSR 144 (354)
Q Consensus 75 ~~~~~~~~-~~~~~-~--~~---~~~~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~ 144 (354)
...+.+.+ ..... . .. ........ ...+.++.+.+.+.+... +++ ++++++|+++..++ +.+.++..
T Consensus 70 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~-~~v~v~~~ 146 (400)
T PRK06475 70 PKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTG-NSITATII 146 (400)
T ss_pred cceEEEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCC-CceEEEEE
Confidence 00000000 00000 0 00 00000111 135678888888877653 677 89999999998766 67777765
Q ss_pred ecCCceEEEEeCEEEEeeCCCCCcccC
Q 018550 145 KKDDVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 145 ~g~~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
++.+ ...+.+|.||.|+|.+|..|..
T Consensus 147 ~~~~-~~~~~adlvIgADG~~S~vR~~ 172 (400)
T PRK06475 147 RTNS-VETVSAAYLIACDGVWSMLRAK 172 (400)
T ss_pred eCCC-CcEEecCEEEECCCccHhHHhh
Confidence 4321 1378999999999988766654
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.2e-11 Score=106.94 Aligned_cols=150 Identities=25% Similarity=0.379 Sum_probs=90.1
Q ss_pred EEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCC--CCCCCCC-Ccc---cccccccchhcccccccc
Q 018550 6 AVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP--LGVDPNR-YPV---HSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 6 vIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~--~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~ 79 (354)
+|||||++|+++|..|+++|.+|+|+|+++.+|+.+...++...+. ....+.. ... ....+..+......+...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999988887665443222100 0000000 000 000111111111111111
Q ss_pred c-c--CCCCCccCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE
Q 018550 80 F-Q--AYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 80 ~-~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (354)
+ . +.++... .....|| ....+.+.+.+.+++.+++ ++++++|+++...+ +.+.+.+. + ..+
T Consensus 81 ~~~~~Gv~~~~~-----~~g~~~p~~~~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~-~~~~v~~~-~----~~i 147 (400)
T TIGR00275 81 FFESLGLELKVE-----EDGRVFPCSDSAADVLDALLNELKELGVE--ILTNSKVKSIKKDD-NGFGVETS-G----GEY 147 (400)
T ss_pred HHHHcCCeeEEe-----cCCEeECCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecC-CeEEEEEC-C----cEE
Confidence 1 0 1111110 1122333 2477888888888888888 99999999998765 66777663 2 278
Q ss_pred EeCEEEEeeCCCCCc
Q 018550 154 TFDAVVVCNGHFSVP 168 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~ 168 (354)
.+|.||+|+|.++.|
T Consensus 148 ~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 148 EADKVILATGGLSYP 162 (400)
T ss_pred EcCEEEECCCCcccC
Confidence 999999999976654
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=105.94 Aligned_cols=158 Identities=15% Similarity=0.085 Sum_probs=86.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCcccccccccchhcccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
++|+|||||++|+++|..|+++|++|+|+|+.+.+. ..+..++... ...+++...- ......+..+......+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l-~~~~~~~~~~~~~~~~g- 78 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQL-REAGYQIEHVRSVDPTG- 78 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHH-HhccCCccceEEEcCCC-
Confidence 489999999999999999999999999999976541 1121111100 0001110000 00000000000000000
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
..+..++..... ...........+.++.+.+.+.... +++ ++++++|++++.++ +.+++++.+|. ++.+|.
T Consensus 79 ~~~~~~~~~~~~-~~~g~~~~~i~r~~l~~~L~~~~~~-~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~~d~ 149 (391)
T PRK07588 79 RRKADLNVDSFR-RMVGDDFTSLPRGDLAAAIYTAIDG-QVE--TIFDDSIATIDEHR-DGVRVTFERGT----PRDFDL 149 (391)
T ss_pred CEEEEecHHHcc-ccCCCceEEEEHHHHHHHHHHhhhc-CeE--EEeCCEEeEEEECC-CeEEEEECCCC----EEEeCE
Confidence 000001100000 0000000123456677766654432 566 99999999999876 77888888765 679999
Q ss_pred EEEeeCCCCCcccC
Q 018550 158 VVVCNGHFSVPRLA 171 (354)
Q Consensus 158 vIlAtG~~s~~~~p 171 (354)
||.|+|.+|.-+..
T Consensus 150 vIgADG~~S~vR~~ 163 (391)
T PRK07588 150 VIGADGLHSHVRRL 163 (391)
T ss_pred EEECCCCCccchhh
Confidence 99999987776653
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=104.02 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC-CCCC--------CCCCCCC-CCCCcccccccccchh
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT-SETE--------SDPLGVD-PNRYPVHSSLYKSLRV 71 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~ 71 (354)
++||+||||||||+++|..|++. ++|+++|+.+..+..-... .+.. ...++.. +........
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~------- 72 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ------- 72 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc-------
Confidence 47999999999999999999999 9999999976432000000 0000 0001110 000000000
Q ss_pred ccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEe-ecCCce
Q 018550 72 NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVV 150 (354)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~ 150 (354)
.+......+...............++.++.+.+.+.. ..+++ +.+++.+.++..++ +.+.++.. ++. .
T Consensus 73 -----~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~~g~--~ 141 (351)
T PRK11445 73 -----IFAVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWRED-DGYHVIFRADGW--E 141 (351)
T ss_pred -----cceeeEecccccchhhcCCCcccccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcC-CEEEEEEecCCc--E
Confidence 0000000010000000000111256688888887753 45777 89999999998876 77888763 332 2
Q ss_pred EEEEeCEEEEeeCCCCCcc
Q 018550 151 EEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~ 169 (354)
.++.+|+||.|+|..|..+
T Consensus 142 ~~i~a~~vV~AdG~~S~vr 160 (351)
T PRK11445 142 QHITARYLVGADGANSMVR 160 (351)
T ss_pred EEEEeCEEEECCCCCcHHh
Confidence 4789999999999766544
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.9e-11 Score=107.63 Aligned_cols=157 Identities=14% Similarity=0.148 Sum_probs=87.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhc--ccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVN--LPREL 77 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~ 77 (354)
.++|+||||||+|+++|..|+++|++|+|+|+.+.... ..... ......+.|.. .+..-..++.+... .+...
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~--~~~~~-~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRW--QADQP-DLRVYAFAADNAALLDRLGVWPAVRAARAQPYRR 82 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCccc--ccCCC-CCEEEEecHHHHHHHHHCCchhhhhHhhCCcccE
Confidence 37999999999999999999999999999999753210 00000 00000000100 00000011111100 00000
Q ss_pred ccccC------CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceE
Q 018550 78 MGFQA------YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (354)
Q Consensus 78 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~ 151 (354)
+.+.+ ..+...... .........+..+.+.+.+.+.+.+++ +.++++|+++..++ +.+++++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~g~---- 154 (392)
T PRK08773 83 MRVWDAGGGGELGFDADTLG-REQLGWIVENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDA-DRVRLRLDDGR---- 154 (392)
T ss_pred EEEEeCCCCceEEechhccC-CCcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecC-CeEEEEECCCC----
Confidence 00000 000000000 000001134577888888888888888 89999999998876 67888776654
Q ss_pred EEEeCEEEEeeCCCCCcc
Q 018550 152 EETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 152 ~~~~d~vIlAtG~~s~~~ 169 (354)
++.+|.||.|+|.+|..+
T Consensus 155 ~~~a~~vV~AdG~~S~vr 172 (392)
T PRK08773 155 RLEAALAIAADGAASTLR 172 (392)
T ss_pred EEEeCEEEEecCCCchHH
Confidence 789999999999766433
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.3e-11 Score=107.67 Aligned_cols=155 Identities=14% Similarity=0.134 Sum_probs=87.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccce--------eecCCCCC--CCCCCCCCCCCcccccccccchhcc
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS--------WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~--------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
||+|||||++|+++|..|++.|++|+|+|+.+.++.. ....+... ...+++..+-.-.....+..+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 6999999999999999999999999999998654211 11100000 0011111000000000000000000
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
...... ..++.... . .........+.++.+.+.+.+.+.+ ++ ++++++|+++...+ +.+.++..++. +
T Consensus 81 ~~~~~~-~~~~~~~~--~-~~~~~~~i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~ 149 (385)
T TIGR01988 81 GGSFGA-LHFDADEI--G-LEALGYVVENRVLQQALWERLQEYPNVT--LLCPARVVELPRHS-DHVELTLDDGQ----Q 149 (385)
T ss_pred CCCCce-EEechhhc--C-CCccEEEEEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecC-CeeEEEECCCC----E
Confidence 000000 00000000 0 0000112345788888888887776 77 89999999998876 77888877764 7
Q ss_pred EEeCEEEEeeCCCCCcc
Q 018550 153 ETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~ 169 (354)
+.+|.||.|+|.+|..+
T Consensus 150 ~~~~~vi~adG~~S~vr 166 (385)
T TIGR01988 150 LRARLLVGADGANSKVR 166 (385)
T ss_pred EEeeEEEEeCCCCCHHH
Confidence 99999999999876544
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-10 Score=104.64 Aligned_cols=141 Identities=21% Similarity=0.174 Sum_probs=84.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
||+|||||+||+++|..|++.|++|+|+|+.+..++.... ++.+.. + .......+..+.-.....+. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~---------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~ 68 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTY---------GVWDDD-L-SDLGLADCVEHVWPDVYEYR-F 68 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccc---------cccHhh-h-hhhchhhHHhhcCCCceEEe-c
Confidence 6999999999999999999999999999998766543211 100000 0 00000000000000000000 0
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeC
Q 018550 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG 163 (354)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG 163 (354)
+-... ..........+..+.+.+.+.+.+.++. + ...+|..+..++++.+.+++.++. ++.++.||.|+|
T Consensus 69 ~~~~~---~~~~~~~~i~~~~l~~~l~~~~~~~gv~--~-~~~~v~~i~~~~~~~~~v~~~~g~----~~~a~~VI~A~G 138 (388)
T TIGR01790 69 PKQPR---KLGTAYGSVDSTRLHEELLQKCPEGGVL--W-LERKAIHAEADGVALSTVYCAGGQ----RIQARLVIDARG 138 (388)
T ss_pred CCcch---hcCCceeEEcHHHHHHHHHHHHHhcCcE--E-EccEEEEEEecCCceeEEEeCCCC----EEEeCEEEECCC
Confidence 00000 0001111245688899999888888876 5 467888888763377888887664 899999999999
Q ss_pred CCC
Q 018550 164 HFS 166 (354)
Q Consensus 164 ~~s 166 (354)
.++
T Consensus 139 ~~s 141 (388)
T TIGR01790 139 FGP 141 (388)
T ss_pred Cch
Confidence 765
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=104.99 Aligned_cols=153 Identities=17% Similarity=0.136 Sum_probs=86.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc---eeecCCCCCCCCCCCCCCC--Ccccccccccchh--cc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETESDPLGVDPNR--YPVHSSLYKSLRV--NL 73 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~ 73 (354)
|+++|+|||||++|+++|..|++.|++|+|+|+.+.+.. .|.. +. .++.|.. .+.....++.+.. ..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~--r~----~~l~~~~~~~l~~~g~~~~~~~~~~~ 77 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDS--RV----YAISPSSQAFLERLGVWQALDAARLA 77 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCC--ce----EeecHHHHHHHHHcCchhhhhhhcCC
Confidence 567999999999999999999999999999999865421 1100 00 0000000 0000001111000 00
Q ss_pred ccccccccC-----CCCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 74 PRELMGFQA-----YPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 74 ~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
+...+.+.+ +.+... ....... ....+..+.+.+.+.+.+.+ ++ +. +.+++++...+ +.+.+++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~-~~~~v~~~~g 151 (388)
T PRK07608 78 PVYDMRVFGDAHARLHFSAY--QAGVPQLAWIVESSLIERALWAALRFQPNLT--WF-PARAQGLEVDP-DAATLTLADG 151 (388)
T ss_pred cceEEEEEECCCceeEeecc--ccCCCCCEEEEEhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecC-CeEEEEECCC
Confidence 000000000 000000 0000000 01235778888888887776 66 66 88999998766 6788887776
Q ss_pred CCceEEEEeCEEEEeeCCCCCcc
Q 018550 147 DDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 147 ~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
. ++.+|+||.|+|.+|..+
T Consensus 152 ~----~~~a~~vI~adG~~S~vr 170 (388)
T PRK07608 152 Q----VLRADLVVGADGAHSWVR 170 (388)
T ss_pred C----EEEeeEEEEeCCCCchHH
Confidence 4 799999999999876543
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=106.82 Aligned_cols=152 Identities=18% Similarity=0.126 Sum_probs=86.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC-C-cccccccccchhcc-c----
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-Y-PVHSSLYKSLRVNL-P---- 74 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-~---- 74 (354)
.++|+||||||+|+++|..|+++|++|+|+|+.+.+...-+- .++.|.. . +..-..++.+.... +
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra--------~~l~~~tle~L~~lGl~~~l~~~~~~~~~~ 76 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRA--------DALNARTLQLLELVDLFDELYPLGKPCNTS 76 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccc--------eEeCHHHHHHHHhcChHHHHHhhCccceeE
Confidence 368999999999999999999999999999998654211100 0000000 0 00000011000000 0
Q ss_pred -----cccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 75 -----RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 75 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
..... ....+...............+...+.+.+.+.+.+.|++ +.++++|+++..++ +.+.+++.++.
T Consensus 77 ~~~~~g~~i~-~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~-~~v~v~~~~g~-- 150 (487)
T PRK07190 77 SVWANGKFIS-RQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQ-AGCLTTLSNGE-- 150 (487)
T ss_pred EEecCCceEe-eccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeeEEEECCCc--
Confidence 00000 000000000000000001123456777888888888888 99999999999877 66777766543
Q ss_pred eEEEEeCEEEEeeCCCCCcc
Q 018550 150 VEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~ 169 (354)
++.+++||.|+|.+|..+
T Consensus 151 --~v~a~~vVgADG~~S~vR 168 (487)
T PRK07190 151 --RIQSRYVIGADGSRSFVR 168 (487)
T ss_pred --EEEeCEEEECCCCCHHHH
Confidence 899999999999766544
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.9e-11 Score=107.36 Aligned_cols=158 Identities=22% Similarity=0.202 Sum_probs=83.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc--------ceeecCCCCC--CCCCCCCCCCCcccccccccch
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--------GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLR 70 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g--------g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 70 (354)
|+++|+||||||+|+++|..|+++|++|+|+|+.+.+. ......+... ...+++...-.-..........
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 56899999999999999999999999999999976431 0000000000 0001110000000000000000
Q ss_pred hccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
........ .+.+...... ........++..+.+.+.+.+.. .+++ ++++++|++++.++ +.+.+++.++.
T Consensus 82 ~~~~~~~~---~~~~~~~~~~-~~~~g~~~~~~~l~~~l~~~~~~~~g~~--i~~~~~v~~~~~~~-~~~~v~~~~g~-- 152 (392)
T PRK09126 82 VLNGRSPF---ALTFDARGRG-ADALGYLVPNHLIRRAAYEAVSQQDGIE--LLTGTRVTAVRTDD-DGAQVTLANGR-- 152 (392)
T ss_pred EEcCCCCc---eeEeehhhcC-CCcceEEEeHHHHHHHHHHHHhhCCCcE--EEcCCeEEEEEEcC-CeEEEEEcCCC--
Confidence 00000000 0000000000 00000112345566666555543 4777 99999999998776 67788777664
Q ss_pred eEEEEeCEEEEeeCCCCCcc
Q 018550 150 VEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~ 169 (354)
++.+|+||.|+|.+|..+
T Consensus 153 --~~~a~~vI~AdG~~S~vr 170 (392)
T PRK09126 153 --RLTARLLVAADSRFSATR 170 (392)
T ss_pred --EEEeCEEEEeCCCCchhh
Confidence 899999999999755443
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.8e-11 Score=108.18 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=88.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccc-----eeecCCCC-C-CCCCCCCCCCCcccccccccchhc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGG-----SWIYTSET-E-SDPLGVDPNRYPVHSSLYKSLRVN 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg-----~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 72 (354)
+++|+||||||+|+++|..|+++| ++|+|+|+.+.... .....++. . ...+++...-. ........+...
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~-~~~~~~~~~~~~ 79 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIA-PEAQPITDMVIT 79 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhh-hhcCcccEEEEE
Confidence 478999999999999999999995 99999999754210 00000000 0 01111110000 000000000000
Q ss_pred cccc--cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 73 LPRE--LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 73 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.... ......+.+... ............+..+.+.+.+.+.+.+++ ++++++|++++.++ +.+.+++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g~--- 152 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGE-VEPGEPFAHMVENRVLINALRKRAEALGID--LREATSVTDFETRD-EGVTVTLSDGS--- 152 (403)
T ss_pred eCCCCCCCccceEEeccc-ccCCCccEEEeEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CEEEEEECCCC---
Confidence 0000 000000000000 000000001235688889998888888888 99999999998876 77888876654
Q ss_pred EEEEeCEEEEeeCCCCCcc
Q 018550 151 EEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~ 169 (354)
++.+|.||.|+|.+|..+
T Consensus 153 -~~~ad~vI~AdG~~S~vr 170 (403)
T PRK07333 153 -VLEARLLVAADGARSKLR 170 (403)
T ss_pred -EEEeCEEEEcCCCChHHH
Confidence 789999999999766533
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.6e-10 Score=105.48 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCCcc
Q 018550 100 PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
.++..+.+.+.+.+.+. +++ ++++++++++..++ +.+++++.+ .++...++.+|+||.|+|.+|..+
T Consensus 123 i~q~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR 191 (545)
T PRK06126 123 IPQKYLEPILLEHAAAQPGVT--LRYGHRLTDFEQDA-DGVTATVEDLDGGESLTIRADYLVGCDGARSAVR 191 (545)
T ss_pred CCHHHHHHHHHHHHHhCCCce--EEeccEEEEEEECC-CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHH
Confidence 34466778888887764 677 99999999999876 666776655 223345889999999999877544
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-10 Score=77.15 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=67.1
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+|+|||||+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~------------------------------------------ 38 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGF------------------------------------------ 38 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTS------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhc------------------------------------------
Confidence 68999999999999999999999999999987542000
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
. .++..++.+.+++.|++ +++++.+.++..++++ ++|++++|
T Consensus 39 ---~---------------~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~~-~~V~~~~g 80 (80)
T PF00070_consen 39 ---D---------------PDAAKILEEYLRKRGVE--VHTNTKVKEIEKDGDG-VEVTLEDG 80 (80)
T ss_dssp ---S---------------HHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTS-EEEEEETS
T ss_pred ---C---------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCE-EEEEEecC
Confidence 0 77888999999999999 9999999999998834 66777764
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=104.16 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=85.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc---eeecCCCCC--CCCCCCCCCCCcccccccccchhcccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
++|+|||||++|+++|..|++.|++|+|+|+.+.+.. .....++.. ...+++...- .........+....+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~-~~~~~~~~~~~~~~~~g~ 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGI-KNAGQILSTMNLLDDKGT 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHH-HhcCCcccceeEEcCCCC
Confidence 4899999999999999999999999999999875431 111110000 0001110000 000000000000000000
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
.+...++.. ........+..+.+.+.+.+. ..+ ++++++|++++.++ +.+.+++.++. ++.+|.
T Consensus 80 -~~~~~~~~~------~~~~~~i~R~~l~~~L~~~~~--~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~~~~ 143 (373)
T PRK06753 80 -LLNKVKLKS------NTLNVTLHRQTLIDIIKSYVK--EDA--IFTGKEVTKIENET-DKVTIHFADGE----SEAFDL 143 (373)
T ss_pred -EEeeccccc------CCccccccHHHHHHHHHHhCC--Cce--EEECCEEEEEEecC-CcEEEEECCCC----EEecCE
Confidence 000000000 001112455777777766654 234 89999999998766 77888887764 789999
Q ss_pred EEEeeCCCCCccc
Q 018550 158 VVVCNGHFSVPRL 170 (354)
Q Consensus 158 vIlAtG~~s~~~~ 170 (354)
||.|+|.+|.-+.
T Consensus 144 vigadG~~S~vR~ 156 (373)
T PRK06753 144 CIGADGIHSKVRQ 156 (373)
T ss_pred EEECCCcchHHHH
Confidence 9999998776654
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-10 Score=105.83 Aligned_cols=161 Identities=21% Similarity=0.255 Sum_probs=83.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee---ecCCCCC--CCCCCCCCCCCcccccccccchhcccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW---IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR 75 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (354)
+.+||+|||||++|+++|..|+++|++|+|+|+.+...... ...+... ...++..+.-.-.....+..+......
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 35799999999999999999999999999999975431100 0000000 000111100000000000000000000
Q ss_pred ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcE-EEEEeecCCceEEE
Q 018550 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEE 153 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~~ 153 (354)
......++. .. ........+..+..+.+.+.+.+.+. +++ +.++++++++..++ +.. .+.+...++ +.++
T Consensus 85 ~~~~~~~~~--~~--~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~-~~v~~v~~~~~~g-~~~i 156 (407)
T PRK06185 85 RTVTLADFS--RL--PTPYPYIAMMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEG-GRVTGVRARTPDG-PGEI 156 (407)
T ss_pred eEEEecchh--hc--CCCCCcEEEeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeC-CEEEEEEEEcCCC-cEEE
Confidence 000000000 00 00000011234467778888777664 677 88999999998876 433 244432211 1478
Q ss_pred EeCEEEEeeCCCCCcc
Q 018550 154 TFDAVVVCNGHFSVPR 169 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~~ 169 (354)
.+|.||.|+|.+|.-+
T Consensus 157 ~a~~vI~AdG~~S~vr 172 (407)
T PRK06185 157 RADLVVGADGRHSRVR 172 (407)
T ss_pred EeCEEEECCCCchHHH
Confidence 9999999999876433
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6e-10 Score=102.50 Aligned_cols=153 Identities=20% Similarity=0.159 Sum_probs=86.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCcccccccccchhcc-ccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL-PRE 76 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 76 (354)
++|+|||||++|+++|..|+++|++|+|+|+.+.+. ......++.. ...++ +++.+.... +..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lg-----------l~~~l~~~~~~~~ 69 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELG-----------LLDALDAIGIRTR 69 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCC-----------CHHHHHhhCCCCc
Confidence 489999999999999999999999999999976542 1111110000 00011 111111000 000
Q ss_pred ccccc--------CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCC-cceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 77 LMGFQ--------AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGV-DQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 77 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
.+.+. ..+.... ...........+..+.+.+.+.+.+ .+. . ++++++|+++..++ +...+.+.++
T Consensus 70 ~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~--i~~~~~v~~~~~~~-~~~~~~~~~~ 144 (413)
T PRK07538 70 ELAYFNRHGQRIWSEPRGLA--AGYDWPQYSIHRGELQMLLLDAVRERLGPDA--VRTGHRVVGFEQDA-DVTVVFLGDR 144 (413)
T ss_pred ceEEEcCCCCEEeeccCCcc--cCCCCceEEEEHHHHHHHHHHHHHhhcCCcE--EEcCCEEEEEEecC-CceEEEEecc
Confidence 00000 0000000 0000011124567888888777654 453 4 89999999998776 5556665543
Q ss_pred C-CceEEEEeCEEEEeeCCCCCcccC
Q 018550 147 D-DVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 147 ~-~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
. +...++.+|.||.|+|.+|..+..
T Consensus 145 ~~g~~~~~~adlvIgADG~~S~vR~~ 170 (413)
T PRK07538 145 AGGDLVSVRGDVLIGADGIHSAVRAQ 170 (413)
T ss_pred CCCccceEEeeEEEECCCCCHHHhhh
Confidence 2 223589999999999987765543
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-10 Score=104.18 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=83.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCC--CCCCCCCCCCCCC--Ccccccccccchhc--ccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS--ETESDPLGVDPNR--YPVHSSLYKSLRVN--LPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~ 75 (354)
.++|+||||||+|+++|..|++.|++|+|||+.+.. .+...+ +.. ...+.|.. .+..-..++.+... .+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~--~~~~~~~~~~r--~~~l~~~~~~~L~~lG~~~~~~~~~~~~~ 78 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPK--AFEPSQPMDIR--VSAISQTSVDLLESLGAWSSIVAMRVCPY 78 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcc--cCCCCCCCCcc--EEEecHHHHHHHHHCCCchhhhHhhCCcc
Confidence 369999999999999999999999999999986411 000000 000 00001100 00000011111100 000
Q ss_pred -ccccccC----CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 76 -ELMGFQA----YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 76 -~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.+..+.. ..+........... ....+..+...+.+.+... +++ +++++++++++.++ +.+++++.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~i~~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~-~~~~v~~~~g~-- 152 (384)
T PRK08849 79 KRLETWEHPECRTRFHSDELNLDQLG-YIVENRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSA-EGNRVTLESGA-- 152 (384)
T ss_pred ceEEEEeCCCceEEecccccCCCccE-EEEEcHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcC-CeEEEEECCCC--
Confidence 0000000 00000000000000 0112245555565555543 566 89999999999876 77888888764
Q ss_pred eEEEEeCEEEEeeCCCCCccc
Q 018550 150 VEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.+|.||.|+|.+|.-+.
T Consensus 153 --~~~~~lvIgADG~~S~vR~ 171 (384)
T PRK08849 153 --EIEAKWVIGADGANSQVRQ 171 (384)
T ss_pred --EEEeeEEEEecCCCchhHH
Confidence 8999999999998776554
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-10 Score=93.66 Aligned_cols=148 Identities=23% Similarity=0.355 Sum_probs=84.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccc------
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE------ 76 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 76 (354)
-+|+|||+|++|++||..|+..|++|++|||+..+||.+....-.. -.+..-.+...-....+..+.....+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~-g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG-GRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC-ccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 3699999999999999999999999999999998988775421000 000000000000111111111111111
Q ss_pred ---cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE
Q 018550 77 ---LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (354)
++.+.+-..... ..+.....-|....+.+++. .+++ |+++++|+.+.+.+ +.|+++..+++ ...
T Consensus 81 ~~~~~~~~~~~~~~~--~d~~pyvg~pgmsalak~LA-----tdL~--V~~~~rVt~v~~~~-~~W~l~~~~g~---~~~ 147 (331)
T COG3380 81 TPAVWTFTGDGSPPR--GDEDPYVGEPGMSALAKFLA-----TDLT--VVLETRVTEVARTD-NDWTLHTDDGT---RHT 147 (331)
T ss_pred cccccccccCCCCCC--CCCCccccCcchHHHHHHHh-----ccch--hhhhhhhhhheecC-CeeEEEecCCC---ccc
Confidence 111110000000 00000112233334443222 2455 88999999999987 99999998876 478
Q ss_pred EeCEEEEeeCC
Q 018550 154 TFDAVVVCNGH 164 (354)
Q Consensus 154 ~~d~vIlAtG~ 164 (354)
.+|.||+|.-.
T Consensus 148 ~~d~vvla~PA 158 (331)
T COG3380 148 QFDDVVLAIPA 158 (331)
T ss_pred ccceEEEecCC
Confidence 99999999874
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-10 Score=104.05 Aligned_cols=140 Identities=17% Similarity=0.144 Sum_probs=82.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||||+++|..|++.|++|+++|+...+...+-.+.. .....+..+. + ...|.......+..
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~-~l~~lgl~~~---i-~~~w~~~~v~~~~~----- 177 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWED-EFKDLGLEDC---I-EHVWRDTIVYLDDD----- 177 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchh-HHHhcCcHHH---H-HhhcCCcEEEecCC-----
Confidence 479999999999999999999999999999985333211100000 0000000000 0 00011000000000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEE-EEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV-KSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v-~~~~g~~~~~~~~~d~vIl 160 (354)
.. . ..........+..+.+.+.+.+.+.+++ + ++++|+++..++ +.+.+ +..++. ++.++.||+
T Consensus 178 -----~~-~-~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~--~-~~~~V~~I~~~~-~~~~vv~~~dG~----~i~A~lVI~ 242 (529)
T PLN02697 178 -----KP-I-MIGRAYGRVSRTLLHEELLRRCVESGVS--Y-LSSKVDRITEAS-DGLRLVACEDGR----VIPCRLATV 242 (529)
T ss_pred -----ce-e-eccCcccEEcHHHHHHHHHHHHHhcCCE--E-EeeEEEEEEEcC-CcEEEEEEcCCc----EEECCEEEE
Confidence 00 0 0001112246688889999888888887 5 678999998765 55543 444443 799999999
Q ss_pred eeCCCC
Q 018550 161 CNGHFS 166 (354)
Q Consensus 161 AtG~~s 166 (354)
|+|.++
T Consensus 243 AdG~~S 248 (529)
T PLN02697 243 ASGAAS 248 (529)
T ss_pred CCCcCh
Confidence 999876
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.2e-10 Score=100.89 Aligned_cols=160 Identities=23% Similarity=0.286 Sum_probs=85.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc------cceeecCCCCC-CCCCCCCCCCCcccccccccchhcc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~------gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
|+++|+||||||+|+++|..|++.|++|+|+|+.+.. ++......... ...+|+...-. ........+....
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~-~~~~~~~~~~~~~ 79 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMD-REGLVHDGIELRF 79 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHH-hcCCccCcEEEEE
Confidence 6789999999999999999999999999999997642 11111000000 01112110000 0000000000000
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (354)
.... ..+++.... .......+ .+..+.+.+.+.+...+++ +++++++++++..+++...++... +++..++
T Consensus 80 ~g~~---~~~~~~~~~--~~~~~~~~-~~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~~~~~~V~~~~-~G~~~~i 150 (392)
T PRK08243 80 DGRR---HRIDLTELT--GGRAVTVY-GQTEVTRDLMAARLAAGGP--IRFEASDVALHDFDSDRPYVTYEK-DGEEHRL 150 (392)
T ss_pred CCEE---EEecccccc--CCceEEEe-CcHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecCCCceEEEEEc-CCeEEEE
Confidence 0000 011111000 00000011 2345666666666667887 999999999986222555666632 1223578
Q ss_pred EeCEEEEeeCCCCCccc
Q 018550 154 TFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~~~ 170 (354)
++|+||.|+|.+|..+.
T Consensus 151 ~ad~vVgADG~~S~vR~ 167 (392)
T PRK08243 151 DCDFIAGCDGFHGVSRA 167 (392)
T ss_pred EeCEEEECCCCCCchhh
Confidence 99999999998776654
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.7e-10 Score=101.54 Aligned_cols=159 Identities=15% Similarity=0.112 Sum_probs=84.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc---eeecCCCCC--CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
+++|+|||||++|+++|..|++.|++|+|+|+.+.+.. .....+... ...+++.... .........+....+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~-~~~~~~~~~~~~~~~~g 79 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAA-QEHKTRIRGASFVDRDG 79 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHH-HhhccCccceEEEeCCC
Confidence 46899999999999999999999999999999765421 111111000 0111111000 00000000000000000
Q ss_pred cccccCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 77 LMGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
..+........ ......... ...+.++.+.+.+.+ ..+++ ++++++|++++.++ +..+++..++. ++.+
T Consensus 80 -~~~~~~~~~~~-~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~dg~----~~~a 149 (372)
T PRK05868 80 -NELFRDTESTP-TGGPVNSPDIELLRDDLVELLYGAT-QPSVE--YLFDDSISTLQDDG-DSVRVTFERAA----AREF 149 (372)
T ss_pred -CEEeecccccc-cCCCCCCceEEEEHHHHHHHHHHhc-cCCcE--EEeCCEEEEEEecC-CeEEEEECCCC----eEEe
Confidence 00000000000 000000000 112345555544322 23566 89999999998765 77888888875 7899
Q ss_pred CEEEEeeCCCCCcccC
Q 018550 156 DAVVVCNGHFSVPRLA 171 (354)
Q Consensus 156 d~vIlAtG~~s~~~~p 171 (354)
|.||.|+|.+|.-+..
T Consensus 150 dlvIgADG~~S~vR~~ 165 (372)
T PRK05868 150 DLVIGADGLHSNVRRL 165 (372)
T ss_pred CEEEECCCCCchHHHH
Confidence 9999999987776653
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-10 Score=104.22 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=85.8
Q ss_pred eEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhcc-cccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVNL-PRELMG 79 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~ 79 (354)
||+||||||+|+++|..|+++| ++|+|+|+.+.+.......+.. .++.|.. .+..-.+++.+.... +.....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~----~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARS----LALSYGSKQILEKLGLWPKLAPFATPILDIH 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCee----EeccHHHHHHHHHCCChhhhHhhcCccceEE
Confidence 6999999999999999999999 9999999976432110000000 0111100 000000111110000 000000
Q ss_pred ccCC-CCCccCCC---CCCCCC-CCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE
Q 018550 80 FQAY-PFVARNYE---GSVDLR-RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 80 ~~~~-~~~~~~~~---~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (354)
+... .+...... ...... ....+..+.+.+.+.+... +++ ++++++|+++..++ +.+++++.++. ++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~g~----~~ 149 (382)
T TIGR01984 77 VSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQ-DYVRVTLDNGQ----QL 149 (382)
T ss_pred EEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcC-CeEEEEECCCC----EE
Confidence 0000 00000000 000000 1134578888888888774 888 89899999998776 77888876654 78
Q ss_pred EeCEEEEeeCCCCCc
Q 018550 154 TFDAVVVCNGHFSVP 168 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~ 168 (354)
.+|.||.|+|.+|.-
T Consensus 150 ~ad~vV~AdG~~S~v 164 (382)
T TIGR01984 150 RAKLLIAADGANSKV 164 (382)
T ss_pred EeeEEEEecCCChHH
Confidence 999999999977653
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.2e-10 Score=104.22 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
+...+...+...+.+.|.+ +..+++|+++..++ +.|.+.+.++.+++.++.++.||+|+|.|+...
T Consensus 153 d~~rl~~~l~~~a~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l 218 (502)
T PRK13369 153 DDARLVVLNALDAAERGAT--ILTRTRCVSARREG-GLWRVETRDADGETRTVRARALVNAAGPWVTDV 218 (502)
T ss_pred cHHHHHHHHHHHHHHCCCE--EecCcEEEEEEEcC-CEEEEEEEeCCCCEEEEEecEEEECCCccHHHH
Confidence 3366666777777888988 99999999998876 678888777654456799999999999877543
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-10 Score=89.05 Aligned_cols=137 Identities=19% Similarity=0.201 Sum_probs=84.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc-ccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM-GFQ 81 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (354)
.||+|+||||+|++||+.|++.|.+|++||++-.+||.+... ..+++.+....|...+ +-.
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~G------------------Gmlf~~iVv~~~a~~iL~e~ 92 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGG------------------GMLFNKIVVREEADEILDEF 92 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccccc------------------ccccceeeecchHHHHHHHh
Confidence 589999999999999999999999999999988887554331 1123333222222111 111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-------EEEEEeecC-CceEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-------WKVKSRKKD-DVVEEE 153 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-------~~v~~~~g~-~~~~~~ 153 (354)
+.++... .....-.+..++...+...+-+.|.+ +...+.|.++...++.. |+.....+. -....+
T Consensus 93 gI~ye~~-----e~g~~v~ds~e~~skl~~~a~~aGak--i~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i 165 (262)
T COG1635 93 GIRYEEE-----EDGYYVADSAEFASKLAARALDAGAK--IFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTI 165 (262)
T ss_pred CCcceec-----CCceEEecHHHHHHHHHHHHHhcCce--eeecceEEEEEEecCCceEEEEEecchhhhcccccCccee
Confidence 2333221 01111123366777777777777877 88899999998766321 222211110 002478
Q ss_pred EeCEEEEeeCC
Q 018550 154 TFDAVVVCNGH 164 (354)
Q Consensus 154 ~~d~vIlAtG~ 164 (354)
++++||-|||+
T Consensus 166 ~a~~VvDaTGH 176 (262)
T COG1635 166 RAKAVVDATGH 176 (262)
T ss_pred eEEEEEeCCCC
Confidence 99999999997
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=6e-10 Score=101.09 Aligned_cols=157 Identities=10% Similarity=0.161 Sum_probs=86.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhcc-ccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVNL-PRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~ 78 (354)
+.+|+||||||+|+++|..|++.|++|+|+|+.+.........+.. .++.|.. .+..-..++.+.... +-..+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~----~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 76 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRT----TALTPHSKNFLFSIDIWEELEKFVAEMQDI 76 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceE----EEeCHHHHHHHHHCCcHHHHHhhcCCCcEE
Confidence 4689999999999999999999999999999863211110000000 0111110 000000111111000 00000
Q ss_pred cccCCC-CCccCCCCCC-C-CCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 79 GFQAYP-FVARNYEGSV-D-LRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 79 ~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
.+.+.. .......... . ......+.++.+.+.+.+.+.+ ++ ++++++++++..++ +.+.++..++ ++.
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~~-----~~~ 148 (374)
T PRK06617 77 YVVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLIT--LIDNNQYQEVISHN-DYSIIKFDDK-----QIK 148 (374)
T ss_pred EEEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcE--EECCCeEEEEEEcC-CeEEEEEcCC-----EEe
Confidence 000000 0000000000 0 0011356888888888887764 66 78899999998876 6777777542 799
Q ss_pred eCEEEEeeCCCCCccc
Q 018550 155 FDAVVVCNGHFSVPRL 170 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~ 170 (354)
+|.||.|+|.+|.-+.
T Consensus 149 adlvIgADG~~S~vR~ 164 (374)
T PRK06617 149 CNLLIICDGANSKVRS 164 (374)
T ss_pred eCEEEEeCCCCchhHH
Confidence 9999999998776664
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.4e-10 Score=101.17 Aligned_cols=149 Identities=23% Similarity=0.181 Sum_probs=84.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCC--CCcccccccccchhcc-cccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN--RYPVHSSLYKSLRVNL-PRELMG 79 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~ 79 (354)
++|+|||||++|+++|..|++.|++|+|||+.+..... .. .++.+. ..+..-..++.+.... +...+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~--r~-------~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~ 78 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADL--RT-------TALLGPSIRFLERLGLWARLAPHAAPLQSMR 78 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCc--ch-------hhCcHHHHHHHHHhCchhhhHhhcceeeEEE
Confidence 58999999999999999999999999999997543210 00 000000 0000001111111000 000000
Q ss_pred ccCC----------CCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 80 FQAY----------PFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 80 ~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
+.+. .+... ........ ...+..+.+.+.+.+.+.+.. .+++++|++++.++ +.+++++.++.
T Consensus 79 ~~~~~g~~~~~~~~~~~~~--~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~~~g~- 152 (388)
T PRK07494 79 IVDATGRLIRAPEVRFRAA--EIGEDAFGYNIPNWLLNRALEARVAELPNI--TRFGDEAESVRPRE-DEVTVTLADGT- 152 (388)
T ss_pred EEeCCCCCCCCceEEEcHH--hcCCCccEEEeEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcC-CeEEEEECCCC-
Confidence 0000 00000 00000001 134467778888777766544 47789999998876 77888877654
Q ss_pred ceEEEEeCEEEEeeCCCCCcc
Q 018550 149 VVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~ 169 (354)
.+.+|.||.|+|.+|..+
T Consensus 153 ---~~~a~~vI~AdG~~S~vr 170 (388)
T PRK07494 153 ---TLSARLVVGADGRNSPVR 170 (388)
T ss_pred ---EEEEeEEEEecCCCchhH
Confidence 799999999999766543
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.9e-10 Score=101.22 Aligned_cols=80 Identities=19% Similarity=0.062 Sum_probs=58.2
Q ss_pred EEEEccCCCHHHHH-HHHh----ccCCEEEEEEecCC--------ccccccCCCCC-CeEEecceeEEecC-CcE---EE
Q 018550 200 VILIGHYASGLDIK-RDLA----GFAKEVHIASRSVA--------DETHEKQPGYD-NMWLHSMVERANED-GTV---VF 261 (354)
Q Consensus 200 v~ViG~G~~g~e~a-~~l~----~~g~~v~~~~r~~~--------~~~~~~l~~~~-~~~~~~~v~~v~~~-~~v---~~ 261 (354)
=+|++.+.+|+|.+ ..++ +.|.+|+++...++ +.+.+.+.+.+ +++.++.|.+++.+ +.+ ..
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~ 297 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWT 297 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 37889999999998 5554 46999999988775 22334444445 89999999998743 332 23
Q ss_pred ccC--cEEecCEEEEcccCC
Q 018550 262 RNG--RVVSADVIMHCTGLT 279 (354)
Q Consensus 262 ~~g--~~~~~D~vi~a~G~~ 279 (354)
.++ ..+.+|.+|+|+|..
T Consensus 298 ~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 298 RNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred eCCceEEEECCEEEEeCCCc
Confidence 344 358899999999986
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=103.67 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=87.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccce---eecCCCCC--CCCCCCCCCCCcccccccccchhc-ccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN-LPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 75 (354)
+++|+||||||+|+++|..|+++|++|+|||+.+.+... +...++.. ...+++...- ......+...... ...
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l-~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERM-VDKGVSWNVGKVFLRDE 101 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHH-HhhCceeeceeEEeCCC
Confidence 468999999999999999999999999999998654211 11111000 0011111000 0000000000000 000
Q ss_pred ccccccCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE
Q 018550 76 ELMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~ 153 (354)
... .++.... ...... .....+..+.+++.+.+.+. +++ +++++++++++.++ +.++++..+.++ ..++
T Consensus 102 ~~~---~~~~~~~--~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~i 172 (547)
T PRK08132 102 EVY---RFDLLPE--PGHRRPAFINLQQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHD-DGVTLTVETPDG-PYTL 172 (547)
T ss_pred eEE---EecCCCC--CCCCCCceEecCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcC-CEEEEEEECCCC-cEEE
Confidence 000 0000000 000000 01124467778888887765 566 89999999999877 677776654322 2478
Q ss_pred EeCEEEEeeCCCCCcc
Q 018550 154 TFDAVVVCNGHFSVPR 169 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~~ 169 (354)
.+|+||.|+|.+|.-+
T Consensus 173 ~ad~vVgADG~~S~vR 188 (547)
T PRK08132 173 EADWVIACDGARSPLR 188 (547)
T ss_pred EeCEEEECCCCCcHHH
Confidence 9999999999766544
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=100.74 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCCcc
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
..+...+...+.+.|.+ +..+++|+++..++ +.|.+.+.+. +++..++.++.||+|+|.|+...
T Consensus 155 ~rl~~~l~~~A~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l 219 (508)
T PRK12266 155 ARLVVLNARDAAERGAE--ILTRTRVVSARREN-GLWHVTLEDTATGKRYTVRARALVNAAGPWVKQF 219 (508)
T ss_pred HHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeC-CEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHH
Confidence 55556666667778988 89999999998766 6788877652 12235799999999999876443
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.1e-10 Score=100.37 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=84.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc------cceeecCCCCC-CCCCCCCCCCCcccccccccchhc-
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVN- 72 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~------gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 72 (354)
|.++|+|||||++|+++|..|++.|++|+|+|+.+.. +......+... ...+| +++.+...
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lG-----------l~~~l~~~~ 69 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAG-----------VDERMDREG 69 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCC-----------ChHHHHhcC
Confidence 6789999999999999999999999999999997641 11111000000 01111 11111100
Q ss_pred cccccccc------cCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEe-
Q 018550 73 LPRELMGF------QAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR- 144 (354)
Q Consensus 73 ~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~- 144 (354)
.+...+.+ ..+++... ...... ...+..+...+.+.+...+.. ++++.+++.+...+++...|+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~g~~--~~~~~~~v~~~~~~~~~~~V~~~~ 143 (390)
T TIGR02360 70 LVHEGTEIAFDGQRFRIDLKAL----TGGKTVMVYGQTEVTRDLMEAREAAGLT--TVYDADDVRLHDLAGDRPYVTFER 143 (390)
T ss_pred ceecceEEeeCCEEEEEecccc----CCCceEEEeCHHHHHHHHHHHHHhcCCe--EEEeeeeEEEEecCCCccEEEEEE
Confidence 00000000 00111100 000000 012345666676666666777 88888887776533255666664
Q ss_pred ecCCceEEEEeCEEEEeeCCCCCcccC
Q 018550 145 KKDDVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 145 ~g~~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
+|. ..++++|.||.|+|.+|.-+..
T Consensus 144 ~g~--~~~i~adlvIGADG~~S~VR~~ 168 (390)
T TIGR02360 144 DGE--RHRLDCDFIAGCDGFHGVSRAS 168 (390)
T ss_pred CCe--EEEEEeCEEEECCCCchhhHHh
Confidence 442 2478999999999988766543
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.1e-10 Score=102.53 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=83.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCCCccc---ccccccchhcc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVH---SSLYKSLRVNL 73 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~ 73 (354)
.+|+|||||++|+++|..|+++| ++|+|+|+.+.++ ......++.. ...+++.....-.. ...+.......
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 47999999999999999999998 6999999986653 1221111100 01111110000000 00000000000
Q ss_pred cc-ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 74 PR-ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 74 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
.. ....+...... .........+.++.+.+.+.+. ... ++++++|++++.++ ++++++..++. +
T Consensus 81 ~~~~~~~~~~~~~~------~~~~~~~i~R~~l~~~L~~~~~--~~~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~ 145 (414)
T TIGR03219 81 RNGSDASYLGATIA------PGVGQSSVHRADFLDALLKHLP--EGI--ASFGKRATQIEEQA-EEVQVLFTDGT----E 145 (414)
T ss_pred EecCccceeeeecc------ccCCcccCCHHHHHHHHHHhCC--Cce--EEcCCEEEEEEecC-CcEEEEEcCCC----E
Confidence 00 00000000000 0001112345667666665542 233 78899999999876 77999888765 7
Q ss_pred EEeCEEEEeeCCCCCccc
Q 018550 153 ETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~~ 170 (354)
+.+|.||+|+|.+|.-|.
T Consensus 146 ~~ad~vVgADG~~S~vR~ 163 (414)
T TIGR03219 146 YRCDLLIGADGIKSALRD 163 (414)
T ss_pred EEeeEEEECCCccHHHHH
Confidence 899999999998876543
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-10 Score=102.77 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=83.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccceee-cCCCCCCCCCCCCCCC--Ccccccccccchhcc-c
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWI-YTSETESDPLGVDPNR--YPVHSSLYKSLRVNL-P 74 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~ 74 (354)
+++|+||||||+|+++|..|+++ |++|+|+|+......... ..+.. .++.|.. .+..-.+++.+.... +
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~----~~l~~~~~~~l~~lgl~~~~~~~~~~ 78 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARA----IALAAGTCQQLARLGVWQALADCATP 78 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccc----eeccHHHHHHHHHCCChhhhHhhcCC
Confidence 47999999999999999999998 999999999522110000 00000 0000000 000001111111100 0
Q ss_pred cccccccC---C---CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecC
Q 018550 75 RELMGFQA---Y---PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKD 147 (354)
Q Consensus 75 ~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~ 147 (354)
...+.+.+ . .+...... .........+..+.+.+.+.+... +++ ++++++|+++...+ +.+.+++.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~-~~~~v~~~~g~ 154 (395)
T PRK05732 79 ITHIHVSDRGHAGFVRLDAEDYG-VPALGYVVELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQ-GSVRVTLDDGE 154 (395)
T ss_pred ccEEEEecCCCCceEEeehhhcC-CCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcC-CeEEEEECCCC
Confidence 00000000 0 00000000 000001123456667777766553 677 88899999998766 77888887664
Q ss_pred CceEEEEeCEEEEeeCCCCCc
Q 018550 148 DVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 148 ~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.+.+|+||.|+|.++.-
T Consensus 155 ----~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 155 ----TLTGRLLVAADGSHSAL 171 (395)
T ss_pred ----EEEeCEEEEecCCChhh
Confidence 78999999999976653
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.2e-10 Score=102.17 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=83.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC-CCc--cceeecCCCCCCCCCCCCCCC--Ccccccccccchhc--ccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV--GGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVN--LPR 75 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~-~~~--gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~ 75 (354)
++|+||||||+|+++|..|++.|++|+|+|+. +.. +... ..+. .++.|.. .+..-..++.+... .+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~--~~r~----~~l~~~~~~~L~~lGl~~~l~~~~~~~~ 78 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELP--DVRV----SALSRSSEHILRNLGAWQGIEARRAAPY 78 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCC--Ccce----ecccHHHHHHHHhCCchhhhhhhhCCcc
Confidence 69999999999999999999999999999985 211 1000 0000 0011100 00000111111110 000
Q ss_pred ccccccCCC-CCccCCCCC-CCCCC---CCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 76 ELMGFQAYP-FVARNYEGS-VDLRR---YPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 76 ~~~~~~~~~-~~~~~~~~~-~~~~~---~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
..+.+.+-. ......... ...+. ...+..+.+.+.+.+.+. +++ +.++++|+++..++ +.++++..++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~~~v~~~~g~-- 153 (405)
T PRK08850 79 IAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVT--LLMPARCQSIAVGE-SEAWLTLDNGQ-- 153 (405)
T ss_pred cEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeE--EEcCCeeEEEEeeC-CeEEEEECCCC--
Confidence 000000000 000000000 00000 112345666666666554 566 88999999998876 67788887764
Q ss_pred eEEEEeCEEEEeeCCCCCccc
Q 018550 150 VEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.+|+||.|+|.+|.-+.
T Consensus 154 --~~~a~lvIgADG~~S~vR~ 172 (405)
T PRK08850 154 --ALTAKLVVGADGANSWLRR 172 (405)
T ss_pred --EEEeCEEEEeCCCCChhHH
Confidence 8999999999997665443
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=98.62 Aligned_cols=162 Identities=23% Similarity=0.280 Sum_probs=89.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCccceeecCCCCCC---CC----CCCC--CCCC----------cccc
Q 018550 4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETES---DP----LGVD--PNRY----------PVHS 63 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~gg~~~~~~~~~~---~~----~~~~--~~~~----------~~~~ 63 (354)
||||||+|.+|+++|..++++| .+|+|+||.+..||......+... .. .+.. ++.. ..+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 6999999999999999999999 999999998877765444322110 00 0000 0000 0001
Q ss_pred cccccchhcccccccccc-CCCCCccC---CCCC-CC-----CCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEE
Q 018550 64 SLYKSLRVNLPRELMGFQ-AYPFVARN---YEGS-VD-----LRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133 (354)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~-~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~ 133 (354)
.+...+..+.+.....+. +.++.... .... .. .........+.+.+.+.+.+.+++ ++++++|+++..
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~--i~~~~~v~~l~~ 158 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGID--TRLNSKVEDLIQ 158 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCE--EEeCCEeeEeEE
Confidence 111111111111100001 11111000 0000 00 011123467888888888888998 999999999998
Q ss_pred eCCC-cEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 134 VESN-KWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 134 ~~~~-~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
++++ ...+...+..+....+.++.||+|+|.++.
T Consensus 159 ~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 159 DDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 6433 233444433333346789999999997664
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=96.31 Aligned_cols=135 Identities=20% Similarity=0.245 Sum_probs=84.0
Q ss_pred eEEEEcCChHHHHHHHHH--HHcCCcEEEEeeCCCcc--c--eeecCCCCCCCCCCCCCCCCcccccccccchhcccccc
Q 018550 4 HVAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVG--G--SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l--~~~g~~v~lie~~~~~g--g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
||+|||||+||+++|..| ++.|.+|+|+|+.+..+ . +|..+.. ...+ ..-.-...|+......+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~------~~~~-~~~~v~~~w~~~~v~~~~~~ 73 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEK------DLGP-LDSLVSHRWSGWRVYFPDGS 73 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccc------cccc-hHHHHheecCceEEEeCCCc
Confidence 799999999999999999 77899999999876541 1 1111100 0000 00000111221111111111
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
..... .......+..+.+++.+.+...+ . ..++.+|++|+..+ +.+.+.+.+|. ++.++.
T Consensus 74 ~~~~~------------~~Y~~i~~~~f~~~l~~~~~~~~-~--~~~~~~V~~i~~~~-~~~~v~~~~g~----~i~a~~ 133 (374)
T PF05834_consen 74 RILID------------YPYCMIDRADFYEFLLERAAAGG-V--IRLNARVTSIEETG-DGVLVVLADGR----TIRARV 133 (374)
T ss_pred eEEcc------------cceEEEEHHHHHHHHHHHhhhCC-e--EEEccEEEEEEecC-ceEEEEECCCC----EEEeeE
Confidence 00000 11123466888899888888434 3 57889999999887 67888888876 899999
Q ss_pred EEEeeCCC
Q 018550 158 VVVCNGHF 165 (354)
Q Consensus 158 vIlAtG~~ 165 (354)
||.|+|..
T Consensus 134 VvDa~g~~ 141 (374)
T PF05834_consen 134 VVDARGPS 141 (374)
T ss_pred EEECCCcc
Confidence 99999953
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=98.02 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
+...+.+.+.+.+.+.|++ +.++++|.++...+ +.+.+.+.++ ++.+|.||+|+|.|+
T Consensus 147 d~~~l~~aL~~~~~~~Gv~--i~~~~~V~~i~~~~-~~~~V~~~~g-----~i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGE--IRLGAEVTALDEHA-NGVVVRTTQG-----EYEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEecC-CeEEEEECCC-----EEEeCEEEECCCcch
Confidence 3477888888888888988 89999999998766 6677766543 689999999999865
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=96.37 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEE-EEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
+...+.+.+.+.+.+.|++ ++.+++|+++..++ +.++ |.+.++ .+.+|.||+|+|.|+..
T Consensus 145 ~~~~l~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~-~~v~gv~~~~g-----~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGVE--IRTGTEVTSIDVDG-GRVTGVRTSDG-----EIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EHHHHHHHHHHHHHHTT-E--EEESEEEEEEEEET-TEEEEEEETTE-----EEEECEEEE--GGGHHH
T ss_pred cccchhhhhHHHHHHhhhh--ccccccccchhhcc-ccccccccccc-----ccccceeEeccccccee
Confidence 3478999999999999999 99999999999988 7787 888876 59999999999976544
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-09 Score=97.98 Aligned_cols=163 Identities=19% Similarity=0.223 Sum_probs=86.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC--ccceeecCCCCC--C-CCC---C--CCCCCCc----------c
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ--VGGSWIYTSETE--S-DPL---G--VDPNRYP----------V 61 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~--~gg~~~~~~~~~--~-~~~---~--~~~~~~~----------~ 61 (354)
..||||||+|++|+++|..|++.|.+|+|+||.+. .||......+.. . .+. . ..++..+ .
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRT 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCC
Confidence 47999999999999999999999999999999763 455433322210 0 000 0 0000000 0
Q ss_pred cccccccchhcccccccccc--CCCCCccCCCCC--CCCCC--CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC
Q 018550 62 HSSLYKSLRVNLPRELMGFQ--AYPFVARNYEGS--VDLRR--YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE 135 (354)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~--~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~ 135 (354)
...+...+..+.+.....+. +.++........ ..... ......+...+.+.+++.+++ ++++++|+++..++
T Consensus 84 ~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~--i~~~t~v~~l~~~~ 161 (466)
T PRK08274 84 DEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVE--IRYDAPVTALELDD 161 (466)
T ss_pred CHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC
Confidence 00000000001100000000 111111000000 00000 011356778888888888988 99999999998755
Q ss_pred CCcE-EEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 136 SNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 136 ~~~~-~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+.. .+...+..+....+.++.||+|||.+..
T Consensus 162 -g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 162 -GRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred -CeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 433 3444322223357899999999996543
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=100.15 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=80.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC-CccceeecCCCCCCCCCCCCCCCCccc-ccccccch-------hc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLR-------VN 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~ 72 (354)
++||+|||||+||++||..+++.|.+|.|+|++. .+|+ + .|.|...... ......+. ..
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~-m-----------~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ-M-----------SCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc-c-----------CCccccccchhhHHHHHHHhcCCHHHHH
Confidence 4799999999999999999999999999999873 4443 1 1111111000 00000000 00
Q ss_pred cccccccccCCCCCccCCCCCC-CCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 73 LPRELMGFQAYPFVARNYEGSV-DLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
....... +......-.... ......++..+...+.+.+.+. ++. + ++.+|.++..+++....|.+.+|.
T Consensus 72 ~d~~giq---~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~--I-~q~~V~~Li~e~grV~GV~t~dG~--- 142 (618)
T PRK05192 72 IDKTGIQ---FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLD--L-FQGEVEDLIVENGRVVGVVTQDGL--- 142 (618)
T ss_pred HhhccCc---eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEecCCEEEEEEECCCC---
Confidence 0000000 110000000000 0111234566777777777655 666 4 567888887665233446666654
Q ss_pred EEEEeCEEEEeeCCCC
Q 018550 151 EEETFDAVVVCNGHFS 166 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s 166 (354)
.+.++.||+|||.+.
T Consensus 143 -~I~Ak~VIlATGTFL 157 (618)
T PRK05192 143 -EFRAKAVVLTTGTFL 157 (618)
T ss_pred -EEECCEEEEeeCcch
Confidence 899999999999654
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-10 Score=107.01 Aligned_cols=147 Identities=22% Similarity=0.209 Sum_probs=37.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
||||||||++|++||.++++.|.+|+|+|+.+.+||................ .......+..+...... ....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~---~~~~~gi~~e~~~~~~~----~~~~ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDE---DQVIGGIFREFLNRLRA----RGGY 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHH---HHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchh---hccCCCHHHHHHHHHhh----hccc
Confidence 7999999999999999999999999999999999987665311000000000 00001112222211111 0000
Q ss_pred CCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 84 PFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+.... ..+.. .......+...+.+.+.+.|++ +.+++.|.++..+++.-+.|.+.+..+ ..++.++.+|.||
T Consensus 74 ~~~~~----~~~~~~~~~~~~~~~~~l~~~l~e~gv~--v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaT 146 (428)
T PF12831_consen 74 PQEDR----YGWVSNVPFDPEVFKAVLDEMLAEAGVE--VLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDAT 146 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc----cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccc-ccccccccccccc
Confidence 00000 00000 1223355666777777778898 999999999998764444555544222 3689999999999
Q ss_pred CC
Q 018550 163 GH 164 (354)
Q Consensus 163 G~ 164 (354)
|.
T Consensus 147 G~ 148 (428)
T PF12831_consen 147 GD 148 (428)
T ss_dssp --
T ss_pred cc
Confidence 94
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=99.02 E-value=8e-10 Score=88.58 Aligned_cols=138 Identities=22% Similarity=0.178 Sum_probs=73.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccc-cccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE-LMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (354)
.+||+||||||+|++||+.|++.|++|.+||++..+||..... ..+++.+..+.+.. ...-
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~G------------------g~lf~~iVVq~~a~~iL~e 78 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGG------------------GMLFNKIVVQEEADEILDE 78 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-------------------CTT---EEEETTTHHHHHH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccc------------------ccccchhhhhhhHHHHHHh
Confidence 4799999999999999999999999999999988887654331 11222222222111 0011
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcE-EEEEee------cC-CceEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRK------KD-DVVEE 152 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~------g~-~~~~~ 152 (354)
.+.++... .......+..++...+...+-+.|.+ +...+.|.++...+++.. .+..+- +- -....
T Consensus 79 lgi~y~~~-----~~g~~v~d~~~~~s~L~s~a~~aGak--ifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~ 151 (230)
T PF01946_consen 79 LGIPYEEY-----GDGYYVADSVEFTSTLASKAIDAGAK--IFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLT 151 (230)
T ss_dssp HT---EE------SSEEEES-HHHHHHHHHHHHHTTTEE--EEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EE
T ss_pred CCceeEEe-----CCeEEEEcHHHHHHHHHHHHhcCCCE--EEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcce
Confidence 12222211 00001123356666666666557887 888899999887652111 111111 00 01258
Q ss_pred EEeCEEEEeeCC
Q 018550 153 ETFDAVVVCNGH 164 (354)
Q Consensus 153 ~~~d~vIlAtG~ 164 (354)
+++++||-|||+
T Consensus 152 i~ak~ViDaTGH 163 (230)
T PF01946_consen 152 IRAKVVIDATGH 163 (230)
T ss_dssp EEESEEEE---S
T ss_pred EEEeEEEeCCCC
Confidence 999999999997
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.1e-09 Score=101.38 Aligned_cols=166 Identities=17% Similarity=0.115 Sum_probs=87.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCcc---ceeecCCCCC--CCCCCCCCCC----Ccc-cccccccch
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNR----YPV-HSSLYKSLR 70 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~g---g~~~~~~~~~--~~~~~~~~~~----~~~-~~~~~~~~~ 70 (354)
+.+|+||||||+|+++|..|++. |++|+|||+.+... ......++.. ...+|+...- ... ....|..-.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 46899999999999999999995 99999999975431 1111111000 0111111000 000 000000000
Q ss_pred hccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC--CcEEEEEeec--
Q 018550 71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKK-- 146 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~--~~~~v~~~~g-- 146 (354)
...........+..... ..........++..+.+.+.+.+.+.+....+.+++++++++.+++ ...++++++.
T Consensus 112 -~~~~~i~r~~~~~~~~~--~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~ 188 (634)
T PRK08294 112 -ADPSTIVRTGRVQDTED--GLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG 188 (634)
T ss_pred -ccccceeccccccccCC--CCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC
Confidence 00000000000000000 0000011123456678888888877665323788999999987642 3467777643
Q ss_pred --CCceEEEEeCEEEEeeCCCCCccc
Q 018550 147 --DDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 147 --~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.++++++|+||.|+|..|.-|.
T Consensus 189 ~~~g~~~tv~A~~lVGaDGa~S~VR~ 214 (634)
T PRK08294 189 EHEGEEETVRAKYVVGCDGARSRVRK 214 (634)
T ss_pred CCCCceEEEEeCEEEECCCCchHHHH
Confidence 233468999999999998777664
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.3e-09 Score=93.42 Aligned_cols=99 Identities=24% Similarity=0.364 Sum_probs=78.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~----------------------------------------- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL----------------------------------------- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh-----------------------------------------
Confidence 689999999999999999999999999999865431000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
++ ..+...+.+.+++.+++ +.+++++.++..++ +.+.+.+.++. ++.+|.||+|+
T Consensus 181 ----------------~~--~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~vI~a~ 235 (377)
T PRK04965 181 ----------------MP--PEVSSRLQHRLTEMGVH--LLLKSQLQGLEKTD-SGIRATLDSGR----SIEVDAVIAAA 235 (377)
T ss_pred ----------------CC--HHHHHHHHHHHHhCCCE--EEECCeEEEEEccC-CEEEEEEcCCc----EEECCEEEECc
Confidence 00 45667777888888988 89999999998765 66777777664 89999999999
Q ss_pred CCCCCcc
Q 018550 163 GHFSVPR 169 (354)
Q Consensus 163 G~~s~~~ 169 (354)
| ..|+
T Consensus 236 G--~~p~ 240 (377)
T PRK04965 236 G--LRPN 240 (377)
T ss_pred C--CCcc
Confidence 9 4554
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.4e-09 Score=95.09 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
....+...+.+.+.+.+++ ++.+++|+++...+ +.+.+.+.++ ++.+|.||+|+|.|+....+
T Consensus 147 ~p~~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 147 RPELAIKAHLRLAREAGAE--LLFNEPVTAIEADG-DGVTVTTADG-----TYEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred cHHHHHHHHHHHHHHCCCE--EECCCEEEEEEeeC-CeEEEEeCCC-----EEEeeEEEEecCcchhhhcc
Confidence 3466667677777777888 89999999999876 6777777654 68999999999987654433
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=97.00 Aligned_cols=150 Identities=14% Similarity=0.106 Sum_probs=84.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC----CcEEEEeeCCCccce-----eecCCCCC--CCCCCCCCCCCcccccccccch
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGEQVGGS-----WIYTSETE--SDPLGVDPNRYPVHSSLYKSLR 70 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g----~~v~lie~~~~~gg~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 70 (354)
.++|+||||||+|+++|..|+++| ++|+|+|+.+..... ...++... ...+++-+.. ...+..+.
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~----~~~~~~~~ 86 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPAD----ATPIEHIH 86 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhc----CCcccEEE
Confidence 579999999999999999999987 479999996432100 00000000 0111111110 00000000
Q ss_pred hccccccccccCCCCCccCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 71 VNLPRELMGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.... ...+...+..... ...... ...+..+.+.+.+.+...+++ +.+++++++++.+. +.++++..++++
T Consensus 87 ~~~~-~~~g~~~~~~~~~----~~~~~g~~v~r~~l~~~L~~~~~~~g~~--~~~~~~v~~~~~~~-~~v~v~~~~~~g- 157 (398)
T PRK06996 87 VSQR-GHFGRTLIDRDDH----DVPALGYVVRYGSLVAALARAVRGTPVR--WLTSTTAHAPAQDA-DGVTLALGTPQG- 157 (398)
T ss_pred EecC-CCCceEEeccccc----CCCcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeeeeeeecC-CeEEEEECCCCc-
Confidence 0000 0000000000000 000001 134578889999888888877 89999999998776 778888775533
Q ss_pred eEEEEeCEEEEeeCC
Q 018550 150 VEEETFDAVVVCNGH 164 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~ 164 (354)
.+++.+|+||.|+|.
T Consensus 158 ~~~i~a~lvIgADG~ 172 (398)
T PRK06996 158 ARTLRARIAVQAEGG 172 (398)
T ss_pred ceEEeeeEEEECCCC
Confidence 247999999999995
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=100.12 Aligned_cols=162 Identities=12% Similarity=0.125 Sum_probs=86.2
Q ss_pred CeEEEEcCChHHHHHHHHHHH----cCCcEEEEeeCCCccce---eecCCCC-CCCCCCCCCCC--Ccccccccccchhc
Q 018550 3 RHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGS---WIYTSET-ESDPLGVDPNR--YPVHSSLYKSLRVN 72 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~----~g~~v~lie~~~~~gg~---~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~ 72 (354)
+||+||||||+|+++|..|++ .|++|+|||+.+.+... +...... ...-.++.|.. .+..-..++.+...
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999999 89999999995422110 0000000 00000111110 00001112222110
Q ss_pred --cccccccccCCCC-CccCCCCCCCCC---CCCCHHHHHHHHHHHHHHhC---CcceEEeceEEEEEEEe------CCC
Q 018550 73 --LPRELMGFQAYPF-VARNYEGSVDLR---RYPGHEEVLRYLQNFAREFG---VDQVVRLHTEVLNARLV------ESN 137 (354)
Q Consensus 73 --~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~---~~~~v~~~~~v~~i~~~------~~~ 137 (354)
.+...+.+.+-.. ............ ....+..+.+.+.+.+.+.+ ++ ++++++|++++.. ++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~--i~~~~~v~~i~~~~~~~~~~~~ 158 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVK--ILNPARLISVTIPSKYPNDNSN 158 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeE--EecCCeeEEEEeccccccCCCC
Confidence 0000000000000 000000000001 11345677788888777664 56 8999999999753 125
Q ss_pred cEEEEEeecCCceEEEEeCEEEEeeCCCCCccc
Q 018550 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 138 ~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
.++++..+++ ++.+|+||.|+|.+|.-+.
T Consensus 159 ~v~v~~~~g~----~i~a~llVgADG~~S~vR~ 187 (437)
T TIGR01989 159 WVHITLSDGQ----VLYTKLLIGADGSNSNVRK 187 (437)
T ss_pred ceEEEEcCCC----EEEeeEEEEecCCCChhHH
Confidence 6777777764 8999999999998776664
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.1e-09 Score=97.54 Aligned_cols=163 Identities=18% Similarity=0.186 Sum_probs=87.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCC---C----CCCCC--CCCCc----------cc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES---D----PLGVD--PNRYP----------VH 62 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~---~----~~~~~--~~~~~----------~~ 62 (354)
.+||||||+|.+|+++|..+++.|.+|+|+||.+..||......+..+ . ..+.. ++..+ .+
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d 140 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND 140 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 468999999999999999999999999999998877765433221110 0 00000 00000 00
Q ss_pred ccccccchhcccccccccc--CCCCCccC-CCCC-C---C--CCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEE
Q 018550 63 SSLYKSLRVNLPRELMGFQ--AYPFVARN-YEGS-V---D--LRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133 (354)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~-~---~--~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~ 133 (354)
..+...+..+.+.....+. +.++.... .... . . .........+...+.+.+.+.+++ +.++++++++..
T Consensus 141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~~ 218 (506)
T PRK06481 141 KALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIP--LFVNADVTKITE 218 (506)
T ss_pred HHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCe--EEeCCeeEEEEe
Confidence 0011111111111000000 11111000 0000 0 0 001112245777778888888888 999999999986
Q ss_pred eCCCcE-EEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 134 VESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 134 ~~~~~~-~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
++ +.. .+.....++....+.++.||+|+|.+..
T Consensus 219 ~~-g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 219 KD-GKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred cC-CEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 54 432 2333322223357899999999996543
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.4e-09 Score=92.39 Aligned_cols=60 Identities=23% Similarity=0.296 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
.++...+.+.+.+.|.. ++++++|+.|++.+++.+.+.+.+|+ ++++++.||.|.|..+.
T Consensus 153 ~~~t~~l~e~a~~~g~~--i~ln~eV~~i~~~~dg~~~~~~~~g~---~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 153 GELTRALAEEAQANGVE--LRLNTEVTGIEKQSDGVFVLNTSNGE---ETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHHHcCCE--EEecCeeeEEEEeCCceEEEEecCCc---EEEEeeEEEECCchhHH
Confidence 56777777788888988 99999999999988345677777764 12999999999997543
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=92.91 Aligned_cols=104 Identities=23% Similarity=0.286 Sum_probs=84.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|||||+.|+..|..+++.|.+|+|+|+.+.+-
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL------------------------------------------- 209 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL------------------------------------------- 209 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------------------
Confidence 5789999999999999999999999999999987541
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
|..+ .++.+.+.+.+++.++. +.+++++..++..+ +...+..+++.+. .+.+|.|++|
T Consensus 210 --p~~D---------------~ei~~~~~~~l~~~gv~--i~~~~~v~~~~~~~-~~v~v~~~~g~~~--~~~ad~vLvA 267 (454)
T COG1249 210 --PGED---------------PEISKELTKQLEKGGVK--ILLNTKVTAVEKKD-DGVLVTLEDGEGG--TIEADAVLVA 267 (454)
T ss_pred --CcCC---------------HHHHHHHHHHHHhCCeE--EEccceEEEEEecC-CeEEEEEecCCCC--EEEeeEEEEc
Confidence 0000 78889999988887788 89999999998876 4477777776532 7889999999
Q ss_pred eCCCCCcccCC
Q 018550 162 NGHFSVPRLAQ 172 (354)
Q Consensus 162 tG~~s~~~~p~ 172 (354)
+| .+|+...
T Consensus 268 iG--R~Pn~~~ 276 (454)
T COG1249 268 IG--RKPNTDG 276 (454)
T ss_pred cC--CccCCCC
Confidence 99 6666553
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.8e-08 Score=90.41 Aligned_cols=105 Identities=25% Similarity=0.297 Sum_probs=81.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 221 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA----------------------------------------- 221 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-----------------------------------------
Confidence 368999999999999999999999999999986533100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+.+.+++ ++.+++|.+++.++ +...+...++++++.++++|.|++|
T Consensus 222 -----~d--------------~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~~~g~~~~i~~D~vl~a 279 (475)
T PRK06327 222 -----AD--------------EQVAKEAAKAFTKQGLD--IHLGVKIGEIKTGG-KGVSVAYTDADGEAQTLEVDKLIVS 279 (475)
T ss_pred -----CC--------------HHHHHHHHHHHHHcCcE--EEeCcEEEEEEEcC-CEEEEEEEeCCCceeEEEcCEEEEc
Confidence 00 56667777777778888 99999999998765 5556665554343457999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 280 ~G--~~p~~~ 287 (475)
T PRK06327 280 IG--RVPNTD 287 (475)
T ss_pred cC--CccCCC
Confidence 99 677655
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-08 Score=92.29 Aligned_cols=105 Identities=20% Similarity=0.259 Sum_probs=77.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+.. .
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~---~-------------------------------------- 218 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP---T-------------------------------------- 218 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC---c--------------------------------------
Confidence 36899999999999999999999999999998753310 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEE-EEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV-KSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v-~~~~g~~~~~~~~~d~vIl 160 (354)
+ . .++.+.+.+.+++.|++ ++++++|.++....++...+ ...++. ..++.+|.||+
T Consensus 219 -~----~--------------~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~~~~~~~g~--~~~i~~D~vi~ 275 (472)
T PRK05976 219 -E----D--------------AELSKEVARLLKKLGVR--VVTGAKVLGLTLKKDGGVLIVAEHNGE--EKTLEADKVLV 275 (472)
T ss_pred -C----C--------------HHHHHHHHHHHHhcCCE--EEeCcEEEEEEEecCCCEEEEEEeCCc--eEEEEeCEEEE
Confidence 0 0 56677777788888998 99999999998521133333 333432 34799999999
Q ss_pred eeCCCCCcccCC
Q 018550 161 CNGHFSVPRLAQ 172 (354)
Q Consensus 161 AtG~~s~~~~p~ 172 (354)
|+| ..|+...
T Consensus 276 a~G--~~p~~~~ 285 (472)
T PRK05976 276 SVG--RRPNTEG 285 (472)
T ss_pred eeC--CccCCCC
Confidence 999 6666543
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-08 Score=92.82 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=80.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+.. .
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---~-------------------------------------- 208 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP---G-------------------------------------- 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC---C--------------------------------------
Confidence 36899999999999999999999999999998754310 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.+++ ++++++|.+++.++ +...+...++. ..++.+|.||+|
T Consensus 209 -----~~--------------~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~g~--~~~i~~D~vi~a 264 (461)
T TIGR01350 209 -----ED--------------AEVSKVVAKALKKKGVK--ILTNTKVTAVEKND-DQVVYENKGGE--TETLTGEKVLVA 264 (461)
T ss_pred -----CC--------------HHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEeCCc--EEEEEeCEEEEe
Confidence 00 55667777778888988 99999999998765 55666654442 247899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 265 ~G--~~p~~~ 272 (461)
T TIGR01350 265 VG--RKPNTE 272 (461)
T ss_pred cC--CcccCC
Confidence 99 666654
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=95.57 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC-cEEEEEeecCCceEEEEe-CEEEEeeCCCC
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETF-DAVVVCNGHFS 166 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~~-d~vIlAtG~~s 166 (354)
...+...+.+.+++.+++ +.++++++++..++++ ...+...+. +....+.+ +.||+|||.++
T Consensus 176 g~~~~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~~-~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQ--IRYDTRATRLIVDDDGRVVGVEARRY-GETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCCEEEEEEEeC-CcEEEEEeCCEEEECCCCcC
Confidence 456778888888888888 9999999999876423 233444332 22357888 99999999755
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=92.17 Aligned_cols=100 Identities=23% Similarity=0.238 Sum_probs=78.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+......
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~-------------------------------------- 185 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAP-------------------------------------- 185 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcC--------------------------------------
Confidence 368999999999999999999999999999987643211100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
..+..++.+.+.+.+++ ++++++++++.. + +...+.+.+++ ++.+|.||+|
T Consensus 186 ---------------------~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~-~-~~~~v~l~~g~----~i~aD~Vv~a 236 (396)
T PRK09754 186 ---------------------PPVQRYLLQRHQQAGVR--ILLNNAIEHVVD-G-EKVELTLQSGE----TLQADVVIYG 236 (396)
T ss_pred ---------------------HHHHHHHHHHHHHCCCE--EEeCCeeEEEEc-C-CEEEEEECCCC----EEECCEEEEC
Confidence 55667778888888998 999999999976 3 45666666664 7999999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|+.
T Consensus 237 ~G--~~pn~ 243 (396)
T PRK09754 237 IG--ISAND 243 (396)
T ss_pred CC--CChhh
Confidence 99 55553
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=95.11 Aligned_cols=163 Identities=16% Similarity=0.159 Sum_probs=81.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc----eeecCCCCC-CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG----SWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
.+||+|||||++|+++|..|++.|++|+|+|+...... .+...++.. ...+|+...-.-........+..... +
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~-g 121 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKD-G 121 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEEC-C
Confidence 46899999999999999999999999999999643211 100000000 01111111100000000000000000 0
Q ss_pred cccccCCCCCccCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 77 LMGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
......++.... ...... .....+.++.+.+.+.+.+. +++ +.. .+++++..+++....++....+++..++.
T Consensus 122 ~~~~~~~~~~~~--~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~--i~~-gtvv~li~~~~~v~gV~~~~~dG~~~~~~ 196 (514)
T PLN02985 122 KEAVAPFPVDNN--NFPYEPSARSFHNGRFVQRLRQKASSLPNVR--LEE-GTVKSLIEEKGVIKGVTYKNSAGEETTAL 196 (514)
T ss_pred EEEEEeCCCCCc--CCCcccceeeeecHHHHHHHHHHHHhCCCeE--EEe-eeEEEEEEcCCEEEEEEEEcCCCCEEEEE
Confidence 000001111000 000000 01234578888888888765 566 554 46777765542222355443333345678
Q ss_pred eCEEEEeeCCCCCccc
Q 018550 155 FDAVVVCNGHFSVPRL 170 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~ 170 (354)
+|.||.|+|.+|.-+.
T Consensus 197 AdLVVgADG~~S~vR~ 212 (514)
T PLN02985 197 APLTVVCDGCYSNLRR 212 (514)
T ss_pred CCEEEECCCCchHHHH
Confidence 9999999998776554
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-08 Score=89.73 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=77.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|++|+.+|..|++.|.+|+++++.+.+....
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~---------------------------------------- 196 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE---------------------------------------- 196 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC----------------------------------------
Confidence 4689999999999999999999999999999975431000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
..++.+.+.+.+++.|++ ++++++|++++.++ +...+.. ++ .++.+|.||+|
T Consensus 197 --------------------~~~~~~~~~~~l~~~GI~--i~~~~~V~~i~~~~-~~v~v~~-~g----~~i~~D~viva 248 (438)
T PRK07251 197 --------------------EPSVAALAKQYMEEDGIT--FLLNAHTTEVKNDG-DQVLVVT-ED----ETYRFDALLYA 248 (438)
T ss_pred --------------------CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEecC-CEEEEEE-CC----eEEEcCEEEEe
Confidence 055667777788888998 99999999998754 4444443 23 27999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 249 ~G--~~p~~~ 256 (438)
T PRK07251 249 TG--RKPNTE 256 (438)
T ss_pred eC--CCCCcc
Confidence 99 666654
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-08 Score=88.78 Aligned_cols=136 Identities=18% Similarity=0.135 Sum_probs=77.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
..||+|||||++|+.+|+.|++. |.+|+++|+...+||.........+ . ...... ...+.. -
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~-~-------~vv~~~-a~e~Le--------E 154 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFS-A-------MVVRKP-AHLFLD--------E 154 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCccccc-c-------cccccH-HHHHHH--------H
Confidence 46899999999999999999986 8999999998877663332111000 0 000000 000000 0
Q ss_pred cCCCCCccCCCCCCCCCCCC---CHHHHHHHHHHHH-HHhCCcceEEeceEEEEEEEeCCCcEEEEE------eecCC--
Q 018550 81 QAYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESNKWKVKS------RKKDD-- 148 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~-~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~------~~g~~-- 148 (354)
.+.++... ..|+ +...+...+.+.+ .+.+++ +..++.+.++..+++....+.+ .++..
T Consensus 155 lGV~fd~~--------dgy~vv~ha~e~~stLi~ka~~~~gVk--I~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s 224 (357)
T PLN02661 155 LGVPYDEQ--------ENYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQS 224 (357)
T ss_pred cCCCcccC--------CCeeEecchHHHHHHHHHHHHhcCCCE--EEeCeEeeeEEecCCEEEEEEeecchhhhccCCCC
Confidence 01222110 0111 1134444555444 345777 8889999999876533333332 12211
Q ss_pred --ceEEEEeCEEEEeeCC
Q 018550 149 --VVEEETFDAVVVCNGH 164 (354)
Q Consensus 149 --~~~~~~~d~vIlAtG~ 164 (354)
....+.+++||+|||+
T Consensus 225 ~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 225 CMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred ccceeEEECCEEEEcCCC
Confidence 1247899999999995
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.3e-09 Score=97.43 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=83.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC--CCCCCCC----------cccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNRY----------PVHSSLYKSL 69 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~~~~~----------~~~~~~~~~~ 69 (354)
++||+|||+|.||++||..+++.|.+|+|+||.+..+.++....++. ... ...++.. ..+......+
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~-~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 79 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIA-FPILEGDSIRAHVLDTIRAGKYINDEEVVWNV 79 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcc-cccCCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 47999999999999999999999999999999754332222211111 000 0001100 0011111111
Q ss_pred hhcccccccccc--CCCCCccC-CCCCCCCCC----CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEE-E
Q 018550 70 RVNLPRELMGFQ--AYPFVARN-YEGSVDLRR----YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-V 141 (354)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v 141 (354)
..+.+.....+. +.++.... ......... -.....+.+.+.+.+.+.+++ +..+ .++.+..++ +.+. +
T Consensus 80 ~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~-~v~~l~~~~-g~v~Gv 155 (466)
T PRK08401 80 ISKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVN--FIRG-FAEELAIKN-GKAYGV 155 (466)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCE--EEEe-EeEEEEeeC-CEEEEE
Confidence 111211111111 22221110 000000000 012356888888888888888 6654 788887654 4432 3
Q ss_pred EEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 142 KSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 142 ~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.. ++ ..+.++.||+|||.++..
T Consensus 156 ~~-~g----~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 156 FL-DG----ELLKFDATVIATGGFSGL 177 (466)
T ss_pred EE-CC----EEEEeCeEEECCCcCcCC
Confidence 33 32 268999999999976654
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-08 Score=90.60 Aligned_cols=63 Identities=22% Similarity=0.239 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC-ceEEEEeCEEEEeeCCCCCc
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD-VVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~-~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+...+.+.+.+.|++ ++.+++|++++.++ +.+++.+.++.+ +..++.+|.||+|+|.|+..
T Consensus 197 ~~~~~~l~~~a~~~G~~--i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~ 260 (410)
T PRK12409 197 HKFTTGLAAACARLGVQ--FRYGQEVTSIKTDG-GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRA 260 (410)
T ss_pred HHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCCCccceEecCEEEECCCcChHH
Confidence 56677777888888998 89999999998766 667776554321 01368999999999987643
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.3e-08 Score=92.39 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=81.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 210 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG----------------------------------------- 210 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-----------------------------------------
Confidence 368999999999999999999999999999987543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+.+.+++ ++++++|.+++.++ +.+.+...++ +...++.+|.||+|
T Consensus 211 -----~~--------------~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~g-g~~~~i~~D~vi~a 267 (462)
T PRK06416 211 -----ED--------------KEISKLAERALKKRGIK--IKTGAKAKKVEQTD-DGVTVTLEDG-GKEETLEADYVLVA 267 (462)
T ss_pred -----CC--------------HHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEEeC-CeeEEEEeCEEEEe
Confidence 00 56677778888888988 99999999998766 5666666554 22347899999999
Q ss_pred eCCCCCcccCC
Q 018550 162 NGHFSVPRLAQ 172 (354)
Q Consensus 162 tG~~s~~~~p~ 172 (354)
+| ..|....
T Consensus 268 ~G--~~p~~~~ 276 (462)
T PRK06416 268 VG--RRPNTEN 276 (462)
T ss_pred eC--CccCCCC
Confidence 99 6666543
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=97.84 Aligned_cols=163 Identities=17% Similarity=0.104 Sum_probs=86.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCC-----CCCCC----------Cccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG-----VDPNR----------YPVHSSLY 66 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~-----~~~~~----------~~~~~~~~ 66 (354)
..||+|||+|.||++||..+++.|.+|+|+||....++......+......+ ..++. .+.+..+.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~v 87 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRMA 87 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHHH
Confidence 4689999999999999999999999999999986554432222221110000 01110 01111111
Q ss_pred ccchhcccccccccc--CCCCCccC---CC-CCCCCCCC--------CCHHHHHHHHHHHHHHh--------C-----Cc
Q 018550 67 KSLRVNLPRELMGFQ--AYPFVARN---YE-GSVDLRRY--------PGHEEVLRYLQNFAREF--------G-----VD 119 (354)
Q Consensus 67 ~~~~~~~~~~~~~~~--~~~~~~~~---~~-~~~~~~~~--------~~~~~~~~~l~~~~~~~--------~-----~~ 119 (354)
..+..+.+..+..+. +.++.... .. .......+ .+...+...+.+.+.+. | ++
T Consensus 88 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~ 167 (626)
T PRK07803 88 ELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARIK 167 (626)
T ss_pred HHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCceE
Confidence 122222222222111 22222110 00 00001111 12356777777777665 5 66
Q ss_pred ceEEeceEEEEEEEeCCCcE-EEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 120 QVVRLHTEVLNARLVESNKW-KVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 120 ~~v~~~~~v~~i~~~~~~~~-~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+..++.++++..++ +.. .+...+ .++....+.++.||+|||.+..
T Consensus 168 --i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 168 --VFAECTITELLKDG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred --EEeCCEEEEEEEEC-CEEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence 89999999998765 432 222211 2233457899999999996443
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=92.03 Aligned_cols=60 Identities=30% Similarity=0.310 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
+...+.+.+.+.+...+++ +..+++|+++..++ +.+.+.+.++ ++.+|.||+|+|.|+..
T Consensus 143 ~p~~~~~~l~~~~~~~g~~--~~~~~~V~~i~~~~-~~~~v~~~~~-----~i~a~~vV~aaG~~~~~ 202 (380)
T TIGR01377 143 YAEKALRALQELAEAHGAT--VRDGTKVVEIEPTE-LLVTVKTTKG-----SYQANKLVVTAGAWTSK 202 (380)
T ss_pred cHHHHHHHHHHHHHHcCCE--EECCCeEEEEEecC-CeEEEEeCCC-----EEEeCEEEEecCcchHH
Confidence 3467788888888888988 88999999998766 6677776543 68999999999976543
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=97.77 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
....+...+.+.+.+ |++ ++++++|+++...+ +.|.|.+.++. .+.+|.||+|+|.|+..
T Consensus 406 ~p~~l~~aL~~~a~~-Gv~--i~~~~~V~~i~~~~-~~~~v~t~~g~----~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 406 CPAELCRALLALAGQ-QLT--IHFGHEVARLERED-DGWQLDFAGGT----LASAPVVVLANGHDAAR 465 (662)
T ss_pred CHHHHHHHHHHhccc-CcE--EEeCCEeeEEEEeC-CEEEEEECCCc----EEECCEEEECCCCCccc
Confidence 345777777777777 787 88999999998876 77888776653 56899999999987653
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.8e-09 Score=98.81 Aligned_cols=62 Identities=21% Similarity=0.185 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
.+.++.+.|.+. .+.. .++++++|++++..+ +.+++++.++. ++.+|.||.|+|.+|.-+..
T Consensus 192 ~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~-d~VtV~~~dG~----ti~aDlVVGADG~~S~vR~~ 253 (668)
T PLN02927 192 SRMTLQQILARA---VGED-VIRNESNVVDFEDSG-DKVTVVLENGQ----RYEGDLLVGADGIWSKVRNN 253 (668)
T ss_pred eHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC-CEEEEEECCCC----EEEcCEEEECCCCCcHHHHH
Confidence 456666666433 3333 267888999998876 77888887764 78999999999988866543
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.3e-08 Score=89.83 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||+|++|+.+|..|.+.|.+|+++++.+.+....
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~---------------------------------------- 209 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE---------------------------------------- 209 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccc----------------------------------------
Confidence 3689999999999999999999999999999865331000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
..++.+.+.+.+.+.+++ +++++++.+++.++ ....+.. ++ ...++.+|.||+|
T Consensus 210 --------------------d~e~~~~l~~~L~~~GI~--i~~~~~V~~i~~~~-~~v~~~~-~g--~~~~i~~D~vivA 263 (458)
T PRK06912 210 --------------------DEDIAHILREKLENDGVK--IFTGAALKGLNSYK-KQALFEY-EG--SIQEVNAEFVLVS 263 (458)
T ss_pred --------------------cHHHHHHHHHHHHHCCCE--EEECCEEEEEEEcC-CEEEEEE-CC--ceEEEEeCEEEEe
Confidence 056677778888888998 99999999998654 4344432 22 2247899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 264 ~G--~~p~~~ 271 (458)
T PRK06912 264 VG--RKPRVQ 271 (458)
T ss_pred cC--CccCCC
Confidence 99 666654
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=93.36 Aligned_cols=161 Identities=20% Similarity=0.172 Sum_probs=87.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC--CCCCCC----------Ccccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNR----------YPVHSSLYKSL 69 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~ 69 (354)
..||+|||+|.||++||..+++.|. |+|+||.+..++......+...... ...++. .+.+......+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4689999999999999999999997 9999998665554333222110000 011110 01111111122
Q ss_pred hhcccccccccc--CCCCCccCC--------CCCCCCCCC----CCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEe
Q 018550 70 RVNLPRELMGFQ--AYPFVARNY--------EGSVDLRRY----PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~~----~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~ 134 (354)
....+..+..+. +.++..... ........+ .+...+...+.+.+.+ .+++ +..++.++++..+
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~ 158 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIR--IIEGENALDLLIE 158 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcE--EEECeEeeeeecc
Confidence 222111111111 122211100 000000000 1235777888887776 5788 9999999999875
Q ss_pred CCCcE-EEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 135 ESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 135 ~~~~~-~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+ +.. .+...+. +....+.++.||+|||.++.
T Consensus 159 ~-g~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 159 T-GRVVGVWVWNR-ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred C-CEEEEEEEEEC-CcEEEEEcCEEEECCCcccC
Confidence 5 433 2444442 22347899999999997664
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-08 Score=95.92 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=90.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCC----CCCCC----------Ccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG----VDPNR----------YPVHSSLYK 67 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~----~~~~~----------~~~~~~~~~ 67 (354)
..||+|||+|.||++||..+++.|.+|+|+||....++......+..+...+ ..++. .+.+.....
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~ 108 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ 108 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 3589999999999999999999999999999987655544333222111101 01110 011111112
Q ss_pred cchhcccccccccc--CCCCCccCC---C---CCCCCC------CC--------CCHHHHHHHHHHHHHHhCCcceEEec
Q 018550 68 SLRVNLPRELMGFQ--AYPFVARNY---E---GSVDLR------RY--------PGHEEVLRYLQNFAREFGVDQVVRLH 125 (354)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~---~---~~~~~~------~~--------~~~~~~~~~l~~~~~~~~~~~~v~~~ 125 (354)
.+..+.+.....+. +.++..... . ...... .. .+...+...+.+.+.+.+++ +..+
T Consensus 109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~ 186 (617)
T PTZ00139 109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCN--FFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCE--EEec
Confidence 22222222211111 222211000 0 000000 00 12357888888888888888 9999
Q ss_pred eEEEEEEEeCCCc-EEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 126 TEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 126 ~~v~~i~~~~~~~-~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
+.++++..++++. ..+...+ .+++...+.++.||+|||.+...
T Consensus 187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 9999988733232 2233322 23345688999999999975543
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-08 Score=90.22 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=74.1
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEE-eeCCCccceeecCCCCCCCCCCCCCCCCcc-cccccccchhc-------cc
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVY-EKGEQVGGSWIYTSETESDPLGVDPNRYPV-HSSLYKSLRVN-------LP 74 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~li-e~~~~~gg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~ 74 (354)
||+|||||+||+.||.++++.|.+|.|+ .+.+.++. + .|.|...-. ...+-..+... ..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~-~-----------~Cnpsigg~~kg~L~~Eidalgg~m~~~aD 68 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGE-M-----------SCNPSIGGIAKGHLVREIDALGGLMGRAAD 68 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--------------SSSSEEESTTHHHHHHHHHHTT-SHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccc-c-----------cchhhhccccccchhHHHhhhhhHHHHHHh
Confidence 7999999999999999999999999999 33333321 1 122211000 00000000000 00
Q ss_pred cccccccCCCCCccCCCCCCC-CCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 75 RELMGFQAYPFVARNYEGSVD-LRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
.....+........ ...+ .....++..+.+++++.+... ++. + .+.+|+++..+++.-..|.+.+|. .
T Consensus 69 ~~~i~~~~lN~skG---pav~a~r~qvDr~~y~~~~~~~l~~~~nl~--i-~~~~V~~l~~e~~~v~GV~~~~g~----~ 138 (392)
T PF01134_consen 69 ETGIHFRMLNRSKG---PAVHALRAQVDRDKYSRAMREKLESHPNLT--I-IQGEVTDLIVENGKVKGVVTKDGE----E 138 (392)
T ss_dssp HHEEEEEEESTTS----GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE--E-EES-EEEEEECTTEEEEEEETTSE----E
T ss_pred HhhhhhhcccccCC---CCccchHhhccHHHHHHHHHHHHhcCCCeE--E-EEcccceEEecCCeEEEEEeCCCC----E
Confidence 00000000000000 0000 011245688899999888773 555 4 568999999876455667777664 8
Q ss_pred EEeCEEEEeeCC
Q 018550 153 ETFDAVVVCNGH 164 (354)
Q Consensus 153 ~~~d~vIlAtG~ 164 (354)
+.+|.||+|||.
T Consensus 139 ~~a~~vVlaTGt 150 (392)
T PF01134_consen 139 IEADAVVLATGT 150 (392)
T ss_dssp EEECEEEE-TTT
T ss_pred EecCEEEEeccc
Confidence 999999999995
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-07 Score=88.93 Aligned_cols=105 Identities=25% Similarity=0.249 Sum_probs=79.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~---------------------------------------- 211 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE---------------------------------------- 211 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc----------------------------------------
Confidence 3689999999999999999999999999999865331000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+.+++.+++ ++++++|+++..++ +...+.....++...++++|.||+|
T Consensus 212 ------d--------------~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vi~a 268 (466)
T PRK07818 212 ------D--------------AEVSKEIAKQYKKLGVK--ILTGTKVESIDDNG-SKVTVTVSKKDGKAQELEADKVLQA 268 (466)
T ss_pred ------C--------------HHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CeEEEEEEecCCCeEEEEeCEEEEC
Confidence 0 55667788888888999 99999999998754 5555555411222347999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 269 ~G--~~pn~~ 276 (466)
T PRK07818 269 IG--FAPRVE 276 (466)
T ss_pred cC--cccCCC
Confidence 99 666654
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.3e-09 Score=95.17 Aligned_cols=162 Identities=27% Similarity=0.383 Sum_probs=86.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCC---C----CCC--CCC----------CCccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESD---P----LGV--DPN----------RYPVHSS 64 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~---~----~~~--~~~----------~~~~~~~ 64 (354)
||||||+|.||++||..|+++|.+|+|+||.+..|+......+.... + .+. .+. ....+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 79999999999999999999999999999998877654443222100 0 011 000 0000111
Q ss_pred ccccchhcccccccccc--CCCCCc--------cCCCC-CCC------C-----CCCCCHHHHHHHHHHHHHHhCCcceE
Q 018550 65 LYKSLRVNLPRELMGFQ--AYPFVA--------RNYEG-SVD------L-----RRYPGHEEVLRYLQNFAREFGVDQVV 122 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~-~~~------~-----~~~~~~~~~~~~l~~~~~~~~~~~~v 122 (354)
+...+..+.+.....+. ..++.. ..... ... . ........+...+.+.+++.+++ +
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~--i 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVD--I 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCee--e
Confidence 11111111111100000 111111 00000 000 0 01124577888999999999988 9
Q ss_pred EeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 123 RLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 123 ~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+++++++++..+++....+...+ .++....+.++.||+|||.+..
T Consensus 159 ~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred eccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 99999999999763223344442 3344578899999999997554
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-08 Score=90.93 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=80.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---~-------------------------------------- 205 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR---G-------------------------------------- 205 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc---c--------------------------------------
Confidence 36899999999999999999999999999998653210 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+.+.+.+++.+++ ++++++|.+++.++++.+.+.+.++. ++.+|.||+|
T Consensus 206 -~----~--------------~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~g~~~v~~~~g~----~i~~D~Vv~a 260 (450)
T PRK06116 206 -F----D--------------PDIRETLVEEMEKKGIR--LHTNAVPKAVEKNADGSLTLTLEDGE----TLTVDCLIWA 260 (450)
T ss_pred -c----C--------------HHHHHHHHHHHHHCCcE--EECCCEEEEEEEcCCceEEEEEcCCc----EEEeCEEEEe
Confidence 0 0 56677778888888998 99999999998765233667666653 7899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 261 ~G--~~p~~~ 268 (450)
T PRK06116 261 IG--REPNTD 268 (450)
T ss_pred eC--CCcCCC
Confidence 99 666654
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=85.83 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC--CcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ 172 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~--~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~ 172 (354)
....-...+++.+.++|+. ++.+.+|..+...++ ....|.+.+|. .|.++.+|+|+|+|-...+|.
T Consensus 151 ~a~kslk~~~~~~~~~G~i--~~dg~~v~~~~~~~e~~~~v~V~Tt~gs----~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 151 NAAKSLKALQDKARELGVI--FRDGEKVKFIKFVDEEGNHVSVQTTDGS----IYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred eHHHHHHHHHHHHHHcCeE--EecCcceeeEeeccCCCceeEEEeccCC----eeecceEEEEecHHHHhhcCc
Confidence 3467778889999999998 999999999986432 45667777775 799999999999987777774
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.1e-08 Score=91.13 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=80.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~---------------------------------------- 214 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFL---------------------------------------- 214 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcC----------------------------------------
Confidence 3689999999999999999999999999999875431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+.+++.+++ +..+++++++..++ +.+.++..++. ++++|.|++|
T Consensus 215 ------d--------------~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~vi~a 267 (461)
T PRK05249 215 ------D--------------DEISDALSYHLRDSGVT--IRHNEEVEKVEGGD-DGVIVHLKSGK----KIKADCLLYA 267 (461)
T ss_pred ------C--------------HHHHHHHHHHHHHcCCE--EEECCEEEEEEEeC-CeEEEEECCCC----EEEeCEEEEe
Confidence 0 56677788888888988 99999999998765 56666665553 7899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| .+|+..
T Consensus 268 ~G--~~p~~~ 275 (461)
T PRK05249 268 NG--RTGNTD 275 (461)
T ss_pred ec--CCcccc
Confidence 99 566543
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.7e-08 Score=89.85 Aligned_cols=164 Identities=21% Similarity=0.228 Sum_probs=95.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC---------------------------CCCCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---------------------------SDPLGV 54 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---------------------------~~~~~~ 54 (354)
.+||+|||||+.|+.+|+.++.+|++|+|+|+++...|+-....... +-|+.+
T Consensus 12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~v 91 (532)
T COG0578 12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHLV 91 (532)
T ss_pred CCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcccc
Confidence 57999999999999999999999999999999876655543332221 122333
Q ss_pred CCCCCccccc--------------ccccchhc---cccc-ccccc----CCCCCcc-CCC-CCCCCCCCCCHHHHHHHHH
Q 018550 55 DPNRYPVHSS--------------LYKSLRVN---LPRE-LMGFQ----AYPFVAR-NYE-GSVDLRRYPGHEEVLRYLQ 110 (354)
Q Consensus 55 ~~~~~~~~~~--------------~~~~~~~~---~~~~-~~~~~----~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~ 110 (354)
.|...++... .|+.+... .|.. ..... -.|.... ... .....+...+...+.....
T Consensus 92 ~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~a 171 (532)
T COG0578 92 EPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAANA 171 (532)
T ss_pred ccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHHH
Confidence 3333222111 11111110 0000 00000 0000000 000 0000011112245555556
Q ss_pred HHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCEEEEeeCCCCCc
Q 018550 111 NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 111 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+...|-. +...++|+++..++ +-|.|...+.. +++.++.++.||.|||.|+..
T Consensus 172 ~~A~~~Ga~--il~~~~v~~~~re~-~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 172 RDAAEHGAE--ILTYTRVESLRREG-GVWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHhcccc--hhhcceeeeeeecC-CEEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 666677888 88889999999987 57888887744 557899999999999987654
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.3e-08 Score=90.70 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=80.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccc-ccccccchh-------ccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLRV-------NLP 74 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~ 74 (354)
+||+|||+|++|+.+|..+++.|.+|.|+|+.....+.+.. .|...... ......+.. ...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c-----------~ps~gG~a~g~l~rEidaLGG~~~~~~d 69 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSC-----------NPAIGGPAKGILVKEIDALGGLMGKAAD 69 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCc-----------cccccccccchhhhhhhcccchHHHHHH
Confidence 58999999999999999999999999999986433332211 11100000 000000000 000
Q ss_pred cccccccCCCCCccCCCCCC-CCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEe-CCCcEEEEEeecCCceE
Q 018550 75 RELMGFQAYPFVARNYEGSV-DLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLV-ESNKWKVKSRKKDDVVE 151 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~-~~~~~~v~~~~g~~~~~ 151 (354)
....++ ......-.... ......++..+...+++.+.+. ++. + ++.+|+++..+ ++....|.+.+|.
T Consensus 70 ~~~i~~---r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~--I-le~~Vv~li~e~~g~V~GV~t~~G~---- 139 (617)
T TIGR00136 70 KAGLQF---RVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLS--L-FQGEVEDLILEDNDEIKGVVTQDGL---- 139 (617)
T ss_pred hhceeh---eecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEEecCCcEEEEEECCCC----
Confidence 000001 10000000000 0112335577888888888776 555 4 45678888665 3244567776664
Q ss_pred EEEeCEEEEeeCCCCC
Q 018550 152 EETFDAVVVCNGHFSV 167 (354)
Q Consensus 152 ~~~~d~vIlAtG~~s~ 167 (354)
.+.++.||+|||.|..
T Consensus 140 ~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 140 KFRAKAVIITTGTFLR 155 (617)
T ss_pred EEECCEEEEccCcccC
Confidence 7999999999998753
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-08 Score=93.06 Aligned_cols=164 Identities=23% Similarity=0.206 Sum_probs=88.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCC--CCCCC----------Ccccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG--VDPNR----------YPVHSSLYKSL 69 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~~ 69 (354)
..||+|||+|.||++||..+++.|.+|+|+||....+|......+......+ ..++. ...+......+
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~ 95 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSL 95 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4789999999999999999999999999999987665433332221110000 01110 01111111122
Q ss_pred hhcccccccccc--CCCCCccC---C---CCCCC--CC-CC----CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 70 RVNLPRELMGFQ--AYPFVARN---Y---EGSVD--LR-RY----PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~---~---~~~~~--~~-~~----~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
..+.+.....+. +.++.... . ....+ .. .+ .....+...+.+.+.+.+++ +..++.++++..+
T Consensus 96 ~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~--i~~~~~v~~Li~~ 173 (541)
T PRK07804 96 VAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLD--IREHALALDLLTD 173 (541)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCE--EEECeEeeeeEEc
Confidence 222221111111 12221110 0 00000 00 01 13467888888888888887 8999999999876
Q ss_pred CCC-cEEEEEee----cCCceEEEEeCEEEEeeCCCCC
Q 018550 135 ESN-KWKVKSRK----KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 135 ~~~-~~~v~~~~----g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+++ ...+...+ ..+....+.++.||+|||.++.
T Consensus 174 ~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 174 GTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 422 22233321 1111357899999999997654
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-08 Score=94.79 Aligned_cols=163 Identities=18% Similarity=0.094 Sum_probs=88.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC------CCCCCC----------Ccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL------GVDPNR----------YPVHSSL 65 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~------~~~~~~----------~~~~~~~ 65 (354)
..||+|||+|.||++||..+++.|.+|+|+||.+..++......+...... ...++. ...+...
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 84 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA 84 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence 469999999999999999999999999999998655544333222111000 000100 0011111
Q ss_pred cccchhcccccccccc--CCCCCccCCC----CCCCCCCC--------CCHHHHHHHHHHHHHHhCCcceEEeceEEEEE
Q 018550 66 YKSLRVNLPRELMGFQ--AYPFVARNYE----GSVDLRRY--------PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNA 131 (354)
Q Consensus 66 ~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i 131 (354)
...+..+.+.....+. +.++...... .......+ .....+...+.+.+.+.+++ +..++.++++
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~~~~L 162 (566)
T PRK06452 85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVD--FYNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCE--EEeCcEEEEE
Confidence 1122222222111111 2222111000 00000011 12356777777777777887 8999999999
Q ss_pred EEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCC
Q 018550 132 RLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 132 ~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s 166 (354)
..+++....+...+. ++....+.++.||+|||..+
T Consensus 163 i~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 163 VTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 986522233444332 23345789999999999754
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.1e-08 Score=93.68 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=90.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCC----CCCC----------CCccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG----VDPN----------RYPVHSSLYKS 68 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~----~~~~----------~~~~~~~~~~~ 68 (354)
.||+|||+|.||++||..+++.|.+|+|+||....++......+..+.... ..++ ..+.+......
T Consensus 51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~~ 130 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQY 130 (635)
T ss_pred cCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHHH
Confidence 589999999999999999999999999999986555443333221111001 0010 00111111222
Q ss_pred chhcccccccccc--CCCCCccCC---C---CCCCCCC-----------C---CCHHHHHHHHHHHHHHhCCcceEEece
Q 018550 69 LRVNLPRELMGFQ--AYPFVARNY---E---GSVDLRR-----------Y---PGHEEVLRYLQNFAREFGVDQVVRLHT 126 (354)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~---~---~~~~~~~-----------~---~~~~~~~~~l~~~~~~~~~~~~v~~~~ 126 (354)
+..+.+.....+. +.++..... . ...+... + .....+...+.+.+.+.+++ +..++
T Consensus 131 l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~~ 208 (635)
T PLN00128 131 MCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQ--FFVEY 208 (635)
T ss_pred HHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCE--EEEee
Confidence 2222322222111 222221100 0 0000000 0 12356777787777777888 88899
Q ss_pred EEEEEEEeCCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 127 EVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 127 ~v~~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.++++..++++ ...+...+ .+++...+.++.||+|||.++..
T Consensus 209 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 209 FALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred EEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 99998765323 23343322 23335688999999999976543
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.5e-08 Score=92.35 Aligned_cols=65 Identities=17% Similarity=0.054 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+...+...+...+.+.|.+ +.++++|+++..+++..+.+.+.+. +++..++.++.||+|+|.|+.
T Consensus 147 dp~rl~~al~~~A~~~Ga~--i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 147 DPFRLTAANMLDAKEHGAQ--ILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 3456666666777788998 8999999999886523334555442 122357999999999998764
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-08 Score=94.34 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=86.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC-ccceeecCCCCCCCCC--CCCCCC----------Cccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-VGGSWIYTSETESDPL--GVDPNR----------YPVHSSLYKS 68 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~-~gg~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~ 68 (354)
..||+|||+|.||++||..+ +.|.+|+|+||.+. .||......+..+... ...++. ...+......
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~ 85 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEI 85 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHH
Confidence 36899999999999999999 99999999999753 3433322211110000 001110 0111111222
Q ss_pred chhcccccccccc--CCCCCccCC----CCCCCCCCCC--------CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 69 LRVNLPRELMGFQ--AYPFVARNY----EGSVDLRRYP--------GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
+..+.+.....+. +.++..... ........++ +...+...+.+.+.+.+++ +.+++.++++..+
T Consensus 86 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~t~v~~Li~~ 163 (543)
T PRK06263 86 LVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIK--ILEEVMAIKLIVD 163 (543)
T ss_pred HHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCE--EEeCeEeeeeEEe
Confidence 2222221111111 222211000 0000000111 2356777788777777888 9999999999876
Q ss_pred CCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCC
Q 018550 135 ESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 135 ~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s 166 (354)
+++ ...+...+ ..+....+.++.||+|||..+
T Consensus 164 ~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 164 ENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred CCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 523 22233322 233345789999999999754
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-08 Score=93.65 Aligned_cols=161 Identities=18% Similarity=0.191 Sum_probs=84.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCC---CCCCC--CCCC----------Cccccccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES---DPLGV--DPNR----------YPVHSSLYKS 68 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~---~~~~~--~~~~----------~~~~~~~~~~ 68 (354)
||+|||+|.||++||..+++.|.+|+|+||....++......+... ...+. .++. ...+......
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 6999999999999999999999999999997655433222211110 00000 0000 0001111111
Q ss_pred chhcccccccccc--CCCCCccCC--------CCC-CCCCCC---CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 69 LRVNLPRELMGFQ--AYPFVARNY--------EGS-VDLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~--------~~~-~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
+..+.+.....+. +.++..... ... .....+ .....+...+.+.+.+.+++ +..++.++++..+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~v~~L~~~ 158 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVS--FFNEYFALDLIHD 158 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCE--EEeccEEEEEEEe
Confidence 1111111111111 112211000 000 000001 12346777777777777888 9999999999876
Q ss_pred CCCcE-EEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 135 ESNKW-KVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 135 ~~~~~-~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+ +.. .+...+ ..+....+.++.||+|||.++.
T Consensus 159 ~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 159 D-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred C-CEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 5 433 233222 1222357899999999997554
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.5e-08 Score=89.29 Aligned_cols=103 Identities=20% Similarity=0.277 Sum_probs=79.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~----------------------------------------- 205 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE----------------------------------------- 205 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc-----------------------------------------
Confidence 689999999999999999999999999999875431000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
. .++...+++.+.+.+++ ++++++|.+++.++ +...+.+.... ...++++|.||+|+
T Consensus 206 -----d--------------~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~~~v~~~~~~-~~~~i~~D~ViiA~ 262 (463)
T TIGR02053 206 -----E--------------PEISAAVEEALAEEGIE--VVTSAQVKAVSVRG-GGKIITVEKPG-GQGEVEADELLVAT 262 (463)
T ss_pred -----C--------------HHHHHHHHHHHHHcCCE--EEcCcEEEEEEEcC-CEEEEEEEeCC-CceEEEeCEEEEeE
Confidence 0 55667777888888998 99999999998765 55556554311 12479999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| ..|+..
T Consensus 263 G--~~p~~~ 269 (463)
T TIGR02053 263 G--RRPNTD 269 (463)
T ss_pred C--CCcCCC
Confidence 9 666655
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-08 Score=93.06 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=88.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--------------Cccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--------------YPVHSSLYKS 68 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 68 (354)
.||+|||+|.||++||..+++.|.+|+|+||....++......+......+..+.. .+.+......
T Consensus 13 ~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~ 92 (598)
T PRK09078 13 YDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIEY 92 (598)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHHHH
Confidence 68999999999999999999999999999997655544333222111100100100 0011111111
Q ss_pred chhcccccccccc--CCCCCccC---CC---CCCCCC------CC--------CCHHHHHHHHHHHHHHhCCcceEEece
Q 018550 69 LRVNLPRELMGFQ--AYPFVARN---YE---GSVDLR------RY--------PGHEEVLRYLQNFAREFGVDQVVRLHT 126 (354)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~---~~---~~~~~~------~~--------~~~~~~~~~l~~~~~~~~~~~~v~~~~ 126 (354)
+..+.+.....+. +.++.... .. ...... .+ .....+...+.+.+.+.+++ +..++
T Consensus 93 l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~--i~~~~ 170 (598)
T PRK09078 93 MCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAE--FFIEY 170 (598)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCE--EEEeE
Confidence 2222222111111 12221100 00 000000 00 12356777888878777888 99999
Q ss_pred EEEEEEEeCCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 127 EVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 127 ~v~~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.++++..++++ ...+...+ .++....+.++.||+|||.+...
T Consensus 171 ~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 171 FALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred EEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 99999875422 23333322 23334688999999999976543
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-09 Score=73.88 Aligned_cols=66 Identities=26% Similarity=0.368 Sum_probs=53.5
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCc---EEEccC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNG 264 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g 264 (354)
+++|||+|++|+|+|..|++.|++|+++++++. ....+.+++.+ ++++++.++++..++. |+++||
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 589999999999999999999999999999885 12333444555 9999999999986542 667765
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-08 Score=83.07 Aligned_cols=34 Identities=29% Similarity=0.539 Sum_probs=28.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~-~v~lie~~~ 35 (354)
.++|+|||||.+|+.+|..+.+. +- +|.++|..+
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 46899999999999999999764 54 899999764
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.4e-08 Score=89.30 Aligned_cols=103 Identities=26% Similarity=0.341 Sum_probs=77.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~----------------------------------------- 213 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAA----------------------------------------- 213 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcC-----------------------------------------
Confidence 689999999999999999999999999999876431000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
. .++.+.+.+.+.+. ++ +.++++|.+++..+ +...+...++.+...++++|.||+|+
T Consensus 214 -----d--------------~~~~~~~~~~l~~~-v~--i~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~i~~D~vi~a~ 270 (471)
T PRK06467 214 -----D--------------KDIVKVFTKRIKKQ-FN--IMLETKVTAVEAKE-DGIYVTMEGKKAPAEPQRYDAVLVAV 270 (471)
T ss_pred -----C--------------HHHHHHHHHHHhhc-eE--EEcCCEEEEEEEcC-CEEEEEEEeCCCcceEEEeCEEEEee
Confidence 0 55666777766665 76 89999999998765 55666655433323579999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| ..|+..
T Consensus 271 G--~~pn~~ 277 (471)
T PRK06467 271 G--RVPNGK 277 (471)
T ss_pred c--ccccCC
Confidence 9 666654
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.3e-08 Score=92.18 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
+...+...+.+.+.+.|++ ++.++.|++++. + +.+.|.+.++ ++.+|.||+|+|.|+...
T Consensus 181 ~P~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~-~-~~~~v~t~~g-----~v~A~~VV~Atga~s~~l 240 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGVE--IHENTPMTGLEE-G-QPAVVRTPDG-----QVTADKVVLALNAWMASH 240 (460)
T ss_pred CHHHHHHHHHHHHHHcCCE--EECCCeEEEEee-C-CceEEEeCCc-----EEECCEEEEccccccccc
Confidence 3467778888888888998 999999999975 3 4577777654 689999999999876533
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.1e-08 Score=91.59 Aligned_cols=165 Identities=13% Similarity=0.049 Sum_probs=88.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCC----CCCCCC----------cccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG----VDPNRY----------PVHSSLYK 67 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~----~~~~~~----------~~~~~~~~ 67 (354)
..||+|||+|.||++||..+++.|.+|+|+||....++......+......+ ..++.. +.+.....
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v~ 91 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIE 91 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHHH
Confidence 3689999999999999999999999999999976555443333221111111 111110 00111111
Q ss_pred cchhcccccccccc--CCCCCccC---C---CCCCCCC-----CC--------CCHHHHHHHHHHHHHHhCCcceEEece
Q 018550 68 SLRVNLPRELMGFQ--AYPFVARN---Y---EGSVDLR-----RY--------PGHEEVLRYLQNFAREFGVDQVVRLHT 126 (354)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~---~---~~~~~~~-----~~--------~~~~~~~~~l~~~~~~~~~~~~v~~~~ 126 (354)
.+....+.....+. +.++.... . ....+.. .+ .....+...+.+.+.+.+++ +..++
T Consensus 92 ~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~--i~~~~ 169 (591)
T PRK07057 92 FMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQ--FFVEW 169 (591)
T ss_pred HHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCE--EEeCc
Confidence 12111111111111 12221100 0 0000000 00 12356777787777778888 89999
Q ss_pred EEEEEEEeCCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 127 EVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 127 ~v~~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.++++..++++ ...+...+ .++....+.++.||+|||..+..
T Consensus 170 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 170 MALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred EEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 99998875323 33344322 22334578899999999975543
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=88.50 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=79.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..+++.|.+|+++++.+.+...
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~----------------------------------------- 204 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG----------------------------------------- 204 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-----------------------------------------
Confidence 367999999999999999999999999999986533100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+.+.+.+++.+++ +..++++.++...+ +...+.+.++. ++++|.||+|
T Consensus 205 -~----d--------------~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~viva 258 (446)
T TIGR01424 205 -F----D--------------DDMRALLARNMEGRGIR--IHPQTSLTSITKTD-DGLKVTLSHGE----EIVADVVLFA 258 (446)
T ss_pred -c----C--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeEEEEEcCCc----EeecCEEEEe
Confidence 0 0 56667777778888998 99999999998755 45666665543 7999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 259 ~G--~~pn~~ 266 (446)
T TIGR01424 259 TG--RSPNTK 266 (446)
T ss_pred eC--CCcCCC
Confidence 99 666543
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.5e-08 Score=88.72 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=79.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~---------------------------------------- 205 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSF---------------------------------------- 205 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCccc----------------------------------------
Confidence 3689999999999999999999999999999875431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+++.+++.+++ ++.++.++++..+.++...+...++. ..+.+|.|++|
T Consensus 206 ------d--------------~~~~~~~~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~v~~~~g~---~~i~~D~vi~a 260 (450)
T TIGR01421 206 ------D--------------SMISETITEEYEKEGIN--VHKLSKPVKVEKTVEGKLVIHFEDGK---SIDDVDELIWA 260 (450)
T ss_pred ------C--------------HHHHHHHHHHHHHcCCE--EEcCCEEEEEEEeCCceEEEEECCCc---EEEEcCEEEEe
Confidence 0 56677788888888999 99999999998754233556555442 37899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 261 ~G--~~pn~~ 268 (450)
T TIGR01421 261 IG--RKPNTK 268 (450)
T ss_pred eC--CCcCcc
Confidence 99 666654
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-07 Score=88.36 Aligned_cols=104 Identities=26% Similarity=0.318 Sum_probs=79.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~---------------------------------------- 210 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRE---------------------------------------- 210 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCccc----------------------------------------
Confidence 3689999999999999999999999999999875431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+.+++.|++ ++++++|.+++..+ +...+...... ...++.+|.||+|
T Consensus 211 ------~--------------~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~~~-~~~~i~~D~Vi~A 266 (463)
T PRK06370 211 ------D--------------EDVAAAVREILEREGID--VRLNAECIRVERDG-DGIAVGLDCNG-GAPEITGSHILVA 266 (463)
T ss_pred ------C--------------HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEEeCC-CceEEEeCEEEEC
Confidence 0 55667777778888998 99999999998765 44555543211 1247999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 267 ~G--~~pn~~ 274 (463)
T PRK06370 267 VG--RVPNTD 274 (463)
T ss_pred cC--CCcCCC
Confidence 99 666654
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.7e-08 Score=94.17 Aligned_cols=165 Identities=21% Similarity=0.188 Sum_probs=85.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc-eeecC-CCCC--CCC--CCCCCCC----------Ccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG-SWIYT-SETE--SDP--LGVDPNR----------YPVHSSL 65 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg-~~~~~-~~~~--~~~--~~~~~~~----------~~~~~~~ 65 (354)
..||+|||+|.||++||..+++.|.+|+|+||...+++ ..... +++. ... ....++. ...+...
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~l 114 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREAN 114 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCHHH
Confidence 36899999999999999999999999999998665542 21111 1110 000 0111110 0111111
Q ss_pred cccchhcccccccccc--CCCCCccCC--------CCCCCCCC-C---CCHHHHH----HHHHHHHHHhCCcceEEeceE
Q 018550 66 YKSLRVNLPRELMGFQ--AYPFVARNY--------EGSVDLRR-Y---PGHEEVL----RYLQNFAREFGVDQVVRLHTE 127 (354)
Q Consensus 66 ~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~-~---~~~~~~~----~~l~~~~~~~~~~~~v~~~~~ 127 (354)
...+..+.+.....+. +.++..... ........ + .+...+. +.+.+.+.+.+++ +.+++.
T Consensus 115 v~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~--i~~~t~ 192 (640)
T PRK07573 115 VYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVK--MYTRTE 192 (640)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCE--EEeceE
Confidence 1122222222111111 222221100 00000000 0 1122333 4455566677888 999999
Q ss_pred EEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCCc
Q 018550 128 VLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 128 v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
++++..+++....+...+. ++....+.++.||+|||.++..
T Consensus 193 v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 193 MLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred EEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 9999876522233444332 2334578999999999976543
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.3e-08 Score=91.17 Aligned_cols=161 Identities=12% Similarity=0.084 Sum_probs=81.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCC-CCCCCC----------cccccccccch
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG-VDPNRY----------PVHSSLYKSLR 70 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~ 70 (354)
..||+|||+|.||++||..+. .|.+|+|+||.+..++......+....... ..+... ..+..+...+.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~~ 82 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKILA 82 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 379999999999999999985 699999999987766543322111100000 000000 00111111111
Q ss_pred hcccccccccc--CCCCCccC--CC---C--CCCCCC-C---CCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCC
Q 018550 71 VNLPRELMGFQ--AYPFVARN--YE---G--SVDLRR-Y---PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVES 136 (354)
Q Consensus 71 ~~~~~~~~~~~--~~~~~~~~--~~---~--~~~~~~-~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~ 136 (354)
.+.+.....+. +.++.... .. . ...... + .....+.+.+.+.+.+ .+++ +.+++.++++..+++
T Consensus 83 ~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~--i~~~t~v~~Li~~~~ 160 (433)
T PRK06175 83 NESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNIT--IIENCYLVDIIENDN 160 (433)
T ss_pred HHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCE--EEECcEeeeeEecCC
Confidence 11111111111 11111100 00 0 000000 0 1234566667666654 4788 999999999976542
Q ss_pred CcEEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 137 NKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 137 ~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
....+...+ .+....+.++.||+|||..+
T Consensus 161 ~v~Gv~~~~-~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 161 TCIGAICLK-DNKQINIYSKVTILATGGIG 189 (433)
T ss_pred EEEEEEEEE-CCcEEEEEcCeEEEccCccc
Confidence 223333222 12234689999999999643
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.2e-08 Score=92.58 Aligned_cols=163 Identities=12% Similarity=0.037 Sum_probs=88.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCC----CCCCCCC----------Cccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP----LGVDPNR----------YPVHSSLYKS 68 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~----~~~~~~~----------~~~~~~~~~~ 68 (354)
.||+|||+|.||++||..+++.|.+|+|+||....++......+...-. ....++. .+.+......
T Consensus 8 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~ 87 (588)
T PRK08958 8 FDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEY 87 (588)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHHH
Confidence 5899999999999999999999999999999865554333221111000 0111110 0111112222
Q ss_pred chhcccccccccc--CCCCCccCC---C---CCCCCCC-----C--------CCHHHHHHHHHHHHHHhCCcceEEeceE
Q 018550 69 LRVNLPRELMGFQ--AYPFVARNY---E---GSVDLRR-----Y--------PGHEEVLRYLQNFAREFGVDQVVRLHTE 127 (354)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~---~---~~~~~~~-----~--------~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 127 (354)
+..+.+.....+. +.++..... . ...+... + .....+...+.+.+.+.+++ +..++.
T Consensus 88 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~--i~~~~~ 165 (588)
T PRK08958 88 MCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTT--IFSEWY 165 (588)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCE--EEeCcE
Confidence 2223332222111 223321100 0 0000000 0 12356777777777777887 899999
Q ss_pred EEEEEEeCCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 128 VLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 128 v~~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
++++..++++ ..-+...+ .++....+.++.||+|||..+.
T Consensus 166 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 166 ALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred EEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 9999875323 22333322 2333457889999999997553
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=88.63 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=79.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+-..+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~---------------------------------------- 242 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGF---------------------------------------- 242 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCccc----------------------------------------
Confidence 3689999999999999999999999999999865321000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+.+++.+++ ++++++|.++...+ +...+...++. ++++|.|++|
T Consensus 243 ------d--------------~~~~~~l~~~l~~~GI~--i~~~~~V~~i~~~~-~~~~v~~~~g~----~i~~D~vl~a 295 (499)
T PLN02507 243 ------D--------------DEMRAVVARNLEGRGIN--LHPRTNLTQLTKTE-GGIKVITDHGE----EFVADVVLFA 295 (499)
T ss_pred ------C--------------HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CeEEEEECCCc----EEEcCEEEEe
Confidence 0 66777788888888998 99999999998765 55666665543 7999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 296 ~G--~~pn~~ 303 (499)
T PLN02507 296 TG--RAPNTK 303 (499)
T ss_pred ec--CCCCCC
Confidence 99 666654
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.3e-08 Score=91.22 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcE-EEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
...+...+.+.+.+.|++ ++.+++|++++.++ +.+ .+.+.++ ++.+|.||+|+|.|+..
T Consensus 200 p~~~~~~l~~~~~~~G~~--i~~~~~V~~i~~~~-~~~~~v~t~~~-----~~~a~~VV~a~G~~~~~ 259 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVK--FRFNTPVDGLLVEG-GRITGVQTGGG-----VITADAYVVALGSYSTA 259 (416)
T ss_pred HHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEEeCCc-----EEeCCEEEECCCcchHH
Confidence 357777777788888988 89999999998766 444 3555432 78999999999987643
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.7e-09 Score=68.38 Aligned_cols=37 Identities=38% Similarity=0.625 Sum_probs=34.4
Q ss_pred EEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 7 VIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 7 IIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeE
Confidence 8999999999999999999999999999999988875
|
... |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-07 Score=87.26 Aligned_cols=105 Identities=26% Similarity=0.288 Sum_probs=78.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~----------------------------------------- 212 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG----------------------------------------- 212 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-----------------------------------------
Confidence 478999999999999999999999999999986543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIl 160 (354)
+ . .++.+.+++.+++.+++ +++++++.++..++ +...+..... ++...++++|.|++
T Consensus 213 -~----d--------------~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~~~~g~~~~i~~D~vi~ 270 (466)
T PRK06115 213 -T----D--------------TETAKTLQKALTKQGMK--FKLGSKVTGATAGA-DGVSLTLEPAAGGAAETLQADYVLV 270 (466)
T ss_pred -C----C--------------HHHHHHHHHHHHhcCCE--EEECcEEEEEEEcC-CeEEEEEEEcCCCceeEEEeCEEEE
Confidence 0 0 45667777788888998 99999999998754 4555554321 12235799999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| ..|+..
T Consensus 271 a~G--~~pn~~ 279 (466)
T PRK06115 271 AIG--RRPYTQ 279 (466)
T ss_pred ccC--Cccccc
Confidence 999 666543
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-07 Score=88.04 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=79.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~----------------------------------------- 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE----------------------------------------- 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC-----------------------------------------
Confidence 689999999999999999999999999999865331100
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
. .++.+.+.+.+++.|++ +..++++.+++.++ +.+.+...++. ++++|.|++|+
T Consensus 217 -----d--------------~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~g~----~l~~D~vl~a~ 270 (466)
T PRK07845 217 -----D--------------ADAAEVLEEVFARRGMT--VLKRSRAESVERTG-DGVVVTLTDGR----TVEGSHALMAV 270 (466)
T ss_pred -----C--------------HHHHHHHHHHHHHCCcE--EEcCCEEEEEEEeC-CEEEEEECCCc----EEEecEEEEee
Confidence 0 55667788888888998 99999999998765 55666665553 79999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| ..|+..
T Consensus 271 G--~~pn~~ 277 (466)
T PRK07845 271 G--SVPNTA 277 (466)
T ss_pred c--CCcCCC
Confidence 9 666654
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-07 Score=87.89 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=75.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~----------------------------------------- 204 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH----------------------------------------- 204 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-----------------------------------------
Confidence 368999999999999999999999999999987543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+.+.+.. +.+++ +++++++++++.++ +...+.+.++. ++++|.|++|
T Consensus 205 -~---d---------------~~~~~~l~~l~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~i~~D~vl~a 257 (451)
T PRK07846 205 -L---D---------------DDISERFTELA-SKRWD--VRLGRNVVGVSQDG-SGVTLRLDDGS----TVEADVLLVA 257 (451)
T ss_pred -c---C---------------HHHHHHHHHHH-hcCeE--EEeCCEEEEEEEcC-CEEEEEECCCc----EeecCEEEEE
Confidence 0 0 44555555443 34676 88999999998755 55666665543 7999999999
Q ss_pred eCCCCCcccCC
Q 018550 162 NGHFSVPRLAQ 172 (354)
Q Consensus 162 tG~~s~~~~p~ 172 (354)
+| ..|+...
T Consensus 258 ~G--~~pn~~~ 266 (451)
T PRK07846 258 TG--RVPNGDL 266 (451)
T ss_pred EC--CccCccc
Confidence 99 6666544
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-07 Score=90.52 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=83.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCC--CCCCCCC--CCCCCC----------ccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSE--TESDPLG--VDPNRY----------PVHSSLY 66 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~--~~~~~~~--~~~~~~----------~~~~~~~ 66 (354)
.||+|||+|.||++||..+++. |.+|+|+||....++.. ...+ ..+...+ ..++.. ..+....
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 6899999999999999999998 99999999976433222 1111 1111111 011100 0000011
Q ss_pred ccchhcccccccccc--CCCCCccC---CCCCCCCCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEE
Q 018550 67 KSLRVNLPRELMGFQ--AYPFVARN---YEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWK 140 (354)
Q Consensus 67 ~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~ 140 (354)
..+....+.....+. +.++.... ...............+...+.+.+.+.+ ++ +..++.++++..+++....
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~--i~~~~~v~~Li~~~g~v~G 168 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDN--VLNRVFITDLLVDDNRIAG 168 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCE--EEeCCEEEEEEEeCCEEEE
Confidence 111111111111111 12221100 0000000011234567777777776654 88 9999999999865522222
Q ss_pred EEE-eecCCceEEEEeCEEEEeeCCCCC
Q 018550 141 VKS-RKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 141 v~~-~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+.. ....+....+.++.||+|||.++.
T Consensus 169 v~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 169 AVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEccCCcEEEEECCEEEECCCchhh
Confidence 322 111222357899999999997654
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=90.58 Aligned_cols=162 Identities=18% Similarity=0.104 Sum_probs=84.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--------------Ccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--------------YPVHSSLYK 67 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 67 (354)
..||+|||+|.||++||..+++. .+|+|+||....++......+...-..+..+.. .+.+.....
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v~ 83 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAAE 83 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHHH
Confidence 36899999999999999999987 999999997654443222211110000000110 000111111
Q ss_pred cchhcccccccccc--CCCCCccCCC------CCCC---------CC-CC---CCHHHHHHHHHHHHHHhCCcceEEece
Q 018550 68 SLRVNLPRELMGFQ--AYPFVARNYE------GSVD---------LR-RY---PGHEEVLRYLQNFAREFGVDQVVRLHT 126 (354)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~---------~~-~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~ 126 (354)
.+..+.+.....+. +.++...... .... .. .+ .+...+...+.+.+.+.+++ +..++
T Consensus 84 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~--i~~~~ 161 (583)
T PRK08205 84 IMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVE--FFNEF 161 (583)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCE--EEeCC
Confidence 11111221111111 2222111000 0000 00 01 12356778888888888888 99999
Q ss_pred EEEEEEEeC----CCcEEEEEee-cCCceEEEEeCEEEEeeCCCC
Q 018550 127 EVLNARLVE----SNKWKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 127 ~v~~i~~~~----~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s 166 (354)
.++++..++ +....+...+ .++....+.++.||+|||.++
T Consensus 162 ~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 162 YVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred EEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 999998654 1222233221 223335789999999999755
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.6e-08 Score=82.47 Aligned_cols=106 Identities=26% Similarity=0.328 Sum_probs=88.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|||+|..|+..+.--.+.|-+|+++|-.+++|+.+.
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD--------------------------------------- 251 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD--------------------------------------- 251 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------------
Confidence 47899999999999999999999999999999887765532
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~vIl 160 (354)
.++...++..+.+.++. +.++++|+.++.+.++...+.+.+.. ++.+++++|.+++
T Consensus 252 ---------------------~Eisk~~qr~L~kQgik--F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLV 308 (506)
T KOG1335|consen 252 ---------------------GEISKAFQRVLQKQGIK--FKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLV 308 (506)
T ss_pred ---------------------HHHHHHHHHHHHhcCce--eEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEE
Confidence 67778888888888999 99999999999987567777776643 3458999999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| .+|..-
T Consensus 309 siG--RrP~t~ 317 (506)
T KOG1335|consen 309 SIG--RRPFTE 317 (506)
T ss_pred Ecc--Cccccc
Confidence 999 555543
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-07 Score=86.76 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 102 HEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 102 ~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
...+.+.+.+.+.+ .+++ ++++++|+++.+.+++.|++...+ ..+...++.+|+||+|.|.|+..
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~--i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~ 249 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQ--VKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIP 249 (497)
T ss_pred HHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence 34566666666544 3777 899999999988733789887532 11111368999999999987743
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-07 Score=87.00 Aligned_cols=99 Identities=23% Similarity=0.297 Sum_probs=75.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---~--------------------------------------- 187 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP---D--------------------------------------- 187 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc---h---------------------------------------
Confidence 6899999999999999999999999999998653210 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
.+ ..++.+++.+.+++.+++ +++++++.++..++ +...+...+ . ++.+|.+|+|+
T Consensus 188 ---------------~~--~~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~-~----~i~~d~vi~a~ 242 (444)
T PRK09564 188 ---------------SF--DKEITDVMEEELRENGVE--LHLNEFVKSLIGED-KVEGVVTDK-G----EYEADVVIVAT 242 (444)
T ss_pred ---------------hc--CHHHHHHHHHHHHHCCCE--EEcCCEEEEEecCC-cEEEEEeCC-C----EEEcCEEEECc
Confidence 00 066778888888888998 99999999996533 333444433 2 68999999999
Q ss_pred CCCCCccc
Q 018550 163 GHFSVPRL 170 (354)
Q Consensus 163 G~~s~~~~ 170 (354)
| ..|+.
T Consensus 243 G--~~p~~ 248 (444)
T PRK09564 243 G--VKPNT 248 (444)
T ss_pred C--CCcCH
Confidence 9 55543
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-07 Score=91.42 Aligned_cols=66 Identities=18% Similarity=0.042 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC-CC-cEEEEEeec-CCceEEEEeCEEEEeeCCCCCc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SN-KWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~-~~-~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
+...+...+...+.+.|.+ +..+++|+++..++ ++ .+.+...+. ++...++.+|.||+|+|.|+..
T Consensus 230 dp~rl~~al~~~A~~~Ga~--i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~ 298 (627)
T PLN02464 230 NDSRLNVALACTAALAGAA--VLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDE 298 (627)
T ss_pred cHHHHHHHHHHHHHhCCcE--EEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHH
Confidence 4467777888888888988 88999999998763 13 344555432 2223478999999999987643
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=88.30 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCCc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
+...+...+.+.+.+.|++ ++++++|+++..++++.|.+++.+. .+...++.+|+||+|+|.|+..
T Consensus 176 dp~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~ 242 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTT--IRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALP 242 (483)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHH
Confidence 3467788888888888988 9999999999886535688765431 1212368999999999987643
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=90.79 Aligned_cols=163 Identities=19% Similarity=0.195 Sum_probs=86.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCC-CCC--CCCCC--CCCCC----------Cccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTS-ETE--SDPLG--VDPNR----------YPVHSS 64 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~-~~~--~~~~~--~~~~~----------~~~~~~ 64 (354)
..||+|||+|.||++||..+++.| .+|+|+||....++...... ++. ..+.. ..++. .+.+..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 469999999999999999999874 89999999765554333221 111 00000 00100 001111
Q ss_pred ccccchhcccccccccc--CCCCCccCCC--------CC-CCCCCC---CCHHHHHHHHHHHHHHhCCcceEEeceEEEE
Q 018550 65 LYKSLRVNLPRELMGFQ--AYPFVARNYE--------GS-VDLRRY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLN 130 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~-~~~~~~---~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~ 130 (354)
....+..+.+.....+. +.++...... .. .....+ .....+...+.+.+.+.+++ +..++.+++
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~--i~~~t~v~~ 160 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVT--IYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCE--EEeCcEEEE
Confidence 12222222222211111 1222110000 00 000001 13356778888877777888 899999999
Q ss_pred EEEeCCCc-EEEEE-eecCCceEEEEeCEEEEeeCCCCC
Q 018550 131 ARLVESNK-WKVKS-RKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 131 i~~~~~~~-~~v~~-~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+..++ +. ..+.. ...++....+.++.||+|||.++.
T Consensus 161 L~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 161 LILED-NQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred EEEEC-CEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 98754 32 22221 111222346899999999997654
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.5e-08 Score=89.58 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHH----hCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 101 GHEEVLRYLQNFARE----FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~----~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+...+...+.+.+.+ .|....+.++++|++|...+++.|.|.+.++ ++.+|.||+|+|.|+.
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-----~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-----EIRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-----EEEeCEEEECcChhHH
Confidence 345677777777777 6733238899999999987436788887765 7999999999998764
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.1e-07 Score=86.39 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=77.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~----------------------------------------- 197 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE----------------------------------------- 197 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCc-----------------------------------------
Confidence 689999999999999999999999999999865331000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
. .++.+.+.+.+++.|++ +++++++.+++.++ +.+.+...++ ++.+|.|++|+
T Consensus 198 -----~--------------~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~-~~v~v~~~~g-----~i~~D~vl~a~ 250 (441)
T PRK08010 198 -----D--------------RDIADNIATILRDQGVD--IILNAHVERISHHE-NQVQVHSEHA-----QLAVDALLIAS 250 (441)
T ss_pred -----C--------------HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEcCC-----eEEeCEEEEee
Confidence 0 55667788888888999 99999999998765 5555554332 58899999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| .+|+..
T Consensus 251 G--~~pn~~ 257 (441)
T PRK08010 251 G--RQPATA 257 (441)
T ss_pred c--CCcCCC
Confidence 9 566543
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=84.76 Aligned_cols=130 Identities=22% Similarity=0.407 Sum_probs=89.9
Q ss_pred eEEEEcCChHHHHHHHHHHHc-------------CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccch
Q 018550 4 HVAVIGAGAAGLVVGHELLRE-------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR 70 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~-------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (354)
+|+|+|||+.|+.+|.+|++. .++|+|+|+.+.+ ..
T Consensus 157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I----Lp--------------------------- 205 (405)
T COG1252 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI----LP--------------------------- 205 (405)
T ss_pred EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh----cc---------------------------
Confidence 699999999999999999764 1389999987643 00
Q ss_pred hccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.|+ .++.++.++..++.|++ +++++.|++++.+. +++++++
T Consensus 206 ---------------------------~~~--~~l~~~a~~~L~~~GV~--v~l~~~Vt~v~~~~-----v~~~~g~--- 246 (405)
T COG1252 206 ---------------------------MFP--PKLSKYAERALEKLGVE--VLLGTPVTEVTPDG-----VTLKDGE--- 246 (405)
T ss_pred ---------------------------CCC--HHHHHHHHHHHHHCCCE--EEcCCceEEECCCc-----EEEccCC---
Confidence 011 78889999999999999 99999999997654 6776664
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCC-CcceeecccCCCCCCCCCCeEEEEccC
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSW-PGKQMHSHNYRIPNPFQDQVVILIGHY 206 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~-~~~~~~~~~~~~~~~~~~~~v~ViG~G 206 (354)
.+++++.+|-|+|....+..-.+.+.+.- .++.......... .-..|-++|-.
T Consensus 247 ~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~---~~~~IFa~GD~ 300 (405)
T COG1252 247 EEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVP---GHPDIFAAGDC 300 (405)
T ss_pred eeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccC---CCCCeEEEecc
Confidence 15999999999997555544443233322 2344432222111 22457777743
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.3e-08 Score=86.61 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=31.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
+||+|||||++|+++|+.|+++|.+|+|+|++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999753
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-07 Score=86.32 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=77.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
.++++|||||+.|+.+|..+... |.+|+|+++.+.+...+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~------------------------------------- 229 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGF------------------------------------- 229 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccccc-------------------------------------
Confidence 36899999999999999876654 89999999876431000
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
. .++.+.+.+.+++.+++ +++++.+.++..++++...+.+.++. ++++|.|
T Consensus 230 ---------d--------------~~~~~~l~~~L~~~GI~--i~~~~~v~~i~~~~~~~~~v~~~~g~----~i~~D~v 280 (486)
T TIGR01423 230 ---------D--------------STLRKELTKQLRANGIN--IMTNENPAKVTLNADGSKHVTFESGK----TLDVDVV 280 (486)
T ss_pred ---------C--------------HHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCceEEEEEcCCC----EEEcCEE
Confidence 0 66778888888888998 99999999998754243556655543 7999999
Q ss_pred EEeeCCCCCcccC
Q 018550 159 VVCNGHFSVPRLA 171 (354)
Q Consensus 159 IlAtG~~s~~~~p 171 (354)
++|+| ..|+..
T Consensus 281 l~a~G--~~Pn~~ 291 (486)
T TIGR01423 281 MMAIG--RVPRTQ 291 (486)
T ss_pred EEeeC--CCcCcc
Confidence 99999 666654
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-07 Score=89.41 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=84.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCcc-ceeecCCCCCCC---CCCCCCCCC----------cccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVG-GSWIYTSETESD---PLGVDPNRY----------PVHSSL 65 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~g-g~~~~~~~~~~~---~~~~~~~~~----------~~~~~~ 65 (354)
.+||+|||+|.||++||..+++. |.+|+|+||.+..+ +.+....+..+. +-...|+.. ..+...
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~ 88 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA 88 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHH
Confidence 36899999999999999999987 68999999976532 221111000000 000111100 011111
Q ss_pred cccchhcccccccccc--CCCCCccCCCC----C-CC--CCCC--CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 66 YKSLRVNLPRELMGFQ--AYPFVARNYEG----S-VD--LRRY--PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 66 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~-~~--~~~~--~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
...+..+.+.....+. +.++....... . .. ...+ +....+.+.+.+.+.+.+++ +..++.++++..+
T Consensus 89 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~ 166 (554)
T PRK08275 89 VYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVL--ITNRIMATRLLTD 166 (554)
T ss_pred HHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCE--EEcceEEEEEEEc
Confidence 1111111111111111 11111100000 0 00 0011 23457888888888888888 9999999999876
Q ss_pred CCCc-EEEEEee-cCCceEEEEeCEEEEeeCCCC
Q 018550 135 ESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 135 ~~~~-~~v~~~~-g~~~~~~~~~d~vIlAtG~~s 166 (354)
+++. ..+...+ ..+....+.++.||+|||..+
T Consensus 167 ~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 167 ADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred CCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 3232 2233222 222335689999999999654
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=90.15 Aligned_cols=162 Identities=14% Similarity=0.103 Sum_probs=85.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC---CcEEEEeeCCCccceeecCCCCCCCCC----CCCCCCC----------ccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPL----GVDPNRY----------PVHSS 64 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g---~~v~lie~~~~~gg~~~~~~~~~~~~~----~~~~~~~----------~~~~~ 64 (354)
..||+|||+|.||++||..+++.| .+|+|+||....++......+...... +..++.. +.+..
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~~ 84 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQD 84 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCHH
Confidence 468999999999999999999998 899999998766654443322111100 1111110 01111
Q ss_pred ccccchhcccccccccc--CCCCCccCCC----CCCCCCCCC--------CHHHHHHHHHHHHHH-hCCcceEEeceEEE
Q 018550 65 LYKSLRVNLPRELMGFQ--AYPFVARNYE----GSVDLRRYP--------GHEEVLRYLQNFARE-FGVDQVVRLHTEVL 129 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~ 129 (354)
....+..+.+.....+. +.++...... .......++ +...+...+.+.+.+ .+++ +..++.++
T Consensus 85 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~--i~~~~~v~ 162 (577)
T PRK06069 85 AVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIH--FYDEHFVT 162 (577)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCE--EEECCEEE
Confidence 11222222222211111 2222110000 000000111 224566666666655 5777 88999999
Q ss_pred EEEEeCCCcE-EEEEee-cCCceEEEEeCEEEEeeCCCC
Q 018550 130 NARLVESNKW-KVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 130 ~i~~~~~~~~-~v~~~~-g~~~~~~~~~d~vIlAtG~~s 166 (354)
++..++ +.. .+...+ .++....+.++.||+|||..+
T Consensus 163 ~Li~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 163 SLIVEN-GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred EEEEEC-CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 998655 432 222212 122235789999999999654
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=88.85 Aligned_cols=161 Identities=18% Similarity=0.165 Sum_probs=85.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC--CCCCCC----------Ccccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNR----------YPVHSSLYKSL 69 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~ 69 (354)
..||+|||+|.||++||..+++ |.+|+|+||.+..++......+...... ...++. ...+......+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 4699999999999999999976 8999999998766655443322111000 011110 01111111122
Q ss_pred hhcccccccccc--CCCCCccC--------CCCCCCCC-CC----CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 70 RVNLPRELMGFQ--AYPFVARN--------YEGSVDLR-RY----PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
..+.+.....+. +.++.... ........ .+ .....+.+.+.+.+. .+++ +..++.++++..+
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~--i~~~~~v~~Li~~ 158 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVT--VVEQEMVIDLIIE 158 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCE--EEECeEhhheeec
Confidence 222221111111 22222100 00000000 00 122456666666554 4777 8899999999765
Q ss_pred CCCc-EEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 135 ESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 135 ~~~~-~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+ +. ..+...+.++....+.++.||+|||.++.
T Consensus 159 ~-g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 159 N-GRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred C-CEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 5 43 33444443334457899999999996543
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-07 Score=89.42 Aligned_cols=162 Identities=16% Similarity=0.131 Sum_probs=86.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC--CCCCCC----------Ccccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNR----------YPVHSSLYKSL 69 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~ 69 (354)
..||+|||+|.||++||..+++.| +|+|+||.+..++......+..+-.. ...++. ...+......+
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~ 107 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRVV 107 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHHH
Confidence 368999999999999999999999 99999998776654443322111000 001110 01111112222
Q ss_pred hhcccccccccc--CCCCCccC--------CCCCCCCCC-C---CCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEe
Q 018550 70 RVNLPRELMGFQ--AYPFVARN--------YEGSVDLRR-Y---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~-~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~ 134 (354)
..+.+.....+. +.++.... ......... + .....+...+.+.+.+. +++ +..++.++++..+
T Consensus 108 ~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~--i~~~~~~~~Li~~ 185 (594)
T PLN02815 108 CTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNIT--FFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCE--EEeceEhheeeee
Confidence 222222111111 12221100 000000000 0 12356777777766554 777 8899999998875
Q ss_pred CCC----cEEEEEee-cCCceEEEEeCEEEEeeCCCC
Q 018550 135 ESN----KWKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 135 ~~~----~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s 166 (354)
+++ ..-+...+ .++....+.++.||||||.+.
T Consensus 186 ~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 186 QDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred cCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 423 23343322 233346789999999999654
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=86.44 Aligned_cols=99 Identities=20% Similarity=0.309 Sum_probs=75.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|++|+.+|..|++.|.+|+++++.+.+.. . .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~---~--------------------------------------~ 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN---K--------------------------------------L 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc---c--------------------------------------c
Confidence 6899999999999999999999999999998653310 0 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+. .++.+.+.+.+++.|++ +.+++++.++..++ .. +...++. ++.+|.||+|+
T Consensus 177 ----------------~~--~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~--~~-v~~~~g~----~i~~D~vi~a~ 229 (427)
T TIGR03385 177 ----------------FD--EEMNQIVEEELKKHEIN--LRLNEEVDSIEGEE--RV-KVFTSGG----VYQADMVILAT 229 (427)
T ss_pred ----------------cC--HHHHHHHHHHHHHcCCE--EEeCCEEEEEecCC--CE-EEEcCCC----EEEeCEEEECC
Confidence 00 55667778888888998 89999999997643 23 3444543 79999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| ..|...
T Consensus 230 G--~~p~~~ 236 (427)
T TIGR03385 230 G--IKPNSE 236 (427)
T ss_pred C--ccCCHH
Confidence 9 565543
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=85.02 Aligned_cols=129 Identities=16% Similarity=0.265 Sum_probs=73.4
Q ss_pred eEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccc--eeecCCCCCCCCCCCCCCC--Cc--ccccccccchhcccc
Q 018550 4 HVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGG--SWIYTSETESDPLGVDPNR--YP--VHSSLYKSLRVNLPR 75 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg--~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~ 75 (354)
||+|||||+||+++|..|++. |++|.++|+.+..++ +|..+.. ...+.. .+ .-...|.......+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~------~~~~~~~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDS------DLSDAQHAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceeccc------ccchhhhhhhhhhheEeCCCCEEECcc
Confidence 699999999999999999987 999999999876654 3332210 000000 00 001122221111110
Q ss_pred ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
....+ ........+.++.+++.+.+ +.. +.++++|.+++ . +.+++ .+|. ++.+
T Consensus 75 ~~~~l-------------~~~Y~~I~r~~f~~~l~~~l---~~~--i~~~~~V~~v~--~-~~v~l--~dg~----~~~A 127 (370)
T TIGR01789 75 YRRKL-------------KTAYRSMTSTRFHEGLLQAF---PEG--VILGRKAVGLD--A-DGVDL--APGT----RINA 127 (370)
T ss_pred hhhhc-------------CCCceEEEHHHHHHHHHHhh---ccc--EEecCEEEEEe--C-CEEEE--CCCC----EEEe
Confidence 00000 01112234466766665433 333 66688999883 2 44444 5554 8999
Q ss_pred CEEEEeeCCC
Q 018550 156 DAVVVCNGHF 165 (354)
Q Consensus 156 d~vIlAtG~~ 165 (354)
+.||.|+|..
T Consensus 128 ~~VI~A~G~~ 137 (370)
T TIGR01789 128 RSVIDCRGFK 137 (370)
T ss_pred eEEEECCCCC
Confidence 9999999954
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-07 Score=85.56 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=74.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~---------------------------------------- 208 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHL---------------------------------------- 208 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccccc----------------------------------------
Confidence 3689999999999999999999999999999865431000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+... .+++ ++++++|.+++.++ +...++..++. ++++|.|++|
T Consensus 209 -----d---------------~~~~~~l~~~~~-~gI~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~~D~vl~a 260 (452)
T TIGR03452 209 -----D---------------EDISDRFTEIAK-KKWD--IRLGRNVTAVEQDG-DGVTLTLDDGS----TVTADVLLVA 260 (452)
T ss_pred -----C---------------HHHHHHHHHHHh-cCCE--EEeCCEEEEEEEcC-CeEEEEEcCCC----EEEcCEEEEe
Confidence 0 444455554433 4677 89999999998765 55666665543 7999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 261 ~G--~~pn~~ 268 (452)
T TIGR03452 261 TG--RVPNGD 268 (452)
T ss_pred ec--cCcCCC
Confidence 99 666654
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-07 Score=88.10 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=87.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCC--CCCC----------CCcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLG--VDPN----------RYPVHSSLYK 67 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~--~~~~----------~~~~~~~~~~ 67 (354)
..||+|||+|.||++||..+++. |.+|+|+||....++......+......+ ..++ ..+.+.....
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 46899999999999999999987 57999999987666554443221110000 0111 0011111222
Q ss_pred cchhcccccccccc--CCCCCccC---C-----CCCCCCCC-C---CCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEE
Q 018550 68 SLRVNLPRELMGFQ--AYPFVARN---Y-----EGSVDLRR-Y---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR 132 (354)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~---~-----~~~~~~~~-~---~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~ 132 (354)
.+..+.+..+..+. +.++.... . ........ + .....+...+.+.+.+. ++. +..++.++++.
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li 160 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIM--RYDEWFVTDLL 160 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCE--EEeCeEEEEEE
Confidence 22233332222221 22222110 0 00000000 0 13456777777766553 676 88899999998
Q ss_pred EeCCCcEEEEE-eecCCceEEEEeCEEEEeeCCCCC
Q 018550 133 LVESNKWKVKS-RKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 133 ~~~~~~~~v~~-~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
.+++...-+.. ...++....+.++.||+|||..+.
T Consensus 161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 161 VDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred eeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 76522222222 212233467899999999997554
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-07 Score=86.80 Aligned_cols=103 Identities=17% Similarity=0.344 Sum_probs=77.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~----------------------------------------- 275 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK----------------------------------------- 275 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-----------------------------------------
Confidence 368999999999999999999999999999987533100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+.+.+.+++.|++ +.++..+.+++..+++...+...++. .++++|.|++|
T Consensus 276 -~----d--------------~~i~~~l~~~L~~~GV~--i~~~~~V~~I~~~~~~~v~v~~~~~~---~~i~aD~VlvA 331 (561)
T PTZ00058 276 -F----D--------------ETIINELENDMKKNNIN--IITHANVEEIEKVKEKNLTIYLSDGR---KYEHFDYVIYC 331 (561)
T ss_pred -C----C--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCCCcEEEEECCCC---EEEECCEEEEC
Confidence 0 0 56677778888888998 99999999998654234444443322 47999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|...
T Consensus 332 ~G--r~Pn~~ 339 (561)
T PTZ00058 332 VG--RSPNTE 339 (561)
T ss_pred cC--CCCCcc
Confidence 99 566544
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-07 Score=91.34 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=78.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++|||||+.|+.+|..|++.|.+|+++++.+.+- .. .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll---~~--------------------------------------~ 179 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM---AK--------------------------------------Q 179 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh---hh--------------------------------------h
Confidence 689999999999999999999999999999865320 00 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+ . ......+.+.+++.|++ +++++.++++..++ ....+.+.+|. ++++|.||+|+
T Consensus 180 l----d--------------~~~~~~l~~~l~~~GV~--v~~~~~v~~i~~~~-~~~~v~~~dG~----~i~~D~Vi~a~ 234 (785)
T TIGR02374 180 L----D--------------QTAGRLLQRELEQKGLT--FLLEKDTVEIVGAT-KADRIRFKDGS----SLEADLIVMAA 234 (785)
T ss_pred c----C--------------HHHHHHHHHHHHHcCCE--EEeCCceEEEEcCC-ceEEEEECCCC----EEEcCEEEECC
Confidence 0 0 55667778888888999 99999999987543 44556676664 89999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| .+|+..
T Consensus 235 G--~~Pn~~ 241 (785)
T TIGR02374 235 G--IRPNDE 241 (785)
T ss_pred C--CCcCcH
Confidence 9 666553
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=9e-07 Score=82.74 Aligned_cols=104 Identities=26% Similarity=0.341 Sum_probs=77.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~---------------------------------------- 208 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLE---------------------------------------- 208 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcch----------------------------------------
Confidence 3689999999999999999999999999999875431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
..++.+.+.+.+++. ++ +++++++.+++.+++...+++..+++ ..++.+|.|++|
T Consensus 209 --------------------d~~~~~~~~~~l~~~-I~--i~~~~~v~~i~~~~~~~v~~~~~~~~--~~~i~~D~vi~a 263 (460)
T PRK06292 209 --------------------DPEVSKQAQKILSKE-FK--IKLGAKVTSVEKSGDEKVEELEKGGK--TETIEADYVLVA 263 (460)
T ss_pred --------------------hHHHHHHHHHHHhhc-cE--EEcCCEEEEEEEcCCceEEEEEcCCc--eEEEEeCEEEEc
Confidence 056667777777776 87 89999999998654213444332332 347999999999
Q ss_pred eCCCCCcccCC
Q 018550 162 NGHFSVPRLAQ 172 (354)
Q Consensus 162 tG~~s~~~~p~ 172 (354)
+| ..|+...
T Consensus 264 ~G--~~p~~~~ 272 (460)
T PRK06292 264 TG--RRPNTDG 272 (460)
T ss_pred cC--CccCCCC
Confidence 99 6777653
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-07 Score=88.49 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=86.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCC--CCCCCC----------Ccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNR----------YPVHSSLYK 67 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~ 67 (354)
..||+|||+|.||++||..+++.| .+|+|+||....++......+...... ...++. .+.+.....
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 83 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVE 83 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHHH
Confidence 468999999999999999999874 799999998766655444322111000 011110 011111222
Q ss_pred cchhcccccccccc--CCCCCccCC--------CCCCCCCCC----CCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEE
Q 018550 68 SLRVNLPRELMGFQ--AYPFVARNY--------EGSVDLRRY----PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR 132 (354)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~~----~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~ 132 (354)
.+..+.+.....+. +.++..... ........+ .....+...+.+.+.+. +++ +..++.++++.
T Consensus 84 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li 161 (582)
T PRK09231 84 YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQ--RFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcE--EEeCeEEEEEE
Confidence 22222222211111 222221100 000000000 12345666666655553 666 88899999998
Q ss_pred EeCCCcEE-EEE-eecCCceEEEEeCEEEEeeCCCCC
Q 018550 133 LVESNKWK-VKS-RKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 133 ~~~~~~~~-v~~-~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
.++ +... +.. ...++....+.++.||+|||.++.
T Consensus 162 ~~~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 162 VDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred EeC-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 765 4332 222 112223467899999999997554
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-08 Score=99.85 Aligned_cols=136 Identities=21% Similarity=0.223 Sum_probs=77.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCc---cceeecCCCCCCCCCCCCCCCCcccccccccchhcc-ccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQV---GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL-PRE 76 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 76 (354)
++|+||||||+|+++|..|++. |++|+|+|+.+.. |..+...+.... .+.. ........+.... ...
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~-~L~~------~~~~~~~~~~~~~~~~~ 73 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLG-NLRA------ADPVSAAAIGDAFNHWD 73 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHH-HHHh------cCHHHHHHHHHhcccCC
Confidence 4899999999999999999998 8999999997653 333322211000 0000 0000000000000 000
Q ss_pred cccccCCCCCccCCCCCCCCCC--CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 77 LMGFQAYPFVARNYEGSVDLRR--YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
...+. ...... ...... -..+.++.+.|.+.+.+.+++ ++++++++++.. ....
T Consensus 74 ~~~~~-~~g~~~----~~~g~~~~~i~R~~L~~~L~e~a~~~GV~--i~~g~~v~~i~~-----------------~~~~ 129 (765)
T PRK08255 74 DIDVH-FKGRRI----RSGGHGFAGIGRKRLLNILQARCEELGVK--LVFETEVPDDQA-----------------LAAD 129 (765)
T ss_pred ceEEE-ECCEEE----EECCeeEecCCHHHHHHHHHHHHHHcCCE--EEeCCccCchhh-----------------hhcC
Confidence 00000 000000 000111 145789999999999999988 899888876531 1347
Q ss_pred eCEEEEeeCCCCCcc
Q 018550 155 FDAVVVCNGHFSVPR 169 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~ 169 (354)
+|.||.|+|.+|..+
T Consensus 130 ~D~VVgADG~~S~vR 144 (765)
T PRK08255 130 ADLVIASDGLNSRIR 144 (765)
T ss_pred CCEEEEcCCCCHHHH
Confidence 899999999877554
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.9e-08 Score=83.82 Aligned_cols=162 Identities=20% Similarity=0.223 Sum_probs=84.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC----ccceeecCCCCC-CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ----VGGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~----~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
..||+|||||.+|.++|..|++.|.+|.+|||+-. +-|-+.+.++.. ...+|+.-.-..++.........+....
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk 124 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGK 124 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCc
Confidence 36899999999999999999999999999999522 111111111110 0111111000000000000000000000
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
-.+.+++............|.+ -.+.+.+++.+... +++ ..+..|.++-.+++--..++.++..+++.+..+
T Consensus 125 ---~v~~pyP~~~f~~d~~GrsFhn-GRFvq~lR~ka~slpNV~---~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~A 197 (509)
T KOG1298|consen 125 ---EVDLPYPLKNFPSDPSGRSFHN-GRFVQRLRKKAASLPNVR---LEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFA 197 (509)
T ss_pred ---eeeccCCCcCCCCCcccceeec-cHHHHHHHHHHhcCCCeE---EeeeeHHHHHhccCeEEeEEEecCCCceEEEec
Confidence 0022332221111112233333 45666777666543 554 345677777666533344666666666678899
Q ss_pred CEEEEeeCCCCCccc
Q 018550 156 DAVVVCNGHFSVPRL 170 (354)
Q Consensus 156 d~vIlAtG~~s~~~~ 170 (354)
..-|+|+|.+|+-|.
T Consensus 198 pLTvVCDGcfSnlRr 212 (509)
T KOG1298|consen 198 PLTVVCDGCFSNLRR 212 (509)
T ss_pred ceEEEecchhHHHHH
Confidence 999999999876554
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.7e-07 Score=83.88 Aligned_cols=96 Identities=18% Similarity=0.244 Sum_probs=75.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~----------------------------------------- 187 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLM----------------------------------------- 187 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhc-----------------------------------------
Confidence 689999999999999999999999999999865431100
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
. .++.+.+.+.+++.|++ ++++++|.+++. . .+++.++. ++.+|.|++|+
T Consensus 188 -----d--------------~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~---~--~v~~~~g~----~~~~D~vl~a~ 237 (438)
T PRK13512 188 -----D--------------ADMNQPILDELDKREIP--YRLNEEIDAING---N--EVTFKSGK----VEHYDMIIEGV 237 (438)
T ss_pred -----C--------------HHHHHHHHHHHHhcCCE--EEECCeEEEEeC---C--EEEECCCC----EEEeCEEEECc
Confidence 0 56677778888888998 999999999863 2 35555543 78999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| .+|+..
T Consensus 238 G--~~pn~~ 244 (438)
T PRK13512 238 G--THPNSK 244 (438)
T ss_pred C--CCcChH
Confidence 9 666543
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.7e-08 Score=84.29 Aligned_cols=37 Identities=35% Similarity=0.491 Sum_probs=33.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~ 37 (354)
++.+|+|||||.+|++.|..|.+.|++|+|+|+...+
T Consensus 1 ~~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 1 KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 4678999999999999999999999999999997654
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-07 Score=87.87 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=85.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCC-----CCCCCCCC----------ccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-----LGVDPNRY----------PVHSSLY 66 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~-----~~~~~~~~----------~~~~~~~ 66 (354)
+.||+|||+|.||++||.++++.|.+|+|+||....++......+..+-. ....|+.. +.+....
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 46999999999999999999999999999999866554433322211100 01111110 1111112
Q ss_pred ccchhcccccccccc--CCCCCccC--------CCCCCCCC-CC---CCHHHHHHHHHHHHHHhC----CcceEEeceEE
Q 018550 67 KSLRVNLPRELMGFQ--AYPFVARN--------YEGSVDLR-RY---PGHEEVLRYLQNFAREFG----VDQVVRLHTEV 128 (354)
Q Consensus 67 ~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~----~~~~v~~~~~v 128 (354)
..+..+.+.....+. +.++.... ........ .+ .....+...+.+.+.+.+ ++ +..++.+
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~--i~~~~~~ 160 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVT--KYEGWEF 160 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcE--EEeeEEE
Confidence 222222222111111 22221100 00000000 01 134567777777766543 44 7778888
Q ss_pred EEEEEeCCC-cEEEEEeec-CCceEEEEeCEEEEeeCCCCC
Q 018550 129 LNARLVESN-KWKVKSRKK-DDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 129 ~~i~~~~~~-~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+++..++++ ..-+...+. ++....+.++.||+|||.++.
T Consensus 161 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 161 LGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred EEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 888865323 233443332 223357889999999997554
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-07 Score=88.32 Aligned_cols=44 Identities=36% Similarity=0.475 Sum_probs=39.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~ 45 (354)
.+||+|||+|.+|+++|..+++.|.+|+||||.+.+||.+....
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~ 55 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSG 55 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccC
Confidence 47999999999999999999999999999999887887766543
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.6e-07 Score=84.93 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=76.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.. + +..
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~---l~~-------------------------------------- 225 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-L---LFR-------------------------------------- 225 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-C---CCc--------------------------------------
Confidence 3689999999999999999999999999998742 1 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. ..++.+.+.+.+++.|++ +++++++.++..++ +.+.+...++ ++.+|.||+|
T Consensus 226 -----~--------------d~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~g-----~i~aD~VlvA 278 (479)
T PRK14727 226 -----E--------------DPLLGETLTACFEKEGIE--VLNNTQASLVEHDD-NGFVLTTGHG-----ELRAEKLLIS 278 (479)
T ss_pred -----c--------------hHHHHHHHHHHHHhCCCE--EEcCcEEEEEEEeC-CEEEEEEcCC-----eEEeCEEEEc
Confidence 0 056677888888888998 99999999998765 5566655433 6899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 279 ~G--~~pn~~ 286 (479)
T PRK14727 279 TG--RHANTH 286 (479)
T ss_pred cC--CCCCcc
Confidence 99 566554
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-07 Score=84.28 Aligned_cols=59 Identities=22% Similarity=0.141 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+..-+...+.+.|... +..++.+..+.... ..+.+.+.++ ++.+|.||+|+|.|+..
T Consensus 156 ~~~~~~l~~~~~~~G~~~-~~~~~~~~~~~~~~-~~~~v~t~~g-----~i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 156 RLLTRALAAAAEELGVVI-IEGGTPVTSLERDG-RVVGVETDGG-----TIEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHHHHHHHhcCCeE-EEccceEEEEEecC-cEEEEEeCCc-----cEEeCEEEEcCchHHHH
Confidence 566677777777777441 55688888888753 4677888776 59999999999986554
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-07 Score=88.19 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=37.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
..||||||+|.+|+++|..++++|.+|+|+||.+..||....
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~~ 52 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTAL 52 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHHH
Confidence 468999999999999999999999999999998877765443
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.1e-07 Score=84.45 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=76.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++...+ ..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l----~~-------------------------------------- 215 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL----SQ-------------------------------------- 215 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC----CC--------------------------------------
Confidence 368999999999999999999999999999863211 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+++.+++.|++ ++.++++.+++.++ +.+.+.+.++ ++.+|.||+|
T Consensus 216 -----~~--------------~~~~~~l~~~l~~~GI~--v~~~~~v~~i~~~~-~~~~v~~~~~-----~i~~D~vi~a 268 (468)
T PRK14694 216 -----ED--------------PAVGEAIEAAFRREGIE--VLKQTQASEVDYNG-REFILETNAG-----TLRAEQLLVA 268 (468)
T ss_pred -----CC--------------HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEECCC-----EEEeCEEEEc
Confidence 00 56677788888888998 99999999998655 5455544332 6999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 269 ~G--~~pn~~ 276 (468)
T PRK14694 269 TG--RTPNTE 276 (468)
T ss_pred cC--CCCCcC
Confidence 99 566554
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-07 Score=85.50 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 103 EEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+.+.+.+.+++.+ ++ +.++++|+++...+++.|.+++.+ ..+...++.+++||+|+|.|+..
T Consensus 183 ~~l~~aL~~~a~~~Ggv~--i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFE--LQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred HHHHHHHHHHHHhCCCeE--EEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 567777777777776 67 899999999998653558887654 11112368999999999987643
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=86.72 Aligned_cols=43 Identities=28% Similarity=0.424 Sum_probs=39.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~ 45 (354)
.+||||||+| +|+++|..+++.|.+|+|+||.+.+||++....
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~g 58 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSG 58 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcC
Confidence 4799999999 899999999999999999999989999887764
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-07 Score=82.47 Aligned_cols=59 Identities=20% Similarity=0.082 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-EEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
...+...+.+.+.+.|++ +..+++|+++...+++. +.+.+.++ ++.++.||+|+|.|+.
T Consensus 182 p~~l~~~l~~~a~~~Gv~--~~~~~~V~~i~~~~~~~~~~v~t~~g-----~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVD--IIQNCEVTGFIRRDGGRVIGVETTRG-----FIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEeCCc-----eEECCEEEECCChhhH
Confidence 345666667777888988 88999999998643243 44666554 6899999999997653
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-07 Score=92.98 Aligned_cols=42 Identities=31% Similarity=0.414 Sum_probs=37.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
..||||||+|.||++||.++++.|.+|+|+||.+..||....
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~ 450 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAK 450 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhh
Confidence 368999999999999999999999999999999888876543
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-07 Score=89.00 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
..+...+.+.+.+.+++ +..++.++++..+++....+...+ .++....+.++.||+|||.++.
T Consensus 158 ~~l~~~L~~~~~~~gv~--i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVP--VHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred HHHHHHHHHHHHhCCCE--EEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 44556666777777888 899999999987652233344332 2333457889999999997553
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.6e-07 Score=87.86 Aligned_cols=101 Identities=20% Similarity=0.164 Sum_probs=78.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++|||||+.|+.+|..|++.|.+|+|+++.+.+-. . .
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~---~--------------------------------------~ 184 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA---E--------------------------------------Q 184 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh---h--------------------------------------h
Confidence 5799999999999999999999999999998653210 0 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEEEEEeecCCceEEEEeCEEEEe
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. ....+.+++.+++.|++ ++++..+.+|..++. ....+...++. ++.+|.||+|
T Consensus 185 ----ld--------------~~~~~~l~~~L~~~GV~--v~~~~~v~~I~~~~~~~~~~v~~~dG~----~i~~D~Vv~A 240 (847)
T PRK14989 185 ----LD--------------QMGGEQLRRKIESMGVR--VHTSKNTLEIVQEGVEARKTMRFADGS----ELEVDFIVFS 240 (847)
T ss_pred ----cC--------------HHHHHHHHHHHHHCCCE--EEcCCeEEEEEecCCCceEEEEECCCC----EEEcCEEEEC
Confidence 00 56677888888889999 999999999976431 33456666664 8999999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| .+|+.
T Consensus 241 ~G--~rPn~ 247 (847)
T PRK14989 241 TG--IRPQD 247 (847)
T ss_pred CC--cccCc
Confidence 99 66664
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-07 Score=88.22 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=31.1
Q ss_pred EEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc
Q 018550 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38 (354)
Q Consensus 5 vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g 38 (354)
|+|||+|.||++||..+++.|.+|+|+||.+.++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 6999999999999999999999999999986443
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6e-07 Score=86.08 Aligned_cols=99 Identities=19% Similarity=0.312 Sum_probs=77.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.. + +..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~---l~~-------------------------------------- 307 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARST-L---FFR-------------------------------------- 307 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-c---ccc--------------------------------------
Confidence 3689999999999999999999999999999742 1 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ +++++.+.++..++ +.+.+...++ ++.+|.|++|
T Consensus 308 -----~d--------------~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~-~~~~v~~~~~-----~i~~D~vi~a 360 (561)
T PRK13748 308 -----ED--------------PAIGEAVTAAFRAEGIE--VLEHTQASQVAHVD-GEFVLTTGHG-----ELRADKLLVA 360 (561)
T ss_pred -----cC--------------HHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEecCC-----eEEeCEEEEc
Confidence 00 56777888888888999 99999999998755 5555554432 6899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 361 ~G--~~pn~~ 368 (561)
T PRK13748 361 TG--RAPNTR 368 (561)
T ss_pred cC--CCcCCC
Confidence 99 666654
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.7e-07 Score=84.55 Aligned_cols=43 Identities=37% Similarity=0.491 Sum_probs=38.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~ 44 (354)
..||+|||+|++|+++|..++++|.+|+|+||....||.....
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s 51 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFS 51 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcccee
Confidence 4689999999999999999999999999999998887665544
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-07 Score=85.52 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=39.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~ 45 (354)
++||+|||+|.+|+++|..+++.|.+|+|||+.+..||.+....
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~ 49 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSG 49 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceec
Confidence 57899999999999999999999999999999877887765543
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-07 Score=88.76 Aligned_cols=161 Identities=14% Similarity=0.069 Sum_probs=83.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC--CCCCCC----------Ccccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL--GVDPNR----------YPVHSSLYKSL 69 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~ 69 (354)
..||+|||+|.||++||..+++ |.+|+|+||.+..++......+...-.. ...++. ...+..+...+
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~~ 87 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRFL 87 (553)
T ss_pred cCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4689999999999999999964 9999999998766654433322111000 001110 01111112222
Q ss_pred hhcccccccccc--CCCCCccC-------CCCCCCCCC-C---CCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeC
Q 018550 70 RVNLPRELMGFQ--AYPFVARN-------YEGSVDLRR-Y---PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVE 135 (354)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~-~---~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~ 135 (354)
..+.+.....+. +.++.... ......... + .....+...+.+.+.+ .+++ +..++.++++..++
T Consensus 88 ~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~--i~~~~~v~~Li~~~ 165 (553)
T PRK07395 88 VEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIE--IISQALALSLWLEP 165 (553)
T ss_pred HHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcE--EEECcChhhheecC
Confidence 222221111111 11221100 000000000 0 1235667777776654 4787 89999999998753
Q ss_pred C-C-cEEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 136 S-N-KWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 136 ~-~-~~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
+ + ...+...+ ++....+.++.||+|||..+
T Consensus 166 ~~g~v~Gv~~~~-~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 166 ETGRCQGISLLY-QGQITWLRAGAVILATGGGG 197 (553)
T ss_pred CCCEEEEEEEEE-CCeEEEEEcCEEEEcCCCCc
Confidence 1 2 22233322 22334688999999999643
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.8e-07 Score=82.84 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=37.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc----CCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~----g~~v~lie~~~~~gg~~~~ 43 (354)
+++++|||||.||+++|..|.+. |.+|+|+|+.+.+||.+.-
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~ 67 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDG 67 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccC
Confidence 46899999999999999999995 6799999999999988653
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.4e-08 Score=91.09 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3689999999999999999999999999999964
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=8e-07 Score=83.59 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=77.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++. .+ +..
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~---l~~--------------------------------------- 219 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IP---LRG--------------------------------------- 219 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cc---ccc---------------------------------------
Confidence 58999999999999999999999999999863 21 000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+ . .++.+.+++.+++.+++ +..++.+.++...+ +...+...++. ++.+|.|++|+
T Consensus 220 ~----d--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~v~~~~-~~~~v~~~~g~----~i~~D~vl~a~ 274 (499)
T PTZ00052 220 F----D--------------RQCSEKVVEYMKEQGTL--FLEGVVPINIEKMD-DKIKVLFSDGT----TELFDTVLYAT 274 (499)
T ss_pred C----C--------------HHHHHHHHHHHHHcCCE--EEcCCeEEEEEEcC-CeEEEEECCCC----EEEcCEEEEee
Confidence 0 0 56677888888888998 99999999888755 44556665553 68999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| ..|+..
T Consensus 275 G--~~pn~~ 281 (499)
T PTZ00052 275 G--RKPDIK 281 (499)
T ss_pred C--CCCCcc
Confidence 9 666654
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=82.27 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=77.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++|||||+.|+.+|..|++.|.+|+++++. .+ +..
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~---l~~--------------------------------------- 217 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL---LRG--------------------------------------- 217 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cc---ccc---------------------------------------
Confidence 57999999999999999999999999999873 22 000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+ . .++.+++++.+++.|++ +++++.+.++...+ +...+...++.+ ..++++|.|++|+
T Consensus 218 ~----d--------------~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~~~~-~~~i~~D~vl~a~ 275 (484)
T TIGR01438 218 F----D--------------QDCANKVGEHMEEHGVK--FKRQFVPIKVEQIE-AKVKVTFTDSTN-GIEEEYDTVLLAI 275 (484)
T ss_pred c----C--------------HHHHHHHHHHHHHcCCE--EEeCceEEEEEEcC-CeEEEEEecCCc-ceEEEeCEEEEEe
Confidence 0 0 66777888888888999 99999998988755 455565544321 2378999999999
Q ss_pred CCCCCcccC
Q 018550 163 GHFSVPRLA 171 (354)
Q Consensus 163 G~~s~~~~p 171 (354)
| ..|+..
T Consensus 276 G--~~pn~~ 282 (484)
T TIGR01438 276 G--RDACTR 282 (484)
T ss_pred c--CCcCCC
Confidence 9 566554
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.8e-07 Score=84.06 Aligned_cols=41 Identities=39% Similarity=0.533 Sum_probs=34.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
..||+|||+|.||++||..+++. .+|+|+||....++....
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~ 48 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFY 48 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhh
Confidence 46899999999999999999987 899999998766654333
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=82.65 Aligned_cols=41 Identities=32% Similarity=0.476 Sum_probs=36.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
..||||||+| +|+++|.++++.|.+|+|+||.+..||....
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~ 47 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAY 47 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceec
Confidence 4699999999 9999999999999999999998777765544
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=82.97 Aligned_cols=44 Identities=32% Similarity=0.484 Sum_probs=39.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~ 45 (354)
..||+|||+|.+|+++|..+++.|.+|+|+|+.+.+||.+....
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~ 51 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSG 51 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccC
Confidence 36899999999999999999999999999999888888766543
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-07 Score=77.18 Aligned_cols=164 Identities=20% Similarity=0.270 Sum_probs=93.1
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC-------CCCCCCC--CCCC----------ccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-------SDPLGVD--PNRY----------PVHSS 64 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~-------~~~~~~~--~~~~----------~~~~~ 64 (354)
.|||||+|.||++++..+...+-.|+++|+...+||.-..+.... +...+.. |+-. -....
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 599999999999999999998878999999988987766543322 1111111 1111 11111
Q ss_pred ccccchhcccccccccc-CCCCCccC---C------CCCCCCCCCCCHHHHHHHHHHHHHHhCCc----ceEEeceEEEE
Q 018550 65 LYKSLRVNLPRELMGFQ-AYPFVARN---Y------EGSVDLRRYPGHEEVLRYLQNFAREFGVD----QVVRLHTEVLN 130 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~-~~~~~~~~---~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~v~~~~~v~~ 130 (354)
+...+..+.+.....+. .|...... + .-.......|+..++...+....+++..+ ..+..+++|++
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~ 170 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD 170 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence 22222222222211111 01111000 0 00112223445566666665555543211 23778999999
Q ss_pred EEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 131 ARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 131 i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
|.++++.-..|..-+..++...+.++.||+|||.++.
T Consensus 171 il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 171 ILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred eecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 9976634455666566666678899999999998664
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=83.05 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=76.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~---------------------------------------- 291 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGF---------------------------------------- 291 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccccc----------------------------------------
Confidence 3689999999999999999999999999999865431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++..++.+.+++.|++ +++++.+.++...+++...+...++ ....+|.|++|
T Consensus 292 ------d--------------~~~~~~l~~~L~~~GV~--i~~~~~v~~i~~~~~g~v~v~~~~g----~~~~~D~Viva 345 (558)
T PLN02546 292 ------D--------------EEVRDFVAEQMSLRGIE--FHTEESPQAIIKSADGSLSLKTNKG----TVEGFSHVMFA 345 (558)
T ss_pred ------C--------------HHHHHHHHHHHHHCCcE--EEeCCEEEEEEEcCCCEEEEEECCe----EEEecCEEEEe
Confidence 0 66777888888888999 9999999999865424344443322 23458999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 346 ~G--~~Pnt~ 353 (558)
T PLN02546 346 TG--RKPNTK 353 (558)
T ss_pred ec--cccCCC
Confidence 99 666654
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.1e-07 Score=85.22 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=84.4
Q ss_pred eEEEEcCChHHHHHHHHHH----HcCCcEEEEeeCCCccceeecCCC--CCCCCCC-----CCCCCC----------ccc
Q 018550 4 HVAVIGAGAAGLVVGHELL----REGHTVVVYEKGEQVGGSWIYTSE--TESDPLG-----VDPNRY----------PVH 62 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~----~~g~~v~lie~~~~~gg~~~~~~~--~~~~~~~-----~~~~~~----------~~~ 62 (354)
||+|||+|.||++||.+++ +.|.+|+|+||....+... .+.+ ..+..+. ..|+.. +.+
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 6999999999999999998 6799999999975432222 1211 0111110 111110 111
Q ss_pred ccccccchhcccccccccc--CCCCCccCCCCCCCCC----CCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC-
Q 018550 63 SSLYKSLRVNLPRELMGFQ--AYPFVARNYEGSVDLR----RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE- 135 (354)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~- 135 (354)
..+...+..+.+..+..+. +.++............ .......+...+...+.+.+++ +..++.++++..++
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~--i~~~~~v~~Ll~d~~ 157 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGD--IFERIFIVKLLLDKN 157 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCe--EEcccEEEEEEecCC
Confidence 1122223333333222222 2223211000000000 0011234444555555554555 88899999998754
Q ss_pred --CCcEEEEEee-cCCceEEEEeCEEEEeeCCCCCcccC
Q 018550 136 --SNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 136 --~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
+....+...+ .++....+.++.||+|||.++....|
T Consensus 158 ~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~ 196 (614)
T TIGR02061 158 TPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRP 196 (614)
T ss_pred CCCeEEEEEEEEeCCCcEEEEECCEEEECCCccccccCC
Confidence 1233344322 22334678999999999987654433
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.7e-07 Score=81.95 Aligned_cols=99 Identities=27% Similarity=0.441 Sum_probs=78.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++|||+|+.|+.+|..|+++|++|+++|+.+.+++....
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~--------------------------------------- 177 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD--------------------------------------- 177 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh---------------------------------------
Confidence 68999999999999999999999999999998766444321
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEE---EEEeecCCceEEEEeCEEE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK---VKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~---v~~~~g~~~~~~~~~d~vI 159 (354)
..+.+.+.+..+..+++ ++++..+.+++... +... +...++. .+++|.++
T Consensus 178 --------------------~~~~~~~~~~l~~~gi~--~~~~~~~~~i~~~~-~~~~~~~~~~~~~~----~~~~d~~~ 230 (415)
T COG0446 178 --------------------PEVAEELAELLEKYGVE--LLLGTKVVGVEGKG-NTLVVERVVGIDGE----EIKADLVI 230 (415)
T ss_pred --------------------HHHHHHHHHHHHHCCcE--EEeCCceEEEEccc-CcceeeEEEEeCCc----EEEeeEEE
Confidence 34667888888888988 89999999999765 3322 3444443 89999999
Q ss_pred EeeCCCCCcc
Q 018550 160 VCNGHFSVPR 169 (354)
Q Consensus 160 lAtG~~s~~~ 169 (354)
+++| ..|+
T Consensus 231 ~~~g--~~p~ 238 (415)
T COG0446 231 IGPG--ERPN 238 (415)
T ss_pred Eeec--cccc
Confidence 9999 5554
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.1e-08 Score=89.06 Aligned_cols=42 Identities=40% Similarity=0.564 Sum_probs=39.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||+||++||++|.+.|++|+|+|+++.+||....
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEE
Confidence 478999999999999999999999999999999999988654
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-06 Score=79.31 Aligned_cols=91 Identities=31% Similarity=0.409 Sum_probs=71.3
Q ss_pred CeEEEEcCChHHHHHHHHHHH--------------cCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLR--------------EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS 68 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~--------------~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (354)
++|+|||||+.|+.+|..|++ .+.+|+++++.+.+...
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~---------------------------- 225 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS---------------------------- 225 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc----------------------------
Confidence 389999999999999999976 36899999986543110
Q ss_pred chhccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 69 LRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
++ ..+.+++++.+++.|++ ++++++|.++.. + .+.+.+|+
T Consensus 226 ------------------------------~~--~~~~~~~~~~L~~~gV~--v~~~~~v~~v~~---~--~v~~~~g~- 265 (424)
T PTZ00318 226 ------------------------------FD--QALRKYGQRRLRRLGVD--IRTKTAVKEVLD---K--EVVLKDGE- 265 (424)
T ss_pred ------------------------------CC--HHHHHHHHHHHHHCCCE--EEeCCeEEEEeC---C--EEEECCCC-
Confidence 00 56778888888889999 999999999864 2 35566664
Q ss_pred ceEEEEeCEEEEeeCC
Q 018550 149 VVEEETFDAVVVCNGH 164 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~ 164 (354)
++++|.+|.|+|.
T Consensus 266 ---~i~~d~vi~~~G~ 278 (424)
T PTZ00318 266 ---VIPTGLVVWSTGV 278 (424)
T ss_pred ---EEEccEEEEccCC
Confidence 8999999999994
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=82.77 Aligned_cols=43 Identities=35% Similarity=0.607 Sum_probs=37.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC--CccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--QVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~--~~gg~~~~~ 44 (354)
..||+|||+|.||++||..+++.|.+|+|+||.+ ..||.....
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s 48 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWS 48 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceecc
Confidence 4799999999999999999999999999999988 567765443
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=84.23 Aligned_cols=44 Identities=36% Similarity=0.413 Sum_probs=39.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~ 45 (354)
.++|+|||+|.+|+++|..++++|.+|+|+|+.+.+||......
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~ 59 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSA 59 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccC
Confidence 46899999999999999999999999999999888887776543
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-06 Score=83.34 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~---------------------------------------- 351 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLL---------------------------------------- 351 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccC----------------------------------------
Confidence 3689999999999999999999999999999976431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHH-HHhCCcceEEeceEEEEEEEeCCC-cEEEEEee---cCC--------
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESN-KWKVKSRK---KDD-------- 148 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~---g~~-------- 148 (354)
. .++.+++.+.. ++.+++ ++.++.|.++...++. ...+...+ +++
T Consensus 352 ------d--------------~eis~~l~~~ll~~~GV~--I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~ 409 (659)
T PTZ00153 352 ------D--------------ADVAKYFERVFLKSKPVR--VHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMN 409 (659)
T ss_pred ------C--------------HHHHHHHHHHHhhcCCcE--EEcCCEEEEEEecCCceEEEEEEeccccccccccccccc
Confidence 0 55666776654 567888 9999999999875422 24444322 110
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCC
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQ 172 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~ 172 (354)
..+++++|.|++|+| .+|+...
T Consensus 410 ~~~~i~aD~VlvAtG--r~Pnt~~ 431 (659)
T PTZ00153 410 DIKETYVDSCLVATG--RKPNTNN 431 (659)
T ss_pred cceEEEcCEEEEEEC--cccCCcc
Confidence 113799999999999 6666543
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-06 Score=73.45 Aligned_cols=35 Identities=37% Similarity=0.633 Sum_probs=33.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|+|||||.||++|+.+|+++|.++.++.++.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 78999999999999999999999999999999853
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-06 Score=83.04 Aligned_cols=43 Identities=37% Similarity=0.492 Sum_probs=38.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~ 44 (354)
..||+|||+|++|+++|..++++|.+|+||||.+.+||.....
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~ 49 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARS 49 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccccc
Confidence 4689999999999999999999999999999988777765544
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.1e-07 Score=83.45 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=81.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC-ccceeecCCCCCCCCCC--CCCCC----------Cccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-VGGSWIYTSETESDPLG--VDPNR----------YPVHSSLYKS 68 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~-~gg~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~ 68 (354)
..||+|||+|.||++||..++ +.+|+|+||.+. .++......+......+ ..|+. ...+......
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v~~ 86 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVAAL 86 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHHHH
Confidence 468999999999999999997 569999999765 34333322211110011 11110 0111111112
Q ss_pred chhcccccccccc--CCCCCccCC---C---CCC-CC-C-----CCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEE
Q 018550 69 LRVNLPRELMGFQ--AYPFVARNY---E---GSV-DL-R-----RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR 132 (354)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~---~---~~~-~~-~-----~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~ 132 (354)
+..+.+..+..+. +.++..... . ... .. . .-.....+.+.+.+.+.+. +++ +..++.++++.
T Consensus 87 ~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~--i~~~~~v~~Li 164 (513)
T PRK07512 87 ITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSIT--VLEGAEARRLL 164 (513)
T ss_pred HHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCE--EEECcChhhee
Confidence 2222221111111 122211000 0 000 00 0 0012356777777777654 787 88899999987
Q ss_pred EeCCCc-EEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 133 LVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 133 ~~~~~~-~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
.++ +. ..+...+.. ....+.++.||+|||..+
T Consensus 165 ~~~-g~v~Gv~~~~~~-~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 165 VDD-GAVAGVLAATAG-GPVVLPARAVVLATGGIG 197 (513)
T ss_pred ecC-CEEEEEEEEeCC-eEEEEECCEEEEcCCCCc
Confidence 654 43 234433322 124689999999999754
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-06 Score=76.12 Aligned_cols=42 Identities=36% Similarity=0.550 Sum_probs=38.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
..+|+|||+|.+||.+|..|.+.|++|+|+|.++.+||.+..
T Consensus 7 ~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 7 TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 368999999999999999999999999999999999977543
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=79.87 Aligned_cols=150 Identities=18% Similarity=0.093 Sum_probs=84.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccc--cccccchhccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS--SLYKSLRVNLPRELMGF 80 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (354)
+||+|||||.||+.||.+.++.|.++.|+--+..-=|.+.-+|.+. -.....+... ++--.+-.......+++
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIG-----G~~KG~lvrEIDALGG~Mg~~~D~~~IQ~ 79 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIG-----GPGKGHLVREIDALGGLMGKAADKAGIQF 79 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccC-----CcccceeEEeehhccchHHHhhhhcCCch
Confidence 7999999999999999999999999999987544334444333221 0001000000 00001111111111111
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCC-cEEEEEeecCCceEEEEeCEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~~d~v 158 (354)
.-+......+ -.......++..+..+++..++.. ++. .++..|.++..+++. .+.|.+.+|. .+.++.|
T Consensus 80 r~LN~sKGPA--Vra~RaQaDk~~Y~~~mk~~le~~~NL~---l~q~~v~dli~e~~~~v~GV~t~~G~----~~~a~aV 150 (621)
T COG0445 80 RMLNSSKGPA--VRAPRAQADKWLYRRAMKNELENQPNLH---LLQGEVEDLIVEEGQRVVGVVTADGP----EFHAKAV 150 (621)
T ss_pred hhccCCCcch--hcchhhhhhHHHHHHHHHHHHhcCCCce---ehHhhhHHHhhcCCCeEEEEEeCCCC----eeecCEE
Confidence 1000000000 001112234456677777777654 444 566888888876533 5778888886 9999999
Q ss_pred EEeeCCCC
Q 018550 159 VVCNGHFS 166 (354)
Q Consensus 159 IlAtG~~s 166 (354)
|++||.+-
T Consensus 151 VlTTGTFL 158 (621)
T COG0445 151 VLTTGTFL 158 (621)
T ss_pred EEeecccc
Confidence 99999643
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.6e-06 Score=78.00 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEE--EEeecCCceEEEEeCEEEEeeCCCC
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV--KSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v--~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
...+.+.+.+.+++.+++ ++++++|+++..++++.+.+ ...++ ...+.++.||+|||.++
T Consensus 122 g~~l~~~L~~~a~~~Gv~--i~~~~~v~~l~~~~~~g~v~gv~~~~~---~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFDGAHDGPLTTVG---THRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCCCeEEEEEEcCC---cEEEEcCEEEEcCCCcc
Confidence 356788888888888998 99999999998753123333 22222 14789999999999643
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.3e-06 Score=74.31 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=74.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+ ..
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~----~~-------------------------------------- 183 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF----RA-------------------------------------- 183 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc----CC--------------------------------------
Confidence 368999999999999999999999999999986432 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC--CceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--DVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~~~~d~vI 159 (354)
...+.+.+++.+++.+++ +..++.++++..++.+...+++.++. +...++++|.||
T Consensus 184 --------------------~~~~~~~~~~~l~~~gV~--i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv 241 (321)
T PRK10262 184 --------------------EKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF 241 (321)
T ss_pred --------------------CHHHHHHHHhhccCCCeE--EEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEE
Confidence 033445556666666787 88899999997643122234444321 223579999999
Q ss_pred EeeCCCCCcccC
Q 018550 160 VCNGHFSVPRLA 171 (354)
Q Consensus 160 lAtG~~s~~~~p 171 (354)
+|+| ..|+..
T Consensus 242 ~a~G--~~p~~~ 251 (321)
T PRK10262 242 VAIG--HSPNTA 251 (321)
T ss_pred EEeC--CccChh
Confidence 9999 566544
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.1e-07 Score=81.96 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcE--EEEEeecCCceEEEEeCEEEEeeCC
Q 018550 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW--KVKSRKKDDVVEEETFDAVVVCNGH 164 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~--~v~~~~g~~~~~~~~~d~vIlAtG~ 164 (354)
.++..+.++|.+.+.+.|++ +.. .+|+++..++ +++ .|.+.+| .++.+|++|-|+|.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~--~~~-g~V~~v~~~~-~g~i~~v~~~~g----~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVE--VIE-GTVVDVELDE-DGRITAVRLDDG----RTIEADFFIDASGR 209 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-E--EEE-T-EEEEEE-T-TSEEEEEEETTS----EEEEESEEEE-SGG
T ss_pred EeHHHHHHHHHHHHhcCCCE--EEe-CEEEEEEEcC-CCCEEEEEECCC----CEEEEeEEEECCCc
Confidence 36789999999999999999 655 4688888877 554 4555554 38999999999994
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.4e-06 Score=73.27 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=85.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHc------CCcEEEEeeCCCccceeecCCCCCCCCCC---CCCCC-----Cccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETESDPLG---VDPNR-----YPVHSSLYKS 68 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~------g~~v~lie~~~~~gg~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~ 68 (354)
.||+||||||||+++|..|.+. .++|+++||...+|+...-..-+. |.. +.|+- .+.....-+.
T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGavie--p~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIE--PGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeec--cchhhhhCcchhhcCCcccccccccc
Confidence 6899999999999999999764 469999999988886654311100 000 00000 0000000011
Q ss_pred chhccccccccccCC-CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-EEEEEee-
Q 018550 69 LRVNLPRELMGFQAY-PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK- 145 (354)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~- 145 (354)
+.....+..+.++.. ++ ..+.....+..++.+|+-+.++.+|++ +.-+..+.++-.++++. ..+.++|
T Consensus 155 ~~fLt~~~~i~vPv~~pm-------~NhGNYvv~L~~~v~wLg~kAEe~GvE--iyPg~aaSevly~edgsVkGiaT~D~ 225 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPM-------DNHGNYVVSLGQLVRWLGEKAEELGVE--IYPGFAASEVLYDEDGSVKGIATNDV 225 (621)
T ss_pred eeeeccCceeecCCCccc-------ccCCcEEEEHHHHHHHHHHHHHhhCce--eccccchhheeEcCCCcEeeEeeccc
Confidence 111111111111110 00 012222245578999999999999999 77777777877766432 2344433
Q ss_pred -----cCC-----ceEEEEeCEEEEeeCCC
Q 018550 146 -----KDD-----VVEEETFDAVVVCNGHF 165 (354)
Q Consensus 146 -----g~~-----~~~~~~~d~vIlAtG~~ 165 (354)
|.. ..-++.++.-|.|-|+.
T Consensus 226 GI~k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 226 GISKDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred cccCCCCccccccccceecceeEEEecccc
Confidence 110 01467888999999964
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.6e-07 Score=84.87 Aligned_cols=40 Identities=45% Similarity=0.635 Sum_probs=37.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~ 41 (354)
.+||||||||+.|+++|..|+++|++|+|+||++.+||.+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcce
Confidence 5899999999999999999999999999999999998743
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-06 Score=76.57 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=31.7
Q ss_pred EEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeC
Q 018550 122 VRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNG 163 (354)
Q Consensus 122 v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG 163 (354)
++.+++|++++..+++.|.+++.+. .+...++.+|.||+|||
T Consensus 296 l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 296 LLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred EeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 7789999999998756999999883 34457899999999999
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.2e-06 Score=72.91 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCCc
Q 018550 104 EVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 104 ~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.+.+.+-+.+.+. +.. +.++++|++|.+.+++.|.|.+.+- .+...++.+++|++..|..+-+
T Consensus 182 ~LTr~l~~~l~~~~~~~--~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFE--LHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHhCCCcE--EEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 4444445555444 677 9999999999998867799998763 2345799999999999975544
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.7e-07 Score=81.51 Aligned_cols=42 Identities=38% Similarity=0.549 Sum_probs=39.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~ 44 (354)
++|+|+|||.||+++|+.|+++|++|+|+|+++.+||.+.-+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~ 42 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW 42 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeee
Confidence 589999999999999999999999999999999999887654
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.3e-07 Score=83.65 Aligned_cols=41 Identities=29% Similarity=0.587 Sum_probs=37.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeec
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~ 43 (354)
++|+|||||+||++||+.|++.| ++|+|+|+++.+||.+..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 57999999999999999999988 899999999999987544
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.6e-06 Score=82.38 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
.+||+|||+|.||+++|..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 46899999999999999999999999999999753
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=77.11 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=32.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g 38 (354)
.+|+|||||++|+.+|..|+++|++|+|||+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999876554
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.8e-07 Score=83.64 Aligned_cols=42 Identities=43% Similarity=0.569 Sum_probs=38.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|+.|+++|++|+|+|+.+.+||.+..
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 478999999999999999999999999999999999987643
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.1e-06 Score=76.90 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=70.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||+.|+.+|..|++.+.+|+++++.+.+.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-------------------------------------------- 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-------------------------------------------- 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------
Confidence 689999999999999999999999999999764320
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCEEEE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~vIl 160 (354)
. ...+.+.+.. .|++ +++++.++++..+++....+.+.++. +..+++++|.|++
T Consensus 389 --------------------~--~~~l~~~l~~~~gV~--i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~ 444 (515)
T TIGR03140 389 --------------------A--DKVLQDKLKSLPNVD--ILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFV 444 (515)
T ss_pred --------------------h--hHHHHHHHhcCCCCE--EEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence 0 1223334443 4788 89999999997653122235555432 2345799999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| ..|+..
T Consensus 445 a~G--~~Pn~~ 453 (515)
T TIGR03140 445 QIG--LVPNTE 453 (515)
T ss_pred EeC--CcCCch
Confidence 999 666654
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.3e-06 Score=73.00 Aligned_cols=105 Identities=20% Similarity=0.209 Sum_probs=83.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
.+|+++|+|..|+.+|..|...+.+|++|++.+.+--.
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~------------------------------------------ 251 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR------------------------------------------ 251 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh------------------------------------------
Confidence 46999999999999999999999999999987532000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcE-EEEEeecCCceEEEEeCEEEEe
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.- ..++.+.+.++.++.+++ ++.++.+.+++.+.+++. -+.+.++. ++.+|.||+.
T Consensus 252 ---lf--------------~~~i~~~~~~y~e~kgVk--~~~~t~~s~l~~~~~Gev~~V~l~dg~----~l~adlvv~G 308 (478)
T KOG1336|consen 252 ---LF--------------GPSIGQFYEDYYENKGVK--FYLGTVVSSLEGNSDGEVSEVKLKDGK----TLEADLVVVG 308 (478)
T ss_pred ---hh--------------hHHHHHHHHHHHHhcCeE--EEEecceeecccCCCCcEEEEEeccCC----EeccCeEEEe
Confidence 00 067788888999999999 999999999988764333 35566664 9999999999
Q ss_pred eCCCCCcccCCCC
Q 018550 162 NGHFSVPRLAQVP 174 (354)
Q Consensus 162 tG~~s~~~~p~~~ 174 (354)
+| .+|....+.
T Consensus 309 iG--~~p~t~~~~ 319 (478)
T KOG1336|consen 309 IG--IKPNTSFLE 319 (478)
T ss_pred ec--ccccccccc
Confidence 99 788877665
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.6e-06 Score=78.67 Aligned_cols=163 Identities=20% Similarity=0.186 Sum_probs=85.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCC-------CCCC----------Cccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV-------DPNR----------YPVHSS 64 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~-------~~~~----------~~~~~~ 64 (354)
++||+|||+|.||+.||..+++.|.+|.|+||....++......+..+...+. .|+. .+.+..
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dqd 85 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQD 85 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCCHH
Confidence 57999999999999999999999999999999766553322222211111111 1111 111122
Q ss_pred ccccchhcccccccccc--CCCCCccCCC--------C-C---CCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEE
Q 018550 65 LYKSLRVNLPRELMGFQ--AYPFVARNYE--------G-S---VDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVL 129 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~-~---~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~ 129 (354)
....+....|.....+. ..++...... . . .....-.....++..+.+.+.+ .++. +..+..+.
T Consensus 86 ~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~--~~~~~~~~ 163 (562)
T COG1053 86 AVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIE--IFDEYFVL 163 (562)
T ss_pred HHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcch--hhhhhhhh
Confidence 22233333333333222 1122111000 0 0 0000112235566666666655 4444 56677778
Q ss_pred EEEEeCCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCC
Q 018550 130 NARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 130 ~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s 166 (354)
++..++++ ...+...+ .++....+.++.||+|||...
T Consensus 164 ~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 164 DLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred hheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 88766533 23333222 223346778899999999644
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.9e-06 Score=71.99 Aligned_cols=100 Identities=22% Similarity=0.367 Sum_probs=74.3
Q ss_pred eEEEEcCChHHHHHHHHHHHc--------------CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLRE--------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL 69 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~--------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (354)
++|||||||.|+.+|.+|+.. .++|+++|+.+.+ ..
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i----L~-------------------------- 269 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI----LN-------------------------- 269 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH----HH--------------------------
Confidence 689999999999999999853 4689999987633 00
Q ss_pred hhccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
|+ ...+.+|.++...+.++. ++.++.|..+.. ..+....++++
T Consensus 270 -------mF-----------------------dkrl~~yae~~f~~~~I~--~~~~t~Vk~V~~-----~~I~~~~~~g~ 312 (491)
T KOG2495|consen 270 -------MF-----------------------DKRLVEYAENQFVRDGID--LDTGTMVKKVTE-----KTIHAKTKDGE 312 (491)
T ss_pred -------HH-----------------------HHHHHHHHHHHhhhccce--eecccEEEeecC-----cEEEEEcCCCc
Confidence 00 056677777777777888 899999988854 33555554555
Q ss_pred eEEEEeCEEEEeeCCCCCccc
Q 018550 150 VEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~ 170 (354)
..+++|-.+|-|||...+|..
T Consensus 313 ~~~iPYG~lVWatG~~~rp~~ 333 (491)
T KOG2495|consen 313 IEEIPYGLLVWATGNGPRPVI 333 (491)
T ss_pred eeeecceEEEecCCCCCchhh
Confidence 689999999999996555543
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-06 Score=76.22 Aligned_cols=82 Identities=21% Similarity=0.239 Sum_probs=66.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------------------------------------------
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---------------------------------------------- 231 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---------------------------------------------- 231 (354)
..|+|||+|++|+-+|..+++.|.+|.++.+.+.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 4699999999999999999999999999998773
Q ss_pred -------------------------------ccccccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcc
Q 018550 232 -------------------------------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCT 276 (354)
Q Consensus 232 -------------------------------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~ 276 (354)
+-+++++++.+ ++++++.|..++.++. +.+.+|+++.||.+|+||
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAt 163 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILAT 163 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEec
Confidence 11223333444 8999999999997752 777778899999999999
Q ss_pred cCC
Q 018550 277 GLT 279 (354)
Q Consensus 277 G~~ 279 (354)
|-.
T Consensus 164 GG~ 166 (408)
T COG2081 164 GGK 166 (408)
T ss_pred CCc
Confidence 944
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-06 Score=81.62 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=38.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.+|+|||||.+|++||+.|.+.|++|+|+|+++.+||.+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 47999999999999999999999999999999999988764
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-05 Score=69.86 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=68.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.+.+|+++++.+.+ ..
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~----~~-------------------------------------- 178 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF----RA-------------------------------------- 178 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc----Cc--------------------------------------
Confidence 368999999999999999999999999999986422 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vI 159 (354)
...+.+.+.+. +++ +.+++.+.++..++ ....+...+. .+..+++++|.+|
T Consensus 179 ------------------------~~~~~~~l~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 179 ------------------------EKILLDRLRKNPNIE--FLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred ------------------------CHHHHHHHHhCCCeE--EEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEE
Confidence 01223334444 777 88899999998643 3233444331 1223689999999
Q ss_pred EeeCCCCCccc
Q 018550 160 VCNGHFSVPRL 170 (354)
Q Consensus 160 lAtG~~s~~~~ 170 (354)
+|+| ..|..
T Consensus 232 ~a~G--~~~~~ 240 (300)
T TIGR01292 232 IAIG--HEPNT 240 (300)
T ss_pred EeeC--CCCCh
Confidence 9999 55544
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-06 Score=81.88 Aligned_cols=42 Identities=31% Similarity=0.489 Sum_probs=38.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc----CCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~----g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|+.|.++ |++|+|+|+++.+||.+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 57899999999999999999998 9999999999999977553
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-06 Score=80.90 Aligned_cols=39 Identities=38% Similarity=0.723 Sum_probs=36.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
+|+|||||++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 699999999999999999999999999999999998653
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.2e-05 Score=70.05 Aligned_cols=93 Identities=22% Similarity=0.293 Sum_probs=67.9
Q ss_pred CeEEEEcCChHHHHHHHHHHH----cC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLR----EG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~----~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
++|+|||+|++|+.+|..|++ .| .+|+++ ..+.+.. .
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~---~--------------------------------- 188 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLP---G--------------------------------- 188 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccc---c---------------------------------
Confidence 589999999999999999975 34 478888 3322100 0
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
+ ...+...+.+.+++.+++ +..++++.+++. + .+.+.++. ++.+|
T Consensus 189 ----------------------~--~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~---~--~v~~~~g~----~i~~D 233 (364)
T TIGR03169 189 ----------------------F--PAKVRRLVLRLLARRGIE--VHEGAPVTRGPD---G--ALILADGR----TLPAD 233 (364)
T ss_pred ----------------------C--CHHHHHHHHHHHHHCCCE--EEeCCeeEEEcC---C--eEEeCCCC----EEecC
Confidence 0 045667778888888999 999999988852 3 45555554 89999
Q ss_pred EEEEeeCCCCCcc
Q 018550 157 AVVVCNGHFSVPR 169 (354)
Q Consensus 157 ~vIlAtG~~s~~~ 169 (354)
.||+|+| ..|.
T Consensus 234 ~vi~a~G--~~p~ 244 (364)
T TIGR03169 234 AILWATG--ARAP 244 (364)
T ss_pred EEEEccC--CChh
Confidence 9999999 5554
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-06 Score=77.61 Aligned_cols=42 Identities=29% Similarity=0.498 Sum_probs=38.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
++||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 368999999999999999999999999999999899987654
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1e-05 Score=69.48 Aligned_cols=41 Identities=37% Similarity=0.579 Sum_probs=35.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||+|++|++||..|+++ .+|+|||.+..+||.-+.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~T 48 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANT 48 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccce
Confidence 46899999999999999999874 689999999999977554
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-06 Score=81.30 Aligned_cols=42 Identities=38% Similarity=0.586 Sum_probs=38.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||||++|+++|+.|.+. |++|+|+|+++.+||.+..
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 46899999999999999999999 9999999999999987653
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.1e-06 Score=78.03 Aligned_cols=41 Identities=34% Similarity=0.587 Sum_probs=38.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeec
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~ 43 (354)
++|+|||||++|+++|+.|.+++ .+++|||+++.+||....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 57999999999999999999999 999999999999988664
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2e-06 Score=80.47 Aligned_cols=42 Identities=31% Similarity=0.431 Sum_probs=37.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc------CCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~------g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|+.|.+. |.+|+|+|+++.+||.+..
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 46799999999999999999986 3799999999999987553
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.1e-06 Score=80.94 Aligned_cols=40 Identities=40% Similarity=0.509 Sum_probs=36.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~ 41 (354)
.+||+|||||++|+++|..|++.|++|+|+|+++.+||.+
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 3689999999999999999999999999999999898653
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.5e-06 Score=72.91 Aligned_cols=134 Identities=17% Similarity=0.129 Sum_probs=82.2
Q ss_pred CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCc------ccccccccchhcccccccccc-CCCCCccCCCCCCCCC
Q 018550 25 GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP------VHSSLYKSLRVNLPRELMGFQ-AYPFVARNYEGSVDLR 97 (354)
Q Consensus 25 g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 97 (354)
|.+|+|+|+++.+|......++-..+-....+...+ ...+.+..+..+.+.+...|. +...... .+...+
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~---~e~~gr 77 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETF---VGSSGR 77 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceE---ECCCCE
Confidence 568999999999987666655444211111110000 012234444444444444432 2222111 123455
Q ss_pred CCC---CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcc
Q 018550 98 RYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 98 ~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
.|| ...++.+.+...+++.+++ ++++++|.+| ++ +.|.+.+..+. ..+.+|.||+|||..+.|.
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~--i~~~~~V~~i--~~-~~~~v~~~~~~---~~~~a~~vIlAtGG~s~p~ 144 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQ--FHTRHRWIGW--QG-GTLRFETPDGQ---STIEADAVVLALGGASWSQ 144 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEE--eC-CcEEEEECCCc---eEEecCEEEEcCCCccccc
Confidence 676 4578999999999999999 9999999999 33 55888775432 3689999999999755443
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00016 Score=67.32 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|||+|..|+.+|..|.+.|.+|+++++.+
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999864
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-06 Score=76.37 Aligned_cols=37 Identities=38% Similarity=0.524 Sum_probs=34.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~ 37 (354)
|+++|+|||||++|+.+|..|+++|++|+|+|+.+..
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 6789999999999999999999999999999986644
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.3e-05 Score=68.16 Aligned_cols=59 Identities=24% Similarity=0.382 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
..+...+++.+..+|++ ++++++|.++...++....+.+.+|. ++.+|+||+|.|+.++
T Consensus 173 ~~vvkni~~~l~~~G~e--i~f~t~VeDi~~~~~~~~~v~~~~g~----~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 173 PKVVKNIREYLESLGGE--IRFNTEVEDIEIEDNEVLGVKLTKGE----EIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHHhcCcE--EEeeeEEEEEEecCCceEEEEccCCc----EEecCEEEEccCcchH
Confidence 57788889999999988 99999999999876345667777765 8999999999998554
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.7e-05 Score=69.25 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCc-EEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~-v~lie~~~ 35 (354)
++|+|||+|+.|+.+|..|.+.|.+ |+++++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 6899999999999999999999997 99999753
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3e-05 Score=73.51 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=70.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||..|+.+|..|+..+.+|+++++.+.+. .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~----~--------------------------------------- 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK----A--------------------------------------- 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc----c---------------------------------------
Confidence 689999999999999999999999999999865320 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcE-EEEEeecC-CceEEEEeCEEE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW-KVKSRKKD-DVVEEETFDAVV 159 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g~-~~~~~~~~d~vI 159 (354)
. ..+.+.+.. .+++ +++++.++++..++ +.. .+...+.. +...++.+|.++
T Consensus 389 --------------------~---~~l~~~l~~~~gI~--i~~~~~v~~i~~~~-g~v~~v~~~~~~~g~~~~i~~D~v~ 442 (517)
T PRK15317 389 --------------------D---QVLQDKLRSLPNVT--IITNAQTTEVTGDG-DKVTGLTYKDRTTGEEHHLELEGVF 442 (517)
T ss_pred --------------------c---HHHHHHHhcCCCcE--EEECcEEEEEEcCC-CcEEEEEEEECCCCcEEEEEcCEEE
Confidence 1 223333333 4777 99999999998654 332 34554422 234579999999
Q ss_pred EeeCCCCCcccC
Q 018550 160 VCNGHFSVPRLA 171 (354)
Q Consensus 160 lAtG~~s~~~~p 171 (354)
+|+| ..|+..
T Consensus 443 ~~~G--~~p~~~ 452 (517)
T PRK15317 443 VQIG--LVPNTE 452 (517)
T ss_pred EeEC--CccCch
Confidence 9999 566543
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.9e-06 Score=80.28 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH 164 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~ 164 (354)
..+.+.+.+.+++.|.+ ++++++|.+|..+++..+.|.+.++. ++.+|.||+|++.
T Consensus 219 ~~l~~al~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~V~~~~g~----~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGE--LRLNAEVIRIETEGGRATAVHLADGE----RLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCE--EEECCeEEEEEeeCCEEEEEEECCCC----EEECCEEEECCcH
Confidence 45566667777777888 99999999998765234667776664 7899999999884
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-06 Score=70.80 Aligned_cols=42 Identities=26% Similarity=0.458 Sum_probs=39.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
++|++|||||.+|+.+|..|+++|.+|.|+||++++||.|-.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 478999999999999999999999999999999999998865
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.4e-06 Score=78.96 Aligned_cols=42 Identities=31% Similarity=0.547 Sum_probs=37.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-----CcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-----HTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-----~~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||||++|+++|..|++.| ++|+|+|+++.+||.+..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 367999999999999999999987 899999999999987643
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.9e-06 Score=78.35 Aligned_cols=39 Identities=41% Similarity=0.607 Sum_probs=36.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
+|+|||||++|+++|+.|.++|++|+|+|+.+.+||.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVA 39 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcc
Confidence 589999999999999999999999999999999998653
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.4e-06 Score=78.18 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
..+.+.+.+.+++.|.+ ++++++|.+|..+++..+.+.+.+++ ++.+|.||+|+|.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~--i~~~~~V~~I~~~~~~~~gv~~~~g~----~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQ--IRYRARVTKIILENGKAVGVKLADGE----KIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCE--EEeCCeeeEEEecCCcEEEEEeCCCC----EEEcCEEEECCChHH
Confidence 45667778888888988 99999999998765355667776664 789999999999643
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.1e-06 Score=73.35 Aligned_cols=40 Identities=35% Similarity=0.691 Sum_probs=35.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceee
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWI 42 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~ 42 (354)
.+|+|||||.||++||..|.++|+ +++|+|..+.+||...
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 579999999999999999998775 8999999999987643
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.9e-07 Score=72.68 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=61.7
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----------------------c-----cccccCCCCC-CeEEecc
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----------------------D-----ETHEKQPGYD-NMWLHSM 249 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-----------------------~-----~~~~~l~~~~-~~~~~~~ 249 (354)
+|+|||||+.|+.+|..|++.+.+++++.+.+. . ...+++...+ ++++++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999977652 0 1122222333 6777888
Q ss_pred eeEEecCCc-E-----E-----EccCcEEecCEEEEcccCCCccCc
Q 018550 250 VERANEDGT-V-----V-----FRNGRVVSADVIMHCTGLTGTSTT 284 (354)
Q Consensus 250 v~~v~~~~~-v-----~-----~~~g~~~~~D~vi~a~G~~~~~p~ 284 (354)
+.++..... + . ..++.++.+|.+|+|||..+..|+
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 126 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN 126 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence 888874433 1 1 123478999999999998854443
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.8e-06 Score=69.34 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=50.4
Q ss_pred EEEccCCCHHHHHHHHhccCCE-EEEEEecCC----------------cccc------ccC-------------------
Q 018550 201 ILIGHYASGLDIKRDLAGFAKE-VHIASRSVA----------------DETH------EKQ------------------- 238 (354)
Q Consensus 201 ~ViG~G~~g~e~a~~l~~~g~~-v~~~~r~~~----------------~~~~------~~l------------------- 238 (354)
+|||+|++|+-+|..|.+.|.+ ++++.+.+. .... ..+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999988 999999853 0000 000
Q ss_pred ------------CCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccC
Q 018550 239 ------------PGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGL 278 (354)
Q Consensus 239 ------------~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~ 278 (354)
++.+ ++..++.|+++..++. |++++++++.||.||+|||.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 0112 4778899999985543 77888878999999999996
|
... |
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.7e-06 Score=79.70 Aligned_cols=42 Identities=38% Similarity=0.514 Sum_probs=38.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||||++|+++|..|+++|++|+|+|+.+.+||.+..
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence 478999999999999999999999999999999888877653
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00012 Score=68.44 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||+|..|+.+|..|.+.|. +|+++++.+
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 689999999999999999999998 899999853
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00012 Score=68.35 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|||+|..|+-+|..|.+.|.+|+++++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 689999999999999999999999999999753
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.9e-05 Score=69.38 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=30.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||||.||+.+|.+.++.|.+.+|+-.+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 479999999999999999999999999999864
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.7e-05 Score=68.19 Aligned_cols=156 Identities=18% Similarity=0.158 Sum_probs=85.3
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC-CCCC--CCCCCCCCCC----------Ccccccccccch
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT-SETE--SDPLGVDPNR----------YPVHSSLYKSLR 70 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~--~~~~~~~~~~----------~~~~~~~~~~~~ 70 (354)
+|+|||+|.||+++|..|.+. ++|+|+.|.+.-.+.-.++ +++. ..+ ..+|+. .+.+......+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~-~Ds~~~Hv~DTL~AG~glcD~~aV~~iv 86 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSE-DDSPELHVADTLAAGAGLCDEEAVEFIV 86 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCC-CCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 799999999999999999998 9999999975432211111 2211 000 111111 111111222222
Q ss_pred hcccccccccc--CCCCCccCCC------CCCCC-------CCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEe
Q 018550 71 VNLPRELMGFQ--AYPFVARNYE------GSVDL-------RRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 71 ~~~~~~~~~~~--~~~~~~~~~~------~~~~~-------~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~ 134 (354)
.+.+.....+. +.++...... +..+. .. .+...++..+.+.+.+ .+++ +..+..+.++..+
T Consensus 87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-~TG~~I~~~L~~~v~~~p~I~--v~e~~~a~~li~~ 163 (518)
T COG0029 87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-ATGKEIMTALLKKVRNRPNIT--VLEGAEALDLIIE 163 (518)
T ss_pred HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-CccHHHHHHHHHHHhcCCCcE--EEecchhhhhhhc
Confidence 22222111111 2222221100 00000 01 2447888888888776 5777 8888888888877
Q ss_pred CCCcE-EEEEeecCCceEEEEeCEEEEeeCC
Q 018550 135 ESNKW-KVKSRKKDDVVEEETFDAVVVCNGH 164 (354)
Q Consensus 135 ~~~~~-~v~~~~g~~~~~~~~~d~vIlAtG~ 164 (354)
++... .+.+.+..++...+.++.||+|||.
T Consensus 164 ~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 164 DGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred CCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 63233 4454433223468899999999995
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.9e-06 Score=76.32 Aligned_cols=81 Identities=25% Similarity=0.263 Sum_probs=51.2
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----------------------------------------------
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------------------------------------------- 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------------------------------------------- 231 (354)
+|+|||||++|+-+|..+++.|.+|.++++.+.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 489999999999999999999999999999874
Q ss_pred -------------------------------ccccccCCCCC-CeEEecceeEEecC-Cc---EEEccCcEEecCEEEEc
Q 018550 232 -------------------------------DETHEKQPGYD-NMWLHSMVERANED-GT---VVFRNGRVVSADVIMHC 275 (354)
Q Consensus 232 -------------------------------~~~~~~l~~~~-~~~~~~~v~~v~~~-~~---v~~~~g~~~~~D~vi~a 275 (354)
+.++.++++.+ +++.++.|..+..+ +. |.++++.++.+|.||+|
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILA 161 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILA 161 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE-
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEe
Confidence 00111111223 68899999999743 32 66657789999999999
Q ss_pred ccCC
Q 018550 276 TGLT 279 (354)
Q Consensus 276 ~G~~ 279 (354)
+|-.
T Consensus 162 tGG~ 165 (409)
T PF03486_consen 162 TGGK 165 (409)
T ss_dssp ---S
T ss_pred cCCC
Confidence 9976
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.1e-05 Score=75.60 Aligned_cols=42 Identities=24% Similarity=0.493 Sum_probs=37.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||||++|+++|+.|+++|. +|+|+|+++.+||.+..
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence 4689999999999999999999998 69999999998886543
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.2e-05 Score=75.29 Aligned_cols=40 Identities=43% Similarity=0.652 Sum_probs=36.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+|+|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 5899999999999999999999999999999999876543
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=70.36 Aligned_cols=33 Identities=30% Similarity=0.222 Sum_probs=31.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 689999999999999999999999999999865
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3e-05 Score=72.06 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
.+...+.+.+...+++.|.. +..++.|++|.-..++.+.|.+..| .+++.++|.|+|.|++
T Consensus 184 ~DP~~lC~ala~~A~~~GA~--viE~cpV~~i~~~~~~~~gVeT~~G-----~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGAL--VIENCPVTGLHVETDKFGGVETPHG-----SIETECVVNAAGVWAR 244 (856)
T ss_pred cCHHHHHHHHHHHHHhcCcE--EEecCCcceEEeecCCccceeccCc-----ceecceEEechhHHHH
Confidence 34477888889999999999 9999999999876657788888887 6899999999998774
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.6e-05 Score=75.41 Aligned_cols=41 Identities=44% Similarity=0.631 Sum_probs=37.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
+++|+|||+|++|+++|..|.+.|++|+|+|+.+.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 35899999999999999999999999999999999987553
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.1e-05 Score=80.89 Aligned_cols=79 Identities=19% Similarity=0.047 Sum_probs=56.7
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-------------------ccccccCCCCC-CeEEecceeEEec
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-------------------DETHEKQPGYD-NMWLHSMVERANE 255 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-------------------~~~~~~l~~~~-~~~~~~~v~~v~~ 255 (354)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+. +...+.+++.+ +++.++.+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 579999999999999999999999999999998763 11122233333 444444321
Q ss_pred CCcEEEccCcEEecCEEEEcccCC
Q 018550 256 DGTVVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 256 ~~~v~~~~g~~~~~D~vi~a~G~~ 279 (354)
..+++++.....+|.||+|||..
T Consensus 381 -~dit~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 381 -KTATLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred -cEEeHHHhccccCCEEEEeCCCC
Confidence 12555555556799999999984
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.5e-05 Score=77.89 Aligned_cols=42 Identities=43% Similarity=0.562 Sum_probs=38.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|+.|.+.|++|+|+|+++.+||.+..
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 468999999999999999999999999999999989877543
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00022 Score=61.29 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=30.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc----CCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~----g~~v~lie~~~~ 36 (354)
..+|+|||||-.|.+.|.-|.++ |++|+++|+++.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 35899999999999999999764 789999999764
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.9e-05 Score=70.60 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=62.5
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------------------------------------c---c
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------------------------------------D---E 233 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------------------------------------~---~ 233 (354)
..+|+|||+|++|+-+|..|++.|.+|+++++++. + .
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 46799999999999999999999999999998652 0 0
Q ss_pred cccc-------------------------C----CCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCC
Q 018550 234 THEK-------------------------Q----PGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 234 ~~~~-------------------------l----~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
.... + .+.+ +++.++.+++++.++. +.+.+|+++.+|.||.|+|..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 0000 0 0112 5777788888874432 6667888999999999999873
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.87 E-value=2e-05 Score=70.36 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=55.4
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC-C----------------------------------------------
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV-A---------------------------------------------- 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~-~---------------------------------------------- 231 (354)
.|+|||||..|+|+|..+++.|.+|.++.... .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 48999999999999999999999999995333 1
Q ss_pred ------------------ccccccCCCCCCe-EEecceeEEe-cCCc---EEEccCcEEecCEEEEcccC
Q 018550 232 ------------------DETHEKQPGYDNM-WLHSMVERAN-EDGT---VVFRNGRVVSADVIMHCTGL 278 (354)
Q Consensus 232 ------------------~~~~~~l~~~~~~-~~~~~v~~v~-~~~~---v~~~~g~~~~~D~vi~a~G~ 278 (354)
....+.++...++ +....|+++. ++++ |.+.+|.++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0011122233322 4567888886 3443 88899999999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00022 Score=66.84 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=28.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
++|+|||+|..|+.+|..+.+.|. +|++++..
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 689999999999999999999986 78877654
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.85 E-value=7e-05 Score=63.65 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=67.6
Q ss_pred CCeEEEEccCCCHHHHHHHHhcc-C-CEEEEEEecCC-----------------c---cccccCCCCCCeEEecceeEEe
Q 018550 197 DQVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSVA-----------------D---ETHEKQPGYDNMWLHSMVERAN 254 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~-g-~~v~~~~r~~~-----------------~---~~~~~l~~~~~~~~~~~v~~v~ 254 (354)
.-.++|||||.-|+-+|..+.+. + .+|-++..++. + ..+..+.-.+..+.+..|+++.
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~ 118 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFN 118 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcC
Confidence 35699999999999999998765 3 35777776653 1 1122223344567778888888
Q ss_pred cCCc-EEEccCcEEecCEEEEcccCCCccCcccccCchhh
Q 018550 255 EDGT-VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMAL 293 (354)
Q Consensus 255 ~~~~-v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~ 293 (354)
.+.. |++++|++|.+|++|+|+|.. -+-+.+++..+
T Consensus 119 P~~N~v~t~gg~eIsYdylviA~Giq---l~y~~IkGl~E 155 (446)
T KOG3851|consen 119 PDKNTVVTRGGEEISYDYLVIAMGIQ---LDYGKIKGLVE 155 (446)
T ss_pred CCcCeEEccCCcEEeeeeEeeeeece---eccchhcChHh
Confidence 6654 999999999999999999998 44344544443
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0002 Score=60.09 Aligned_cols=37 Identities=19% Similarity=0.436 Sum_probs=32.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC------CcEEEEeeCCCcc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQVG 38 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g------~~v~lie~~~~~g 38 (354)
+++|+|+|||+.|++.|+.|++++ ..+++||+..-.|
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 478999999999999999999997 7899999865444
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.3e-05 Score=73.87 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=37.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
.++|+|||+|++|+++|..|+++|++++++|+++.+||...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 46899999999999999999999999999999888887643
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.8e-05 Score=71.54 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
.+||+|||+|.+|+.+|..|++.|.+|.++|+++..||.+.
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 47999999999999999999999999999999999998876
|
|
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.3e-05 Score=69.41 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=35.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccce
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~ 40 (354)
.+||+|||||..|..+|..++.+|.++.|+|+++...|+
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 379999999999999999999999999999998765444
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=68.82 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999753
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0013 Score=65.36 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=30.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCc-EEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~-v~lie~~~ 35 (354)
++|+|||||..|+-+|..+.+.|.+ |+++++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 6899999999999999999999997 99999853
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.7e-05 Score=68.58 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=59.1
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---cc-----------------------------------------
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---DE----------------------------------------- 233 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---~~----------------------------------------- 233 (354)
-.|+|||+|++|+-+|..|++.|.+|.++.+.+. +.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 4699999999999999999999999999988652 00
Q ss_pred -----------ccccCCCCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCC
Q 018550 234 -----------THEKQPGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 234 -----------~~~~l~~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
+.+++.+.+.-+....|++++.++. |++++|.++.+|+||.|+|...
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 0000011221123467777764332 7778888999999999999983
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00013 Score=66.40 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=61.0
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC------------------------c----------------c---cc
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------------------------D----------------E---TH 235 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~------------------------~----------------~---~~ 235 (354)
+|+|||||++|+-+|..|++.|.+|+++++.+. + . ..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 699999999999999999999999999998763 0 0 00
Q ss_pred ccC-----------------------CCCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCC
Q 018550 236 EKQ-----------------------PGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 236 ~~l-----------------------~~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~ 279 (354)
..+ .....++.++.+++++.++. |++++|+++.+|+||-|-|..
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~ 151 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIH 151 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcc
Confidence 000 01124777888888874432 667788889999999999966
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.5e-05 Score=71.37 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=28.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.|+|+|||+|++|+-.+..|.+.|-+++++++++.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 37899999999999999999999999999999885
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.5e-05 Score=74.15 Aligned_cols=42 Identities=33% Similarity=0.527 Sum_probs=38.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||||++|+.+|..|.+.|++|+|+|+++.+||.+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 368999999999999999999999999999999999987654
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=66.68 Aligned_cols=83 Identities=22% Similarity=0.256 Sum_probs=62.4
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--c-------------cccccC------------------C----
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--D-------------ETHEKQ------------------P---- 239 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--~-------------~~~~~l------------------~---- 239 (354)
..+|+|||||++|+.+|..|++.|.+|+++++.+. . +.++++ .
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 47899999999999999999999999999998762 0 000000 0
Q ss_pred -------------------------CCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCC
Q 018550 240 -------------------------GYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 240 -------------------------~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~ 279 (354)
....++.++.++.++.++. +++++|+++.+|+||.|-|..
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~ 153 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGR 153 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 0013677778888874432 667888999999999999976
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.7e-05 Score=75.93 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=53.3
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc-------------------cccccCCCCC-CeEEecceeEEe
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------------------ETHEKQPGYD-NMWLHSMVERAN 254 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-------------------~~~~~l~~~~-~~~~~~~v~~v~ 254 (354)
..+++|+|||+|++|+.+|..|++.|.+|+++.+.+.. ...+.+.+.+ +++.++.+ .
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-d-- 613 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-D-- 613 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-E--
Confidence 35789999999999999999999999999999986530 0001111222 44444333 1
Q ss_pred cCCcEEEccCcEEecCEEEEcccCC
Q 018550 255 EDGTVVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 255 ~~~~v~~~~g~~~~~D~vi~a~G~~ 279 (354)
+.+++.....+|.||+|||..
T Consensus 614 ----i~le~L~~~gYDaVILATGA~ 634 (1019)
T PRK09853 614 ----LTVEQLKNEGYDYVVVAIGAD 634 (1019)
T ss_pred ----EEhhhheeccCCEEEECcCCC
Confidence 233333455699999999997
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.3e-05 Score=66.48 Aligned_cols=42 Identities=36% Similarity=0.476 Sum_probs=37.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~~~gg~~~~ 43 (354)
.++|+|+|||.+|+++|+.|++++. .++|+|+.+.+||..+-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 5789999999999999999999976 56779999999987665
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00052 Score=70.05 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=67.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++|+|||+|+.|+.+|..|++.|. .|+|+|..+.+
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------------------------------------------- 353 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------------------------------------------- 353 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------------------------------
Confidence 689999999999999999999996 58899875321
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
...+.+.+++.+++ ++.++.+.++..++ ..-.++.....+...++.+|.|+++
T Consensus 354 ------------------------~~~l~~~L~~~GV~--i~~~~~v~~i~g~~-~v~~V~l~~~~g~~~~i~~D~V~va 406 (985)
T TIGR01372 354 ------------------------SPEARAEARELGIE--VLTGHVVAATEGGK-RVSGVAVARNGGAGQRLEADALAVS 406 (985)
T ss_pred ------------------------hHHHHHHHHHcCCE--EEcCCeEEEEecCC-cEEEEEEEecCCceEEEECCEEEEc
Confidence 11234455677888 89999999987543 2223444321122357999999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
.| ..|+.
T Consensus 407 ~G--~~Pnt 413 (985)
T TIGR01372 407 GG--WTPVV 413 (985)
T ss_pred CC--cCchh
Confidence 99 56654
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00015 Score=65.84 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 479999999999999999999999999999876
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00095 Score=60.92 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=36.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC----CcEEEEeeCCCccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g----~~v~lie~~~~~gg~~~~~ 44 (354)
.++.=|||+|.|++++|..|-+.+ -+|+++|+.+..||.+.-.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~ 48 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGA 48 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCC
Confidence 456779999999999999998864 5999999998888776543
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00013 Score=66.80 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=60.7
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------------------------------------c---cc-
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------------------------------------D---ET- 234 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------------------------------------~---~~- 234 (354)
+|+|||||++|+-+|..|++.|.+|+++++.+. + ..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 699999999999999999999999999997653 0 00
Q ss_pred -----------c-----------------ccCCCCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCC
Q 018550 235 -----------H-----------------EKQPGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 235 -----------~-----------------~~l~~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
. +.+....+++.++.+++++.++. |++++|+++.+|+||-|-|...
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 0 00011125667777888774432 6667888899999999999873
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00087 Score=62.71 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||+|..|+.+|..+.+.|. +|+++++.+
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 689999999999999999999996 799999864
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0023 Score=62.47 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
.++|+|||+|..|+.+|..|.+.|. +|+++.+.+
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3689999999999999999999997 699998753
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00028 Score=60.87 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=77.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|+|||+.++..|--++..|.++.|+=|.+.+ .+
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv----LR-------------------------------------- 226 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV----LR-------------------------------------- 226 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh----hc--------------------------------------
Confidence 589999999999999999999999999999886543 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.|+ +.+.+.+.+..+..|++ ++.++.++.+.+..++...+.+..+. ....|.|+-|
T Consensus 227 ~FD------------------~~i~~~v~~~~~~~gin--vh~~s~~~~v~K~~~g~~~~i~~~~~----i~~vd~llwA 282 (478)
T KOG0405|consen 227 GFD------------------EMISDLVTEHLEGRGIN--VHKNSSVTKVIKTDDGLELVITSHGT----IEDVDTLLWA 282 (478)
T ss_pred chh------------------HHHHHHHHHHhhhccee--ecccccceeeeecCCCceEEEEeccc----cccccEEEEE
Confidence 010 55666677777777888 89999999999877565666665553 4469999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|..
T Consensus 283 iG--R~Pnt 289 (478)
T KOG0405|consen 283 IG--RKPNT 289 (478)
T ss_pred ec--CCCCc
Confidence 99 45544
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00031 Score=59.73 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC--cEEEEEeecCCceEEEEeCEEEEeeCCC
Q 018550 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN--KWKVKSRKKDDVVEEETFDAVVVCNGHF 165 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~--~~~v~~~~g~~~~~~~~~d~vIlAtG~~ 165 (354)
.++..+...+-+-.+..+-+ +..+-+++.+..+++. .+-+.+.++.+ ++.+.+++|-|+|.+
T Consensus 193 vD~~~v~ls~~edF~~~gg~--i~~n~~l~g~~~n~~~~~~Ypivv~ngk~--ee~r~~~~vtc~gl~ 256 (453)
T KOG2665|consen 193 VDWGSVTLSFGEDFDFMGGR--IYTNFRLQGIAQNKEATFSYPIVVLNGKG--EEKRTKNVVTCAGLQ 256 (453)
T ss_pred eehHHHHHHHHHHHHHhccc--ccccceeccchhccCCCCCCceEEecCcc--ceeEEeEEEEecccc
Confidence 34455555555556666777 7888999999887642 45566666553 488999999999973
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.4e-05 Score=76.15 Aligned_cols=43 Identities=35% Similarity=0.604 Sum_probs=39.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~ 44 (354)
.++|+|||||++|+++|..|.+.|++|+|+|+++.+||.+...
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 4789999999999999999999999999999999999887653
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00015 Score=66.39 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=31.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+.+|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4679999999999999999999999999999876
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00021 Score=66.15 Aligned_cols=91 Identities=22% Similarity=0.221 Sum_probs=61.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCE-EEEEEecCC---------------------------cc---------------c
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKE-VHIASRSVA---------------------------DE---------------T 234 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~-v~~~~r~~~---------------------------~~---------------~ 234 (354)
..|+|||+|.+|+-+|..|.+.|.. +.++++.+. .. .
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence 5699999999999999999999987 999998763 00 0
Q ss_pred cccCCCCC---CeEEecceeEEe--cCCc---EEEccCcE--EecCEEEEcccCCCccCcccccC
Q 018550 235 HEKQPGYD---NMWLHSMVERAN--EDGT---VVFRNGRV--VSADVIMHCTGLTGTSTTTLFLK 289 (354)
Q Consensus 235 ~~~l~~~~---~~~~~~~v~~v~--~~~~---v~~~~g~~--~~~D~vi~a~G~~~~~p~~~~l~ 289 (354)
...+++.+ .+.+++.|+.+. +++. |+++++.+ +.+|.||+|||.- ..|+..-+.
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~-~~P~iP~~~ 152 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHL-SEPYIPDFA 152 (443)
T ss_pred HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCC-CCCCCCCCC
Confidence 00011122 455666666665 3332 77777754 5599999999994 445554443
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.58 E-value=6.1e-05 Score=66.10 Aligned_cols=35 Identities=34% Similarity=0.572 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQV 37 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~ 37 (354)
+|++|||+|++|+.+|..|++.+ .+|+|+|+++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 68999999999999999999997 699999997543
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00029 Score=62.12 Aligned_cols=59 Identities=29% Similarity=0.273 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCccc
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
+-+.++..+.+.+-|+. ++-|..|.++.... +...+.+.+|. ++..|.||.|+| -.|+.
T Consensus 393 eyls~wt~ekir~~GV~--V~pna~v~sv~~~~-~nl~lkL~dG~----~l~tD~vVvavG--~ePN~ 451 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVD--VRPNAKVESVRKCC-KNLVLKLSDGS----ELRTDLVVVAVG--EEPNS 451 (659)
T ss_pred HHHHHHHHHHHHhcCce--eccchhhhhhhhhc-cceEEEecCCC----eeeeeeEEEEec--CCCch
Confidence 45667777777888998 99999999998876 77888899986 899999999999 56654
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0001 Score=67.03 Aligned_cols=32 Identities=22% Similarity=0.120 Sum_probs=29.8
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|+|||||.+|+++|..|++.|.+|+++.+++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 58999999999999999999999999998654
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00024 Score=64.30 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=59.9
Q ss_pred EEEEccCCCHHHHHHHHhcc--CCEEEEEEecCC----------ccc--------cccC---------------------
Q 018550 200 VILIGHYASGLDIKRDLAGF--AKEVHIASRSVA----------DET--------HEKQ--------------------- 238 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~~----------~~~--------~~~l--------------------- 238 (354)
|+|||+|+.|+.+|..|++. |.+|.++.+.+. +.. ...+
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~ 81 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKT 81 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCC
Confidence 79999999999999999986 899999998762 000 0000
Q ss_pred ---------------CCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCC
Q 018550 239 ---------------PGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 239 ---------------~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
.+.+ .++.+..|.++..++ |++++|+++.+|.||.|.|..+
T Consensus 82 ~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~-v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 82 AYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADG-VDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCE-EEECCCCEEEeeEEEECCCCCC
Confidence 0001 266677888886555 8888899999999999999773
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00025 Score=64.34 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=62.1
Q ss_pred EEEEccCCCHHHHHHHH--hccCCEEEEEEecCC----------------------------------------------
Q 018550 200 VILIGHYASGLDIKRDL--AGFAKEVHIASRSVA---------------------------------------------- 231 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l--~~~g~~v~~~~r~~~---------------------------------------------- 231 (354)
|+|||+|++|.-+|..| ++.|.+|.++.+.+.
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 79999999999999999 778999999987542
Q ss_pred ---------ccccccCCCCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCC
Q 018550 232 ---------DETHEKQPGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 232 ---------~~~~~~l~~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~ 279 (354)
+...+++...+..+.++.|..+..++. |++++|+++.++.||-|.|..
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 011112232346778889999986553 677889999999999999976
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.002 Score=63.04 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||+|..|+-+|..+.++|. +|+++.+++
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 689999999999999999999997 699998754
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00011 Score=69.17 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=34.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccce
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~ 40 (354)
+||+|||+||+|+.+|..|++.|++|.+||++...|+.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence 58999999999999999999999999999998777643
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00019 Score=65.72 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=30.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 469999999999999999999999999999854
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00047 Score=63.29 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=64.2
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----------c----cccccC-----------------------
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----------D----ETHEKQ----------------------- 238 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-----------~----~~~~~l----------------------- 238 (354)
.++++|||+|++|+-.|..|.+.|.++++++|++. + ..++.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 58899999999999999999999999999999884 0 001111
Q ss_pred ---------------CC---CCCeEEecceeEEecC--Cc--EEEccC----cEEecCEEEEcccCC--CccCcccc
Q 018550 239 ---------------PG---YDNMWLHSMVERANED--GT--VVFRNG----RVVSADVIMHCTGLT--GTSTTTLF 287 (354)
Q Consensus 239 ---------------~~---~~~~~~~~~v~~v~~~--~~--v~~~~g----~~~~~D~vi~a~G~~--~~~p~~~~ 287 (354)
+. ...+.+++.+..+... +. |.+.++ .+.-+|.|++|||-- |..|..+.
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 01 1136778877777743 33 666554 245599999999987 44454443
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00023 Score=66.87 Aligned_cols=83 Identities=24% Similarity=0.315 Sum_probs=61.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-------------------------ccc------------------
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-------------------------DET------------------ 234 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-------------------------~~~------------------ 234 (354)
..|+|||+|++|+-+|..|++.|.+|+++.+.+. ++.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 4699999999999999999999999999998652 000
Q ss_pred c-----------------------ccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCC
Q 018550 235 H-----------------------EKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 235 ~-----------------------~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
. +.+.+.+ +++.++.++.++.++. +++.+|.++.+|+||.|.|...
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 0 0001112 5677888888875432 5556777899999999999983
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0001 Score=74.91 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=32.5
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 46789999999999999999999999999999865
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00012 Score=68.13 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=32.8
Q ss_pred CCCeEEEEccCCCHHHHHHHHhc--cCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAG--FAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~--~g~~v~~~~r~~~ 231 (354)
.+++|+|||+|+.|+.+|..|++ .|.+|+++.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 46889999999999999999986 6899999999885
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00013 Score=68.59 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=53.1
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc---cccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCE
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---ETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADV 271 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~---~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~ 271 (354)
.+++++|||+|.+|+++|..|++.|.+|+++.+++.+ ...+.+++.+ .++.+..+. ....+|+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-------------~~~~~D~ 81 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-------------LPEDTDL 81 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-------------ccCCCCE
Confidence 4688999999999999999999999999999876531 1112233333 333332221 1245999
Q ss_pred EEEcccCCCccCccccc
Q 018550 272 IMHCTGLTGTSTTTLFL 288 (354)
Q Consensus 272 vi~a~G~~~~~p~~~~l 288 (354)
||.++|.. |+.+++
T Consensus 82 Vv~s~Gi~---~~~~~~ 95 (480)
T PRK01438 82 VVTSPGWR---PDAPLL 95 (480)
T ss_pred EEECCCcC---CCCHHH
Confidence 99999999 555543
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0026 Score=55.61 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=70.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||-+++..|..|.+.+.+|+++=|++.+-.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------ 180 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------ 180 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------------------------------------------
Confidence 46899999999999999999999999999988754310
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
.+.+.+.+.+. ++. +.+++.+.++.-++ .-.+..++..+++..+.+|.+.+
T Consensus 181 ------------------------~~~~~~~l~~~~~i~--~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~ 232 (305)
T COG0492 181 ------------------------EEILVERLKKNVKIE--VLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFI 232 (305)
T ss_pred ------------------------CHHHHHHHHhcCCeE--EEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEE
Confidence 13334444433 566 88999999987542 23455554334456899999999
Q ss_pred eeCCCCCccc
Q 018550 161 CNGHFSVPRL 170 (354)
Q Consensus 161 AtG~~s~~~~ 170 (354)
+.| ..|..
T Consensus 233 ~iG--~~p~~ 240 (305)
T COG0492 233 AIG--HLPNT 240 (305)
T ss_pred ecC--CCCch
Confidence 999 55554
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00048 Score=54.12 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=25.4
Q ss_pred EEEccCCCHHHHHHHHhcc-----CCEEEEEEecC
Q 018550 201 ILIGHYASGLDIKRDLAGF-----AKEVHIASRSV 230 (354)
Q Consensus 201 ~ViG~G~~g~e~a~~l~~~-----g~~v~~~~r~~ 230 (354)
+|||+|++|+-++..|.+. ..+|++|.+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 5999999999999999776 35699998855
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00036 Score=63.74 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=63.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC-C-------------------------------------------c-
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV-A-------------------------------------------D- 232 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~-~-------------------------------------------~- 232 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+ . .
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR 82 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc
Confidence 569999999999999999999999999999983 1 0
Q ss_pred --------------------------cccccCCCCC--CeEEecceeEEecCCc---EEEc-cCcEEecCEEEEcccCC
Q 018550 233 --------------------------ETHEKQPGYD--NMWLHSMVERANEDGT---VVFR-NGRVVSADVIMHCTGLT 279 (354)
Q Consensus 233 --------------------------~~~~~l~~~~--~~~~~~~v~~v~~~~~---v~~~-~g~~~~~D~vi~a~G~~ 279 (354)
.+.+++.+.+ +++.++.|+.++.++. ++++ +|+++.||+||-|=|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 83 RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCc
Confidence 0011111222 6778889999885542 6777 89999999999999976
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0037 Score=55.40 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=38.9
Q ss_pred eEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCCcccCC
Q 018550 121 VVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPRLAQ 172 (354)
Q Consensus 121 ~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~~~p~ 172 (354)
.+..+++|+.++..+++.+.+++.+. +++.++++.|.||+||| -....|.
T Consensus 294 ~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATG--Y~~~~P~ 344 (436)
T COG3486 294 RLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATG--YRRAVPS 344 (436)
T ss_pred eeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecc--cccCCch
Confidence 36778999999987755588888765 45568899999999999 5555553
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00033 Score=61.23 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=29.9
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999875
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00037 Score=64.08 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=29.0
Q ss_pred eEEEEccCCCHHHHHHHHhccC--CEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFA--KEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g--~~v~~~~r~~ 230 (354)
.|+|||+|++|+-+|..|++.| .+|+++++.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 4899999999999999999985 8999999864
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00058 Score=61.36 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=29.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||||..|+|.|.+.++.|++.++++.+-
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 359999999999999999999999988887654
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00041 Score=65.72 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=30.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
-.|+|||||+.|+++|..+++.|.+|.++++.
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence 35999999999999999999999999999987
|
|
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0013 Score=58.12 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=29.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc----CCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~----g~~v~lie~~ 34 (354)
.++|+|+||||.|.++|..|... .+++.|+|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 47999999999999999999865 4699999987
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00056 Score=63.67 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 3789999999999999999999999999998853
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00053 Score=65.01 Aligned_cols=100 Identities=22% Similarity=0.194 Sum_probs=75.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++=+|||+|.-|+.+|..|...|.++++++-.+.+ ..++
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l--MerQ--------------------------------------- 184 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL--MERQ--------------------------------------- 184 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH--HHHh---------------------------------------
Confidence 34589999999999999999999999999764321 0000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
+. ..-...|+...++.|++ ++++...+.+...+ ....+..++|+ .+.+|.||.|+
T Consensus 185 LD------------------~~ag~lL~~~le~~Gi~--~~l~~~t~ei~g~~-~~~~vr~~DG~----~i~ad~VV~a~ 239 (793)
T COG1251 185 LD------------------RTAGRLLRRKLEDLGIK--VLLEKNTEEIVGED-KVEGVRFADGT----EIPADLVVMAV 239 (793)
T ss_pred hh------------------hHHHHHHHHHHHhhcce--eecccchhhhhcCc-ceeeEeecCCC----cccceeEEEec
Confidence 00 33346677777888998 88888777777644 56678888887 89999999999
Q ss_pred CCCCCccc
Q 018550 163 GHFSVPRL 170 (354)
Q Consensus 163 G~~s~~~~ 170 (354)
| -+|+.
T Consensus 240 G--IrPn~ 245 (793)
T COG1251 240 G--IRPND 245 (793)
T ss_pred c--ccccc
Confidence 9 66664
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00059 Score=62.38 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=30.7
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 469999999999999999999999999999864
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00047 Score=63.40 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 359999999999999999999999999999864
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00064 Score=62.16 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-+|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 469999999999999999999999999999866
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00019 Score=64.54 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=30.2
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 48999999999999999999999999999984
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00061 Score=62.88 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=30.1
Q ss_pred eEEEEccCCCHHHHHHHHhccC-CEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~~ 231 (354)
+|+|||+|+.|+-+|..|++.| .+|+++++++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 6999999999999999999998 49999999763
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00052 Score=62.83 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 459999999999999999999999999999853
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00057 Score=64.75 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 469999999999999999999999999999875
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.013 Score=56.87 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=25.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC------cEEEEe
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH------TVVVYE 32 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~------~v~lie 32 (354)
++|+|||||..|+.+|..|.+.+. +|+++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 689999999999999999998753 566653
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0055 Score=59.74 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=29.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||+|..|+-+|..+.+.|. +|+++.+++
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 689999999999999999999995 799998753
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00084 Score=61.37 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=29.1
Q ss_pred EEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 200 VILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 2 viIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 8999999999999999999999999999765
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00037 Score=66.85 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCC
Q 018550 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177 (354)
Q Consensus 108 ~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~ 177 (354)
|+....++-+++ +..++.|++|..++.....|...+..+....+.++.||+|.|+...|+++...|+.
T Consensus 206 ~l~~a~~~~nl~--i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG 273 (560)
T PRK02106 206 YLDPALKRPNLT--IVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIG 273 (560)
T ss_pred hhccccCCCCcE--EEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence 333333334566 88999999998875222334444433333456899999999998889887766654
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0004 Score=68.81 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=33.3
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 468999999999999999999999999999999753
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00078 Score=62.18 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=31.2
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 3569999999999999999999999999999865
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0061 Score=61.55 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=29.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~-~v~lie~~~ 35 (354)
.++|+|||||..|+-+|..+.+. |. +|+++.++.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 36899999999999999999886 75 799999853
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00077 Score=61.47 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=29.2
Q ss_pred EEEEccCCCHHHHHHHHhccC-CEEEEEEecC
Q 018550 200 VILIGHYASGLDIKRDLAGFA-KEVHIASRSV 230 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 230 (354)
|+|||+|++|+-+|..|++.| .+|+++++.+
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 899999999999999999999 9999999864
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00075 Score=61.59 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=30.2
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||||+.|.-+|..|++.|.+|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 369999999999999999999999999999753
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00094 Score=61.11 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 469999999999999999999999999999764
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00066 Score=62.83 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=30.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||+|++|.-+|..|++.|.+|.++.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 459999999999999999999999999999864
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00078 Score=61.43 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=29.5
Q ss_pred EEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 200 VILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 8999999999999999999999999999874
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00038 Score=55.71 Aligned_cols=38 Identities=29% Similarity=0.512 Sum_probs=32.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccce
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGS 40 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~ 40 (354)
.||+|+|+|.+|+++|+.++++ +.+|.+||..-.+||.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG 116 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG 116 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCc
Confidence 4899999999999999999865 5799999997666644
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.037 Score=52.17 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~ 36 (354)
++|+|||+|..|+.+|..+.+.+. +|+++|..+.
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 689999999999999999888885 7999998653
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00092 Score=63.04 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=57.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--------cccc----------------------------------
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--------DETH---------------------------------- 235 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--------~~~~---------------------------------- 235 (354)
-.|+|||+|++|+-+|..|++.|.+|.++.+..+ ....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 4699999999999999999999999999976432 0000
Q ss_pred -----------ccCCCCCCeEEecceeEEecC-Cc---EEEccCcEEecCEEEEcccCCC
Q 018550 236 -----------EKQPGYDNMWLHSMVERANED-GT---VVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 236 -----------~~l~~~~~~~~~~~v~~v~~~-~~---v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
+++.+.+..+.+..|+.+..+ +. ++..+|.++.+|.||.|+|...
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000112322355677777633 22 3456788899999999999973
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00086 Score=63.04 Aligned_cols=33 Identities=21% Similarity=0.062 Sum_probs=30.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 469999999999999999999999999999876
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00042 Score=62.25 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=29.1
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.|+|||+|+.|+-+|..|++.|.+|+++.+++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 589999999999999999999999999999773
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00089 Score=63.29 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 359999999999999999999999999999876
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0013 Score=60.12 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRA 38 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 359999999999999999999999999999764
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0012 Score=60.66 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=30.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46999999999999999999999999999985
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00073 Score=61.98 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||||..|+|.|.+.++.|.++.+++-..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 359999999999999999999999988887654
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0012 Score=62.21 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=28.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCC--EEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~--~v~~~~r~~ 230 (354)
++|+|||+|++|+-+|..|.+.+. +|+++.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 479999999999999999987654 799999855
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00077 Score=62.14 Aligned_cols=36 Identities=22% Similarity=0.076 Sum_probs=32.1
Q ss_pred CCCeEEEEccCCCHHHHHHHHh-ccCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLA-GFAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~-~~g~~v~~~~r~~~ 231 (354)
.+++|+|||+|++|+.+|..|. +.|.+|+++.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 5789999999999999999764 67999999999885
|
|
| >KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0014 Score=55.41 Aligned_cols=34 Identities=32% Similarity=0.341 Sum_probs=28.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC-------CcEEEEeeC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKG 34 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g-------~~v~lie~~ 34 (354)
++.+|+|||+|..|++.|..+.+.. .+|++++..
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 3579999999999999998888853 588998864
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0016 Score=59.82 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 469999999999999999999999999999754
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0016 Score=59.82 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=31.2
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 679999999999999999999999999999876
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00089 Score=60.74 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+||+|||+|++|+++|..|++.|.+|.++|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.03 Score=53.88 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=28.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~ 34 (354)
.++|+|||+|..|+.++..+.+.+ .+++++.+.
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~ 300 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR 300 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence 468999999999999999999988 578888875
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00073 Score=57.93 Aligned_cols=35 Identities=34% Similarity=0.566 Sum_probs=32.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|...|-|||||.||..+|++++++|++|.|+|-++
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 34679999999999999999999999999999864
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0018 Score=58.95 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=29.2
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.|+|||+|++|+-+|..|++.|.+|+++++.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 5899999999999999999999999999975
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0016 Score=55.47 Aligned_cols=34 Identities=32% Similarity=0.365 Sum_probs=31.2
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.-.|+|||+|++|+-+|..|++.|.+|.++.+..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4569999999999999999999999999999875
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0028 Score=51.42 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=33.9
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
++....|+|||+|++|+-+|..|++.|.+|.+++|+-.
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls 64 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS 64 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecc
Confidence 34557799999999999999999999999999999763
|
|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00086 Score=63.77 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC--ceEEEEeCEEEEeeCCCCCcccCCCCCCC
Q 018550 107 RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD--VVEEETFDAVVVCNGHFSVPRLAQVPGID 177 (354)
Q Consensus 107 ~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~--~~~~~~~d~vIlAtG~~s~~~~p~~~g~~ 177 (354)
.++....+.-+++ +..++.|..|..+......+......+ .+..+..+.||+|.|....|.+....|..
T Consensus 207 a~l~~a~~~~nl~--v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig 277 (542)
T COG2303 207 AYLKPALKRPNLT--LLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIG 277 (542)
T ss_pred hcchhHhcCCceE--EecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCC
Confidence 3444444444566 889999999999874344444443222 34567889999999988888777665543
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0018 Score=60.42 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|+|+|..|+++|..|++.|++|+++|+.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999999999999999999999999999985
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0019 Score=59.18 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=30.9
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.|+|||+|++|.-+|..|++.|.+|.++.+.+.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCC
Confidence 599999999999999999999999999999774
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0021 Score=58.82 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=29.6
Q ss_pred CeEEEEccCCCHHHHHHHHhcc---CCEEEEEEec
Q 018550 198 QVVILIGHYASGLDIKRDLAGF---AKEVHIASRS 229 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~---g~~v~~~~r~ 229 (354)
-.|+|||+|++|+-+|..|++. |.+|+++++.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4599999999999999999998 9999999994
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0013 Score=60.23 Aligned_cols=30 Identities=27% Similarity=0.220 Sum_probs=27.2
Q ss_pred EEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 201 ILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 201 ~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|||+|++|+-+|..+++.|.+|+++++.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 589999999999999999999999999765
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.004 Score=53.74 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=73.9
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+-+|||||+.++.||-.|+..|++|++.-|.--+ . +|
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L-----r--------------------------------------GF 236 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL-----R--------------------------------------GF 236 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeec-----c--------------------------------------cc
Confidence 5689999999999999999999999998874211 0 11
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCEEEEee
Q 018550 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCN 162 (354)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~vIlAt 162 (354)
+ .++.+.+.+.+...|+. +.-.+...++++.+++...|..++.. +++-+-.||.|+.|.
T Consensus 237 D------------------qdmae~v~~~m~~~Gik--f~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~Ai 296 (503)
T KOG4716|consen 237 D------------------QDMAELVAEHMEERGIK--FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAI 296 (503)
T ss_pred c------------------HHHHHHHHHHHHHhCCc--eeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhh
Confidence 1 78888889999999998 66666777888766566666655432 223466899999999
Q ss_pred CC
Q 018550 163 GH 164 (354)
Q Consensus 163 G~ 164 (354)
|.
T Consensus 297 GR 298 (503)
T KOG4716|consen 297 GR 298 (503)
T ss_pred cc
Confidence 93
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0019 Score=59.81 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 359999999999999999999999999999865
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00078 Score=62.32 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=26.7
Q ss_pred EEEEccCCCHHHHHHHHhccCCEEEEEEecCC-------------------------------cccc-------------
Q 018550 200 VILIGHYASGLDIKRDLAGFAKEVHIASRSVA-------------------------------DETH------------- 235 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-------------------------------~~~~------------- 235 (354)
|+|||||+.|+-+|...++.|.+|.|+++.+. +...
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~ 81 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW 81 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence 89999999999999999999999999999873 0000
Q ss_pred ---------------cc-CCCCC-CeEEecceeEEecCC-c---EEEcc--C-cEEecCEEEEcccCC
Q 018550 236 ---------------EK-QPGYD-NMWLHSMVERANEDG-T---VVFRN--G-RVVSADVIMHCTGLT 279 (354)
Q Consensus 236 ---------------~~-l~~~~-~~~~~~~v~~v~~~~-~---v~~~~--g-~~~~~D~vi~a~G~~ 279 (354)
.+ +.+.+ +++.++.+.++..++ + |++.+ | .++.++.+|-|||.-
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g 149 (428)
T PF12831_consen 82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDG 149 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 11223 678888888887554 2 55554 3 678999999999953
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0015 Score=60.71 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=26.7
Q ss_pred eEEEEccCCCHHHHHHHHhccC---CEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFA---KEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g---~~v~~~~r~~ 230 (354)
+|+|||||+.|.-+|..|++.+ .+|+++++..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 5899999999999999999987 7899999986
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.001 Score=63.40 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCC
Q 018550 105 VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177 (354)
Q Consensus 105 ~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~ 177 (354)
...|+.....+.+++ +..++.|.+|..+++....|...++.+......++.||+|.|+...|+++...|+.
T Consensus 196 ~~~~l~~a~~r~nl~--i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 196 ARAYLHPAMKRPNLE--VQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred HHHHhhhhccCCCeE--EEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 344555444445676 99999999999865222334444432222345899999999998888877666543
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0028 Score=60.11 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=28.8
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.|+|||+|++|+++|..+++.|.+|.++.+.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~ 32 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence 4899999999999999999999999999875
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0014 Score=64.73 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=36.4
Q ss_pred CCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 192 PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 192 ~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+....+++|+|||+|+.|+-+|..|.+.|..|++..|+++
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 3445789999999999999999999999999999999986
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0021 Score=55.01 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=31.5
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
....|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 34569999999999999999999999999999865
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00095 Score=54.85 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=47.8
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeEEecceeEEecCCcEEEccCcEEecCEEEEc
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHC 275 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~l~~~~~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a 275 (354)
.+++|+|||||.+|..-+..|.+.|++|+++.....++ +..+.+.++ ++.+..+- ..+..-.+|+||.|
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~-l~~l~~~~~------i~~~~~~~----~~~dl~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESE-LTLLAEQGG------ITWLARCF----DADILEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHH-HHHHHHcCC------EEEEeCCC----CHHHhCCcEEEEEC
Confidence 57899999999999999999999999999998765322 222222222 22222111 01111248899999
Q ss_pred ccCC
Q 018550 276 TGLT 279 (354)
Q Consensus 276 ~G~~ 279 (354)
||-.
T Consensus 77 t~d~ 80 (205)
T TIGR01470 77 TDDE 80 (205)
T ss_pred CCCH
Confidence 9885
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0024 Score=58.44 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=29.6
Q ss_pred eEEEEccCCCHHHHHHHHhcc--CCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGF--AKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~ 230 (354)
.|+|||||.+|+-+|..|++. |.+|+++.+.+
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 599999999999999999998 99999999863
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0036 Score=57.34 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 569999999999999999999999999999875
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.001 Score=61.31 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=34.5
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
...+++|+|||+|+.|+.+|..|++.|..|+++.+.+.
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 34569999999999999999999999999999998775
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0018 Score=62.07 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.+|++|||+|.+|+.+|..|++ +.+|+|+|++.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 4799999999999999999999 69999999985
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0023 Score=53.58 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=30.4
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|+|||+|..|+-+|..|...|.+|+++.++.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 58999999999999999999999999999876
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0031 Score=57.87 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=29.2
Q ss_pred CeEEEEccCCCHHHHHHHHhccC----CEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFA----KEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g----~~v~~~~r~~ 230 (354)
..|+|||||++|+-+|..|++.| .+|+++++.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 46999999999999999999886 4799999864
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0033 Score=57.17 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccC--CEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g--~~v~~~~r~~ 230 (354)
-.|+|||||.+|+-+|.+|++.. .+|.++++.+
T Consensus 4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~ 38 (429)
T COG0579 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKED 38 (429)
T ss_pred eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 35999999999999999999998 8999999977
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0024 Score=50.17 Aligned_cols=32 Identities=38% Similarity=0.627 Sum_probs=30.3
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+|+|||||..|.++|..|+++|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999999864
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0027 Score=54.72 Aligned_cols=39 Identities=38% Similarity=0.660 Sum_probs=34.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC--Cccce
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--QVGGS 40 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~--~~gg~ 40 (354)
..+|+|||+|.||+.+|.+|+..|.+|+++|.+. .+||+
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 3689999999999999999999999999999864 35544
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0039 Score=59.64 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 569999999999999999999999999999876
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0058 Score=59.96 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=30.7
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|.+|+-+|..|+++|.+|+++.+..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 579999999999999999999999999999863
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0068 Score=58.56 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=32.2
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+..+|+|||||+.|+-+|..|++.|.+|++++|.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 55779999999999999999999999999999854
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0019 Score=53.64 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=53.2
Q ss_pred EEEEccCCCHHHHHHHHhcc--CCEEEEEEecCC----------ccccccC----------CCCCCeEEecceeEEecCC
Q 018550 200 VILIGHYASGLDIKRDLAGF--AKEVHIASRSVA----------DETHEKQ----------PGYDNMWLHSMVERANEDG 257 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~~----------~~~~~~l----------~~~~~~~~~~~v~~v~~~~ 257 (354)
.+|||||..|+-+|..|+.. .++|.+++.++- .+.+++. ...-+-.++. |.......
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~~~s~e 80 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVTWDSSE 80 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhhhcccc
Confidence 58999999999999999765 677888888874 1111111 1111111112 33333222
Q ss_pred c-EEEccCcEEecCEEEEcccCC
Q 018550 258 T-VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 258 ~-v~~~~g~~~~~D~vi~a~G~~ 279 (354)
. +++.+|.++.++.+.+|+|++
T Consensus 81 hci~t~~g~~~ky~kKOG~tg~k 103 (334)
T KOG2755|consen 81 HCIHTQNGEKLKYFKLCLCTGYK 103 (334)
T ss_pred ceEEecCCceeeEEEEEEecCCC
Confidence 2 889999999999999999999
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0051 Score=55.38 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=28.7
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|++|+-+|..|++. .+|+++.+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 589999999999999999998 8999999865
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0026 Score=42.06 Aligned_cols=30 Identities=27% Similarity=0.229 Sum_probs=27.3
Q ss_pred EEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 202 LIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 202 ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998874
|
... |
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0042 Score=56.22 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=33.6
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
-.++++|||||.+|++.|..|++.|-+|+++.+.+.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 358899999999999999999999999999999885
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.027 Score=51.78 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEE-EEeecCCceEEEEeCEEEEeeCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV-KSRKKDDVVEEETFDAVVVCNGH 164 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v-~~~~g~~~~~~~~~d~vIlAtG~ 164 (354)
.++.+.+.+.+.+.|++ +..+++|.++...+ +.... ...++ ....+.+|.+|+|+|.
T Consensus 259 ~rL~~aL~~~l~~~Gv~--I~~g~~V~~v~~~~-~~V~~v~~~~g--~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 259 LRLQNALRRAFERLGGR--IMPGDEVLGAEFEG-GRVTAVWTRNH--GDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CEEEEEEeeCC--ceEEEECCEEEEeCCC
Confidence 45777788888888988 99999999998766 44433 23222 2357899999999994
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0089 Score=53.22 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=30.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+|+|||||.+|+-.|..|++.|-+|.+++.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 569999999999999999999999999999855
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0058 Score=58.58 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 569999999999999999999999999999876
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0062 Score=56.07 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=30.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||||++|+-+|..|++.|.+|+++.+.+
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 569999999999999999999999999999864
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0092 Score=54.60 Aligned_cols=33 Identities=27% Similarity=0.220 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 569999999999999999999999999999866
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.01 Score=54.72 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=30.2
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 59999999999999999999999999999876
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0057 Score=49.23 Aligned_cols=32 Identities=38% Similarity=0.610 Sum_probs=28.3
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 68999999999999999999999999999864
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0056 Score=51.18 Aligned_cols=34 Identities=41% Similarity=0.712 Sum_probs=31.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
++++|||+|..|..+|..|.+.|++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 5799999999999999999999999999999753
|
|
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0042 Score=55.69 Aligned_cols=39 Identities=36% Similarity=0.558 Sum_probs=35.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccce
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~ 40 (354)
.+|++|||+|.-|+.+|..|++.|.+|+++|++...||.
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGa 52 (561)
T KOG4254|consen 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGA 52 (561)
T ss_pred ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcc
Confidence 579999999999999999999999999999998666544
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0098 Score=54.39 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=29.5
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.|+|||+|++|.-+|..|++.|.+|.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999999999987
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0085 Score=57.46 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..+|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3569999999999999999999999999999876
|
|
| >PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.038 Score=53.13 Aligned_cols=64 Identities=11% Similarity=-0.084 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC-cEEEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
...+...+.+.+.+.+++ +..++.++++..++++ ..-+...+ .++....+.++.||+|||.+..
T Consensus 125 G~~i~~~L~~~~~~~gi~--i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTT--FLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHHHHHHHhccCCE--EEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence 467788888877777888 8999999999875323 22333322 2334567899999999997553
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0062 Score=49.19 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=27.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
++|.|||.|+.|+..|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5899999999999999999999999999998653
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.006 Score=44.13 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=31.9
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++++++|||+|..|..-+..|.+.|++|++++...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 67999999999999999999999999999998874
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0056 Score=44.28 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=30.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||+|..|..-+..|.+.|.+|+++.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 578999999999999999999999999999985
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0089 Score=49.05 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=31.9
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+++|+|||||.+|...+..|.+.|.+|+++.+..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 67999999999999999999999999999997643
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0061 Score=55.40 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++|+|||||++|+++|..|++.|.+|+++.+++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 579999999999999999999999999999644
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.014 Score=45.84 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=29.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~ 33 (354)
.++|+|||||..|..-+..|.+.|.+|+++++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 47899999999999999999999999999964
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.015 Score=47.88 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||||..|..-+..|.+.|.+|+|++++
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 478999999999999999999999999999875
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.009 Score=56.25 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQV 37 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~ 37 (354)
.+|.+|||||-||+.+|..|++. .++|.|+|++...
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 58999999999999999999997 5899999997554
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.012 Score=52.67 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
|+++|.|||+|..|...|..|++.|++|+++++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 6789999999999999999999999999999985
|
|
| >TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.028 Score=51.25 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
+...+...+.+.+.+ |++ ++.+++|++++.++ +.|.+.+.++. .+.+|.||+|+|.|+...
T Consensus 133 dp~~~~~~l~~~~~~-G~~--i~~~~~V~~i~~~~-~~~~v~t~~g~----~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 133 SPPQLCRALLAHAGI-RLT--LHFNTEITSLERDG-EGWQLLDANGE----VIAASVVVLANGAQAGQL 193 (381)
T ss_pred ChHHHHHHHHhccCC-CcE--EEeCCEEEEEEEcC-CeEEEEeCCCC----EEEcCEEEEcCCcccccc
Confidence 446777777777777 888 89999999998866 67888877763 589999999999876543
|
In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.013 Score=51.71 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=31.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||+|..|.+.|..|+++|++|+++|+.+
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 3579999999999999999999999999999864
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.02 Score=53.29 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=28.1
Q ss_pred eEEEEccCCCHHHHHHHHhc----cCCEEEEEEe
Q 018550 199 VVILIGHYASGLDIKRDLAG----FAKEVHIASR 228 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~----~g~~v~~~~r 228 (354)
.|+|||+|++|+-+|..|++ .|.+|+++.+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~ 35 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA 35 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence 48999999999999999998 7999999998
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.035 Score=50.65 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=28.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccC---CEEEEEEecCC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFA---KEVHIASRSVA 231 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g---~~v~~~~r~~~ 231 (354)
.+|+|||+|.+|+.+|.+|.+.- ..|+++..++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 47999999999999999997652 23999988774
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.25 Score=43.30 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=69.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.|+|+|||||-+|+.+|..|+.-=-.|+++|=.+.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL-------------------------------------------- 389 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL-------------------------------------------- 389 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh--------------------------------------------
Confidence 479999999999999999998766689999854322
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vI 159 (354)
+....+++.+.. .+++ +..+..-++|.-+.++--.+...+. .+++..+.-+-|.
T Consensus 390 ----------------------kAD~VLq~kl~sl~Nv~--ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvF 445 (520)
T COG3634 390 ----------------------KADAVLQDKLRSLPNVT--IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVF 445 (520)
T ss_pred ----------------------hhHHHHHHHHhcCCCcE--EEecceeeEEecCCceecceEEEeccCCceeEEEeeeeE
Confidence 112334444443 3666 8888888888766423233444442 3445677778889
Q ss_pred EeeCCCCCcccCCCCC
Q 018550 160 VCNGHFSVPRLAQVPG 175 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g 175 (354)
+-.| -.|+...++|
T Consensus 446 VqIG--L~PNT~WLkg 459 (520)
T COG3634 446 VQIG--LLPNTEWLKG 459 (520)
T ss_pred EEEe--cccChhHhhc
Confidence 9999 5666555554
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.013 Score=54.95 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=30.7
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
+|+|||.|++|+++|+.|.+.|++|+++|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998654
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.018 Score=50.77 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
|.++|+|||+|..|...|..|++.|.+|+++.+.
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 5689999999999999999999999999999995
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.016 Score=54.91 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=30.1
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 459999999999999999999999999999755
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.017 Score=47.82 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=32.7
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
++++|+|||||.+|..=+..|.+.|++|++++..-.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 568999999999999999999999999999987654
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.029 Score=48.64 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
...++|||+|..|+-.|.+|+++|.++.++.+-+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~ 40 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP 40 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence 3568999999999999999999999999988866
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.016 Score=50.40 Aligned_cols=34 Identities=35% Similarity=0.585 Sum_probs=31.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
++|.|||+|..|...|..+++.|++|+++|..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5799999999999999999999999999998653
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.022 Score=46.75 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||||-.|...+..|.+.|.+|+++++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 478999999999999999999999999999864
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.023 Score=43.36 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=30.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
.++|+|||+|--|..+|..|++.|. +++++|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4789999999999999999999998 79999975
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.018 Score=50.75 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=31.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..++.+|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 679999999999999999999999999999864
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.018 Score=50.33 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|+++|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 579999999999999999999999999999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 354 | ||||
| 2xvi_A | 464 | Crystal Structure Of The Mutant Bacterial Flavin Co | 3e-23 | ||
| 2xve_A | 464 | Crystal Structure Of Bacterial Flavin-Containing Mo | 8e-23 | ||
| 2xvf_A | 464 | Crystal Structure Of Bacterial Flavin-Containing Mo | 2e-22 | ||
| 2vq7_A | 461 | Bacterial Flavin-Containing Monooxygenase In Comple | 4e-22 | ||
| 2xlr_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 1e-21 | ||
| 2xlp_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 2e-21 | ||
| 2xls_A | 461 | Joint-Functions Of Protein Residues And Nadp(H) In | 2e-21 | ||
| 1vqw_A | 457 | Crystal Structure Of A Protein With Similarity To F | 9e-16 | ||
| 2gv8_A | 447 | Crystal Structure Of Flavin-Containing Monooxygenas | 9e-16 | ||
| 2ylx_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 7e-11 | ||
| 2ylw_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 1e-10 | ||
| 1w4x_A | 542 | Phenylacetone Monooxygenase, A Baeyer-villiger Mono | 1e-10 | ||
| 2ylz_A | 542 | Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O | 2e-10 | ||
| 3uov_A | 545 | Crystal Structure Of Otemo (Fad Bound Form 1) Lengt | 7e-10 | ||
| 4ap1_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 5e-06 | ||
| 4aos_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 5e-06 | ||
| 4ap3_A | 549 | Oxidized Steroid Monooxygenase Bound To Nadp Length | 6e-06 | ||
| 3ucl_A | 573 | Cyclohexanone-Bound Crystal Structure Of Cyclohexan | 3e-05 | ||
| 3gwd_A | 540 | Closed Crystal Structure Of Cyclohexanone Monooxyge | 3e-05 | ||
| 4a9w_A | 357 | Flavin-Containing Monooxygenase From Stenotrophomon | 3e-04 |
| >pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464 | Back alignment and structure |
|
| >pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464 | Back alignment and structure |
|
| >pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464 | Back alignment and structure |
|
| >pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461 | Back alignment and structure |
|
| >pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461 | Back alignment and structure |
|
| >pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461 | Back alignment and structure |
|
| >pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin- Containing Monooxygenases And To Mammalian Dimethylalanine Monooxygenases Length = 457 | Back alignment and structure |
|
| >pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo) From S.Pombe And Nadph Cofactor Complex Length = 447 | Back alignment and structure |
|
| >pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Asp66ala Mutant In Complex With Nadp And Mes Length = 542 | Back alignment and structure |
|
| >pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Arg337lys Mutant In Complex With Mes Length = 542 | Back alignment and structure |
|
| >pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger Monooxygenase Length = 542 | Back alignment and structure |
|
| >pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Met446gly Mutant Length = 542 | Back alignment and structure |
|
| >pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1) Length = 545 | Back alignment and structure |
|
| >pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549 | Back alignment and structure |
|
| >pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone Monooxygenase In The Rotated Conformation Length = 573 | Back alignment and structure |
|
| >pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase Length = 540 | Back alignment and structure |
|
| >pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447 | Back alignment and structure |
|---|
Score = 262 bits (670), Expect = 2e-84
Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 38/298 (12%)
Query: 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETE------------ 48
R +A+IGAG +GLV LL E V ++E+ GG W YTS
Sbjct: 7 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 66
Query: 49 -SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR 107
++P+ S LY+ L+ N P ELMG+ F ++P +
Sbjct: 67 TTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKP-------QTLQFPHRHTIQE 119
Query: 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR--KKDDVVEEETFDAVVVCNGHF 165
Y + +A+ + ++L T+VL+ + W V + K + ++ FDAV +CNGH+
Sbjct: 120 YQRIYAQ--PLLPFIKLATDVLDIEK-KDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY 176
Query: 166 SVPRLAQVPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221
VP + + G+D + PG +HS +R P F + V+++G +S D+ R L AK
Sbjct: 177 EVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAK 236
Query: 222 EVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSA--DVIMHCTG 277
S + +++ + + + ++ G V + D +++CTG
Sbjct: 237 HPIYQSLLGGGDIQ-----NESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTG 289
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 261 bits (667), Expect = 7e-84
Identities = 79/285 (27%), Positives = 125/285 (43%), Gaps = 20/285 (7%)
Query: 1 MFRHVAVIGAGAAGLVVGHELL------REGHTVVVYEKGEQVGGSWIYTSETESDPLGV 54
M +A++GAG +G+ E +V +EK GG W YT G+
Sbjct: 1 MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYT-----WRTGL 55
Query: 55 DPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR 114
D N PVHSS+Y+ L N P+E + F Y F + YP E + Y++
Sbjct: 56 DENGEPVHSSMYRYLWSNGPKECLEFADYTFDE---HFGKPIASYPPREVLWDYIKGRVE 112
Query: 115 EFGVDQVVRLHTEVLNARLVE-SNKWKVKSR-KKDDVVEEETFDAVVVCNGHFSVPRLAQ 172
+ GV + +R +T V + E S + V + D + E FD VV C GHFS P + +
Sbjct: 113 KAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPE 172
Query: 173 VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD 232
G + + G+ +H+H++R F+D+ V+L+G S DI + + I+ A
Sbjct: 173 FEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP 232
Query: 233 ETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
++ +D V + F +G D I+ CTG
Sbjct: 233 MGYKWPENWDERPNLVRV----DTENAYFADGSSEKVDAIILCTG 273
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 7e-49
Identities = 61/313 (19%), Positives = 103/313 (32%), Gaps = 76/313 (24%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
V VIG G +GL G+ L R G + V+ + GG+W + +
Sbjct: 6 VVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAW--------------QHAWH---- 47
Query: 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
SL + P +P A YP EVL YL + +++ + V
Sbjct: 48 ---SLHLFSPAGWSSIPGWPMPA-------SQGPYPARAEVLAYLAQYEQKYALP--VLR 95
Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQM 184
V + +V +R + AV+ G + + G++S+ G Q+
Sbjct: 96 PIRVQRVSHFG-ERLRVVARDG----RQWLARAVISATGTWGEAYTPEYQGLESFAGIQL 150
Query: 185 HSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------------- 231
HS +Y P PF V +IG SG I +++ A+ I A
Sbjct: 151 HSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFE 210
Query: 232 -------DETHEKQPGYDNMWL--------------------HSMVERANEDGTVVFRNG 264
+ ++P R + G + + +G
Sbjct: 211 RATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTG-MQWADG 269
Query: 265 RVVSADVIMHCTG 277
+ D ++ CTG
Sbjct: 270 TERAFDAVIWCTG 282
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 6e-32
Identities = 53/315 (16%), Positives = 94/315 (29%), Gaps = 68/315 (21%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH-- 62
VA+IGAGAAG+ + L G T V+ + VG S+ +P
Sbjct: 7 VAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFK---------------HWPKSTR 51
Query: 63 ---SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
S + + P N + E YLQ A + ++
Sbjct: 52 TITPSFTSNGFGMPDMNAISMDTSPAFTFN-------EEHISGETYAEYLQVVANHYELN 104
Query: 120 QVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW 179
+ +T V N + + + + E D + V G ++ P+ GI
Sbjct: 105 --IFENTVVTNISADD-AYYTIATTT-----ETYHADYIFVATGDYNFPKKPFKYGI--- 153
Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP 239
H + F ++IG SG D LA ++ + + + + P
Sbjct: 154 -----HYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADP 208
Query: 240 GYD---------------------NMWLHSMVERANEDG-TVVFRNGRVV-SADVIMHCT 276
N+ N + F +G+ V + + T
Sbjct: 209 SVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILAT 268
Query: 277 GLTGTSTTTLFLKPM 291
G T ++ +
Sbjct: 269 GFDA--TKNPIVQQL 281
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 57/218 (26%), Positives = 84/218 (38%), Gaps = 45/218 (20%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP---- 60
VIGAG G+ + + G V+ E GE VGG+W + NRYP
Sbjct: 12 AVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYW-------------NRYPGCRL 58
Query: 61 -VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
S Y G+ A + +E S + E+LRY+ A V
Sbjct: 59 DTESYAY------------GYFALKGIIPEWEWS---ENFASQPEMLRYVNRAADAMDVR 103
Query: 120 QVVRLHTEVLNARLVE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDS 178
+ R +T V AR VE W+V ++ T ++ G S R+ + GIDS
Sbjct: 104 KHYRFNTRVTAARYVENDRLWEVTLDNEE----VVTCRFLISATGPLSASRMPDIKGIDS 159
Query: 179 WPGKQMHS----HNYRIPNP---FQDQVVILIGHYASG 209
+ G+ HS + F + V +IG A+G
Sbjct: 160 FKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATG 197
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP---- 60
V V+GAG AGL H +G TV +E VGG W + NRYP
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYW-------------NRYPGARC 70
Query: 61 -VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
V S Y +Y F + +Y E+L YL++ A F +
Sbjct: 71 DVESIDY---------------SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLR 115
Query: 120 QVVRLHTEVLNARLVE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDS 178
+ +R T V +A L E +W V++ + D+V + +VV G S G+D
Sbjct: 116 RDIRFDTRVTSAVLDEEGLRWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDR 171
Query: 179 WPGKQMHS 186
+ G +H+
Sbjct: 172 FTGDIVHT 179
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 44/191 (23%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP---- 60
V V+GAG +GL + L G +V V E VGG W + NRYP
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW-------------NRYPGARC 65
Query: 61 -VHSSLYKSLRVNLPRELMGFQAYPF---VARNYEGSVDLRRYPGHEEVLRYLQNFAREF 116
+ S Y Y F V + + + RY E+LRY+ A +F
Sbjct: 66 DIESIEY---------------CYSFSEEVLQEWNWT---ERYASQPEILRYINFVADKF 107
Query: 117 GVDQVVRLHTEVLNARLVE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPG 175
+ + HT V A E +N W V + D + +++ +G SVP+L PG
Sbjct: 108 DLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRI----RARYLIMASGQLSVPQLPNFPG 163
Query: 176 IDSWPGKQMHS 186
+ + G H+
Sbjct: 164 LKDFAGNLYHT 174
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 49/217 (22%)
Query: 5 VAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP--- 60
VIGAG G+ H+L E G T V ++K + GG+W Y NRYP
Sbjct: 11 AVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTW-YW------------NRYPGAL 57
Query: 61 --VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVD-LRRYPGHEEVLRYLQNFAREFG 117
S LY + F R+ Y E+L YL++ F
Sbjct: 58 SDTESHLY---------------RFSF-DRDLLQESTWKTTYITQPEILEYLEDVVDRFD 101
Query: 118 VDQVVRLHTEVLNARLVE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI 176
+ + + TEV +A ++ N W+V + E VV G S +PG+
Sbjct: 102 LRRHFKFGTEVTSALYLDDENLWEVTTDHG----EVYRAKYVVNAVGLLSAINFPNLPGL 157
Query: 177 DSWPGKQMHS----HNYRIPNPFQDQVVILIGHYASG 209
D++ G+ +H+ + V +IG ++G
Sbjct: 158 DTFEGETIHTAAWPEGK----SLAGRRVGVIGTGSTG 190
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 1e-12
Identities = 47/243 (19%), Positives = 75/243 (30%), Gaps = 32/243 (13%)
Query: 5 VAVIGAGAAGLVVGHELLREGH-----TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY 59
+ +G G + + + L V+ +K W + L +
Sbjct: 33 LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQI----- 85
Query: 60 PVHSSLYKSLRVNLPRELMGFQAYPFVA-RNYEGSVDLRRYPGHEEVLRYLQNFAREFGV 118
S L + + P F Y R + YP E YL+ A F
Sbjct: 86 ---SFLKDLVSLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQE 142
Query: 119 DQVVRLHTEVLNARLVESN----KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVP 174
R EVL + S +V SR D T A+VV G PR+ QV
Sbjct: 143 Q--SRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPG--GTPRIPQVF 198
Query: 175 GIDSWPGKQMHSHNY------RIPNPFQDQVVILIGHYASGLDIKRDLA--GFAKEVHIA 226
G+ H Y + + + + +IG S + DL + + +
Sbjct: 199 RALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMI 258
Query: 227 SRS 229
R+
Sbjct: 259 LRA 261
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 5e-10
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE 48
+ VAVIGAG +GL ++L G V V+E + GG + + +
Sbjct: 14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG-KLRSVSQD 58
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 5e-10
Identities = 40/234 (17%), Positives = 67/234 (28%), Gaps = 80/234 (34%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+++AV+GAG AGL GH V +++ ++GG + P +
Sbjct: 374 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK--------QIPGK---- 421
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
E LRY + GV +
Sbjct: 422 ------------EEFYET-------------------------LRYYRRMIEVTGVT--L 442
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDS---W 179
+L+ V + + FD ++ +G VPR + GID
Sbjct: 443 KLNHTV-------------------TADQLQAFDETILASG--IVPRTPPIDGIDHPKVL 481
Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE 233
+ P ++V I IG G D L+ + +E
Sbjct: 482 SYLDVLRD----KAPVGNKVAI-IGCGGIGFDTAMYLSQPGESTSQNIAGFCNE 530
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 2e-09
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
+VAV+G G +GL V H L G V+ E ++GG + T +
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG-AVGTHALAGYLV 65
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 3e-09
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETE 48
M R V V+G G +GL + L R VV+ E E++GG WI +
Sbjct: 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG-WIRSVRGP 49
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-09
Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 4/116 (3%)
Query: 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGG-SWIYTSETESDPLGVD--PNR 58
+A+IGAG AGL G L + G H + E+ + VGG +G
Sbjct: 7 SRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPS 66
Query: 59 YPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR 114
Y + + + + Y D R P ++ L
Sbjct: 67 YDTIQEIMDRTGDKVDGPKLRREFLHEDGEIYVPEKDPVRGPQVMAAVQKLGQLLA 122
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376 | Back alignment and structure |
|---|
Score = 55.4 bits (132), Expect = 9e-09
Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 12/142 (8%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYE-KGEQVGG-SWIYTSETESDPLGVDPN--- 57
+ + ++GAG AGLV G L R GH V + E +VGG + ++ DP
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYA 104
Query: 58 -----RYPVHSSLYKSL--RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQ 110
R P L +L ++ L R L N + V Y ++ +
Sbjct: 105 EAGAMRLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTN 164
Query: 111 NFAREFGVDQVVRLHTEVLNAR 132
+ R HT + R
Sbjct: 165 GAPSPEFKEPDKRNHTWIRTNR 186
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 43/280 (15%), Positives = 75/280 (26%), Gaps = 83/280 (29%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
V ++GAG +G L+ G+TV + + E++GG + P
Sbjct: 390 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVA--------ALPGL---- 437
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
E Y + Q+
Sbjct: 438 ------------GEWSYH-------------------------RDYRET--------QIT 452
Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ--------VP 174
+L + ++L K D V + D V++ G + +P
Sbjct: 453 KLLKKNKESQLALGQKPMTA-----DDVLQYGADKVIIATG--ARWNTDGTNCLTHDPIP 505
Query: 175 GIDSWPGKQMHSHN-YRIPNPFQDQVVIL-IGHYASGLDIKRDLAGFAKEVHIASRSVAD 232
G D+ Q+ +VVIL Y + LA EV I
Sbjct: 506 GADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIV------ 559
Query: 233 ETHEKQPGYDNMWLH--SMVERANEDGTVVFRNGRVVSAD 270
+ Y + L +M+ R +E + +
Sbjct: 560 -SGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIE 598
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
V+GAG GL+ G L R GH ++V EK +GG
Sbjct: 3 AVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG 37
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 3e-08
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETE 48
+ + ++G G GL + R + + E GE++GG + T +
Sbjct: 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG-KVATYRED 51
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 4e-08
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
V VIGAG AGL EL +G+ V VY++ +++GG
Sbjct: 125 VGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG 159
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 4e-08
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD--PNRYP 60
+HV ++GAG AGL + L GH V V E E+ GG + T E + P R P
Sbjct: 34 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR-VRTYRNEEAGWYANLGPMRLP 92
Query: 61 VH 62
Sbjct: 93 EK 94
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 6e-08
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 3 RHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETE 48
+HV +IG G GL + +E + + E +VGG I T + +
Sbjct: 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG-KIQTVKKD 56
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 6e-08
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 1 MFRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETE 48
+ + +IGAG GL L G+ +YE + GG + E
Sbjct: 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG-LSRSFLDE 55
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 7e-08
Identities = 49/301 (16%), Positives = 75/301 (24%), Gaps = 97/301 (32%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
V V+GAG +GL L G+ VV+ E G +GG
Sbjct: 392 ARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGG----------------------- 428
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-FAREFGVDQV 121
RV G R V Y + A V+
Sbjct: 429 -------RVTQ-------------ESALPGLSAWGR------VKEYREAVLAELPNVE-- 460
Query: 122 VRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPG 181
+ + + D + E F+ V+ G + R V +
Sbjct: 461 IYRESPM-----------------TGDDIVEFGFEHVITATG--ATWRTDGVARFHTTAL 501
Query: 182 KQMHSHN-------YRIPNPFQDQVVIL-IGHYASGLDIKRDLAGFAKEVHIASRSVADE 233
+ P +VV+ HY G + LA EV I +
Sbjct: 502 PIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVS 561
Query: 234 THEKQPGYDNMWLHSM------------VERANEDGTVVFRNG-----RVVSADVIMHCT 276
+ N + V G V R+ R + D ++ T
Sbjct: 562 SWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG-VTVRDTYASIERELECDAVVMVT 620
Query: 277 G 277
Sbjct: 621 A 621
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 9e-08
Identities = 34/172 (19%), Positives = 58/172 (33%), Gaps = 17/172 (9%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKG----EQVGGSWI-YTSETESDPLGVDPNRY 59
+ VIG G G + + GH V++ E+ Q+G S + T LG+
Sbjct: 10 LIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMK 69
Query: 60 PVHSSLYKSLRVNLPRE----LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE 115
+ + +E GF +P + V+ R L +
Sbjct: 70 RAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVE-RA-----RFDDMLLRNSER 123
Query: 116 FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167
GVD VR EV++ V+ R + V +V +G+ +
Sbjct: 124 KGVD--VRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTR 173
|
| >3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 1e-07
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 1 MFRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETE 48
+ V VIGAG GL L + G + ++ + E GG T T
Sbjct: 9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG-LASTDVTP 56
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-07
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
++G+G G V +EL + V+V EK +GG+ YT + E G+ ++Y H
Sbjct: 4 YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN-AYTEDCE----GIQIHKYGAH 56
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 3e-07
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE 48
+ ++GAG +G V+G +L +GH V + ++ + +GG+ Y +
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN-SYDARDS 48
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 5e-07
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
++GAG AG V+ L G V++ ++ +GG+ Y ++ L
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGN-AYDCYDDAGVL 78
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 5e-07
Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 22/114 (19%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYE----------------KGEQVGGSWIYTSE 46
V V+G G AGL EL + G+ V V E + + G +
Sbjct: 12 HSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTF 71
Query: 47 TESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYP 100
+E V R P REL G + F +N V+ +
Sbjct: 72 SEGHFYNVGATRIPQSHITLD-----YCREL-GVEIQGFGNQNANTFVNYQSDT 119
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 7e-07
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGG 39
+A++GAG A + L R G++ + ++EK E VGG
Sbjct: 188 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 24/138 (17%)
Query: 99 YPGHEEVLRY-----LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153
G ++ L+ +F + L V + +K+ + ++
Sbjct: 58 VAGFPKIRAQELINNLKEQMAKFDQT--ICLEQAVESVEKQADGVFKLVTNEE------- 108
Query: 154 TFDA--VVVC--NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP--FQDQVVILIGHYA 207
T + V++ NG F PR ++ + + GK +H Y + + F + V ++G
Sbjct: 109 THYSKTVIITAGNGAF-KPRKLELENAEQYEGKNLH---YFVDDLQKFAGRRVAILGGGD 164
Query: 208 SGLDIKRDLAGFAKEVHI 225
S +D L AKEV I
Sbjct: 165 SAVDWALMLEPIAKEVSI 182
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 13/168 (7%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGE----QVGGSWIYTSETESDPLGVDPNRYP 60
V VIGAG AG V + + G V + EK + +G S + D G
Sbjct: 8 VLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLD-AVK 66
Query: 61 VHSSLYK-SLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
K + +E+ F + + + + R + L + A GVD
Sbjct: 67 AQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPR----GNFDKTLADEAARQGVD 122
Query: 120 QVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167
V V + + + E ++ +G+ V
Sbjct: 123 --VEYEVGVTDIKF-FGTDSVTTIEDINGNKREIEARFIIDASGYGRV 167
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 54/197 (27%)
Query: 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG------- 53
+ +IGAGAAGL +L + G +V V++ G+++ G I S G
Sbjct: 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI-GRKILMS-------GGGFCNFT 54
Query: 54 ---VDPNRYPVHSS----LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEE-- 104
V P Y S + +L + + V + HE+
Sbjct: 55 NLEVTPAHY--LSQNPHFVKSALARYTNWDFISL-------------VAEQGITYHEKEL 99
Query: 105 -----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153
++ L++ ++G + L +EV +++++ + + +
Sbjct: 100 GQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEKVRFVLQVNS--TQW 155
Query: 154 TFDAVVVCNGHFSVPRL 170
++V G S+P L
Sbjct: 156 QCKNLIVATGGLSMPGL 172
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 3e-06
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 5 VAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
+ V+G+G GL + + + V+V E+ +GG+ Y+ G++ ++Y H
Sbjct: 10 LFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGN-AYSEAEPQT--GIEVHKYGAHL 66
Query: 64 SLYKSLRV 71
+ RV
Sbjct: 67 FHTSNKRV 74
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
R VA++GAG +GL L + G +V V E ++VGG
Sbjct: 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG 42
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 4e-06
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP 51
V+G G +GL +L G V++ E GE++GG Y+ E+ + P
Sbjct: 4 AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGR-AYSRESRNVP 49
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 4e-06
Identities = 41/212 (19%), Positives = 78/212 (36%), Gaps = 16/212 (7%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKG----EQVGGSWIYTSETESDPLGVDPNRYP 60
VA+IG G AG V G L + GH V +YE+ +VG S + + + + LG+
Sbjct: 26 VAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDA 85
Query: 61 VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGH---EEVLRYLQNFAREFG 117
+ S ++ + F + + + + EE + L + AR G
Sbjct: 86 QNYVKKPSATFLWGQDQAPW---TFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRG 142
Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS-VPRLAQVPGI 176
+ V T V + + V + ++ D V+ G + R V
Sbjct: 143 IT--VHEETPVTDV-DLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGVRQY 199
Query: 177 DSWPGKQ-MHSHNYRIPNPFQDQVVILIGHYA 207
D + + S+ +++ +PF+ +
Sbjct: 200 DEFYRNFAVWSY-FKLKDPFEGDLKGTTYSIT 230
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 49/191 (25%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS----------ETESDPLGV 54
V VIG G +GL+ EG V++ +KG ++ G + S + +
Sbjct: 29 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL-GRKLAISGGGRCNVTNRLPLDEIV-- 85
Query: 55 DPNRYPVHSS-LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEE--------- 104
P + LY + + +++ F + EE
Sbjct: 86 --KHIPGNGRFLYSAFSIFNNEDIITF-------------FENLGVKLKEEDHGRMFPVS 130
Query: 105 -----VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159
V+ L ++ GV +R +T V V + + + + VV
Sbjct: 131 NKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYENGQTKAVILQTGEVL----ETNHVV 184
Query: 160 VCNGHFSVPRL 170
+ G SVP+
Sbjct: 185 IAVGGKSVPQT 195
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
VIGAG GL+ L + GH V V+E+ GG
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGR 38
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 58/193 (30%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG----------V 54
V +IGAGAAG++ E + G V+V + G I S G
Sbjct: 30 VVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP-GEKIRIS-------GGGRCNFTNIHA 81
Query: 55 DPNRYPVHSS----LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEE------ 104
P + S +L P++ + V+ HE+
Sbjct: 82 SPRNF--LSGNPHFCKSALARYRPQDFVAL-------------VERHGIGWHEKTLGQLF 126
Query: 105 -------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157
++R L +E GV +RL T + ++ ++V + +
Sbjct: 127 CDHSAKDIIRMLMAEMKEAGVQ--LRLETSIGEVE-RTASGFRVTTSA-----GTVDAAS 178
Query: 158 VVVCNGHFSVPRL 170
+VV +G S+P++
Sbjct: 179 LVVASGGKSIPKM 191
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 5e-06
Identities = 62/423 (14%), Positives = 116/423 (27%), Gaps = 135/423 (31%)
Query: 21 LLREGHTVV--VYEKGEQVGGSWIYTS---------------ETESDPLGVDPNRYPVHS 63
LL + +V E+ ++ ++ + + D L D + ++
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 64 ----SLYKSLRVNLPREL----------M-GF----------QAYPFVARNYEGS--VDL 96
Y LR L EL + G +Y + ++L
Sbjct: 131 VSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 97 RRYPGHEEVLRYLQNFAREFGVDQV--------VRLHTEVLNARLVESNKWKVKSRKK-- 146
+ E VL LQ + + ++L + A L K K +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCL 247
Query: 147 ---DDVVEEETFDAVVVCNGHFSVP-------RLAQVPGIDSWPGKQMHSHNYRIPNPFQ 196
+V + ++A F++ R QV D
Sbjct: 248 LVLLNVQNAKAWNA-------FNLSCKILLTTRFKQV--TDFLSAATT------------ 286
Query: 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANED 256
I + H++ L + K + + + E P S++ + D
Sbjct: 287 --THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-----RRLSIIAESIRD 339
Query: 257 GTVVFRNGRVVSAD----VIMHC-TGLTGTSTTTLFLK----------PMALL--LW--- 296
G + N + V+ D +I L +F + P LL +W
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 297 -----MTIVLG-HCTSTFFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFCLVELCFL 350
M +V H S +Q + + L + N A L
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-NEYA-------------L 445
Query: 351 HKT 353
H++
Sbjct: 446 HRS 448
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 9e-06
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 1/114 (0%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
V ++G+G G EL+ G+ V +++ GE G I + + + +++ +
Sbjct: 49 VVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFV-NVI 107
Query: 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGV 118
+ + V++P + + ++ LR L A V
Sbjct: 108 QGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVV 161
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 135 ESNKWKVKSRKKDDVVEEETFDA--VVVC--NGHFSVPRLAQVPGIDSWPGKQMHSHNYR 190
E + +KV + + + A V++ G F PR PG + G+ ++ Y
Sbjct: 94 EGDLFKVTTSQG------NAYTAKAVIIAAGVGAF-EPRRIGAPGEREFEGRGVY---YA 143
Query: 191 IPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228
+ + FQ + V+++G S +D +L A+ + + R
Sbjct: 144 VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHR 183
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 1e-05
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEK-------GEQVGGSWIYTSETESDPLG 53
M + + ++GAG AGL +G L + V VY G ++ + + + T +
Sbjct: 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVA 80
Query: 54 VDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVAR--NYEGSVDLRRYPGH 102
+D N +P Y + G Q F +VD R Y
Sbjct: 81 LDVNEWPSEEFGYFGHYYYVG----GPQPMRFYGDLKAPSRAVDYRLYQPM 127
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
V V G G AG+ E R G V+V E+ GG+
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGA 79
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45
V V+GAG+AG + G V++ +K GG+ + ++
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISA 164
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
R V G G AGL L + G V ++EK ++
Sbjct: 12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELR 47
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721 | Back alignment and structure |
|---|
Score = 46.0 bits (107), Expect = 1e-05
Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 15/126 (11%)
Query: 4 HVAVIGAGAAGLVVGHELLR--------EGHTVVVYEKGEQVGGSWIYTSETESDPLGVD 55
+A++G GA G+ +EL R G V +YE +
Sbjct: 58 RIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKA 117
Query: 56 PNRYPVHSSLYKSLRVNLPREL--MGFQA-----YPFVARNYEGSVDLRRYPGHEEVLRY 108
+ E+ M F + + + + + ++ +P +V
Sbjct: 118 GRVSAALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYASAAFGDAAPIKVFPNPGKVPTE 177
Query: 109 LQNFAR 114
R
Sbjct: 178 FVFGNR 183
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP 51
V V+G G +G+ L G VVV E ++VGG YT +
Sbjct: 6 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR-TYTLRNQKVK 52
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33
++VA+IG G GL + L + G V VYE+
Sbjct: 27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYER 57
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
VIGAG GL L + G VYE +++
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK 59
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
VIGAG GL + L GH V+V E E +G
Sbjct: 7 CIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG 40
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33
+AV+G +GL L G V VYE+
Sbjct: 6 DRIAVVGGSISGLTAALMLRDAGVDVDVYER 36
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 5e-05
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34
+ V V+G+G GL L R+G++V + +
Sbjct: 7 KRVVVLGSGVIGLSSALILARKGYSVHILARD 38
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 28/173 (16%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGE-------QVGGSWIYTSETESDPLGVDPN 57
V +IG G AG ++L R G +++ + G + +
Sbjct: 9 VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGE 68
Query: 58 RYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVL-RYLQNFAREF 116
+ + + +++ P N EG L + + + A++
Sbjct: 69 --ELENKI-NGIKLYSPDM------QTVWTVNGEGFE-LNA-----PLYNQRVLKEAQDR 113
Query: 117 GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF--DAVVVCNGHFSV 167
GV+ + T + + E K EE T VV G+
Sbjct: 114 GVE--IWDLTTAMKP-IFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS 163
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
V +IG+G AGL G V++ EK GG+
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 164
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 41/184 (22%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP--LGVDPNRYPVH 62
VA+IGAG +GL++G L + G V+ E+ ++
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQTP--------DYVLGRIRAGVLEQG----- 51
Query: 63 SSLYKSLRV--------NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQ---- 110
+ + + R+ + + +DL+R G + V Y Q
Sbjct: 52 -----MVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVT 106
Query: 111 -----NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHF 165
V EV L + + V + ++D D + C+G
Sbjct: 107 RDLMEAREACGAT--TVYQAAEVRLHDL-QGERPYV-TFERDGERLRLDCDYIAGCDGFH 162
Query: 166 SVPR 169
+ R
Sbjct: 163 GISR 166
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 7e-05
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 5 VAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVGG-SWIY 43
+ ++GAG+ GL + L LR + + E G GG +W+
Sbjct: 82 IVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLG 123
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
V V+G+G AG G V++ EK +GG+
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 164
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 8e-05
Identities = 29/183 (15%), Positives = 46/183 (25%), Gaps = 58/183 (31%)
Query: 3 RHVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP 60
+HV VIGA A G R V + ++ S
Sbjct: 4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQAS-------RIS--------------- 41
Query: 61 VHSS----LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF 116
+ Y S V+ L V R+ E F
Sbjct: 42 -YGGCGIPYYVSGEVSNIESL--QATPYNVVRDPEF-------------------FRINK 79
Query: 117 GVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEEETFDAVVVCNGHFSVPRLAQVPG 175
V+ + T ++ V+ + +D +V+ G S V G
Sbjct: 80 DVE--ALVETRAHA---IDRAAHTVEIENLRTGERRTLKYDKLVLALG--SKANRPPVEG 132
Query: 176 IDS 178
+D
Sbjct: 133 MDL 135
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 1e-04
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 5 VAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGG 39
V V+GAG+AGL +E+ + V + E+ GG
Sbjct: 42 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG 77
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 1e-04
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
V +IG+G +GL +L G V + E ++VGG
Sbjct: 279 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 315
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
V VIG G GL +L G ++ E +++GG ++S + P + H
Sbjct: 41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR-SWSSNIDGYPYEMGGTWVHWHQ 99
Query: 64 SLYKSL--RVNLPRELMGFQAYPFVARNYEG--SVDLRRYPGHEEVLRYLQNFAREF 116
S R + L + +++ + Y HE L++ +F
Sbjct: 100 SHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKF 156
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 39/280 (13%), Positives = 81/280 (28%), Gaps = 31/280 (11%)
Query: 4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDP--LG---VDPN 57
V V+GAG +G+ L G +++ E + +GG ++ + LG V+
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR-MHKTNFAGINVELGANWVEGV 64
Query: 58 RYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG 117
+ ++ + L Y+ + ++ + L + E G
Sbjct: 65 NGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIE-LADSVEEMG 123
Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
LH + + + + + + + + F+ P
Sbjct: 124 EKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEP-------PR 176
Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
+ V Y + + LAG + S + D
Sbjct: 177 VTSLQNTVPLATFSDFGDDVYFVADQRGYEA---VVYYLAGQYLKTDDKSGKIVD----- 228
Query: 238 QPGYDNMWLHSMVERANEDG---TVVFRNGRVVSAD-VIM 273
+ L+ +V TV + V SAD V++
Sbjct: 229 ----PRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMV 264
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342 | Back alignment and structure |
|---|
Score = 42.4 bits (98), Expect = 1e-04
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 4 HVAVIGAGAAGLVVGHELLREGH---TVVVYEKGEQVGGSWIYTSETESDP 51
V ++GAG G + L R+ + V++K + GG + T+ + +P
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGG-RMTTACSPHNP 52
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 2e-04
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
V +IG+G +GL +L G V + E ++VGG
Sbjct: 108 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 5 VAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVGG 39
V ++GAG++GL + + R V + E GG
Sbjct: 68 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGE---QVGGSW 41
V V+G G GL ++ GH V+V E+ + GG+
Sbjct: 7 VVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTS 46
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 3e-04
Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 35/198 (17%)
Query: 5 VAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+ VIGAG AGLV +L R + + EK + E E GV P
Sbjct: 3 ILVIGAGPAGLVFASQLKQARPLWAIDIVEKND----------EQEVLGWGVVLPGRPGQ 52
Query: 63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRY-----LQNFAREFG 117
++ P L F ++ + V R L++ R G
Sbjct: 53 HPANPLSYLDAPERLNPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQG 112
Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
+ +R + +L + +D VV+ NG +
Sbjct: 113 IA--IRFESPLLE----------------HGELPLADYDLVVLANGVNHKTAHFTEALVP 154
Query: 178 SWPGKQMHSHNYRIPNPF 195
+ Y F
Sbjct: 155 QVDYGRNKYIWYGTSQLF 172
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ--VGGSW 41
V V+GAG+ G+ G++L ++G ++ + + GS
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSH 44
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
VIG G G + + L +E ++E G G +
Sbjct: 20 AVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRT 55
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 4e-04
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESD 50
+ V +IGAG AGL L + G +V E ++VGG + T
Sbjct: 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGR-LQTVTGYQG 56
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 34/284 (11%), Positives = 71/284 (25%), Gaps = 66/284 (23%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
V +IG AGL +L R +++ + GE+ + S
Sbjct: 5 VIIIGGSYAGLSAALQLGRARKNILLVDAGER-RNRFASHSH------------------ 45
Query: 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
G ++ ++ RY + +
Sbjct: 46 -------GFL----GQDGKA--------PGEIIA-EARRQIERY----------PTIHWV 75
Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQM 184
V +A+ + D ET +++ G L ++ G+ G +
Sbjct: 76 EGRVTDAKGSFGEF-----IVEIDGGRRETAGRLILAMG--VTDELPEIAGLRERWGSAV 128
Query: 185 HS----HNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR--SVADETHEKQ 238
H Y + +I + L + + + + H
Sbjct: 129 FHCPYCHGY----ELDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDADQHALL 184
Query: 239 PGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTS 282
+ + VV +GR ++ + L T
Sbjct: 185 AARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITV 228
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475 | Back alignment and structure |
|---|
Score = 40.7 bits (94), Expect = 6e-04
Identities = 12/74 (16%), Positives = 25/74 (33%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
V ++G G ++ L G ++V ++ GG + T P
Sbjct: 23 VIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYG 82
Query: 65 LYKSLRVNLPRELM 78
+ V+L + +
Sbjct: 83 ENRHWNVDLIPKFI 96
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 354 | |||
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 100.0 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 100.0 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 99.98 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 99.98 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 99.98 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 99.98 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 99.97 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 99.97 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 99.97 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 99.97 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 99.97 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 99.97 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.97 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 99.97 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 99.97 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 99.97 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 99.97 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 99.97 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 99.97 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 99.97 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 99.97 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 99.97 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 99.97 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 99.97 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.97 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 99.97 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 99.97 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 99.97 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 99.97 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 99.97 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 99.97 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 99.97 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 99.97 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 99.97 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 99.97 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 99.97 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 99.97 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 99.97 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 99.97 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.97 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 99.97 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 99.97 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 99.97 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 99.97 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 99.97 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.96 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.96 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 99.96 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 99.96 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.96 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.96 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 99.96 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 99.96 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 99.96 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 99.96 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.96 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 99.96 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 99.96 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 99.96 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 99.96 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 99.96 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 99.96 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.96 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 99.95 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 99.95 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.95 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.95 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.94 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 99.94 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 99.94 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.93 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 99.93 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.92 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.92 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.92 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.91 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.89 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.89 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.87 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.87 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.87 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.61 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.56 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.47 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 99.41 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.39 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.37 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 99.36 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 99.36 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 99.35 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 99.34 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.32 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 99.32 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 99.31 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 99.31 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 99.31 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 99.3 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 99.29 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 99.29 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 99.26 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 99.26 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.24 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 99.24 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 99.23 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 99.23 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 99.22 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 99.22 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 99.21 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 99.2 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 99.19 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 99.19 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 99.18 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 99.17 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 99.17 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.17 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.17 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 99.16 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 99.16 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 99.15 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 99.15 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 99.14 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 99.14 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 99.12 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 99.11 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 99.11 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 99.11 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.1 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 99.08 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 99.06 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 99.06 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 99.05 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 99.05 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 99.05 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 99.04 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 99.03 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 99.02 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.02 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 99.01 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 99.0 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 99.0 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.96 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.96 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.95 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.95 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.94 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.92 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 98.91 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.91 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.9 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.9 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 98.9 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.9 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 98.89 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.89 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.88 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.86 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 98.86 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.86 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.86 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.84 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 98.84 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.84 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.83 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 98.83 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.83 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.83 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 98.82 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.82 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.81 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.81 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.8 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.8 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.8 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.79 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.79 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.79 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.79 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.79 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 98.78 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.78 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.78 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.78 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.76 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.76 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.76 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 98.75 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 98.75 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.74 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.74 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 98.73 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.72 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 98.71 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 98.7 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.7 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.69 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 98.69 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.68 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 98.67 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.66 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.66 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 98.64 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 98.62 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.59 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.55 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.55 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 98.54 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 98.54 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 98.54 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 98.53 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.52 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.52 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.52 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 98.51 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.51 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.5 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.5 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.5 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 98.47 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.47 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.44 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.41 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.41 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 98.41 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.4 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.39 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.38 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.38 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.37 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.36 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.36 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.35 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.34 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.34 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.34 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 98.33 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.33 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 98.32 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.32 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 98.31 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 98.31 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.3 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.29 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 98.29 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 98.27 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.26 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 98.24 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.22 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 98.21 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 98.19 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 98.19 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 98.19 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 98.18 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 98.18 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 98.18 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 98.17 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 98.14 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 98.14 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 98.14 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.09 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 98.08 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 98.05 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 98.02 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 98.02 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 98.01 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 97.98 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.96 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 97.94 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.93 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 97.93 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.92 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.91 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.91 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.9 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 97.89 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 97.87 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 97.87 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 97.86 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.84 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 97.81 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.81 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.79 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 97.77 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.76 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.76 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.76 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 97.75 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 97.74 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 97.73 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 97.73 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.72 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 97.71 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 97.62 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.6 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 97.59 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 97.56 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 97.55 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 97.44 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 97.42 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 97.35 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 97.33 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 97.32 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 97.3 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 97.27 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 97.24 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.23 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 97.2 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 97.2 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 97.2 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 97.18 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 97.17 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 97.16 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 97.16 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 97.14 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 97.08 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.08 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 97.06 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 97.05 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 97.03 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 97.01 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 96.98 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 96.98 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 96.95 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 96.95 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.94 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.94 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.89 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 96.84 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 96.83 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 96.82 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 96.8 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.8 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 96.76 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.76 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.68 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.62 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.55 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 96.52 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 96.47 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 96.38 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 96.35 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 96.28 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 96.27 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 96.18 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.17 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.09 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.05 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 96.02 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.01 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 95.85 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 95.7 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 95.67 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.66 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 95.65 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 95.64 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 95.59 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.58 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 95.56 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 95.53 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.52 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.51 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 95.47 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 95.47 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 95.45 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 95.39 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 95.38 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.36 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 95.31 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 95.31 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.3 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 95.24 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 95.24 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 95.22 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 95.21 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 95.2 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 95.2 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 95.14 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 95.13 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.09 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.08 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.08 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.07 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 95.06 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 95.06 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 95.04 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.97 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 94.95 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 94.93 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.89 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 94.89 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 94.88 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 94.83 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 94.79 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 94.78 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 94.76 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 94.71 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 94.7 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 94.69 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 94.67 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 94.66 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.65 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 94.61 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 94.61 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 94.6 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.59 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 94.59 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 94.58 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 94.56 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 94.56 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 94.55 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.55 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 94.48 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 94.47 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 94.46 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 94.43 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 94.42 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 94.41 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 94.39 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 94.39 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 94.37 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 94.36 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 94.36 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 94.34 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.33 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 94.3 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 94.29 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 94.26 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 94.23 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 94.2 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 94.2 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 94.2 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 94.17 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 94.11 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 94.11 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 94.1 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 94.09 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 94.08 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 94.07 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 94.07 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 94.07 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 94.04 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 94.02 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 93.99 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 93.99 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 93.98 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 93.97 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 93.97 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 93.97 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 93.96 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 93.93 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 93.87 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 93.86 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 93.82 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 93.82 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 93.81 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 93.8 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 93.79 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 93.77 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 93.75 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 93.73 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 93.73 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 93.7 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 93.69 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 93.68 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 93.68 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 93.67 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 93.67 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 93.63 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 93.62 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 93.62 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 93.6 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 93.59 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 93.58 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 93.54 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 93.53 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 93.53 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 93.49 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 93.48 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 93.46 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 93.46 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 93.46 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 93.43 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 93.43 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 93.43 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 93.42 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 93.4 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 93.4 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 93.39 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 93.39 |
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=293.34 Aligned_cols=306 Identities=29% Similarity=0.495 Sum_probs=235.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHH---cCCc---EEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLR---EGHT---VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP 74 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~---~g~~---v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (354)
|.++|+|||||++|+++|..|++ .|++ |+|||+++.+||.|.+.... +|.+.....++..|..+..+.+
T Consensus 1 M~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~-----g~~~~g~~~~~~~y~~l~~~~~ 75 (464)
T 2xve_A 1 MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGP 75 (464)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCC-----SBCTTSSBCCCCCCTTCBCSSC
T ss_pred CCCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCC-----CccccCCCCcCccccchhhcCC
Confidence 67899999999999999999999 9999 99999998999999875332 3333333345667887888888
Q ss_pred cccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEEEEEeec-CCceEE
Q 018550 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKK-DDVVEE 152 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g-~~~~~~ 152 (354)
...+.+++++++... ..+...|+++..+.+|+.++++++++...++++++|++++..++ +.|+|++.++ .+...+
T Consensus 76 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~ 152 (464)
T 2xve_A 76 KECLEFADYTFDEHF---GKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYS 152 (464)
T ss_dssp GGGTCBTTBCHHHHH---SSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred hhhcccCCCCCCccc---CCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEE
Confidence 887777777654320 01235678889999999999999998766899999999998762 3799998774 222357
Q ss_pred EEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc
Q 018550 153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD 232 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~ 232 (354)
+.||+||+|||+++.|+.|.++|.+.+.+..+++..+++...+.+++|+|||+|.+|+|+|..|++.|++|+++++++..
T Consensus 153 ~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~ 232 (464)
T 2xve_A 153 EEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP 232 (464)
T ss_dssp EEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred EEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence 89999999999999999999999988888889998888777778999999999999999999999999999999987641
Q ss_pred cccccCCCCCCeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCc-hhh------------------
Q 018550 233 ETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKP-MAL------------------ 293 (354)
Q Consensus 233 ~~~~~l~~~~~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~-~~~------------------ 293 (354)
.. ..+. ..+.....|+++.+++ |++.||+++++|.||+|||++| +.++|.. .+.
T Consensus 233 ~~-~~~~--~~V~~~~~V~~i~~~~-V~~~dG~~i~~D~Vi~atG~~p---~~~~l~~~~gl~~~~~~~v~~~~~~~~~t 305 (464)
T 2xve_A 233 MG-YKWP--ENWDERPNLVRVDTEN-AYFADGSSEKVDAIILCTGYIH---HFPFLNDDLRLVTNNRLWPLNLYKGVVWE 305 (464)
T ss_dssp CC-CCCC--TTEEECSCEEEECSSE-EEETTSCEEECSEEEECCCBCC---CCTTBCTTTCCCCCSSSCCSSEETTTEES
T ss_pred CC-CCCC--CceEEcCCeEEEeCCE-EEECCCCEEeCCEEEECCCCCC---CCCCcCcccccccCCCcccccccceEecC
Confidence 10 0111 2444448899987665 9999999999999999999994 4444432 111
Q ss_pred hhceeeeecccchh-----hHHHHHHHhhhccC
Q 018550 294 LLWMTIVLGHCTST-----FFRQSWHQAFHLLG 321 (354)
Q Consensus 294 ~~~~i~a~GD~~~~-----~~~~~~~~~~~~~~ 321 (354)
...+||++||+... ...|+...+.++.|
T Consensus 306 ~~p~i~aiGd~~~~~~~~~a~~qa~~~a~~l~G 338 (464)
T 2xve_A 306 DNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMG 338 (464)
T ss_dssp SSTTEEECSCSCCSSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCcccccchHHHHHHHHHHHHHHcC
Confidence 01349999998862 23455555555544
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-36 Score=268.28 Aligned_cols=264 Identities=24% Similarity=0.399 Sum_probs=206.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||++|+++|..|+++|++|+|||+++.+||.|.+. |+.+....+.....++
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~---------------------~~~~~~~~~~~~~~~~ 61 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHA---------------------WHSLHLFSPAGWSSIP 61 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGS---------------------CTTCBCSSCGGGSCCS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCC---------------------CCCcEecCchhhhhCC
Confidence 3689999999999999999999999999999999999999862 2222233333333343
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEE-EEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~~d~vIl 160 (354)
.++.. .....|+.+.++.+++.+.+++++++ ++++++|++++..+ +.|. +++.++ ++.||+||+
T Consensus 62 ~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~~v~~~~g-----~~~~d~vV~ 126 (357)
T 4a9w_A 62 GWPMP-------ASQGPYPARAEVLAYLAQYEQKYALP--VLRPIRVQRVSHFG-ERLRVVARDGR-----QWLARAVIS 126 (357)
T ss_dssp SSCCC-------CCSSSSCBHHHHHHHHHHHHHHTTCC--EECSCCEEEEEEET-TEEEEEETTSC-----EEEEEEEEE
T ss_pred CCCCC-------CCccCCCCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEECC-CcEEEEEeCCC-----EEEeCEEEE
Confidence 43332 23456778899999999999999999 99999999999887 7788 776654 789999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---c-----
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---D----- 232 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---~----- 232 (354)
|||.++.|+.|.++|...+.+..++...+.+.....+++++|||+|.+|+|+|..|++.+ +|+++++++. .
T Consensus 127 AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~ 205 (357)
T 4a9w_A 127 ATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDG 205 (357)
T ss_dssp CCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCT
T ss_pred CCCCCCCCCCCCCCCccccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcC
Confidence 999888888999999988888888888888777778899999999999999999999998 5999998742 0
Q ss_pred -----cccccCC----------------------------CCCCeEEecceeEEecCCcEEEccCcEEecCEEEEcccCC
Q 018550 233 -----ETHEKQP----------------------------GYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 233 -----~~~~~l~----------------------------~~~~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~ 279 (354)
...+++. +.+.+.....+.++..++ +++.+|+++++|+||+|+|++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~v~~~~~~~-v~~~~g~~i~~D~vi~a~G~~ 284 (357)
T 4a9w_A 206 RVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTG-MQWADGTERAFDAVIWCTGFR 284 (357)
T ss_dssp HHHHTC----------------------CBCCCHHHHHHHHTTCCCEECCCSEEETTE-EECTTSCEEECSEEEECCCBC
T ss_pred ccHHHHHHHHHhccccccCCCcccccccCcccChhHHHHHhcCceEEecCcceEeCCe-eEECCCCEecCCEEEECCCcC
Confidence 0111121 223456667777777766 999999999999999999999
Q ss_pred CccCcccccCchhhh-----------------hceeeeec--ccch
Q 018550 280 GTSTTTLFLKPMALL-----------------LWMTIVLG--HCTS 306 (354)
Q Consensus 280 ~~~p~~~~l~~~~~~-----------------~~~i~a~G--D~~~ 306 (354)
|++++++..+.. ..+|||+| ||..
T Consensus 285 ---p~~~~l~~~gl~~~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~ 327 (357)
T 4a9w_A 285 ---PALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGDWNG 327 (357)
T ss_dssp ---CCCGGGTTTTCBCTTSCBCBCTTSCBBSSCTTEEECSSCGGGS
T ss_pred ---CCCcccCcccccCCCCCccccCCcccCCCCCCeEEeccccccc
Confidence 777777653321 23499999 5553
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=272.42 Aligned_cols=299 Identities=28% Similarity=0.470 Sum_probs=224.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCCCccceeecCCCCCCCCCCCCCC-------C--------Cccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPN-------R--------YPVHSS 64 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~-------~--------~~~~~~ 64 (354)
.++|+|||||++|+++|..|++.|. +|+|||+.+.+||.|.+....... ...|. . ....+.
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~--~~ip~~~~~~~~~~~~~g~~~~~~~~~ 83 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNK--LPVPSTNPILTTEPIVGPAALPVYPSP 83 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSC--CCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcc--cccccccccccccccccccccCCccCc
Confidence 4799999999999999999999999 999999998999999875432100 00010 0 011244
Q ss_pred ccccchhccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEe
Q 018550 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR 144 (354)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~ 144 (354)
.|..+..+.+...+.+.++++.. ....|+.+..+.+|+.+++++++.. ++++++|++++..+ +.|.|++.
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~--i~~~t~V~~v~~~~-~~~~V~~~ 153 (447)
T 2gv8_A 84 LYRDLQTNTPIELMGYCDQSFKP-------QTLQFPHRHTIQEYQRIYAQPLLPF--IKLATDVLDIEKKD-GSWVVTYK 153 (447)
T ss_dssp CCTTCBCSSCHHHHSCTTCCCCT-------TCCSSCBHHHHHHHHHHHHGGGGGG--EECSEEEEEEEEET-TEEEEEEE
T ss_pred hhhhhccCCCHHHhccCCCCCCC-------CCCCCCCHHHHHHHHHHHHHHhhCe--EEeCCEEEEEEeCC-CeEEEEEe
Confidence 56666666666666666666543 2456788899999999999888766 89999999999876 78999987
Q ss_pred ec-CCc-eEEEEeCEEEEeeCCCCCcccCCCCCCCCC----CcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhc
Q 018550 145 KK-DDV-VEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAG 218 (354)
Q Consensus 145 ~g-~~~-~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~ 218 (354)
+. ++. ..++.||+||+|||+++.|+.|.++|.+.+ .+.++++..+++...+.+++|+|||+|.+|+|+|..|++
T Consensus 154 ~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~ 233 (447)
T 2gv8_A 154 GTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTP 233 (447)
T ss_dssp ESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTT
T ss_pred ecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHH
Confidence 62 121 247899999999998889999999997653 566788888887777789999999999999999999999
Q ss_pred cCCE-EEEEEecCCccccccCCCCCCeEEecceeEEecC-CcEEEccCcE-EecCEEEEcccCCCccCcccc-----cCc
Q 018550 219 FAKE-VHIASRSVADETHEKQPGYDNMWLHSMVERANED-GTVVFRNGRV-VSADVIMHCTGLTGTSTTTLF-----LKP 290 (354)
Q Consensus 219 ~g~~-v~~~~r~~~~~~~~~l~~~~~~~~~~~v~~v~~~-~~v~~~~g~~-~~~D~vi~a~G~~~~~p~~~~-----l~~ 290 (354)
.+++ |++++|++.. + ....+.....|+++..+ ..|++.||+. +++|.||+|||++ |+++| ++.
T Consensus 234 ~~~~~V~l~~r~~~~-----l-~~~~i~~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~---~~~~~l~~~~l~~ 304 (447)
T 2gv8_A 234 VAKHPIYQSLLGGGD-----I-QNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYL---YSVPFPSLAKLKS 304 (447)
T ss_dssp TSCSSEEEECTTCCS-----C-BCSSEEEECCEEEEETTTTEEEETTTEEECCCSEEEECCCBC---CCCCCHHHHSCCS
T ss_pred HhCCcEEEEeCCCCc-----C-CCCCeEEecCeEEEecCCCEEEECCCCEeccCCEEEECCCCC---cCCCCCccccccc
Confidence 9999 9999998632 2 23356678899999643 3499999976 7899999999999 55555 443
Q ss_pred h--hh-----------------hhceeeeecccchh-----hHHHHHHHhhhccC
Q 018550 291 M--AL-----------------LLWMTIVLGHCTST-----FFRQSWHQAFHLLG 321 (354)
Q Consensus 291 ~--~~-----------------~~~~i~a~GD~~~~-----~~~~~~~~~~~~~~ 321 (354)
. .. ....+|++||+... ...|+...|.++.|
T Consensus 305 ~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~~~~~a~~qa~~~a~~~~g 359 (447)
T 2gv8_A 305 PETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSG 359 (447)
T ss_dssp TTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCHHHHHHHHHHHHHHHHTT
T ss_pred ccCceecCCCcccccccccccCCCCcEEEEeccccccCchHHHHHHHHHHHHHcC
Confidence 2 00 12338999998763 23456666666644
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=263.87 Aligned_cols=202 Identities=24% Similarity=0.409 Sum_probs=162.5
Q ss_pred CeEEEEcCChHHHHHHHHHH-HcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELL-REGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~-~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++|+|||||++|+++|..|+ +.|++|+|||+++.+||+|..+ .|+.+....+...+.+.
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~--------------------~ypg~~~d~~s~~~~~~ 68 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWN--------------------RYPGALSDTESHLYRFS 68 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHC--------------------CCTTCEEEEEGGGSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCccccc--------------------CCCCceecCCcceeeec
Confidence 68999999999999999999 9999999999999999999864 12222222222222211
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEEEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
+.........+...|+...++.+|+.+.++++++..+++++++|++++++++ +.|+|++.+|. ++.||+||+
T Consensus 69 ---~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~----~i~ad~lV~ 141 (540)
T 3gwf_A 69 ---FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGE----VYRAKYVVN 141 (540)
T ss_dssp ---SCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSC----EEEEEEEEE
T ss_pred ---cccccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCC----EEEeCEEEE
Confidence 1000000012334566779999999999999999555999999999998763 48999998775 799999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
|||.++.|+.|+++|.+.+.+..+++..+.......+++|+|||+|.+|+|+|..|++.+++|+++.|++.
T Consensus 142 AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 212 (540)
T 3gwf_A 142 AVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ 212 (540)
T ss_dssp CCCSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred CCcccccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 99998899999999999998999999888877777899999999999999999999999999999999875
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=249.42 Aligned_cols=246 Identities=21% Similarity=0.239 Sum_probs=190.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||++|+++|..|++.|++|+|||++ +||.|...+.. ..++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~------------------------------~~~~ 62 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIV------------------------------DDYL 62 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEE------------------------------CCST
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccc------------------------------cccC
Confidence 479999999999999999999999999999997 88888762110 0011
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.++. ....++.+++.+.+.+++++ +++ .+|++++.++ +.|.+.+.++. ++.||+||+|
T Consensus 63 ~~~~--------------~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~-~~~~v~~~~g~----~~~~d~lvlA 120 (323)
T 3f8d_A 63 GLIE--------------IQASDMIKVFNKHIEKYEVP--VLL-DIVEKIENRG-DEFVVKTKRKG----EFKADSVILG 120 (323)
T ss_dssp TSTT--------------EEHHHHHHHHHHHHHTTTCC--EEE-SCEEEEEEC---CEEEEESSSC----EEEEEEEEEC
T ss_pred CCCC--------------CCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEecC-CEEEEEECCCC----EEEcCEEEEC
Confidence 1111 12378899999999999998 777 8999999876 78889887764 8999999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----cccccc
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK 237 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~~ 237 (354)
|| +.++.|.++|...+.+..++.....+.....+++++|||+|.+|+|+|..|.+.+.+|+++++.+. +...++
T Consensus 121 tG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~ 198 (323)
T 3f8d_A 121 IG--VKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVET 198 (323)
T ss_dssp CC--CEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHH
T ss_pred cC--CCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHH
Confidence 99 678889999988765555555444444455789999999999999999999999999999999875 223333
Q ss_pred CC-CCC-CeEEecceeEEecCCc---EEEcc---Cc--EEecCEEEEcccCCCccCcccccCchhhh-------------
Q 018550 238 QP-GYD-NMWLHSMVERANEDGT---VVFRN---GR--VVSADVIMHCTGLTGTSTTTLFLKPMALL------------- 294 (354)
Q Consensus 238 l~-~~~-~~~~~~~v~~v~~~~~---v~~~~---g~--~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------------- 294 (354)
+. +.+ +++.++.|+++..++. |++.+ |+ ++++|.|++|+|+. |++++++..+..
T Consensus 199 ~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~---p~~~~~~~~g~~~~~~g~i~vd~~~ 275 (323)
T 3f8d_A 199 VKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFD---PPTDFAKSNGIETDTNGYIKVDEWM 275 (323)
T ss_dssp HHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEE---CCHHHHHHTTCCBCTTSSBCCCTTC
T ss_pred HHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCC---CChhHHhhcCeeecCCCcEecCCCc
Confidence 43 334 8888899999987653 66766 65 78999999999999 776676544322
Q ss_pred ---hceeeeecccch
Q 018550 295 ---LWMTIVLGHCTS 306 (354)
Q Consensus 295 ---~~~i~a~GD~~~ 306 (354)
..+|||+|||+.
T Consensus 276 ~t~~~~vya~GD~~~ 290 (323)
T 3f8d_A 276 RTSVPGVFAAGDCTS 290 (323)
T ss_dssp BCSSTTEEECSTTBS
T ss_pred eecCCCEEEcceecC
Confidence 245999999987
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=252.41 Aligned_cols=251 Identities=18% Similarity=0.232 Sum_probs=193.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||++|+++|..|++.|++|+|||+.+.+||.|... |+. .....++.
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~---------------------~~~------~~~~~~~~ 60 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSAL---------------------YPE------KYIYDVAG 60 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHH---------------------CTT------SEECCSTT
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhc---------------------CCC------ceEeccCC
Confidence 689999999999999999999999999999999999998641 000 00001111
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
++. ....++..++.+.+.+++++ ++++++|++++..+++.|.+.+.++ ++.||+||+||
T Consensus 61 ~~~--------------~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~v~~~~g-----~~~~d~vVlAt 119 (332)
T 3lzw_A 61 FPK--------------IRAQELINNLKEQMAKFDQT--ICLEQAVESVEKQADGVFKLVTNEE-----THYSKTVIITA 119 (332)
T ss_dssp CSS--------------EEHHHHHHHHHHHHTTSCCE--EECSCCEEEEEECTTSCEEEEESSE-----EEEEEEEEECC
T ss_pred CCC--------------CCHHHHHHHHHHHHHHhCCc--EEccCEEEEEEECCCCcEEEEECCC-----EEEeCEEEECC
Confidence 111 12388999999999888888 8999999999987634899988775 58999999999
Q ss_pred CCCC-CcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----cccccc
Q 018550 163 GHFS-VPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK 237 (354)
Q Consensus 163 G~~s-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~~ 237 (354)
|..+ .|+.|.++|...+.+..++. .+.+.....+++++|||+|.+|+|+|..|++.+.+|+++++.+. +...++
T Consensus 120 G~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~ 198 (332)
T 3lzw_A 120 GNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVEN 198 (332)
T ss_dssp TTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHH
T ss_pred CCCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHH
Confidence 9432 78888999988766555655 55555555789999999999999999999999999999999875 222333
Q ss_pred CCCCC-CeEEecceeEEecCCc---EEEcc-----CcEEecCEEEEcccCCCccCcccccCchhhh--------------
Q 018550 238 QPGYD-NMWLHSMVERANEDGT---VVFRN-----GRVVSADVIMHCTGLTGTSTTTLFLKPMALL-------------- 294 (354)
Q Consensus 238 l~~~~-~~~~~~~v~~v~~~~~---v~~~~-----g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~-------------- 294 (354)
+.+.+ +++.++.++++..++. |++.+ ++++++|.|++|+|+. |+.+++...+..
T Consensus 199 l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~---p~~~~~~~~~~~~~~g~i~vd~~~~t 275 (332)
T 3lzw_A 199 LHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFV---SSLGPIKNWGLDIEKNSIVVKSTMET 275 (332)
T ss_dssp HHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEE---CCCGGGGGSSCCEETTEEECCTTSBC
T ss_pred HhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccC---CCchHHhhcCccccCCeEEeCCCCce
Confidence 44444 8888899999986543 77766 3678999999999999 777776554322
Q ss_pred -hceeeeecccc
Q 018550 295 -LWMTIVLGHCT 305 (354)
Q Consensus 295 -~~~i~a~GD~~ 305 (354)
..+|||+|||+
T Consensus 276 ~~~~vya~GD~~ 287 (332)
T 3lzw_A 276 NIEGFFAAGDIC 287 (332)
T ss_dssp SSTTEEECGGGE
T ss_pred ecCCEEEcccee
Confidence 24599999997
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=248.84 Aligned_cols=267 Identities=18% Similarity=0.221 Sum_probs=193.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||++|+++|..|++.|++|+|||+++.+||.|... .|.+. .+...
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~----------~~~~~-----------------~~~~~ 57 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTAL----------YPEKY-----------------IYDVA 57 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHT----------CTTSE-----------------ECCST
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeecc----------CCCce-----------------eeccC
Confidence 3689999999999999999999999999999998899888652 00000 00011
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.++. ....++.+++.+.+.+++++ ++++++|++++.++ +.|.+.+.++. ++.||+||+|
T Consensus 58 ~~~~--------------~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~~~g~----~~~~~~lv~A 116 (335)
T 2zbw_A 58 GFPK--------------VYAKDLVKGLVEQVAPFNPV--YSLGERAETLEREG-DLFKVTTSQGN----AYTAKAVIIA 116 (335)
T ss_dssp TCSS--------------EEHHHHHHHHHHHHGGGCCE--EEESCCEEEEEEET-TEEEEEETTSC----EEEEEEEEEC
T ss_pred CCCC--------------CCHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEECC-CEEEEEECCCC----EEEeCEEEEC
Confidence 1111 12377888888888888887 88899999999876 57888876654 7899999999
Q ss_pred eCCCC-CcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--------c
Q 018550 162 NGHFS-VPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--------D 232 (354)
Q Consensus 162 tG~~s-~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--------~ 232 (354)
||..+ .|+.|+++|...+.+..++.. +.+.....+++++|||+|.+|+|+|..|++.+.+|+++.+++. +
T Consensus 117 tG~~~~~p~~~~i~g~~~~~~~~~~~~-~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~ 195 (335)
T 2zbw_A 117 AGVGAFEPRRIGAPGEREFEGRGVYYA-VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVK 195 (335)
T ss_dssp CTTSEEEECCCCCTTTTTTBTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHH
T ss_pred CCCCCCCCCCCCCCChhhccCcEEEEe-cCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHH
Confidence 99432 577778888766544333322 2233344689999999999999999999999999999999874 1
Q ss_pred cccccCCCCC-CeEEecceeEEecCCc---EEEc---cC--cEEecCEEEEcccCCCccCcccccCchhhh---------
Q 018550 233 ETHEKQPGYD-NMWLHSMVERANEDGT---VVFR---NG--RVVSADVIMHCTGLTGTSTTTLFLKPMALL--------- 294 (354)
Q Consensus 233 ~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~---~g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~--------- 294 (354)
...+.+++.+ +++.++.|+++..++. |+++ +| +++++|.||+|+|++ |+++++...+..
T Consensus 196 ~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~---p~~~~l~~~~~~~~~g~i~vd 272 (335)
T 2zbw_A 196 ELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYI---TKLGPLANWGLALEKNKIKVD 272 (335)
T ss_dssp HHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEE---EECGGGGGSCCCEETTEEECC
T ss_pred HHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCC---CCchHhhhcceeccCCeeeeC
Confidence 1222233334 8888889999986543 6666 67 578999999999999 776666543321
Q ss_pred ------hceeeeecccchh---------hHHHHHHHhhhcc
Q 018550 295 ------LWMTIVLGHCTST---------FFRQSWHQAFHLL 320 (354)
Q Consensus 295 ------~~~i~a~GD~~~~---------~~~~~~~~~~~~~ 320 (354)
..+|||+|||+.. ...|+...+.++.
T Consensus 273 ~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~ 313 (335)
T 2zbw_A 273 TTMATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAA 313 (335)
T ss_dssp TTCBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHH
Confidence 2459999999841 2345555555553
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=245.40 Aligned_cols=244 Identities=14% Similarity=0.181 Sum_probs=184.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
|+++|+|||||++|+++|..|++.|++|+|||+++..+..+... ..+
T Consensus 1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~---------------------------------~~~ 47 (297)
T 3fbs_A 1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHS---------------------------------HGF 47 (297)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCC---------------------------------CSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhh---------------------------------cCC
Confidence 77899999999999999999999999999999965332211110 001
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
... ......++.+++.+.+.++ ++. +. +.+|++++.++ +.|.+.+.++. ++.||+||
T Consensus 48 ~~~--------------~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~v~~i~~~~-~~~~v~~~~g~----~~~~d~vv 105 (297)
T 3fbs_A 48 LGQ--------------DGKAPGEIIAEARRQIERYPTIH--WV-EGRVTDAKGSF-GEFIVEIDGGR----RETAGRLI 105 (297)
T ss_dssp TTC--------------TTCCHHHHHHHHHHHHTTCTTEE--EE-ESCEEEEEEET-TEEEEEETTSC----EEEEEEEE
T ss_pred cCC--------------CCCCHHHHHHHHHHHHHhcCCeE--EE-EeEEEEEEEcC-CeEEEEECCCC----EEEcCEEE
Confidence 111 1223378888998888876 444 43 56999999887 77999988764 79999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---ccccc
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---DETHE 236 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---~~~~~ 236 (354)
+||| +.|+.|.++|...+.+...+...+.+.....+++++|||+|++|+|+|..|++.| +|+++.+.+. +...+
T Consensus 106 iAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~~~~~~~~ 182 (297)
T 3fbs_A 106 LAMG--VTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVEPDADQHA 182 (297)
T ss_dssp ECCC--CEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCCCCHHHHH
T ss_pred ECCC--CCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCCCCHHHHH
Confidence 9999 7888899999877655555554444444557899999999999999999999998 9999998764 22233
Q ss_pred cCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCchhhh-------------------hc
Q 018550 237 KQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL-------------------LW 296 (354)
Q Consensus 237 ~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~-------------------~~ 296 (354)
.+.+.+ +++ .+.|+++..++.|++.+|+++++|.|++|+|+. |+.++++..+.. ..
T Consensus 183 ~l~~~gv~i~-~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~---p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~ 258 (297)
T 3fbs_A 183 LLAARGVRVE-TTRIREIAGHADVVLADGRSIALAGLFTQPKLR---ITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTAR 258 (297)
T ss_dssp HHHHTTCEEE-CSCEEEEETTEEEEETTSCEEEESEEEECCEEE---CCCSCHHHHTCCEEEETTEEEECCCTTCBCSST
T ss_pred HHHHCCcEEE-cceeeeeecCCeEEeCCCCEEEEEEEEEccCcc---cCchhHHhcCCccccCCCCceEEeCCCCccCCC
Confidence 344444 666 489999987645999999999999999999999 666665543221 13
Q ss_pred eeeeecccch
Q 018550 297 MTIVLGHCTS 306 (354)
Q Consensus 297 ~i~a~GD~~~ 306 (354)
+|||+|||+.
T Consensus 259 ~vya~GD~~~ 268 (297)
T 3fbs_A 259 GIFACGDVAR 268 (297)
T ss_dssp TEEECSGGGC
T ss_pred CEEEEeecCC
Confidence 5999999998
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=258.59 Aligned_cols=203 Identities=28% Similarity=0.422 Sum_probs=159.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+++|..|++.|++|+|||+++.+||+|..+ +.| ......+...+.+.
T Consensus 9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~---------~yP-----------g~~~d~~~~~y~~~ 68 (545)
T 3uox_A 9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWN---------RYP-----------GCRLDTESYAYGYF 68 (545)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC---------CCT-----------TCBCSSCHHHHCHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC---------CCC-----------ceeecCchhhcccc
Confidence 3689999999999999999999999999999999999999763 122 12222222222211
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEEEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
-.+ .......+...|+...++.+|+.+.++++++..+++++++|++++++++ +.|+|++.+|. ++.||+||+
T Consensus 69 f~~---~~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~----~~~ad~lV~ 141 (545)
T 3uox_A 69 ALK---GIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEE----VVTCRFLIS 141 (545)
T ss_dssp HHT---TSSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTE----EEEEEEEEE
T ss_pred cCc---ccccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCC----EEEeCEEEE
Confidence 000 0000112445677889999999999999998655999999999998753 57999988764 899999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
|||.++.|+.|+++|.+.+.+..+++..+... ....+++|+|||+|.+|+|+|..|++.+++|+++.|++.
T Consensus 142 AtG~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~ 219 (545)
T 3uox_A 142 ATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN 219 (545)
T ss_dssp CCCSCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred CcCCCCCCcCCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence 99998899999999999988888998877665 566889999999999999999999999999999999874
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=258.79 Aligned_cols=203 Identities=27% Similarity=0.424 Sum_probs=162.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+++|..|++.|++|+|||+++.+||+|..+. |+.+....+...+.+.
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~--------------------ypg~~~dv~s~~y~~~ 80 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNR--------------------YPGARCDVESIDYSYS 80 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC--------------------CTTCBCSSCTTTSSCC
T ss_pred CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCC--------------------CCCceeCCCchhcccc
Confidence 36899999999999999999999999999999999999998641 1112122222221111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEEEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
+.........+...|+...++.+|+.+.++++++..+++++++|++++++++ +.|+|++.+|. ++.||+||+
T Consensus 81 ---f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~----~i~ad~lV~ 153 (549)
T 4ap3_A 81 ---FSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGD----EVSARFLVV 153 (549)
T ss_dssp ---SCHHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCC----EEEEEEEEE
T ss_pred ---cccccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCC----EEEeCEEEE
Confidence 1000000012344677889999999999999998555999999999998763 47999988775 799999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCC-CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
|||.++.|+.|+++|.+.+.+..+++..+. +.....+++|+|||+|.+|+|+|..|++.+++|+++.|++.
T Consensus 154 AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 225 (549)
T 4ap3_A 154 AAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN 225 (549)
T ss_dssp CCCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CcCCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 999888999999999999988999988887 56667899999999999999999999999999999999874
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=240.72 Aligned_cols=248 Identities=23% Similarity=0.295 Sum_probs=185.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||++|+++|..|++.|++|+|||++ .+||.|....... .++.
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~------------------------------~~~~ 57 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEVE------------------------------NFPG 57 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCBC------------------------------CSTT
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccccc------------------------------cCCC
Confidence 68999999999999999999999999999997 7888887631100 0001
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe--CCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV--ESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~--~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
++. ...+.++.+++.+.+.+++++ ++. .+|.+++.. ++..|.+.+.++. ++.||+||+
T Consensus 58 ~~~-------------~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~i~~~~~~~~~~~v~~~~g~----~~~~~~vv~ 117 (325)
T 2q7v_A 58 FPE-------------PIAGMELAQRMHQQAEKFGAK--VEM-DEVQGVQHDATSHPYPFTVRGYNG----EYRAKAVIL 117 (325)
T ss_dssp CSS-------------CBCHHHHHHHHHHHHHHTTCE--EEE-CCEEEEEECTTSSSCCEEEEESSC----EEEEEEEEE
T ss_pred CCC-------------CCCHHHHHHHHHHHHHHcCCE--EEe-eeEEEEEeccCCCceEEEEECCCC----EEEeCEEEE
Confidence 110 123478889999999999988 766 689999886 4122788777664 899999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----ccccc
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHE 236 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~ 236 (354)
||| +.++.|.++|...+.+..++...+.+.....+++++|||+|.+|+|+|..|++.+.+|+++++++. +...+
T Consensus 118 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~ 195 (325)
T 2q7v_A 118 ATG--ADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQA 195 (325)
T ss_dssp CCC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHH
T ss_pred CcC--CCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHH
Confidence 999 778888898887654444544333333344679999999999999999999999999999999864 22233
Q ss_pred cCC-CCC-CeEEecceeEEecCCc---EEEc---cCc--EEecCEEEEcccCCCccCcccccCchhh-------------
Q 018550 237 KQP-GYD-NMWLHSMVERANEDGT---VVFR---NGR--VVSADVIMHCTGLTGTSTTTLFLKPMAL------------- 293 (354)
Q Consensus 237 ~l~-~~~-~~~~~~~v~~v~~~~~---v~~~---~g~--~~~~D~vi~a~G~~~~~p~~~~l~~~~~------------- 293 (354)
++. ..+ +++.++.++++..++. |+++ +|+ ++++|.||+|+|++ |+++++.....
T Consensus 196 ~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~---p~~~~l~~~~~~~~~g~i~vd~~~ 272 (325)
T 2q7v_A 196 RAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHV---PNTAFVKDTVSLRDDGYVDVRDEI 272 (325)
T ss_dssp HHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEE---ESCGGGTTTSCBCTTSCBCCBTTT
T ss_pred HHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCC---CChHHHhhhcccCCCccEecCCCC
Confidence 343 334 8888999999987642 6665 564 78999999999999 77777654310
Q ss_pred --hhceeeeecccch
Q 018550 294 --LLWMTIVLGHCTS 306 (354)
Q Consensus 294 --~~~~i~a~GD~~~ 306 (354)
...+|||+|||+.
T Consensus 273 ~t~~~~vya~GD~~~ 287 (325)
T 2q7v_A 273 YTNIPMLFAAGDVSD 287 (325)
T ss_dssp BCSSTTEEECSTTTC
T ss_pred ccCCCCEEEeecccC
Confidence 1235999999986
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=263.00 Aligned_cols=309 Identities=13% Similarity=0.104 Sum_probs=199.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC--------CCccceeecCCCCCCCCCCCCCCCCccccccccc-chhcc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG--------EQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS-LRVNL 73 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~--------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 73 (354)
|||+|||+||+|+.+|..++++|.+|.|||+. ..+||+|.+ +||+|.|.++.+..... +....
T Consensus 43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln--------~GCIPsK~L~~aa~~~~~~~~~~ 114 (542)
T 4b1b_A 43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVN--------VGCVPKKLMHYAGHMGSIFKLDS 114 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHH--------HSHHHHHHHHHHHHHHHHHHHTG
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccc--------cchHHHHHHHHHHHHHHHHHhhh
Confidence 79999999999999999999999999999964 348999998 49999987776543322 22222
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHH-----------HHHHhCCcceEEeceEEEEEEEeCCCcEEEE
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----------FAREFGVDQVVRLHTEVLNARLVESNKWKVK 142 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~ 142 (354)
......+.... .++..+.++.+. .+++.+++ +.. ....-+. . +...+.
T Consensus 115 ~~~Gi~~~~~~---------------~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~--~i~-G~a~f~~--~-~~v~V~ 173 (542)
T 4b1b_A 115 KAYGWKFDNLK---------------HDWKKLVTTVQSHIRSLNFSYMTGLRSSKVK--YIN-GLAKLKD--K-NTVSYY 173 (542)
T ss_dssp GGGTEEEEEEE---------------ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEC-EEEEEEE--T-TEEEEE
T ss_pred HhcCcccCccc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEe-eeEEEcC--C-CcceEe
Confidence 11111111100 012333333332 23344665 433 2222221 2 444454
Q ss_pred EeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCE
Q 018550 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (354)
Q Consensus 143 ~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~ 222 (354)
..+..+..+.+.++++|+||| ++|+.|+..+... ...+++....... ..|++++|||||++|+|+|..+++.|.+
T Consensus 174 ~~~~~~~~~~i~a~~iiIATG--s~P~~P~~~~~~~--~~~~ts~~~l~l~-~lP~~lvIIGgG~IGlE~A~~~~~lG~~ 248 (542)
T 4b1b_A 174 LKGDLSKEETVTGKYILIATG--CRPHIPDDVEGAK--ELSITSDDIFSLK-KDPGKTLVVGASYVALECSGFLNSLGYD 248 (542)
T ss_dssp EC--CCCEEEEEEEEEEECCC--EEECCCSSSBTHH--HHCBCHHHHTTCS-SCCCSEEEECCSHHHHHHHHHHHHHTCC
T ss_pred ecccCCceEEEeeeeEEeccC--CCCCCCCcccCCC--ccccCchhhhccc-cCCceEEEECCCHHHHHHHHHHHhcCCe
Confidence 443333456899999999999 8999886443321 1223333333322 3579999999999999999999999999
Q ss_pred EEEEEecCC----c-----cccccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCCccCcccccC
Q 018550 223 VHIASRSVA----D-----ETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLK 289 (354)
Q Consensus 223 v~~~~r~~~----~-----~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~ 289 (354)
||++.++.. + ...+.|++.+ +++.+..++.+...+. |.+.++.++.+|.|++|+|++ ||++.|.
T Consensus 249 VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~---Pnt~~L~ 325 (542)
T 4b1b_A 249 VTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRK---GDIDGLN 325 (542)
T ss_dssp EEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE---ESCGGGC
T ss_pred EEEecccccccccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEccccc---CCccccC
Confidence 999987553 1 1223344455 8889999999875443 666788889999999999999 8887764
Q ss_pred chhh--h-----------------hceeeeecccchh-------hHHHHHHHhhhccCCCcccccCCCCCccccCCchhh
Q 018550 290 PMAL--L-----------------LWMTIVLGHCTST-------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASGLPVFC 343 (354)
Q Consensus 290 ~~~~--~-----------------~~~i~a~GD~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (354)
-... . ..+|||+|||+.. ...+....+.++.+..... ...+.++..++|
T Consensus 326 le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~~~~-----~d~~~iP~~vft 400 (542)
T 4b1b_A 326 LESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDSDEI-----MDYSYIPTSIYT 400 (542)
T ss_dssp GGGTTCCEETTTTEECCCTTSBCSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSCCCCC-----CCCSSCCEEECS
T ss_pred cccceeeecccCceEeccccccccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcCCCcc-----cCCCCCceEEeC
Confidence 2211 1 1239999999853 2355666677776655431 222334445777
Q ss_pred hhhhhhhccc
Q 018550 344 LVELCFLHKT 353 (354)
Q Consensus 344 ~~~~~~~~~~ 353 (354)
.||+...+.|
T Consensus 401 ~PeiA~VGlT 410 (542)
T 4b1b_A 401 PIEYGACGYS 410 (542)
T ss_dssp SSCEEEEECC
T ss_pred CCCeEEEeCC
Confidence 7777766654
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=244.88 Aligned_cols=268 Identities=20% Similarity=0.260 Sum_probs=193.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||++|+++|..|++.|++|+|||+.+.+||.|.... |.. ..+..+
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~----------~~~-----------------~~~~~~ 66 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALY----------PEK-----------------HIYDVA 66 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTC----------TTS-----------------EECCST
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccC----------CCc-----------------ccccCC
Confidence 36899999999999999999999999999999988998886420 000 000011
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.++. ....++.+++.+.+.+++++ ++++++|++++..+++.|.+.+.++. ++.||+||+|
T Consensus 67 ~~~~--------------~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~v~~~~g~----~~~~~~li~A 126 (360)
T 3ab1_A 67 GFPE--------------VPAIDLVESLWAQAERYNPD--VVLNETVTKYTKLDDGTFETRTNTGN----VYRSRAVLIA 126 (360)
T ss_dssp TCSS--------------EEHHHHHHHHHHHHHTTCCE--EECSCCEEEEEECTTSCEEEEETTSC----EEEEEEEEEC
T ss_pred CCCC--------------CCHHHHHHHHHHHHHHhCCE--EEcCCEEEEEEECCCceEEEEECCCc----EEEeeEEEEc
Confidence 1111 12377888888888888887 88999999999876347888887664 7999999999
Q ss_pred eCCCC-CcccCCCCC-CCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----cccc
Q 018550 162 NGHFS-VPRLAQVPG-IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH 235 (354)
Q Consensus 162 tG~~s-~~~~p~~~g-~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~ 235 (354)
||..+ .|+.|.++| .+.+.+..++.. +.+.....+++++|||+|.+|+|+|..|++.+.+|+++++++. +...
T Consensus 127 tG~~~~~~~~~~i~g~~~~~~~~~v~~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~ 205 (360)
T 3ab1_A 127 AGLGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTA 205 (360)
T ss_dssp CTTCSCCBCCCGGGCCCTTTBTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHH
T ss_pred cCCCcCCCCCCCCCCchhhCcCceEEEe-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHH
Confidence 99543 577777888 655544333322 2333345689999999999999999999999999999999764 1122
Q ss_pred ccC----CCCC-CeEEecceeEEecC-C---cEEEc--cC--cEEecCEEEEcccCCCccCcccccCchhhh--------
Q 018550 236 EKQ----PGYD-NMWLHSMVERANED-G---TVVFR--NG--RVVSADVIMHCTGLTGTSTTTLFLKPMALL-------- 294 (354)
Q Consensus 236 ~~l----~~~~-~~~~~~~v~~v~~~-~---~v~~~--~g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~-------- 294 (354)
+.+ .+.+ +++.++.|+++..+ + .|++. +| .++++|.||+|+|+. |+.++++..+..
T Consensus 206 ~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~---p~~~~l~~~~~~~~~g~i~v 282 (360)
T 3ab1_A 206 HEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFK---SNLGPLARWDLELYENALVV 282 (360)
T ss_dssp HSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBC---CSCGGGGGSSCCEETTEEEC
T ss_pred HHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCC---CCHHHHHhhccccccCeeee
Confidence 222 2233 78888899999854 3 26664 77 578999999999999 777666543321
Q ss_pred -------hceeeeecccchh---------hHHHHHHHhhhcc
Q 018550 295 -------LWMTIVLGHCTST---------FFRQSWHQAFHLL 320 (354)
Q Consensus 295 -------~~~i~a~GD~~~~---------~~~~~~~~~~~~~ 320 (354)
..+|||+|||+.. ...|+...|.++.
T Consensus 283 d~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~ 324 (360)
T 3ab1_A 283 DSHMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSL 324 (360)
T ss_dssp CTTSBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHH
T ss_pred cCCCcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHH
Confidence 2359999999851 2345555555553
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=241.24 Aligned_cols=247 Identities=19% Similarity=0.228 Sum_probs=167.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.|||+||||||||++||..|+++|++|+|||++ .+||+|.+. +|.+. ++
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~~~--------~~i~~----------------------~p 54 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMANT--------EEVEN----------------------FP 54 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGC--------SCBCC----------------------ST
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeeecc--------cccCC----------------------cC
Confidence 489999999999999999999999999999985 789988764 22211 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.++.. ...++.........+.... +..+..+..... ........++ .++.||+||+|
T Consensus 55 ~~~~~--------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~----~~~~~d~liiA 111 (312)
T 4gcm_A 55 GFEMI--------------TGPDLSTKMFEHAKKFGAV--YQYGDIKSVEDK---GEYKVINFGN----KELTAKAVIIA 111 (312)
T ss_dssp TCSSB--------------CHHHHHHHHHHHHHHTTCE--EEECCCCEEEEC---SSCEEEECSS----CEEEEEEEEEC
T ss_pred Ccccc--------------chHHHHHHHHHHHhhcccc--ccceeeeeeeee---ecceeeccCC----eEEEeceeEEc
Confidence 11111 2266777777777776665 555444444332 2223333333 38999999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc-----cccc
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-----ETHE 236 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-----~~~~ 236 (354)
|| +.|+.|++||.+.+.+..++.....+....++++++|||+|++|+|+|..|++.|.+||+++|++.- ....
T Consensus 112 tG--s~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~ 189 (312)
T 4gcm_A 112 TG--AEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDR 189 (312)
T ss_dssp CC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHH
T ss_pred cc--CccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchhHHHH
Confidence 99 8999999999887766666655444445567899999999999999999999999999999998741 0111
Q ss_pred cCCCCC-CeEEecceeEEecCC-c-----EE-Ecc--CcEEecCEEEEcccCCCccCcccccCchhhh------------
Q 018550 237 KQPGYD-NMWLHSMVERANEDG-T-----VV-FRN--GRVVSADVIMHCTGLTGTSTTTLFLKPMALL------------ 294 (354)
Q Consensus 237 ~l~~~~-~~~~~~~v~~v~~~~-~-----v~-~~~--g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------------ 294 (354)
.+.... .......+....... . .. ..+ +..+++|.|++++|.. |++.++...+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~---~~~~~~~~~g~~~~~G~I~vd~~~ 266 (312)
T 4gcm_A 190 AFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMK---PLTAPFKDLGITNDVGYIVTKDDM 266 (312)
T ss_dssp HHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEE---ESCGGGGGGTCBCTTSCBCCCTTS
T ss_pred HHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCC---cCchhHHhcceecCCCeEeeCCCC
Confidence 111222 233333333332111 1 11 112 2578999999999999 777776554432
Q ss_pred ---hceeeeecccchh
Q 018550 295 ---LWMTIVLGHCTST 307 (354)
Q Consensus 295 ---~~~i~a~GD~~~~ 307 (354)
..+|||+|||+..
T Consensus 267 ~Ts~pgIyA~GDv~~~ 282 (312)
T 4gcm_A 267 TTSVPGIFAAGDVRDK 282 (312)
T ss_dssp BCSSTTEEECSTTBSC
T ss_pred ccCCCCEEEEeecCCC
Confidence 1349999999863
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.8e-33 Score=246.81 Aligned_cols=252 Identities=18% Similarity=0.265 Sum_probs=186.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC----CccceeecCCCCCCCCCCCCCCCCcccccccccchhccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE----QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~----~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
|+++|+|||||++|+++|..|++.|++|+|||+.+ .+||.|.....
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~------------------------------ 70 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTE------------------------------ 70 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSE------------------------------
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchh------------------------------
Confidence 35799999999999999999999999999999943 67777765210
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
...++.++ .+....++..++.+.+.+++++ +++++ |++++.++ +.|.+.+.... ....+.+|
T Consensus 71 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~gv~--i~~~~-v~~i~~~~-~~~~v~~~~~~-~~~~~~~d 132 (338)
T 3itj_A 71 IENFPGFP-------------DGLTGSELMDRMREQSTKFGTE--IITET-VSKVDLSS-KPFKLWTEFNE-DAEPVTTD 132 (338)
T ss_dssp ECCSTTCT-------------TCEEHHHHHHHHHHHHHHTTCE--EECSC-EEEEECSS-SSEEEEETTCS-SSCCEEEE
T ss_pred hcccCCCc-------------ccCCHHHHHHHHHHHHHHcCCE--EEEeE-EEEEEEcC-CEEEEEEEecC-CCcEEEeC
Confidence 00011111 1123478999999999999998 88887 99998876 77888774211 01378999
Q ss_pred EEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCC--CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---
Q 018550 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN--PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (354)
Q Consensus 157 ~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--- 231 (354)
+||+|+| +.++.|.++|...+....++.....+.. ...+++++|||+|.+|+|+|..|++.+.+|+++++.+.
T Consensus 133 ~vvlAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~ 210 (338)
T 3itj_A 133 AIILATG--ASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA 210 (338)
T ss_dssp EEEECCC--EEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred EEEECcC--CCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC
Confidence 9999999 7888888888765433444443332222 44689999999999999999999999999999999875
Q ss_pred -ccccccCCCC-C-CeEEecceeEEecCCc----EEEcc-----CcEEecCEEEEcccCCCccCcccccCchhhh-----
Q 018550 232 -DETHEKQPGY-D-NMWLHSMVERANEDGT----VVFRN-----GRVVSADVIMHCTGLTGTSTTTLFLKPMALL----- 294 (354)
Q Consensus 232 -~~~~~~l~~~-~-~~~~~~~v~~v~~~~~----v~~~~-----g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~----- 294 (354)
....+++.+. + +++.++.|+++..++. |++.+ +.++++|.||+|+|+. |+.+++.. +..
T Consensus 211 ~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~---p~~~~~~~-~l~~~~~G 286 (338)
T 3itj_A 211 STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHT---PATKIVAG-QVDTDEAG 286 (338)
T ss_dssp CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEE---ECCGGGBT-TBCBCTTS
T ss_pred CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCC---CChhHhhC-ceEecCCC
Confidence 2233344333 4 8889999999986653 66766 3679999999999999 66666543 111
Q ss_pred ------------hceeeeecccch
Q 018550 295 ------------LWMTIVLGHCTS 306 (354)
Q Consensus 295 ------------~~~i~a~GD~~~ 306 (354)
..+|||+|||+.
T Consensus 287 ~i~v~~~~~~t~~~~vya~GD~~~ 310 (338)
T 3itj_A 287 YIKTVPGSSLTSVPGFFAAGDVQD 310 (338)
T ss_dssp CBCCCTTSSBCSSTTEEECGGGGC
T ss_pred cEEEcCcccccCCCCEEEeeccCC
Confidence 134999999996
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-32 Score=242.46 Aligned_cols=255 Identities=16% Similarity=0.225 Sum_probs=175.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
+||+||||||||++||..|+++|++|+|||+. ..|+.+.. +|.|.+..++ .++.
T Consensus 5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~-~~gg~~~~---------G~~~~~~~i~----------------~~~g 58 (314)
T 4a5l_A 5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGF-MAGGVAAG---------GQLTTTTIIE----------------NFPG 58 (314)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCS-SGGGCCTT---------CGGGGSSEEC----------------CSTT
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcccC---------CCcCChHHhh----------------hccC
Confidence 79999999999999999999999999999986 45665543 3332211110 0111
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
++. .....++.+++.+.+.+.+.. +.. ..+....... ..+.+.+.++. ++.||.||+||
T Consensus 59 ~~~-------------~i~~~~l~~~~~~~~~~~~~~--~~~-~~v~~~~~~~-~~~~~~~~~~~----~~~~~~liiAT 117 (314)
T 4a5l_A 59 FPN-------------GIDGNELMMNMRTQSEKYGTT--IIT-ETIDHVDFST-QPFKLFTEEGK----EVLTKSVIIAT 117 (314)
T ss_dssp CTT-------------CEEHHHHHHHHHHHHHHTTCE--EEC-CCEEEEECSS-SSEEEEETTCC----EEEEEEEEECC
T ss_pred Ccc-------------cCCHHHHHHHHHHHHhhcCcE--EEE-eEEEEeecCC-CceEEEECCCe----EEEEeEEEEcc
Confidence 111 112377888888888888887 544 5566665555 56666666554 89999999999
Q ss_pred CCCCCcccCCCCCCCCCCcceeecccCCCC--CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCcccc-----
Q 018550 163 GHFSVPRLAQVPGIDSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETH----- 235 (354)
Q Consensus 163 G~~s~~~~p~~~g~~~~~~~~~~~~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~----- 235 (354)
| +.|+.|++||.+.......+.....+. ...++++++|||+|++|+|+|..|++.|++|++++|.+.....
T Consensus 118 G--~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~ 195 (314)
T 4a5l_A 118 G--ATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQE 195 (314)
T ss_dssp C--EEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHH
T ss_pred c--ccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccccchhhh
Confidence 9 899999999977543344444333222 2246799999999999999999999999999999987652111
Q ss_pred ccCCCCC-CeEEecceeEEecCCc----EEEc-----cCcEEecCEEEEcccCCCccCcccccCchhhh-----------
Q 018550 236 EKQPGYD-NMWLHSMVERANEDGT----VVFR-----NGRVVSADVIMHCTGLTGTSTTTLFLKPMALL----------- 294 (354)
Q Consensus 236 ~~l~~~~-~~~~~~~v~~v~~~~~----v~~~-----~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~----------- 294 (354)
+...... ..+....+.++..... +.+. +++++++|.|++|+|++ ||++++......
T Consensus 196 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~---pn~~~l~~~~~~~~~G~iv~~~~ 272 (314)
T 4a5l_A 196 RVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHS---PNSKFLGGQVKTADDGYILTEGP 272 (314)
T ss_dssp HHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEE---ESCGGGTTSSCBCTTSCBCCBTT
T ss_pred hhhcccceeeEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccc---cChhHhcccceEcCCeeEeCCCC
Confidence 1112222 4555556666653321 3332 24689999999999999 888887543221
Q ss_pred ---hceeeeecccchhhH
Q 018550 295 ---LWMTIVLGHCTSTFF 309 (354)
Q Consensus 295 ---~~~i~a~GD~~~~~~ 309 (354)
..+|||+|||+....
T Consensus 273 ~Ts~pgIyA~GDv~~~~~ 290 (314)
T 4a5l_A 273 KTSVDGVFACGDVCDRVY 290 (314)
T ss_dssp BCSSTTEEECSTTTCSSC
T ss_pred ccCCCCEEEEEeccCCcc
Confidence 234999999997543
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.8e-32 Score=238.97 Aligned_cols=247 Identities=20% Similarity=0.251 Sum_probs=181.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+++|..|++.|++|+|||+ ..+||.|....... .++
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~~------------------------------~~~ 64 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAEAPLVE------------------------------NYL 64 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGGCSCBC------------------------------CBT
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccccchhh------------------------------hcC
Confidence 36899999999999999999999999999999 46788776531100 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+. .....++.+++.+.+.+.+++ +++ .+|.+++..+ +.|.+.+ ++. ++.+|+||+|
T Consensus 65 ~~~--------------~~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~-~~~~v~~-~~~----~~~~~~li~A 121 (319)
T 3cty_A 65 GFK--------------SIVGSELAKLFADHAANYAKI--REG-VEVRSIKKTQ-GGFDIET-NDD----TYHAKYVIIT 121 (319)
T ss_dssp TBS--------------SBCHHHHHHHHHHHHHTTSEE--EET-CCEEEEEEET-TEEEEEE-SSS----EEEEEEEEEC
T ss_pred CCc--------------ccCHHHHHHHHHHHHHHcCCE--EEE-eeEEEEEEeC-CEEEEEE-CCC----EEEeCEEEEC
Confidence 100 112367888888888888877 776 7899998876 6677776 332 7899999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----cccccc
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK 237 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~~ 237 (354)
+| +.++.|.+++...+.+..++.....+.....+++++|||+|.+|+|+|..|++.+.+|+++++.+. +...++
T Consensus 122 tG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~ 199 (319)
T 3cty_A 122 TG--TTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQE 199 (319)
T ss_dssp CC--EEECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHHHHH
T ss_pred CC--CCcccCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCCHHHHHH
Confidence 99 778888888876544333443222222234579999999999999999999999999999998764 122333
Q ss_pred CCCCC-CeEEecceeEEecCC----cEEEc---cCc--EEecCEEEEcccCCCccCcccccCchhhh-------------
Q 018550 238 QPGYD-NMWLHSMVERANEDG----TVVFR---NGR--VVSADVIMHCTGLTGTSTTTLFLKPMALL------------- 294 (354)
Q Consensus 238 l~~~~-~~~~~~~v~~v~~~~----~v~~~---~g~--~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------------- 294 (354)
+.+.+ +++.++.++++..++ .+++. +|+ ++++|.||+|+|+. ||+++++..+..
T Consensus 200 l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~---p~~~~l~~~gl~~~~~g~i~vd~~~ 276 (319)
T 3cty_A 200 IKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLI---PQTSFLKDSGVKLDERGYIVVDSRQ 276 (319)
T ss_dssp HHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEE---ECCGGGTTSCCCBCTTSCBCCCTTC
T ss_pred HhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCc---cChHHHhhccccccCCccEeCCCCC
Confidence 33444 899999999998653 26665 564 68999999999999 777777643221
Q ss_pred ---hceeeeecccchh
Q 018550 295 ---LWMTIVLGHCTST 307 (354)
Q Consensus 295 ---~~~i~a~GD~~~~ 307 (354)
..+|||+|||+..
T Consensus 277 ~t~~~~vya~GD~~~~ 292 (319)
T 3cty_A 277 RTSVPGVYAAGDVTSG 292 (319)
T ss_dssp BCSSTTEEECSTTBTT
T ss_pred ccCCCCEEEeecccCc
Confidence 2349999999874
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-32 Score=239.27 Aligned_cols=249 Identities=18% Similarity=0.236 Sum_probs=184.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+++|+|||||++|+++|..|++.|+ +|+|||++ .+||.|....... .+
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~~~------------------------------~~ 49 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSEIE------------------------------NY 49 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSCBC------------------------------CS
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccccccccc------------------------------cC
Confidence 4789999999999999999999999 99999995 6788776531100 00
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
+.++ ....+..+.+++.+.+.+++++ ++. .+|++++.++ +.|.+.+.++. ++.||+||+
T Consensus 50 ~~~~-------------~~~~~~~~~~~l~~~~~~~~v~--~~~-~~v~~i~~~~-~~~~v~~~~g~----~~~~~~vv~ 108 (311)
T 2q0l_A 50 PGVK-------------EVVSGLDFMQPWQEQCFRFGLK--HEM-TAVQRVSKKD-SHFVILAEDGK----TFEAKSVII 108 (311)
T ss_dssp TTCC-------------SCBCHHHHHHHHHHHHHTTSCE--EEC-SCEEEEEEET-TEEEEEETTSC----EEEEEEEEE
T ss_pred CCCc-------------ccCCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEEcC-CEEEEEEcCCC----EEECCEEEE
Confidence 0111 1123478889999988888888 777 7899999876 67888776654 799999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----ccccc
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHE 236 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~ 236 (354)
||| +.++.|+++|...+.+..++.....+.....+++++|||+|.+|+|+|..|++.|.+|+++++++. +...+
T Consensus 109 AtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~ 186 (311)
T 2q0l_A 109 ATG--GSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLE 186 (311)
T ss_dssp CCC--EEECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHH
T ss_pred CCC--CCCCCCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHH
Confidence 999 788888888865443333443322222334679999999999999999999999999999999774 22233
Q ss_pred cCC-CCC-CeEEecceeEEecC-C---cEEEc---cCc--EEecCEEEEcccCCCccCcccccCchh----hh-------
Q 018550 237 KQP-GYD-NMWLHSMVERANED-G---TVVFR---NGR--VVSADVIMHCTGLTGTSTTTLFLKPMA----LL------- 294 (354)
Q Consensus 237 ~l~-~~~-~~~~~~~v~~v~~~-~---~v~~~---~g~--~~~~D~vi~a~G~~~~~p~~~~l~~~~----~~------- 294 (354)
++. +.+ +++.++.++++..+ + .|+++ +|+ ++++|.||+|+|++ |+++++...+ ..
T Consensus 187 ~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~---p~~~~l~~~g~~~~l~~~~~g~i 263 (311)
T 2q0l_A 187 HAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYD---VNNAVLKQEDNSMLCKCDEYGSI 263 (311)
T ss_dssp HHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEE---ECCGGGBCTTSCBSSCBCTTSCB
T ss_pred HHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCc---cChhhhhcccccceeEeccCCCE
Confidence 343 334 78888899999754 3 26665 565 78999999999999 7777765542 11
Q ss_pred ---------hceeeeecccchh
Q 018550 295 ---------LWMTIVLGHCTST 307 (354)
Q Consensus 295 ---------~~~i~a~GD~~~~ 307 (354)
..+|||+|||+..
T Consensus 264 ~vd~~~~t~~~~vya~GD~~~~ 285 (311)
T 2q0l_A 264 VVDFSMKTNVQGLFAAGDIRIF 285 (311)
T ss_dssp CCCTTCBCSSTTEEECSTTBTT
T ss_pred EeCCccccCCCCeEEcccccCc
Confidence 2359999999873
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-32 Score=236.93 Aligned_cols=249 Identities=19% Similarity=0.242 Sum_probs=183.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||++|+++|..|++.|++|+|+|+ .+||.|....... .+.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~~~~------------------------------~~~ 48 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTVDIE------------------------------NYI 48 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCCEEC------------------------------CBT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceeccccccc------------------------------ccc
Confidence 47899999999999999999999999999986 4688776521100 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC--CcEEEEEeecCCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~--~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
.. .+....++.+++.+.+++.+++ ++.+++|+.++.+.+ +.|.+.+.++. ++.||+||
T Consensus 49 ~~--------------~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~~~~~~v~~~~g~----~~~~~~lv 108 (310)
T 1fl2_A 49 SV--------------PKTEGQKLAGALKVHVDEYDVD--VIDSQSASKLIPAAVEGGLHQIETASGA----VLKARSII 108 (310)
T ss_dssp TB--------------SSEEHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTCCEEEEETTSC----EEEEEEEE
T ss_pred Cc--------------CCCCHHHHHHHHHHHHHHcCCe--EEccCEEEEEEecccCCceEEEEECCCC----EEEeCEEE
Confidence 01 1123378888999888888887 888889999986531 37888887664 78999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc----ccc
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETH 235 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~----~~~ 235 (354)
+||| +.++.|+++|.+.+....++.....+.....+++++|||+|++|+|+|..|++.+.+|+++++.+.. ...
T Consensus 109 ~AtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~ 186 (310)
T 1fl2_A 109 VATG--AKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQ 186 (310)
T ss_dssp ECCC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHH
T ss_pred ECcC--CCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCccHHHH
Confidence 9999 6788888888876544444433322223346799999999999999999999999999999998751 122
Q ss_pred ccCCC-CC-CeEEecceeEEecC-Cc---EEEcc---C--cEEecCEEEEcccCCCccCcccccCchhh-----------
Q 018550 236 EKQPG-YD-NMWLHSMVERANED-GT---VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMAL----------- 293 (354)
Q Consensus 236 ~~l~~-~~-~~~~~~~v~~v~~~-~~---v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~----------- 293 (354)
+++.+ .+ +++.++.++++..+ +. |++.+ | .++++|.|++|+|++ ||++++.....
T Consensus 187 ~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~---p~~~~l~~~l~~~~~g~i~vd~ 263 (310)
T 1fl2_A 187 DKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLL---PNTNWLEGAVERNRMGEIIIDA 263 (310)
T ss_dssp HHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEE---ESCGGGTTTSCBCTTSCBCCCT
T ss_pred HHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCc---cCchHHhccccccCCCcEEcCC
Confidence 33433 34 88888999999865 22 56654 4 368999999999999 77777654211
Q ss_pred ----hhceeeeecccchh
Q 018550 294 ----LLWMTIVLGHCTST 307 (354)
Q Consensus 294 ----~~~~i~a~GD~~~~ 307 (354)
...+|||+|||+..
T Consensus 264 ~~~t~~~~vya~GD~~~~ 281 (310)
T 1fl2_A 264 KCETNVKGVFAAGDCTTV 281 (310)
T ss_dssp TCBCSSTTEEECSTTBSC
T ss_pred CCccCCCCEEEeecccCC
Confidence 02359999999974
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=243.39 Aligned_cols=263 Identities=16% Similarity=0.135 Sum_probs=177.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
|+++|+|||||++|+++|..|++. |.+|+|||+++.+|...... . .+ ...
T Consensus 1 M~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~---~----------------~~------~~~--- 52 (452)
T 3oc4_A 1 MSLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGL---S----------------AY------FNH--- 52 (452)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC------------------------------------
T ss_pred CCCCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccc---h----------------hh------hcC---
Confidence 668999999999999999999998 89999999987654110000 0 00 000
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
. +....++.....+.+.+.+++ ++++++|++++..+ +.+.+.... ...++.||+|
T Consensus 53 ---~----------------~~~~~~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~-~~v~v~~~~---~~~~~~~d~l 107 (452)
T 3oc4_A 53 ---T----------------INELHEARYITEEELRRQKIQ--LLLNREVVAMDVEN-QLIAWTRKE---EQQWYSYDKL 107 (452)
T ss_dssp ---------------------------CCCCHHHHHHTTEE--EECSCEEEEEETTT-TEEEEEETT---EEEEEECSEE
T ss_pred ---C----------------CCCHHHhhcCCHHHHHHCCCE--EEECCEEEEEECCC-CEEEEEecC---ceEEEEcCEE
Confidence 0 000011111123344567777 88899999998765 556664111 2358999999
Q ss_pred EEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCC-----CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--
Q 018550 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP-----FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-- 231 (354)
|+||| +.|+.|+++|.+. ...++...+.+... ..+++++|||+|.+|+|+|..|++.|.+|+++.+.+.
T Consensus 108 viAtG--~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 183 (452)
T 3oc4_A 108 ILATG--ASQFSTQIRGSQT--EKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL 183 (452)
T ss_dssp EECCC--CCBCCCCCBTTTC--TTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred EECCC--cccCCCCCCCCCC--CCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc
Confidence 99999 8999999988764 13344333322211 2579999999999999999999999999999999764
Q ss_pred ---------ccccccCCCCC-CeEEecceeEEe-cCCc--EEEccCcEEecCEEEEcccCCCccCcccccCchhh-----
Q 018550 232 ---------DETHEKQPGYD-NMWLHSMVERAN-EDGT--VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMAL----- 293 (354)
Q Consensus 232 ---------~~~~~~l~~~~-~~~~~~~v~~v~-~~~~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~----- 293 (354)
+...+.+++.+ +++.++.|++++ .++. |.++++ ++++|.||+|+|++ |+++++.....
T Consensus 184 ~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~---p~~~~l~~~~~~~~~g 259 (452)
T 3oc4_A 184 PKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLH---PQLAYLDKKIQRNLDQ 259 (452)
T ss_dssp TTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCB---CCCSSCCTTSCBCTTS
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCC---CChHHHHhhhccCCCC
Confidence 11223345555 899999999998 3343 455555 89999999999999 77777654211
Q ss_pred ----------hhceeeeecccchh----------------hHHHHHHHhhhccCCCc
Q 018550 294 ----------LLWMTIVLGHCTST----------------FFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 294 ----------~~~~i~a~GD~~~~----------------~~~~~~~~~~~~~~~~~ 324 (354)
...+|||+|||+.. ...|+...+.++.+...
T Consensus 260 ~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~ 316 (452)
T 3oc4_A 260 TIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTH 316 (452)
T ss_dssp CBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCC
T ss_pred CEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCc
Confidence 12349999999863 34566667777766543
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-32 Score=253.21 Aligned_cols=289 Identities=19% Similarity=0.192 Sum_probs=184.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (354)
++||+|||||++|+++|..|++.|++|+|||+.+.+||+|.+. +|.|.+.+..... +..+...........
T Consensus 25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~--------gciP~k~l~~~~~~~~~~~~~~~~~g~~~ 96 (491)
T 3urh_A 25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNV--------GCIPSKALLHASEMFHQAQHGLEALGVEV 96 (491)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHSSGGGTEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccc--------cchhhHHHHHHHHHHHHHHhhHhhcCccc
Confidence 4799999999999999999999999999999988999999874 6776655443322 222211111111110
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHH-----------HHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEV-----------LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
... ..++..+ ...+.....+.+++ +..+. ...+ +. +.+.+...++ .
T Consensus 97 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-~~~~--~~-~~~~v~~~~g--~ 153 (491)
T 3urh_A 97 ANP---------------KLNLQKMMAHKDATVKSNVDGVSFLFKKNKID--GFQGT-GKVL--GQ-GKVSVTNEKG--E 153 (491)
T ss_dssp CCC---------------EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESE-EEEC--SS-SEEEEECTTS--C
T ss_pred CCC---------------ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEE-EEEe--cC-CEEEEEeCCC--c
Confidence 000 0011222 22233444555666 55543 2222 22 4455554333 2
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCC-CCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDS-WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~-~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| +.| +.+||... +.+..++...........+++++|||+|++|+|+|..|++.|.+|+++++
T Consensus 154 ~~~~~~d~lViATG--s~p--~~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~ 229 (491)
T 3urh_A 154 EQVLEAKNVVIATG--SDV--AGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEF 229 (491)
T ss_dssp EEEEECSEEEECCC--EEC--CCBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred eEEEEeCEEEEccC--CCC--CCCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence 35899999999999 554 34566542 22232333222222334679999999999999999999999999999998
Q ss_pred cCC----------ccccccCCCCC-CeEEecceeEEecCCc---EEEcc---C--cEEecCEEEEcccCCCccCccccc-
Q 018550 229 SVA----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFL- 288 (354)
Q Consensus 229 ~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l- 288 (354)
.+. +...+.+++.+ +++.++.|+++..++. +.+++ | +++++|.||+|+|++ |+++++
T Consensus 230 ~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~---p~~~~l~ 306 (491)
T 3urh_A 230 LDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRK---PSTDGLG 306 (491)
T ss_dssp SSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCE---ECCTTSC
T ss_pred cccccccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCc---cCCCccC
Confidence 764 11223334444 8889999999985432 55553 4 579999999999999 777653
Q ss_pred -Cchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCCccccc
Q 018550 289 -KPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLSL 328 (354)
Q Consensus 289 -~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~~ 328 (354)
...+.. ..+|||+|||+.. ...|+...+.++.+....+.+
T Consensus 307 l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~ 369 (491)
T 3urh_A 307 LAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQAGHVNY 369 (491)
T ss_dssp HHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred chhcCceECCCCCEeECCCCCCCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCCcccCC
Confidence 211111 2349999999952 456777788888776544333
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-32 Score=252.15 Aligned_cols=284 Identities=14% Similarity=0.168 Sum_probs=187.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (354)
+++|+|||||++|+++|..|++.|.+|+|||+++.+||.|... +|.|.+.++... .+..+.. ... +
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~--------g~~psk~ll~~~~~~~~~~~-~~~--~-- 72 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNV--------GCIPSKALLHNAAVIDEVRH-LAA--N-- 72 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHH--------SHHHHHHHHHHHHHHHHHHH-GGG--G--
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeee--------cccchHHHHHHHHHHHHHHH-HHh--C--
Confidence 3689999999999999999999999999999988899998763 555543332211 1111111 100 0
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec---
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK--- 146 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g--- 146 (354)
+.++.. ...+...+. ..+...+.+.+++ ++.++.+. .++ +.+.+...++
T Consensus 73 -gi~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~---~~~-~~v~v~~~~g~~~ 135 (482)
T 1ojt_A 73 -GIKYPE----------PELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVD--VIQGDGQF---LDP-HHLEVSLTAGDAY 135 (482)
T ss_dssp -TCCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEEEEEEE---EET-TEEEEEEEEEEET
T ss_pred -CcccCC----------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEeeEEEE---ccC-CEEEEEecCCccc
Confidence 111100 001112222 2234555666787 77765443 233 5666665443
Q ss_pred -----CCceEEEEeCEEEEeeCCCCCcccCC-CCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccC
Q 018550 147 -----DDVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFA 220 (354)
Q Consensus 147 -----~~~~~~~~~d~vIlAtG~~s~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g 220 (354)
++...++.||+||+||| +.|+.|+ ++ .+. .+.++....... ..+++++|||+|++|+|+|..|++.|
T Consensus 136 ~~~~~~g~~~~i~ad~lViAtG--s~p~~~~~i~-~~~---~v~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~G 208 (482)
T 1ojt_A 136 EQAAPTGEKKIVAFKNCIIAAG--SRVTKLPFIP-EDP---RIIDSSGALALK-EVPGKLLIIGGGIIGLEMGTVYSTLG 208 (482)
T ss_dssp TEEEEEEEEEEEEEEEEEECCC--EEECCCSSCC-CCT---TEECHHHHTTCC-CCCSEEEEESCSHHHHHHHHHHHHHT
T ss_pred ccccccCcceEEEcCEEEECCC--CCCCCCCCCC-ccC---cEEcHHHHhccc-ccCCeEEEECCCHHHHHHHHHHHHcC
Confidence 11124789999999999 7787776 44 222 344443333322 24799999999999999999999999
Q ss_pred CEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCc---EEEcc----CcEEecCEEEEcccCCCcc
Q 018550 221 KEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRN----GRVVSADVIMHCTGLTGTS 282 (354)
Q Consensus 221 ~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~----g~~~~~D~vi~a~G~~~~~ 282 (354)
.+|+++++.+. +...+.+++.+ +++.++.|+++..++. +++++ |+++++|.||+|+|++
T Consensus 209 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~--- 285 (482)
T 1ojt_A 209 SRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRA--- 285 (482)
T ss_dssp CEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEE---
T ss_pred CeEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCC---
Confidence 99999999874 11223344555 8899999999985432 66666 7789999999999999
Q ss_pred Cccccc--Cchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCCcc
Q 018550 283 TTTLFL--KPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 283 p~~~~l--~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~ 325 (354)
||++++ +..+.. ..+|||+|||+.. ...|+...+.++.+....
T Consensus 286 p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~ 352 (482)
T 1ojt_A 286 PNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAY 352 (482)
T ss_dssp ECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCCCChhhcCceeCCCCCEeeCCCcccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCCCcc
Confidence 777763 333221 1349999999873 356777778888775433
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=237.54 Aligned_cols=248 Identities=17% Similarity=0.246 Sum_probs=180.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||++|+++|..|++.|++|++||+. .+||.|....... .++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~------------------------------~~~ 53 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEVE------------------------------NWP 53 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGGGCSBCC------------------------------CST
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEecchhhh------------------------------hCC
Confidence 368999999999999999999999999999974 6788776521100 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.++. .....++.+++.+.+.+.+++ ++.++ +..++..+ +.|++ ..++. ++.||+||+|
T Consensus 54 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~--~~~~~-v~~i~~~~-~~~~v-~~~~~----~~~~~~lv~A 111 (320)
T 1trb_A 54 GDPN-------------DLTGPLLMERMHEHATKFETE--IIFDH-INKVDLQN-RPFRL-NGDNG----EYTCDALIIA 111 (320)
T ss_dssp TCCS-------------SCBHHHHHHHHHHHHHHTTCE--EECCC-EEEEECSS-SSEEE-EESSC----EEEEEEEEEC
T ss_pred CCCC-------------CCCHHHHHHHHHHHHHHCCCE--EEEee-eeEEEecC-CEEEE-EeCCC----EEEcCEEEEC
Confidence 1110 112377888888888888988 77765 88888766 77887 55543 7899999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc--------c
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--------E 233 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~--------~ 233 (354)
|| +.++.|.++|...+.+..++.....+.....+++++|||+|.+|+|+|..|++.+.+|+++++++.. .
T Consensus 112 tG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~ 189 (320)
T 1trb_A 112 TG--ASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKR 189 (320)
T ss_dssp CC--EEECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHH
T ss_pred CC--CCcCCCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccCHHHHHH
Confidence 99 7788888877654433334433222222346799999999999999999999999999999997641 1
Q ss_pred ccccCCCCC-CeEEecceeEEecCC-c---EEEcc----C--cEEecCEEEEcccCCCccCcccccCc-h----------
Q 018550 234 THEKQPGYD-NMWLHSMVERANEDG-T---VVFRN----G--RVVSADVIMHCTGLTGTSTTTLFLKP-M---------- 291 (354)
Q Consensus 234 ~~~~l~~~~-~~~~~~~v~~v~~~~-~---v~~~~----g--~~~~~D~vi~a~G~~~~~p~~~~l~~-~---------- 291 (354)
..+.+.+.+ +++.++.|+++..++ . |++++ | .++++|.||+|+|++ |++++++. .
T Consensus 190 l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~---p~~~~~~~~l~~~~G~i~vd 266 (320)
T 1trb_A 190 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS---PNTAIFEGQLELENGYIKVQ 266 (320)
T ss_dssp HHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEE---ESCGGGTTTSCEETTEECCC
T ss_pred HHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCC---CChHHhcccccccCceEEEC
Confidence 222333445 888999999998654 2 66654 4 578999999999999 76666641 1
Q ss_pred --------hhhhceeeeecccchh
Q 018550 292 --------ALLLWMTIVLGHCTST 307 (354)
Q Consensus 292 --------~~~~~~i~a~GD~~~~ 307 (354)
.....+||++|||+..
T Consensus 267 ~~~~~~~~~t~~~~vya~GD~~~~ 290 (320)
T 1trb_A 267 SGIHGNATQTSIPGVFAAGDVMDH 290 (320)
T ss_dssp CSSSSCTTBCSSTTEEECGGGGCS
T ss_pred CCcccccccCCCCCEEEcccccCC
Confidence 1123469999999874
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=234.36 Aligned_cols=248 Identities=23% Similarity=0.282 Sum_probs=185.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEE-EeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVV-YEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~l-ie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+++|+|||||++|+++|..|++.|++|+| +|+ +.+||.|....... .+
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~~------------------------------~~ 52 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEIE------------------------------NY 52 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCBC------------------------------CS
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeeceec------------------------------cC
Confidence 57999999999999999999999999999 999 67888887631110 00
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEEEEEeecCCceEEEEeCEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+.++ .+....++..++.+.+.+++++ ++++ +|.++ .+++ +.|.+....+. ++.||+||
T Consensus 53 ~~~~-------------~~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i-~~~~~~~~~v~~~~~~----~~~~d~lv 111 (315)
T 3r9u_A 53 PGVA-------------QVMDGISFMAPWSEQCMRFGLK--HEMV-GVEQI-LKNSDGSFTIKLEGGK----TELAKAVI 111 (315)
T ss_dssp TTCC-------------SCBCHHHHHHHHHHHHTTTCCE--EECC-CEEEE-EECTTSCEEEEETTSC----EEEEEEEE
T ss_pred CCCC-------------CCCCHHHHHHHHHHHHHHcCcE--EEEE-EEEEE-ecCCCCcEEEEEecCC----EEEeCEEE
Confidence 1111 1224488999999999999988 7776 88888 5431 46775444332 78999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----cccc
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH 235 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~ 235 (354)
+||| +.++.|.++|...+.+..++...+.+.....+++++|||+|.+|+|+|..|.+.+.+|+++++.+. ....
T Consensus 112 lAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~ 189 (315)
T 3r9u_A 112 VCTG--SAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTV 189 (315)
T ss_dssp ECCC--EEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHH
T ss_pred EeeC--CCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHH
Confidence 9999 788999999988766566665544444445689999999999999999999999999999999875 1122
Q ss_pred ccC-CCCC-CeEEecceeEEecCC-c---EEEc--cCc--EEecCEEEEcccCCCccCcccccCc---hh-hh-------
Q 018550 236 EKQ-PGYD-NMWLHSMVERANEDG-T---VVFR--NGR--VVSADVIMHCTGLTGTSTTTLFLKP---MA-LL------- 294 (354)
Q Consensus 236 ~~l-~~~~-~~~~~~~v~~v~~~~-~---v~~~--~g~--~~~~D~vi~a~G~~~~~p~~~~l~~---~~-~~------- 294 (354)
+++ ++.+ +++.++.+.++..++ . |++. +|+ ++++|.|++|+|++ |+.+++.. .+ ..
T Consensus 190 ~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~---p~~~~~~~~~~~g~l~~~~~g~i 266 (315)
T 3r9u_A 190 EKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLN---VRNEILKQDDSKFLCNMEEGGQV 266 (315)
T ss_dssp HHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEE---ECCGGGBCTTSCBSSCBCTTSCB
T ss_pred HHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCC---CCchhhhcccccceeeecCCCcE
Confidence 222 3444 888899999998554 2 5565 775 78999999999999 77666554 11 11
Q ss_pred ---------hceeeeecccch
Q 018550 295 ---------LWMTIVLGHCTS 306 (354)
Q Consensus 295 ---------~~~i~a~GD~~~ 306 (354)
..+|||+|||+.
T Consensus 267 ~vd~~~~t~~~~v~a~GD~~~ 287 (315)
T 3r9u_A 267 SVDLKMQTSVAGLFAAGDLRK 287 (315)
T ss_dssp CCCTTCBCSSTTEEECGGGBT
T ss_pred EeCCCcccCCCCEEEeecccC
Confidence 145999999974
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=243.94 Aligned_cols=202 Identities=28% Similarity=0.466 Sum_probs=156.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||++|+++|..|++.|++|+|||+++.+||+|..+ +.|.... +.+...+.+
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~---------~~pg~~~-----------d~~~~~~~~-- 74 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN---------RYPGARC-----------DIESIEYCY-- 74 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC---------CCTTCBC-----------SSCTTTSSC--
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccc---------CCCceee-----------ccccccccc--
Confidence 689999999999999999999999999999999999999753 1111100 001000100
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEEEEEeecCCceEEEEeCEEEEe
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.........+...|+.+.++.+|+...++++++..+++++++|++++++++ +.|+|++.+|. ++.+|+||+|
T Consensus 75 -~f~~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~----~~~ad~vV~A 149 (542)
T 1w4x_A 75 -SFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD----RIRARYLIMA 149 (542)
T ss_dssp -CSCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC----EEEEEEEEEC
T ss_pred -ccChhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCC----EEEeCEEEEC
Confidence 00000000001233567789999999999999886655999999999998753 57999887764 7899999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCC-CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
||.++.|+.|+++|.+.+.+..+|+..+. +.....+++|+|||+|.+|+|++..|++.+++|+++.|++.
T Consensus 150 tG~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~ 220 (542)
T 1w4x_A 150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH 220 (542)
T ss_dssp CCSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred cCCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence 99999999999999988888889888776 43556899999999999999999999999999999998763
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=237.53 Aligned_cols=266 Identities=20% Similarity=0.260 Sum_probs=180.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++|+|||||++|+++|..|++.|. +|+|||+++ +|+.|...+.... ...|. .....+++.
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~---~~~~~---------------~~~~~~g~~ 65 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTR---TITPS---------------FTSNGFGMP 65 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCB---CSSCC---------------CCCGGGTCC
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCccccc---ccCcc---------------hhcccCCch
Confidence 789999999999999999999999 999999987 9998876422110 00000 000011111
Q ss_pred CCCCCccCCC-CCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYE-GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
++........ .......++....+.+++.+.+++++++ ++++++|++++.++ +.|.+.+.++ ++.||+||+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~~d~vVl 137 (369)
T 3d1c_A 66 DMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELN--IFENTVVTNISADD-AYYTIATTTE-----TYHADYIFV 137 (369)
T ss_dssp CTTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SSEEEEESSC-----CEEEEEEEE
T ss_pred hhhhccccccccccccccCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEECC-CeEEEEeCCC-----EEEeCEEEE
Confidence 1110000000 0001133566688999999999999998 89999999999876 6788887654 589999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCcc-------
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE------- 233 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~------- 233 (354)
|||+++.|. +++ +..+++..+.+...+++++|+|||+|.+|+|+|..|++.|.+|+++++++...
T Consensus 138 AtG~~~~p~---ip~-----~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~ 209 (369)
T 3d1c_A 138 ATGDYNFPK---KPF-----KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPS 209 (369)
T ss_dssp CCCSTTSBC---CCS-----SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CT
T ss_pred CCCCCCccC---CCC-----CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCC
Confidence 999655443 444 24456656655555567899999999999999999999999999999876310
Q ss_pred ----------ccccCCCC--CCeEEecceeEEecC-C--cEEEccCcEEe-cCEEEEcccCCCccCcccccCchhh----
Q 018550 234 ----------THEKQPGY--DNMWLHSMVERANED-G--TVVFRNGRVVS-ADVIMHCTGLTGTSTTTLFLKPMAL---- 293 (354)
Q Consensus 234 ----------~~~~l~~~--~~~~~~~~v~~v~~~-~--~v~~~~g~~~~-~D~vi~a~G~~~~~p~~~~l~~~~~---- 293 (354)
..+.+++. .+++.++.|.++..+ + .|++.+|+++. +|.||+|+|++ |+.+++.+...
T Consensus 210 ~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~---~~~~~~~~~~~~~~~ 286 (369)
T 3d1c_A 210 VRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFD---ATKNPIVQQLFVTTN 286 (369)
T ss_dssp TSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBC---GGGSHHHHHHSCCTT
T ss_pred ccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccC---CccchhhhhhccCCC
Confidence 11112233 477888899999532 2 26778887665 69999999999 66544332110
Q ss_pred ------------hhceeeeecccch
Q 018550 294 ------------LLWMTIVLGHCTS 306 (354)
Q Consensus 294 ------------~~~~i~a~GD~~~ 306 (354)
...+||++|||+.
T Consensus 287 g~i~v~~~~~~t~~~~v~a~GD~~~ 311 (369)
T 3d1c_A 287 QDIKLTTHDESTRYPNIFMIGATVE 311 (369)
T ss_dssp SCCCBCTTSBBSSSTTEEECSTTCC
T ss_pred CCEEechhhcccCCCCeEEeccccc
Confidence 1235999999986
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-32 Score=250.23 Aligned_cols=288 Identities=15% Similarity=0.180 Sum_probs=186.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (354)
+++|+|||||++|+++|..|++.|.+|+|||++ .+||.|.+. +|.|.+.++... .+..+. ........+
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~--------g~~p~k~l~~~~~~~~~~~-~~~~~g~~~ 72 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNV--------GCIPSKALISASHRYEQAK-HSEEMGIKA 72 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHT--------SHHHHHHHHHHHHHHHHHH-TCGGGTEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCc--------CchhhHHHHHHHHHHHHHH-HHHhcCccc
Confidence 579999999999999999999999999999997 889998763 566544333221 111111 111000000
Q ss_pred cCCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 81 QAYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
...... ....+... ..+.+.+.+.+++.+++ ++.++.+. + +. +.+.+...++. .++.||
T Consensus 73 ~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-i--d~-~~v~V~~~~G~---~~i~~d 135 (455)
T 1ebd_A 73 ENVTID--------FAKVQEWKASVVKKLTGGVEGLLKGNKVE--IVKGEAYF-V--DA-NTVRVVNGDSA---QTYTFK 135 (455)
T ss_dssp CSCEEC--------HHHHHHHHHHHHHHHHHHHHHHHHTTTCE--EEESEEEE-E--ET-TEEEEEETTEE---EEEECS
T ss_pred CCCccC--------HHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE-c--cC-CeEEEEeCCCc---EEEEeC
Confidence 000000 00000000 11333445556666777 77766543 3 33 56777665441 478999
Q ss_pred EEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----
Q 018550 157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----- 231 (354)
Q Consensus 157 ~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----- 231 (354)
+||+||| +.|+.|+++|.+. ...++....... ..+++++|||+|++|+|+|..|++.|.+|+++++.+.
T Consensus 136 ~lViATG--s~p~~~~~~g~~~---~v~~~~~~~~~~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~ 209 (455)
T 1ebd_A 136 NAIIATG--SRPIELPNFKFSN---RILDSTGALNLG-EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGF 209 (455)
T ss_dssp EEEECCC--EEECCBTTBCCCS---SEECHHHHHTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS
T ss_pred EEEEecC--CCCCCCCCCCccc---eEecHHHHhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccc
Confidence 9999999 7888888877553 234433332222 2469999999999999999999999999999999764
Q ss_pred -----ccccccCCCCC-CeEEecceeEEecCC-c--EEEc---cCcEEecCEEEEcccCCCccCcccc--cCchhhh---
Q 018550 232 -----DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFR---NGRVVSADVIMHCTGLTGTSTTTLF--LKPMALL--- 294 (354)
Q Consensus 232 -----~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~---~g~~~~~D~vi~a~G~~~~~p~~~~--l~~~~~~--- 294 (354)
+...+.+++.+ +++.++.|+++..++ . +.+. +++++++|.||+|+|++ |++++ ++..+..
T Consensus 210 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~---p~~~~l~~~~~g~~~~~ 286 (455)
T 1ebd_A 210 EKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRR---PNTDELGLEQIGIKMTN 286 (455)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEE---ESCSSSSTTTTTCCBCT
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCC---cccCcCChhhcCCccCC
Confidence 11222334444 889999999998543 2 3443 45689999999999999 66665 3332211
Q ss_pred -------------hceeeeecccchh------hHHHHHHHhhhccCCCcc
Q 018550 295 -------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 295 -------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~ 325 (354)
..+|||+|||+.. ...|+...+.++.+....
T Consensus 287 ~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 336 (455)
T 1ebd_A 287 RGLIEVDQQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHPSA 336 (455)
T ss_dssp TSCBCCCTTCBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSCCCC
T ss_pred CCCEeeCCCcccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCCcc
Confidence 2349999999873 356777778888775433
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-32 Score=248.44 Aligned_cols=264 Identities=16% Similarity=0.195 Sum_probs=180.5
Q ss_pred eEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccce-eecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGS-WIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+|+|||||+||+++|..|+++| .+|+|||+++..+.. +.. | ....
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l------------~-----------~~~~--------- 49 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCAL------------P-----------YVIG--------- 49 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGH------------H-----------HHHT---------
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchh------------H-----------HHHc---------
Confidence 6999999999999999999988 479999997644211 100 0 0000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
...... . ..+.....++.++.+++ ++.+++|+.|+... ....+.... .....++.||+||+
T Consensus 50 -~~~~~~--------~------~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~-~~~~~~~~~-~~~~~~~~yd~lVI 110 (437)
T 4eqs_A 50 -EVVEDR--------R------YALAYTPEKFYDRKQIT--VKTYHEVIAINDER-QTVSVLNRK-TNEQFEESYDKLIL 110 (437)
T ss_dssp -TSSCCG--------G------GTBCCCHHHHHHHHCCE--EEETEEEEEEETTT-TEEEEEETT-TTEEEEEECSEEEE
T ss_pred -CCccch--------h------hhhhcCHHHHHHhcCCE--EEeCCeEEEEEccC-cEEEEEecc-CCceEEEEcCEEEE
Confidence 000000 0 00000112345667888 88999999998644 333333222 22346789999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCCC--CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----cc
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DE 233 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-----~~ 233 (354)
||| ++|+.|++++...+..+.+......+. ....+++++|||+|++|+|+|..+++.|.+|+++++.+. +.
T Consensus 111 ATG--s~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~ 188 (437)
T 4eqs_A 111 SPG--ASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDA 188 (437)
T ss_dssp CCC--EEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCG
T ss_pred CCC--CccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccccc
Confidence 999 889999888855432222211111000 112468999999999999999999999999999999875 11
Q ss_pred -----ccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCchhhhh------------
Q 018550 234 -----THEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALLL------------ 295 (354)
Q Consensus 234 -----~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~~------------ 295 (354)
..+.+++.+ +++.++.|++++.+. +++++|+++++|.|++|+|++ ||+++++..+...
T Consensus 189 ~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~-v~~~~g~~~~~D~vl~a~G~~---Pn~~~~~~~gl~~~~~G~I~vd~~~ 264 (437)
T 4eqs_A 189 DMNQPILDELDKREIPYRLNEEINAINGNE-ITFKSGKVEHYDMIIEGVGTH---PNSKFIESSNIKLDRKGFIPVNDKF 264 (437)
T ss_dssp GGGHHHHHHHHHTTCCEEESCCEEEEETTE-EEETTSCEEECSEEEECCCEE---ESCGGGTTSSCCCCTTSCEECCTTC
T ss_pred hhHHHHHHHhhccceEEEeccEEEEecCCe-eeecCCeEEeeeeEEEEecee---cCcHHHHhhhhhhccCCcEecCCCc
Confidence 222334444 899999999998776 999999999999999999999 8888876554431
Q ss_pred ----ceeeeecccchh----------------hHHHHHHHhhhccCCCc
Q 018550 296 ----WMTIVLGHCTST----------------FFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 296 ----~~i~a~GD~~~~----------------~~~~~~~~~~~~~~~~~ 324 (354)
.+|||+|||+.. ...|+...+.++.|...
T Consensus 265 ~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~ 313 (437)
T 4eqs_A 265 ETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDT 313 (437)
T ss_dssp BCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTT
T ss_pred cCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCC
Confidence 239999999752 34677778888877654
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-32 Score=248.20 Aligned_cols=275 Identities=18% Similarity=0.184 Sum_probs=188.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCc--EEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHT--VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~--v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
|+++|+|||||++|+++|..|+++|++ |+|||+++.++..... +.........
T Consensus 1 M~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~-------------------------l~~~~~~g~~ 55 (410)
T 3ef6_A 1 MATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPS-------------------------LSKAVLDGSL 55 (410)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGG-------------------------GGTHHHHTSS
T ss_pred CCCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCcc-------------------------ccHHHhCCCC
Confidence 678999999999999999999999987 9999997654211000 0000000000
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
.... + ....++..+.+++ ++.+++|+.++.. .+++.+.++. ++.||+|
T Consensus 56 ~~~~----------------------~-~~~~~~~~~~~i~--~~~~~~v~~id~~---~~~v~~~~g~----~~~~d~l 103 (410)
T 3ef6_A 56 ERPP----------------------I-LAEADWYGEARID--MLTGPEVTALDVQ---TRTISLDDGT----TLSADAI 103 (410)
T ss_dssp SSCC----------------------B-SSCTTHHHHTTCE--EEESCCEEEEETT---TTEEEETTSC----EEECSEE
T ss_pred CHHH----------------------h-cCCHHHHHHCCCE--EEeCCEEEEEECC---CCEEEECCCC----EEECCEE
Confidence 0000 0 0112234556888 8999999999763 4577777764 8999999
Q ss_pred EEeeCCCCCcccCCCCCCCCCCcceeecccCC-----CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--
Q 018550 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-- 231 (354)
|+||| +.|+.|+++|.+.. ...+..... ......+++++|||+|.+|+|+|..|.+.|.+|+++++.+.
T Consensus 104 vlAtG--~~p~~~~ipG~~~~--~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l 179 (410)
T 3ef6_A 104 VIATG--SRARTMALPGSQLP--GVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL 179 (410)
T ss_dssp EECCC--EEECCCCCTTTTST--TEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred EEccC--CcccCCCCCCcccc--ceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence 99999 78999999886531 222211111 01123579999999999999999999999999999999874
Q ss_pred ---------ccccccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCCccCcccccCchhhh----
Q 018550 232 ---------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL---- 294 (354)
Q Consensus 232 ---------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~---- 294 (354)
+...+.+++.+ +++.++.|+++..++. |++++|+++++|.||+|+|+. |++++++..+..
T Consensus 180 ~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~---p~~~l~~~~gl~~~~g 256 (410)
T 3ef6_A 180 VRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAE---PADQLARQAGLACDRG 256 (410)
T ss_dssp HHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEE---ECCHHHHHTTCCBSSS
T ss_pred hhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCe---ecHHHHHhCCCccCCe
Confidence 11222334444 8899999999986543 888899999999999999999 777776544322
Q ss_pred ----------hceeeeecccch---------------hhHHHHHHHhhhccCCCcccccCCCCCccccCC
Q 018550 295 ----------LWMTIVLGHCTS---------------TFFRQSWHQAFHLLGYHRRLSLSPSLNSRASGL 339 (354)
Q Consensus 295 ----------~~~i~a~GD~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (354)
..+|||+|||+. ....|+...|.++.|....+...|.+++..+++
T Consensus 257 i~vd~~~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~p~~~~~~~~~ 326 (410)
T 3ef6_A 257 VIVDHCGATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKNVSAPQLPVSWTEIAGH 326 (410)
T ss_dssp EECCTTSBCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCCCCCCBCCEEEEEETTE
T ss_pred EEEccCeeECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCCCCCCCCCeeEEEECCc
Confidence 245999999975 234667777888887665444434444444444
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=236.43 Aligned_cols=248 Identities=21% Similarity=0.289 Sum_probs=180.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||++|+++|..|++.|++|+|||+. .+||.|....... .++
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~------------------------------~~~ 62 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTDVE------------------------------NYP 62 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSCBC------------------------------CST
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccchhh------------------------------hcC
Confidence 478999999999999999999999999999975 6787776521100 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEE-EEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV-KSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v-~~~~g~~~~~~~~~d~vIl 160 (354)
.++. .....++.+++.+.+.+++++ +++++ +.+++. . +.|++ .+.++. ++.||+||+
T Consensus 63 ~~~~-------------~~~~~~~~~~l~~~~~~~~v~--~~~~~-v~~i~~-~-~~~~v~~~~~g~----~~~~d~lvi 120 (335)
T 2a87_A 63 GFRN-------------GITGPELMDEMREQALRFGAD--LRMED-VESVSL-H-GPLKSVVTADGQ----THRARAVIL 120 (335)
T ss_dssp TCTT-------------CBCHHHHHHHHHHHHHHTTCE--EECCC-EEEEEC-S-SSSEEEEETTSC----EEEEEEEEE
T ss_pred CCCC-------------CCCHHHHHHHHHHHHHHcCCE--EEEee-EEEEEe-C-CcEEEEEeCCCC----EEEeCEEEE
Confidence 1110 012377888999988888888 88876 888887 4 67888 665553 799999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----ccccc
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHE 236 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~ 236 (354)
||| +.++.|+++|...+.+..++.....+.....+++++|||+|.+|+|+|..|++.+.+|+++++++. +...+
T Consensus 121 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~ 198 (335)
T 2a87_A 121 AMG--AAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLD 198 (335)
T ss_dssp CCC--EEECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHH
T ss_pred CCC--CCccCCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHH
Confidence 999 778888888765543344443322222234679999999999999999999999999999998874 11222
Q ss_pred cC-CCCC-CeEEecceeEEecCCc---EEEc---cC--cEEecCEEEEcccCCCccCcccccCc-hhh------------
Q 018550 237 KQ-PGYD-NMWLHSMVERANEDGT---VVFR---NG--RVVSADVIMHCTGLTGTSTTTLFLKP-MAL------------ 293 (354)
Q Consensus 237 ~l-~~~~-~~~~~~~v~~v~~~~~---v~~~---~g--~~~~~D~vi~a~G~~~~~p~~~~l~~-~~~------------ 293 (354)
++ ++.+ +++.++.|+++..++. +.++ +| +++++|.||+|+|++ |++++++. ...
T Consensus 199 ~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~---p~~~~~~~~l~~~~~G~i~vd~~~ 275 (335)
T 2a87_A 199 RARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHE---PRSGLVREAIDVDPDGYVLVQGRT 275 (335)
T ss_dssp HHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEE---ECCTTTBTTBCBCTTSCBCCSTTS
T ss_pred HHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCc---cChhHhhcccccCCCccEEeCCCC
Confidence 32 3344 8888999999986653 6665 35 578999999999999 66666541 111
Q ss_pred ---hhceeeeecccchh
Q 018550 294 ---LLWMTIVLGHCTST 307 (354)
Q Consensus 294 ---~~~~i~a~GD~~~~ 307 (354)
...+|||+|||+..
T Consensus 276 ~~t~~~~iya~GD~~~~ 292 (335)
T 2a87_A 276 TSTSLPGVFAAGDLVDR 292 (335)
T ss_dssp SBCSSTTEEECGGGTCC
T ss_pred CccCCCCEEEeeecCCc
Confidence 12359999999874
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=233.33 Aligned_cols=250 Identities=15% Similarity=0.177 Sum_probs=173.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
+||+||||||||++||..|++.|++|+|||++ .+||.+..+ | + .+..
T Consensus 7 yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~~~~~---------------------~-------~----~~~~ 53 (304)
T 4fk1_A 7 IDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNRVTQN---------------------S-------H----GFIT 53 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGGGSSC---------------------B-------C----CSTT
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCeeeee---------------------c-------C----CccC
Confidence 79999999999999999999999999999996 456554331 0 0 0001
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
.+. ....++.+...+.+.+++.. ...+..+..+...+.+.+++.+.++. ++.||+||+||
T Consensus 54 ~~~--------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~g~----~~~a~~liiAT 113 (304)
T 4fk1_A 54 RDG--------------IKPEEFKEIGLNEVMKYPSV--HYYEKTVVMITKQSTGLFEIVTKDHT----KYLAERVLLAT 113 (304)
T ss_dssp CTT--------------BCHHHHHHHHHHHHTTSTTE--EEEECCEEEEEECTTSCEEEEETTCC----EEEEEEEEECC
T ss_pred CCC--------------CCHHHHHHHHHHHHHhcCCE--EEEeeEEEEeeecCCCcEEEEECCCC----EEEeCEEEEcc
Confidence 110 11256666666555555544 34556677777655477888888775 89999999999
Q ss_pred CCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCC-CHHHHHHHHhccCCEEEEEEecCC--ccccccCC
Q 018550 163 GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSVA--DETHEKQP 239 (354)
Q Consensus 163 G~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~-~g~e~a~~l~~~g~~v~~~~r~~~--~~~~~~l~ 239 (354)
| +.|+.|+++|.+.+.+..+..+...+....++++++|||||. .++|+|..+.+.+++|+++.+.+. +...+++.
T Consensus 114 G--s~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~~~~~~l~ 191 (304)
T 4fk1_A 114 G--MQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDELS 191 (304)
T ss_dssp C--CEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCHHHHHHHH
T ss_pred C--CccccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccchhhhhhhhh
Confidence 9 899999999977655555554444444445678888888886 567888888889999999988765 33344455
Q ss_pred CCC-CeEEecceeEEecCC-c---EEEccCcEEecCEEEEcccCCCccCcccccCchhhh----------------hcee
Q 018550 240 GYD-NMWLHSMVERANEDG-T---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL----------------LWMT 298 (354)
Q Consensus 240 ~~~-~~~~~~~v~~v~~~~-~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~----------------~~~i 298 (354)
+.+ .++. ..++.+..++ . |.+.+|+++++|.+++++|.. |+++++...+.. ..+|
T Consensus 192 ~~g~~~~~-~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~---~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~I 267 (304)
T 4fk1_A 192 NKNIPVIT-ESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFF---RPNQFIEQLGCELQSNGTFVIDDFGRTSEKNI 267 (304)
T ss_dssp TTTCCEEC-SCEEEEESGGGCCCEEEETTSCEECCCEEEECCEEE---CSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTE
T ss_pred ccceeEee-eeEEEeecCCCeeeeeeccccceeeecceeeeeccc---cCChhhhhcCeEECCCCCEEECcCCccCCCCE
Confidence 555 5544 4567776433 2 788999999999988888877 444555443322 2349
Q ss_pred eeecccchhhHHH
Q 018550 299 IVLGHCTSTFFRQ 311 (354)
Q Consensus 299 ~a~GD~~~~~~~~ 311 (354)
||+|||+.....|
T Consensus 268 yA~GDv~~~~~~~ 280 (304)
T 4fk1_A 268 YLAGETTTQGPSS 280 (304)
T ss_dssp EECSHHHHTSCCC
T ss_pred EEEeccCCCcchH
Confidence 9999999754433
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-32 Score=251.02 Aligned_cols=283 Identities=15% Similarity=0.143 Sum_probs=186.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchh-cccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRV-NLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 79 (354)
+++|+|||||++|+++|..|++.|++|+|||+++.+||.|.+. +|.|.+.++.... +..+.. ... .++
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~--------g~~Psk~l~~~~~~~~~~~~~~~~--~~g 75 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNV--------GCIPSKALLNNSHYYHMAHGTDFA--SRG 75 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHSSHHH--HTT
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccccc--------CccchHHHHHHHHHHHHhhhhhHh--hCc
Confidence 4789999999999999999999999999999988999999873 5665543332211 111110 000 001
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
+. .. ....++..+. ..+.+.+++.+++ ++.+.. ..+ +. +.+.+.+.++.
T Consensus 76 ~~-----~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~-~~~--~~-~~~~v~~~~gg- 135 (474)
T 1zmd_A 76 IE-----MS--------EVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVV--HVNGYG-KIT--GK-NQVTATKADGG- 135 (474)
T ss_dssp EE-----ES--------CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEE-EEE--ET-TEEEEECTTSC-
T ss_pred cc-----cC--------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEE-EEe--cC-CEEEEEecCCC-
Confidence 10 00 0000112222 2234555667887 777653 333 33 56667655421
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| +.|+.|+++|.+.. ..+++.+...... .+++++|||+|++|+|+|..|++.|.+|+++++
T Consensus 136 -~~~~~~d~lViAtG--s~p~~p~i~g~~~~--~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~ 209 (474)
T 1zmd_A 136 -TQVIDTKNILIATG--SEVTPFPGITIDED--TIVSSTGALSLKK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEF 209 (474)
T ss_dssp -EEEEEEEEEEECCC--EEECCCTTCCCCSS--SEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred -cEEEEeCEEEECCC--CCCCCCCCCCCCcC--cEEcHHHHhhccc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence 24799999999999 78888888886541 2444443333222 469999999999999999999999999999998
Q ss_pred cCC--c---------cccccCCCCC-CeEEecceeEEecCC-c-EEE-------ccCcEEecCEEEEcccCCCccCcccc
Q 018550 229 SVA--D---------ETHEKQPGYD-NMWLHSMVERANEDG-T-VVF-------RNGRVVSADVIMHCTGLTGTSTTTLF 287 (354)
Q Consensus 229 ~~~--~---------~~~~~l~~~~-~~~~~~~v~~v~~~~-~-v~~-------~~g~~~~~D~vi~a~G~~~~~p~~~~ 287 (354)
.+. . ...+.+++.+ +++.++.|+++..++ . +.+ .+++++++|.||+|+|++ |++++
T Consensus 210 ~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~---p~~~~ 286 (474)
T 1zmd_A 210 LGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRR---PFTKN 286 (474)
T ss_dssp SSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEE---ECCTT
T ss_pred cCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCC---cCCCc
Confidence 764 1 1122233444 889999999998543 2 332 245789999999999999 77765
Q ss_pred c--Cchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 288 L--KPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 288 l--~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
+ +..+.. ..+|||+|||+.. ...|+...+.++.+..
T Consensus 287 l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 346 (474)
T 1zmd_A 287 LGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGA 346 (474)
T ss_dssp SSHHHHTCCCCTTSCCCCCTTCBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTCC
T ss_pred CCchhcCCccCCCCCEEECcCCccCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCCC
Confidence 3 222211 2349999999873 3567777888887654
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=248.60 Aligned_cols=287 Identities=16% Similarity=0.184 Sum_probs=188.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
|+++|+|||||++|+++|..|++. |.+|+|||+++ +||+|.+. +|.|.+.++..............
T Consensus 1 M~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~--------g~~psk~l~~~a~~~~~~~~~~~-- 69 (499)
T 1xdi_A 1 MVTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLD--------DCVPSKTFIASTGLRTELRRAPH-- 69 (499)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHT--------SHHHHHHHHHHHHHHHHHTTTTT--
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCc--------CccchHHHHHHHHHHHHHHHHHh--
Confidence 678999999999999999999999 99999999987 99998873 55554433332211111111110
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhCCcceEEeceEEEEEEEe---CCCcEEEEE
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEE-----------VLRYLQNFAREFGVDQVVRLHTEVLNARLV---ESNKWKVKS 143 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~---~~~~~~v~~ 143 (354)
+++..+ .. ....++.. +..++.+.+++.+++ ++.+. +..++.. +++.+.+..
T Consensus 70 ~g~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~-~~~i~~~~~~~~~~~~V~~ 135 (499)
T 1xdi_A 70 LGFHID---FD--------DAKISLPQIHARVKTLAAAQSADITAQLLSMGVQ--VIAGR-GELIDSTPGLARHRIKATA 135 (499)
T ss_dssp TTBC-----------------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESE-EEECCSSSCCSSEEEEEEC
T ss_pred CCCccc---cC--------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEecCcccCCCCEEEEEe
Confidence 011000 00 00011232 333345666677887 77764 5555431 002344444
Q ss_pred eecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEE
Q 018550 144 RKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEV 223 (354)
Q Consensus 144 ~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v 223 (354)
.++ ....+.||+||+||| +.|+.|+++|.+.. ..+++....... ..+++++|||+|.+|+|+|..+.+.|.+|
T Consensus 136 ~~g--~~~~~~~d~lviATG--s~p~~p~i~g~~~~--~v~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~g~~V 208 (499)
T 1xdi_A 136 ADG--STSEHEADVVLVATG--ASPRILPSAQPDGE--RILTWRQLYDLD-ALPDHLIVVGSGVTGAEFVDAYTELGVPV 208 (499)
T ss_dssp TTS--CEEEEEESEEEECCC--EEECCCGGGCCCSS--SEEEGGGGGGCS-SCCSSEEEESCSHHHHHHHHHHHHTTCCE
T ss_pred CCC--cEEEEEeCEEEEcCC--CCCCCCCCCCCCcC--cEEehhHhhhhh-ccCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 333 123789999999999 88888888886542 234444433322 25689999999999999999999999999
Q ss_pred EEEEecCC----------ccccccCCCCC-CeEEecceeEEecCC-c--EEEccCcEEecCEEEEcccCCCccCcccc--
Q 018550 224 HIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGLTGTSTTTLF-- 287 (354)
Q Consensus 224 ~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~-- 287 (354)
+++.+.+. ....+.+++.+ +++.++.|+++..++ . +.+.+|+++++|.||+|+|++ |++++
T Consensus 209 tlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~---p~~~~l~ 285 (499)
T 1xdi_A 209 TVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSV---PNTSGLG 285 (499)
T ss_dssp EEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEE---ECCSSSC
T ss_pred EEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCC---cCCCcCC
Confidence 99999864 11222334445 889999999998654 2 455677899999999999999 77766
Q ss_pred cCchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 288 LKPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 288 l~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
++..+.. ..+|||+|||+.. ...|+...+.++.+.
T Consensus 286 l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 342 (499)
T 1xdi_A 286 LERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGE 342 (499)
T ss_dssp TTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred chhcCceECCCCCEEECCCcccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 4332221 2349999999873 356777778888775
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-32 Score=250.42 Aligned_cols=287 Identities=16% Similarity=0.160 Sum_probs=188.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhcccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMG 79 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (354)
|+++|+|||||++|+++|..|++.|++|+|||+++.+||+|.+. +|.|.+.++... .+..+...... ++
T Consensus 1 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~--------g~~psk~l~~~~~~~~~~~~~~~~--~g 70 (468)
T 2qae_A 1 NPYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNV--------GCIPSKALLHATHLYHDAHANFAR--YG 70 (468)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHTHHH--HT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCc--------CcHhHHHHHHHHHHHHHHHHHHHh--cC
Confidence 57899999999999999999999999999999988999999873 555544333221 11111110000 00
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEE-----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
+. ... ....++.. +...+.+.+++.+++ ++.++.+ .+ +. +.+.+...+|.
T Consensus 71 ~~---~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~--~~~g~~~-~i--~~-~~~~v~~~~G~- 131 (468)
T 2qae_A 71 LM---GGE---------GVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVT--YYKGEGS-FE--TA-HSIRVNGLDGK- 131 (468)
T ss_dssp EE---CGG---------GCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEEEEEE-EE--ET-TEEEEEETTSC-
T ss_pred cc---cCC---------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEE-Ee--eC-CEEEEEecCCc-
Confidence 00 000 00001122 223345556667887 7765543 33 33 55666654442
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| +.|+.|+++|.+.. .++++.+..... ..+++++|||+|.+|+|+|..|++.|.+|+++++
T Consensus 132 -~~~~~~d~lviAtG--~~p~~p~~~g~~~~--~v~t~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~ 205 (468)
T 2qae_A 132 -QEMLETKKTIIATG--SEPTELPFLPFDEK--VVLSSTGALALP-RVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEF 205 (468)
T ss_dssp -EEEEEEEEEEECCC--EEECCBTTBCCCSS--SEECHHHHHTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred -eEEEEcCEEEECCC--CCcCCCCCCCCCcC--ceechHHHhhcc-cCCceEEEECCCHHHHHHHHHHHHhCCEEEEEec
Confidence 24799999999999 78888888776531 234433332222 2579999999999999999999999999999999
Q ss_pred cCC----------ccccccC-CCCC-CeEEecceeEEecCC-c--EEEc--cC--cEEecCEEEEcccCCCccCccccc-
Q 018550 229 SVA----------DETHEKQ-PGYD-NMWLHSMVERANEDG-T--VVFR--NG--RVVSADVIMHCTGLTGTSTTTLFL- 288 (354)
Q Consensus 229 ~~~----------~~~~~~l-~~~~-~~~~~~~v~~v~~~~-~--v~~~--~g--~~~~~D~vi~a~G~~~~~p~~~~l- 288 (354)
.+. +...+.+ ++.+ +++.++.|++++.++ . +.++ +| +++++|.||+|+|++ |+++++
T Consensus 206 ~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~---p~~~~l~ 282 (468)
T 2qae_A 206 APRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRR---PFTGGLG 282 (468)
T ss_dssp SSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEE---ECCTTSC
T ss_pred CCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcc---cCCCCCC
Confidence 864 1123334 4445 889999999998654 2 4554 66 679999999999999 777663
Q ss_pred -Cchhhh----------------hceeeeecccch-h------hHHHHHHHhhhccCCCcc
Q 018550 289 -KPMALL----------------LWMTIVLGHCTS-T------FFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 289 -~~~~~~----------------~~~i~a~GD~~~-~------~~~~~~~~~~~~~~~~~~ 325 (354)
+..+.. ..+|||+|||+. . ...|+...+.++.+....
T Consensus 283 l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 343 (468)
T 2qae_A 283 LDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGKPGH 343 (468)
T ss_dssp HHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTCCCC
T ss_pred chhcCCccCCCCCEeECCCcccCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCCCcc
Confidence 222111 234999999988 2 356777778888775433
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=233.46 Aligned_cols=248 Identities=17% Similarity=0.232 Sum_probs=179.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEee----CCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK----GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~----~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
++|+|||||++|+++|..|++.|++|+|||+ ...+|+.+..... ..
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~------------------------------~~ 58 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTD------------------------------VE 58 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSE------------------------------EC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccc------------------------------cc
Confidence 6899999999999999999999999999998 4455655544210 00
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
.++.++. .....++.+++.+.+.+.+++ ++.++ |.+++..+ +.|++++ ++ .++.+|+|
T Consensus 59 ~~~~~~~-------------~~~~~~~~~~l~~~~~~~gv~--~~~~~-v~~i~~~~-~~~~v~~-~~----~~~~~~~v 116 (333)
T 1vdc_A 59 NFPGFPE-------------GILGVELTDKFRKQSERFGTT--IFTET-VTKVDFSS-KPFKLFT-DS----KAILADAV 116 (333)
T ss_dssp CSTTCTT-------------CEEHHHHHHHHHHHHHHTTCE--EECCC-CCEEECSS-SSEEEEC-SS----EEEEEEEE
T ss_pred cCCCCcc-------------CCCHHHHHHHHHHHHHHCCCE--EEEeE-EEEEEEcC-CEEEEEE-CC----cEEEcCEE
Confidence 0111110 012367888898888888988 88876 88888766 6788877 43 37999999
Q ss_pred EEeeCCCCCcccCCCCCCCC----CCcceeecccCCCCCC--CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-
Q 018550 159 VVCNGHFSVPRLAQVPGIDS----WPGKQMHSHNYRIPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~~~----~~~~~~~~~~~~~~~~--~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~- 231 (354)
|+||| +.++.|.++|... +.+..++.....+... ..+++++|||+|.+|+|+|..|.+.+.+|+++++++.
T Consensus 117 v~A~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 194 (333)
T 1vdc_A 117 ILAIG--AVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF 194 (333)
T ss_dssp EECCC--EEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred EECCC--CCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence 99999 6788888888765 3333444332222222 4679999999999999999999999999999999875
Q ss_pred ---ccccccC-CCCC-CeEEecceeEEecCC---c---EEEc---cC--cEEecCEEEEcccCCCccCcccccCc-hh--
Q 018550 232 ---DETHEKQ-PGYD-NMWLHSMVERANEDG---T---VVFR---NG--RVVSADVIMHCTGLTGTSTTTLFLKP-MA-- 292 (354)
Q Consensus 232 ---~~~~~~l-~~~~-~~~~~~~v~~v~~~~---~---v~~~---~g--~~~~~D~vi~a~G~~~~~p~~~~l~~-~~-- 292 (354)
+...+++ ++.+ +++.++.|+++..++ . |.++ +| +++++|.||+|+|++ |++++++. ..
T Consensus 195 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~---p~~~~~~~~l~~~ 271 (333)
T 1vdc_A 195 RASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHE---PATKFLDGGVELD 271 (333)
T ss_dssp CSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEE---ESCGGGTTSSCBC
T ss_pred CccHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCc---cchHHhhcccccc
Confidence 1222233 4445 888899999998654 2 6665 35 578999999999999 66666541 11
Q ss_pred -------------hhhceeeeecccchh
Q 018550 293 -------------LLLWMTIVLGHCTST 307 (354)
Q Consensus 293 -------------~~~~~i~a~GD~~~~ 307 (354)
....+|||+|||+..
T Consensus 272 ~~G~i~vd~~~~~t~~~~vya~GD~~~~ 299 (333)
T 1vdc_A 272 SDGYVVTKPGTTQTSVPGVFAAGDVQDK 299 (333)
T ss_dssp TTSCBCCCTTSCBCSSTTEEECGGGGCS
T ss_pred CCCCEEechhhcccCCCCEEEeeeccCC
Confidence 012359999999874
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-32 Score=250.25 Aligned_cols=273 Identities=17% Similarity=0.169 Sum_probs=183.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
+||+|||||++|+++|..|++.|.+|+|||+.+.+||+|.+. +|.|.+.+.............+.
T Consensus 5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~--------gciPsk~l~~~a~~~~~~~~~~~------- 69 (466)
T 3l8k_A 5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYS--------GCVPSKTVREVIQTAWRLTNIAN------- 69 (466)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccccc--------CCCchHHHHHHHHHHHHHHhccc-------
Confidence 699999999999999999999999999999888999999874 66665544333222111111110
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHH------------HHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVL------------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.. ...++..+. .++.....+.+++ +.. .++..++ . +.+.+...++. .
T Consensus 70 ~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~-g~v~~id--~-~~~~V~~~~g~--~ 128 (466)
T 3l8k_A 70 VK-------------IPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLT--FYK-GYVKIKD--P-THVIVKTDEGK--E 128 (466)
T ss_dssp SC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTEE--EES-EEEEEEE--T-TEEEEEETTSC--E
T ss_pred CC-------------CCcCHHHHHHHHHhheeccccchHHHHHHhCCCE--EEE-eEEEEec--C-CeEEEEcCCCc--E
Confidence 00 001112222 2222222333444 544 3566665 3 56777766553 2
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCC---CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEE
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR---IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~---~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~ 227 (354)
.++.||+||+||| +.|+.|+++|.+. ..+...+. ......+++++|||+|++|+|+|..|++.|.+|+++.
T Consensus 129 ~~~~~d~lviAtG--~~p~~p~i~G~~~----~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~ 202 (466)
T 3l8k_A 129 IEAETRYMIIASG--AETAKLRLPGVEY----CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIE 202 (466)
T ss_dssp EEEEEEEEEECCC--EEECCCCCTTGGG----SBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEecCEEEECCC--CCccCCCCCCccc----eEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence 2399999999999 8999999998762 22222211 1122357999999999999999999999999999999
Q ss_pred ecCC------cc-cc----ccCCCCCCeEEecceeEEecCC--c--EEEc--cCc--EEecCEEEEcccCCCccCcccc-
Q 018550 228 RSVA------DE-TH----EKQPGYDNMWLHSMVERANEDG--T--VVFR--NGR--VVSADVIMHCTGLTGTSTTTLF- 287 (354)
Q Consensus 228 r~~~------~~-~~----~~l~~~~~~~~~~~v~~v~~~~--~--v~~~--~g~--~~~~D~vi~a~G~~~~~p~~~~- 287 (354)
+.+. +. .. +.+. .+++.++.|+++..++ . +.++ +|+ ++++|.|++|+|++ |++++
T Consensus 203 ~~~~~l~~~~d~~~~~~l~~~l~--v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~---p~~~l~ 277 (466)
T 3l8k_A 203 MLDRALITLEDQDIVNTLLSILK--LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRR---PVIPEG 277 (466)
T ss_dssp SSSSSCTTSCCHHHHHHHHHHHC--CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEE---ECCCTT
T ss_pred eCCcCCCCCCCHHHHHHHHhcCE--EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCC---cccccc
Confidence 9764 11 11 1112 7888899999998532 2 5566 565 89999999999999 66663
Q ss_pred cCchhhh---------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 288 LKPMALL---------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 288 l~~~~~~---------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
+...+.. ..+|||+|||+.. ...|+...+.++.+.
T Consensus 278 l~~~gl~~~~~Gi~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 278 AREIGLSISKTGIVVDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp TGGGTCCBCSSSBCCCTTCBCSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred hhhcCceeCCCCEeECCCccCCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence 3332221 2459999999973 456777778888765
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=243.48 Aligned_cols=250 Identities=20% Similarity=0.268 Sum_probs=188.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+++|..|++.|++|+++|+ .+||.|....... .+.
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~~~~------------------------------~~~ 259 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTVDIE------------------------------NYI 259 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCSCBC------------------------------CBT
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccccccccc------------------------------ccC
Confidence 46899999999999999999999999999986 5788876521100 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC--CCcEEEEEeecCCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
.++ +....++..++.+.+.+++++ ++.+++|++++.+. ++.|.+++.++. ++.||+||
T Consensus 260 ~~~--------------~~~~~~l~~~l~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~V~~~~g~----~~~~d~vV 319 (521)
T 1hyu_A 260 SVP--------------KTEGQKLAGALKAHVSDYDVD--VIDSQSASKLVPAATEGGLHQIETASGA----VLKARSII 319 (521)
T ss_dssp TBS--------------SBCHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTSCEEEEETTSC----EEEEEEEE
T ss_pred CCC--------------CCCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEeccCCCceEEEEECCCC----EEEcCEEE
Confidence 111 123378888999988888888 89999999998642 147888887764 79999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----cccc
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH 235 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~ 235 (354)
+||| +.++.|.++|...+.+..++.+...+...+.+++++|||+|.+|+|+|..|++.+.+|+++++.+. ....
T Consensus 320 lAtG--~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~ 397 (521)
T 1hyu_A 320 IATG--AKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQ 397 (521)
T ss_dssp ECCC--EEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHH
T ss_pred ECCC--CCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHH
Confidence 9999 778888899987766555555544444445789999999999999999999999999999999775 1223
Q ss_pred ccCCC-CC-CeEEecceeEEecCC-c---EEEcc---C--cEEecCEEEEcccCCCccCcccccCchhh-----------
Q 018550 236 EKQPG-YD-NMWLHSMVERANEDG-T---VVFRN---G--RVVSADVIMHCTGLTGTSTTTLFLKPMAL----------- 293 (354)
Q Consensus 236 ~~l~~-~~-~~~~~~~v~~v~~~~-~---v~~~~---g--~~~~~D~vi~a~G~~~~~p~~~~l~~~~~----------- 293 (354)
+++.+ .+ +++.++.++++..++ + +++.+ | .++++|.|++|+|+. ||++++.+...
T Consensus 398 ~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~---pn~~~l~~~l~~~~~G~I~Vd~ 474 (521)
T 1hyu_A 398 DKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLL---PNTHWLEGALERNRMGEIIIDA 474 (521)
T ss_dssp HHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEE---ESCGGGTTTSCBCTTSCBCCCT
T ss_pred HHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCC---CCchHHhhhhccCCCCcEEeCC
Confidence 34444 34 888899999998653 2 55654 5 368999999999999 77777754211
Q ss_pred ----hhceeeeecccchhh
Q 018550 294 ----LLWMTIVLGHCTSTF 308 (354)
Q Consensus 294 ----~~~~i~a~GD~~~~~ 308 (354)
...+|||+|||+...
T Consensus 475 ~~~ts~p~VfA~GD~~~~~ 493 (521)
T 1hyu_A 475 KCETSVKGVFAAGDCTTVP 493 (521)
T ss_dssp TCBCSSTTEEECSTTBCCS
T ss_pred CCCCCCCCEEEeecccCCC
Confidence 013599999999743
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-32 Score=249.79 Aligned_cols=290 Identities=16% Similarity=0.176 Sum_probs=190.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (354)
+++|+|||||++|+++|..|++.|++|+|||+++.+||.|... +|.|.+.+.... .+..+...........
T Consensus 6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~--------g~~p~k~l~~~~~~~~~~~~~~~~~g~~~ 77 (470)
T 1dxl_A 6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV--------GCIPSKALLHSSHMYHEAKHSFANHGVKV 77 (470)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH--------SHHHHHHHHHHHHHHHHHHHTHHHHTEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCc--------CccchHHHHHHHHHHHHHHHHHHhcCccc
Confidence 5799999999999999999999999999999988899999763 555544332211 1111111000000000
Q ss_pred c--CCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 81 Q--AYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
. .+++.. .+... ..+...+.+.+++.+++ ++.++.+. + +. +.+.+.+.+|. ..++.
T Consensus 78 ~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~--~~-~~~~v~~~~G~--~~~i~ 139 (470)
T 1dxl_A 78 SNVEIDLAA----------MMGQKDKAVSNLTRGIEGLFKKNKVT--YVKGYGKF-V--SP-SEISVDTIEGE--NTVVK 139 (470)
T ss_dssp SCEEECHHH----------HHHHHHHHHHHHHHHHHHHHHHHTCE--EEESCEEE-E--ET-TEEEECCSSSC--CEEEE
T ss_pred CCCccCHHH----------HHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE-e--cC-CEEEEEeCCCc--eEEEE
Confidence 0 000000 00000 12333345566667888 88876553 3 33 56666654442 24799
Q ss_pred eCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---
Q 018550 155 FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--- 231 (354)
||+||+||| +.|+.|+++|.+.. ..++........ ..+++++|||+|++|+|+|..|++.|.+|+++++.+.
T Consensus 140 ~d~lIiAtG--s~p~~p~~~g~~~~--~v~~~~~~~~~~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 214 (470)
T 1dxl_A 140 GKHIIIATG--SDVKSLPGVTIDEK--KIVSSTGALALS-EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP 214 (470)
T ss_dssp CSEEEECCC--EEECCBTTBCCCSS--SEECHHHHTTCS-SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred cCEEEECCC--CCCCCCCCCCCCcc--cEEeHHHhhhhh-hcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence 999999999 78888888776431 234433333322 2579999999999999999999999999999999864
Q ss_pred -------ccccccCCCCC-CeEEecceeEEecCC-c--EEEc---cC--cEEecCEEEEcccCCCccCcccc--cCchhh
Q 018550 232 -------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFR---NG--RVVSADVIMHCTGLTGTSTTTLF--LKPMAL 293 (354)
Q Consensus 232 -------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~---~g--~~~~~D~vi~a~G~~~~~p~~~~--l~~~~~ 293 (354)
+...+.+++.+ +++.++.|+++..++ . +.++ +| +++++|.||+|+|++ ||+++ ++..+.
T Consensus 215 ~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~---p~~~~l~~~~~gl 291 (470)
T 1dxl_A 215 TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRT---PFTSGLNLDKIGV 291 (470)
T ss_dssp TSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEE---ECCTTSCCTTTTC
T ss_pred cccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCC---cCCCCCCchhcCC
Confidence 11222334444 899999999998654 2 4444 45 679999999999999 77766 333222
Q ss_pred h----------------hceeeeecccchh------hHHHHHHHhhhccCCCcc
Q 018550 294 L----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 294 ~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~ 325 (354)
. ..+|||+|||+.. ...|+...+.++.+....
T Consensus 292 ~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~ 345 (470)
T 1dxl_A 292 ETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGH 345 (470)
T ss_dssp CBCSSSCBCCCTTCBCSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccCCCCCEeECcCCccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCcC
Confidence 1 2349999999873 356777778888775434
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=248.36 Aligned_cols=283 Identities=18% Similarity=0.187 Sum_probs=184.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC---C------CccceeecCCCCCCCCCCCCCCCCcccccccccchhc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG---E------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~---~------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (354)
.+||+|||||++|+++|..|++.|.+|+|||+. + .+||+|.+. +|.|.+.+............
T Consensus 9 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~--------gciPsk~l~~~~~~~~~~~~ 80 (483)
T 3dgh_A 9 DYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNV--------GCIPKKLMHQASLLGEAVHE 80 (483)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHH--------SHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeeccc--------CchhhHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999942 1 389999874 77776654443322222111
Q ss_pred cccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHH-----------HHhCCcceEEeceEEEEEEEeCCCcEEE
Q 018550 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-----------REFGVDQVVRLHTEVLNARLVESNKWKV 141 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~v~~~~~v~~i~~~~~~~~~v 141 (354)
... +.+... .....++..+.++..... ...+++ +.. .....++ . ..+.+
T Consensus 81 ~~~-------~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~a~~~~--~-~~v~v 140 (483)
T 3dgh_A 81 AAA-------YGWNVD-------DKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVE--YIN-GLGSFVD--S-HTLLA 140 (483)
T ss_dssp HHH-------TTBCCC-------CCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEC-SEEEEEE--T-TEEEE
T ss_pred HHh-------cCcccC-------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-eEEEEcc--C-CEEEE
Confidence 111 111000 001123344444443332 334555 443 3333332 2 45555
Q ss_pred EEeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCC
Q 018550 142 KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221 (354)
Q Consensus 142 ~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~ 221 (354)
...++. .++.||+||+||| +.|+.|+++|.... .+++...... ...+++++|||+|++|+|+|..|++.|.
T Consensus 141 ~~~~g~---~~~~~d~lviATG--s~p~~p~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~ 211 (483)
T 3dgh_A 141 KLKSGE---RTITAQTFVIAVG--GRPRYPDIPGAVEY---GITSDDLFSL-DREPGKTLVVGAGYIGLECAGFLKGLGY 211 (483)
T ss_dssp ECTTCC---EEEEEEEEEECCC--EEECCCSSTTHHHH---CBCHHHHTTC-SSCCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred EeCCCe---EEEEcCEEEEeCC--CCcCCCCCCCcccc---cCcHHHHhhh-hhcCCcEEEECCCHHHHHHHHHHHHcCC
Confidence 554432 4799999999999 89999999887542 2233222222 2356899999999999999999999999
Q ss_pred EEEEEEecCC---------ccccccCCCCC-CeEEecceeEEecC--Cc--EEEccCc-----EEecCEEEEcccCCCcc
Q 018550 222 EVHIASRSVA---------DETHEKQPGYD-NMWLHSMVERANED--GT--VVFRNGR-----VVSADVIMHCTGLTGTS 282 (354)
Q Consensus 222 ~v~~~~r~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~--~~--v~~~~g~-----~~~~D~vi~a~G~~~~~ 282 (354)
+|+++.+... +...+.+++.+ +++.++.|+++..+ +. |++.++. ++++|.|++|+|++
T Consensus 212 ~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~--- 288 (483)
T 3dgh_A 212 EPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRK--- 288 (483)
T ss_dssp EEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEE---
T ss_pred EEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccc---
Confidence 9999998542 11223344445 89999999999753 32 6666653 78999999999999
Q ss_pred Cccccc--Cchhh---------------hhceeeeecccch-------hhHHHHHHHhhhccCCCc
Q 018550 283 TTTLFL--KPMAL---------------LLWMTIVLGHCTS-------TFFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 283 p~~~~l--~~~~~---------------~~~~i~a~GD~~~-------~~~~~~~~~~~~~~~~~~ 324 (354)
|+++++ ...+. ...+|||+|||+. ....|+...+.++.+...
T Consensus 289 p~~~~l~l~~~gl~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~ 354 (483)
T 3dgh_A 289 GLVDDLNLPNAGVTVQKDKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGST 354 (483)
T ss_dssp ECCGGGTGGGTTCCCBTTBBCCCTTCBCSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSCCC
T ss_pred cCcCcCCchhcCccccCCEEEECcCCccCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCCCC
Confidence 777665 22211 1244999999973 235667777888876543
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=249.31 Aligned_cols=284 Identities=16% Similarity=0.193 Sum_probs=184.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEee--------CCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK--------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~--------~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
++||+|||||++|+++|..|++.|.+|+|||+ ...+||+|.+. +|.|.+.+.............
T Consensus 6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~--------gciPsk~l~~~~~~~~~~~~~ 77 (488)
T 3dgz_A 6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNV--------GCIPKKLMHQAALLGGMIRDA 77 (488)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHH--------SHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeeccc--------CCcccHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999997 55789999874 787776554443322222211
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHH-----------HHHhCCcceEEeceEEEEEEEeCCCcEEEE
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNF-----------AREFGVDQVVRLHTEVLNARLVESNKWKVK 142 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~ 142 (354)
.. +.+... ....+++..+.++..++ ....+++ +. ..++..++ . ..+.+.
T Consensus 78 ~~-------~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~i-~g~~~~~~--~-~~v~v~ 137 (488)
T 3dgz_A 78 HH-------YGWEVA-------QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVK--YF-NIKASFVD--E-HTVRGV 137 (488)
T ss_dssp HH-------TTCCCC-------SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EE-CCEEEESS--S-SEEEEE
T ss_pred Hh-------cCcccC-------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EE-EEEEEEcc--C-CeEEEE
Confidence 11 111100 01122334444443332 3334555 43 34443332 1 344444
Q ss_pred EeecCCceEEEEeCEEEEeeCCCCCcccCC-CCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCC
Q 018550 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221 (354)
Q Consensus 143 ~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~ 221 (354)
..++ ...++.||+||+||| +.|+.|+ ++|... ..+++...... ...+++++|||+|++|+|+|..|++.|.
T Consensus 138 ~~~g--~~~~~~~d~lViATG--s~p~~p~~i~G~~~---~~~~~~~~~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~ 209 (488)
T 3dgz_A 138 DKGG--KATLLSAEHIVIATG--GRPRYPTQVKGALE---YGITSDDIFWL-KESPGKTLVVGASYVALECAGFLTGIGL 209 (488)
T ss_dssp CTTS--CEEEEEEEEEEECCC--EEECCCSSCBTHHH---HCBCHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred eCCC--ceEEEECCEEEEcCC--CCCCCCCCCCCccc---ccCcHHHHHhh-hhcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 4333 235899999999999 8999998 888643 12233222222 2356889999999999999999999999
Q ss_pred EEEEEEecCC---------ccccccCCCCC-CeEEecceeEEec--CCc--EEEcc---Cc--EEecCEEEEcccCCCcc
Q 018550 222 EVHIASRSVA---------DETHEKQPGYD-NMWLHSMVERANE--DGT--VVFRN---GR--VVSADVIMHCTGLTGTS 282 (354)
Q Consensus 222 ~v~~~~r~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~--~~~--v~~~~---g~--~~~~D~vi~a~G~~~~~ 282 (354)
+|+++.+... +...+.+++.+ +++.++.++++.. ++. +++.+ |+ ++++|.||+|+|++
T Consensus 210 ~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~--- 286 (488)
T 3dgz_A 210 DTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRV--- 286 (488)
T ss_dssp CEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEE---
T ss_pred ceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCC---
Confidence 9999998653 11223344444 8899999999874 232 55544 44 47899999999999
Q ss_pred Cccccc--Cchhhh-----------------hceeeeecccch-------hhHHHHHHHhhhccCCCc
Q 018550 283 TTTLFL--KPMALL-----------------LWMTIVLGHCTS-------TFFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 283 p~~~~l--~~~~~~-----------------~~~i~a~GD~~~-------~~~~~~~~~~~~~~~~~~ 324 (354)
|+++++ ...+.. ..+|||+|||+. ....|+...+.++.+...
T Consensus 287 p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~ 354 (488)
T 3dgz_A 287 PETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSS 354 (488)
T ss_dssp ESCGGGTGGGGTCCBCSSSCCBCCCTTSBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSCCC
T ss_pred cccCcCCccccCcEecCCCCeEeECCCCccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCCCC
Confidence 777663 222111 134999999973 235667777888876543
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=249.83 Aligned_cols=285 Identities=17% Similarity=0.166 Sum_probs=184.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (354)
+++|+|||||++|+++|..|++.|++|+|||+++.+||.|.+. +|.|.+.++... .+..+..........+
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~--------g~~psk~l~~~~~~~~~~~~~~~~~gi~~ 76 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNV--------GCIPSKALLNNSHLFHQMHTEAQKRGIDV 76 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHTSGGGTEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCcccee--------ccHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3689999999999999999999999999999988999999873 565554333221 2222221111111100
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHH-----------HHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEV-----------LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
. .. ...+...+ ...+.+.+++.+++ ++.++.+.. +. +.+.+.+.++..
T Consensus 77 --~--~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~~---~~-~~v~V~~~~G~~- 135 (478)
T 1v59_A 77 --N--GD----------IKINVANFQKAKDDAVKQLTGGIELLFKKNKVT--YYKGNGSFE---DE-TKIRVTPVDGLE- 135 (478)
T ss_dssp --C--SC----------EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEEEES---SS-SEEEEECCTTCT-
T ss_pred --C--CC----------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEc---cC-CeEEEEecCCCc-
Confidence 0 00 00011222 22244455667887 777776542 33 566776655421
Q ss_pred eEE------EEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEE
Q 018550 150 VEE------ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEV 223 (354)
Q Consensus 150 ~~~------~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v 223 (354)
.+ +.||+||+||| +.|+ .++|.+.......++........ .+++++|||+|++|+|+|..|++.|.+|
T Consensus 136 -~~~~~~~~i~~d~lViAtG--s~p~--~~~g~~~~~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~V 209 (478)
T 1v59_A 136 -GTVKEDHILDVKNIIVATG--SEVT--PFPGIEIDEEKIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKV 209 (478)
T ss_dssp -TCCSSCEEEEEEEEEECCC--EEEC--CCTTCCCCSSSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred -ccccccceEEeCEEEECcC--CCCC--CCCCCCCCCceEEcHHHHHhhhc-cCceEEEECCCHHHHHHHHHHHHcCCEE
Confidence 24 89999999999 5553 34454321113344333333222 4799999999999999999999999999
Q ss_pred EEEEecCC----------ccccccCCCCC-CeEEecceeEEec--CCc---EEEc-----cCcEEecCEEEEcccCCCcc
Q 018550 224 HIASRSVA----------DETHEKQPGYD-NMWLHSMVERANE--DGT---VVFR-----NGRVVSADVIMHCTGLTGTS 282 (354)
Q Consensus 224 ~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~--~~~---v~~~-----~g~~~~~D~vi~a~G~~~~~ 282 (354)
+++++.+. +...+.+++.+ +++.++.|+++.. ++. ++++ +++++++|.||+|+|++
T Consensus 210 tlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~--- 286 (478)
T 1v59_A 210 TVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRR--- 286 (478)
T ss_dssp EEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEE---
T ss_pred EEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCC---
Confidence 99999874 11222334444 8899999999986 443 5555 34689999999999999
Q ss_pred Cccc--ccCchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCCc
Q 018550 283 TTTL--FLKPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 283 p~~~--~l~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~ 324 (354)
||++ +++..+.. ..+|||+|||+.. ...|+...+.++.+...
T Consensus 287 p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~ 352 (478)
T 1v59_A 287 PYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGHG 352 (478)
T ss_dssp ECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHSCC
T ss_pred cCCCCCCchhcCceeCCCCCEeECcCCccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCCC
Confidence 6666 44433221 2349999999873 35677777888876443
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=247.92 Aligned_cols=261 Identities=16% Similarity=0.224 Sum_probs=167.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
|++||+|||||++|+++|..|++.|.+|+|||++ .+||+|.+. +|.|.+.+.....+.....+... +++
T Consensus 1 m~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~~~--------gc~P~k~l~~~a~~~~~~~~~~~--~g~ 69 (500)
T 1onf_A 1 MVYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNV--------GCVPKKIMFNAASVHDILENSRH--YGF 69 (500)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHT--------SHHHHHHHHHHHHHHHHHHHGGG--GTC
T ss_pred CccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCcccccc--------CCcchHHHHHHHHHHHHHHhhHh--cCC
Confidence 6789999999999999999999999999999997 689999873 66665443332222111111111 111
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHH-----------HHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEe-----
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEV-----------LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR----- 144 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~----- 144 (354)
... ...++..+ ...+...+.+.+++ +..+. +..++. ..+.+...
T Consensus 70 ---~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~-~~~id~---~~v~v~~~~~~~~ 129 (500)
T 1onf_A 70 ---DTK-----------FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVD--LYEGT-ASFLSE---NRILIKGTKDNNN 129 (500)
T ss_dssp ---CCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESC-CCCC------------------
T ss_pred ---ccC-----------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEeeC---CEEEEEecccccc
Confidence 000 00111222 22334445566777 66653 233321 23333220
Q ss_pred ----ecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccC
Q 018550 145 ----KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFA 220 (354)
Q Consensus 145 ----~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g 220 (354)
++. ..++.||+||+||| +.|+.|+++|.+. .+++..+..... +++++|||+|++|+|+|..|++.|
T Consensus 130 ~~~~~~~--~~~~~~d~lViAtG--s~p~~p~i~G~~~----~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g 199 (500)
T 1onf_A 130 KDNGPLN--EEILEGRNILIAVG--NKPVFPPVKGIEN----TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLG 199 (500)
T ss_dssp -------------CBSSEEECCC--CCBCCCSCTTGGG----CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTT
T ss_pred ccccCCC--ceEEEeCEEEECCC--CCCCCCCCCCCCc----ccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcC
Confidence 011 13789999999999 7899998888642 344444433332 799999999999999999999999
Q ss_pred CEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecC--C--cEEEccCcE-EecCEEEEcccCCCccCc
Q 018550 221 KEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANED--G--TVVFRNGRV-VSADVIMHCTGLTGTSTT 284 (354)
Q Consensus 221 ~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~--~--~v~~~~g~~-~~~D~vi~a~G~~~~~p~ 284 (354)
.+|+++++.+. +...+.+++.+ +++.++.|++++.+ + .+++++|++ +++|.||+|+|++ |+
T Consensus 200 ~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~---p~ 276 (500)
T 1onf_A 200 IDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRS---PD 276 (500)
T ss_dssp CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBC---CT
T ss_pred CeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCC---cC
Confidence 99999999764 11223344455 89999999999854 3 267788887 9999999999999 77
Q ss_pred ccc--cCchhhh---------------hceeeeecccc
Q 018550 285 TLF--LKPMALL---------------LWMTIVLGHCT 305 (354)
Q Consensus 285 ~~~--l~~~~~~---------------~~~i~a~GD~~ 305 (354)
++. ++..+.. ..+|||+|||+
T Consensus 277 ~~~l~~~~~g~~~~~G~i~vd~~~~t~~~~iya~GD~~ 314 (500)
T 1onf_A 277 TENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCC 314 (500)
T ss_dssp TTTSSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTE
T ss_pred CCCCCchhcCccccCCEEEECCCcccCCCCEEEEeccc
Confidence 653 2332221 23599999999
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=249.40 Aligned_cols=282 Identities=18% Similarity=0.246 Sum_probs=185.3
Q ss_pred CeEEEEcCChHHHHHHHHHHH-cCCcEEEEe--------eCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcc
Q 018550 3 RHVAVIGAGAAGLVVGHELLR-EGHTVVVYE--------KGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~-~g~~v~lie--------~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
+||+|||||++|+++|..|++ .|++|+||| +...+||+|.+. +|.|.+.+.............
T Consensus 8 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~--------gciP~k~l~~~a~~~~~~~~~ 79 (495)
T 2wpf_A 8 FDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNV--------GCVPKKLMVTGAQYMDHLRES 79 (495)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHH
T ss_pred cCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecC--------CcchHHHHHHHHHHHHHHhHH
Confidence 689999999999999999999 999999999 346789999874 677665544333221111111
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHH-----------HHHHh-CCcceEEeceEEEEEEEeCCCcEEE
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----------FAREF-GVDQVVRLHTEVLNARLVESNKWKV 141 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v 141 (354)
+ .+.+... ......++..+.++..+ .+++. +++ ++.+ ++..++ .+++
T Consensus 80 ~-------~~g~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~--~~~g-~~~~i~-----~~~v 138 (495)
T 2wpf_A 80 A-------GFGWEFD------GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLD--FFLG-WGSLES-----KNVV 138 (495)
T ss_dssp H-------TTTEECC------GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEE--EEES-EEEEEE-----TTEE
T ss_pred H-------hcCcccC------CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE--EEEe-EEEEee-----CCEE
Confidence 1 1111000 00000122344433332 33444 666 6654 355542 2345
Q ss_pred EEeecCC----ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHh
Q 018550 142 KSRKKDD----VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLA 217 (354)
Q Consensus 142 ~~~~g~~----~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~ 217 (354)
.+.+..+ ....+.||+||+||| +.|+.|+++|.+. .+++..+.... ..+++++|||+|.+|+|+|..|+
T Consensus 139 ~v~~~~~~~~~~~~~~~~d~lViATG--s~p~~p~i~G~~~----~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~ 211 (495)
T 2wpf_A 139 VVRETADPKSAVKERLQADHILLATG--SWPQMPAIPGIEH----CISSNEAFYLP-EPPRRVLTVGGGFISVEFAGIFN 211 (495)
T ss_dssp EEESSSSTTSCEEEEEEEEEEEECCC--EEECCCCCTTGGG----CEEHHHHTTCS-SCCSEEEEECSSHHHHHHHHHHH
T ss_pred EEeecCCccCCCCeEEEcCEEEEeCC--CCcCCCCCCCccc----cccHHHHHhhh-hcCCeEEEECCCHHHHHHHHHHH
Confidence 5542100 014799999999999 8899998888642 23333333322 24789999999999999999999
Q ss_pred cc---CCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecC--C--cEEEccCcEEecCEEEEcccCC
Q 018550 218 GF---AKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 218 ~~---g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~--~--~v~~~~g~~~~~D~vi~a~G~~ 279 (354)
+. |.+|+++++.+. ....+.+++.+ +++.++.|+++..+ + .|++++|+++++|.||+|+|++
T Consensus 212 ~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~ 291 (495)
T 2wpf_A 212 AYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRI 291 (495)
T ss_dssp HHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred hhCCCCCeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCc
Confidence 99 999999999764 11223334445 89999999999854 2 2777888899999999999999
Q ss_pred CccCccccc--Cchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 280 GTSTTTLFL--KPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 280 ~~~p~~~~l--~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
||+++| +..+.. ..+|||+|||+.. ...|+...+.++.+..
T Consensus 292 ---p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~ 356 (495)
T 2wpf_A 292 ---PRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNK 356 (495)
T ss_dssp ---ECCGGGTGGGTTCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSC
T ss_pred ---ccccccchhhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCC
Confidence 777643 322211 1349999999873 3567777788887643
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=250.50 Aligned_cols=281 Identities=15% Similarity=0.158 Sum_probs=190.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccc-cccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (354)
+++|+|||||++|+++|..|++.|.+|+|||+++.+||.|.+. +|.|.+.+..... +..+. +.+
T Consensus 43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~--------g~~p~k~l~~~~~~~~~~~-~~~------ 107 (523)
T 1mo9_A 43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHN--------ACVPHHLFSDCAAELMLAR-TFS------ 107 (523)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHH--------SHHHHHHHHHHHHHHHHHH-HTT------
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccccc--------CcCchHHHHHHHHHHHHHh-hhh------
Confidence 4789999999999999999999999999999987799998863 4444332221111 11111 111
Q ss_pred cCCC-CCccCCCCCCCCCCCCCHHHHHHHHH-------HHH-----HHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC
Q 018550 81 QAYP-FVARNYEGSVDLRRYPGHEEVLRYLQ-------NFA-----REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD 147 (354)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~-----~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~ 147 (354)
.+. +.. ....+++..++.+++. ... .+.+++ +.++.++..++. +.+.+. +
T Consensus 108 -~~g~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~-----~~v~~~-g- 170 (523)
T 1mo9_A 108 -GQYWFPD-------MTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLE--YILNCPAKVIDN-----HTVEAA-G- 170 (523)
T ss_dssp -TSTTCCC-------CTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCC--EEESSCCEEEET-----TEEEET-T-
T ss_pred -hcCcHHH-------HHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcE--EEEeeEEEEeeC-----CEEEEC-C-
Confidence 111 100 1112333566666654 333 556777 775677777652 245543 2
Q ss_pred CceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCC-CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEE
Q 018550 148 DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA 226 (354)
Q Consensus 148 ~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~ 226 (354)
..+.||+||+||| +.|+.|+++|.... .++++.... ......+++++|||+|.+|+|+|..|.+.|.+|+++
T Consensus 171 ---~~~~~d~lViATG--s~p~~p~i~G~~~~--~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv 243 (523)
T 1mo9_A 171 ---KVFKAKNLILAVG--AGPGTLDVPGVNAK--GVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVML 243 (523)
T ss_dssp ---EEEEBSCEEECCC--EECCCCCSTTTTSB--TEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred ---EEEEeCEEEECCC--CCCCCCCCCCcccC--cEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 3799999999999 88999998887641 234433333 222233499999999999999999999999999999
Q ss_pred EecCC----------ccccccCCCCC-CeEEecceeEEec--CCc-----EEEccCc-EEecCEEEEcccCCCccCccc-
Q 018550 227 SRSVA----------DETHEKQPGYD-NMWLHSMVERANE--DGT-----VVFRNGR-VVSADVIMHCTGLTGTSTTTL- 286 (354)
Q Consensus 227 ~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~--~~~-----v~~~~g~-~~~~D~vi~a~G~~~~~p~~~- 286 (354)
.+.+. ....+.+++.+ +++.++.|+++.. ++. |++++|+ ++++|.||+|+|+. |+++
T Consensus 244 ~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~---p~~~~ 320 (523)
T 1mo9_A 244 VRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ---PRSAE 320 (523)
T ss_dssp CSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCE---ECCHH
T ss_pred EecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCc---cCCcc
Confidence 99764 11223334445 8999999999975 442 5566776 89999999999999 7776
Q ss_pred ccCchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCCc
Q 018550 287 FLKPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 287 ~l~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~ 324 (354)
+++..+.. ..+|||+|||+.. ...|+...+.++.+...
T Consensus 321 ~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~ 380 (523)
T 1mo9_A 321 LAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEKI 380 (523)
T ss_dssp HHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHcCCccCCCCCEEECCCCccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCCC
Confidence 55433221 2349999999983 35677777888877443
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-32 Score=245.01 Aligned_cols=263 Identities=13% Similarity=0.179 Sum_probs=179.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+.+|+|||||+||+++|..|.+.+.+|+|||+++.++.... ..... .. +
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~----------------------~l~~~---l~----g-- 57 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRP----------------------RLNEI---IA----K-- 57 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGG----------------------GHHHH---HH----S--
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccC----------------------hhhHH---Hc----C--
Confidence 46899999999999999999778899999999865431000 00000 00 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
..+ .+++..+..+++++.+++ ++++++|++++.++ .++++.++. ++.||+||+|
T Consensus 58 ~~~-----------------~~~l~~~~~~~~~~~~i~--~~~~~~V~~id~~~---~~v~~~~g~----~~~yd~lvlA 111 (385)
T 3klj_A 58 NKS-----------------IDDILIKKNDWYEKNNIK--VITSEFATSIDPNN---KLVTLKSGE----KIKYEKLIIA 111 (385)
T ss_dssp CCC-----------------GGGTBSSCHHHHHHTTCE--EECSCCEEEEETTT---TEEEETTSC----EEECSEEEEC
T ss_pred CCC-----------------HHHccCCCHHHHHHCCCE--EEeCCEEEEEECCC---CEEEECCCC----EEECCEEEEe
Confidence 000 022222334455677888 99999999998643 467777764 8999999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCC-----CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--c--
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP-----FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--D-- 232 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--~-- 232 (354)
|| +.|+.|+++|.+ .+.+.....+... ..+++++|||+|.+|+|+|..|++.|.+|+++++.+. .
T Consensus 112 tG--~~p~~p~i~G~~----~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~ 185 (385)
T 3klj_A 112 SG--SIANKIKVPHAD----EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQ 185 (385)
T ss_dssp CC--EEECCCCCTTCS----CEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTT
T ss_pred cC--CCcCCCCCCCCC----CeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh
Confidence 99 899999998876 2222221111111 1268999999999999999999999999999999874 1
Q ss_pred -------cccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCchhhh----------
Q 018550 233 -------ETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL---------- 294 (354)
Q Consensus 233 -------~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~---------- 294 (354)
...+.+++.+ +++.++.++++ |+++++|.||+|+|++ |++++++..+..
T Consensus 186 ~~~~~~~~~~~~l~~~gV~~~~~~~v~~i----------g~~~~~D~vv~a~G~~---p~~~~~~~~gl~~~~gi~vd~~ 252 (385)
T 3klj_A 186 LDRDGGLFLKDKLDRLGIKIYTNSNFEEM----------GDLIRSSCVITAVGVK---PNLDFIKDTEIASKRGILVNDH 252 (385)
T ss_dssp SCHHHHHHHHHHHHTTTCEEECSCCGGGC----------HHHHHHSEEEECCCEE---ECCGGGTTSCCCBSSSEEECTT
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEc----------CeEEecCeEEECcCcc---cChhhhhhcCCCcCCCEEECCC
Confidence 1122233444 67777777665 5678999999999999 888887654332
Q ss_pred ----hceeeeecccch----------hhHHHHHHHhhhccCCCccccc-CCCCCccccCCc
Q 018550 295 ----LWMTIVLGHCTS----------TFFRQSWHQAFHLLGYHRRLSL-SPSLNSRASGLP 340 (354)
Q Consensus 295 ----~~~i~a~GD~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 340 (354)
..+|||+|||+. ....|+...|.++.+....+.. .|..++..+++.
T Consensus 253 ~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~ 313 (385)
T 3klj_A 253 METSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGEDASYSEIIPSPILKVSGIS 313 (385)
T ss_dssp CBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCCCCCCCCCCCCEEEETTEE
T ss_pred cccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCCcCCCCCCCcEEEEeCCCc
Confidence 345999999985 2456777888898876554332 133444334443
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=247.90 Aligned_cols=285 Identities=15% Similarity=0.196 Sum_probs=183.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+|||||++|+++|..|++.|.+|+|||++ .+||+|.+. +|.|.+.+............... +++.
T Consensus 11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~--------gciP~k~l~~~~~~~~~~~~~~~--~g~~ 79 (479)
T 2hqm_A 11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNV--------GCVPKKVMWYASDLATRVSHANE--YGLY 79 (479)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHTTTTT--TTBS
T ss_pred cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCccc--------CcHHHHHHHHHHHHHHHHHhHHh--cCcc
Confidence 378999999999999999999999999999997 789999863 56665443322211111111110 0110
Q ss_pred CC-CCCccCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 82 AY-PFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
.. +... .....++..+. ..+...+.+.+++ +..+ ++..+ +. +.+.+...++.
T Consensus 80 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i--~~-~~~~v~~~~g~-- 143 (479)
T 2hqm_A 80 QNLPLDK--------EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVD--VVFG-WARFN--KD-GNVEVQKRDNT-- 143 (479)
T ss_dssp TTSCCSG--------GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEE--EEEE-EEEEC--TT-SCEEEEESSSC--
T ss_pred ccccccc--------ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEe--eC-CEEEEEeCCCc--
Confidence 00 0000 00011122222 2333444455666 5554 35444 22 55666654442
Q ss_pred eEEEEeCEEEEeeCCCCCcccC-CCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 150 VEEETFDAVVVCNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| +.|+.| +++|.+. .+++..+... ...+++++|||+|++|+|+|..|++.|.+|+++++
T Consensus 144 ~~~~~~d~lviAtG--s~p~~p~~i~g~~~----~~~~~~~~~l-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~ 216 (479)
T 2hqm_A 144 TEVYSANHILVATG--GKAIFPENIPGFEL----GTDSDGFFRL-EEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIR 216 (479)
T ss_dssp CEEEEEEEEEECCC--EEECCCTTSTTGGG----SBCHHHHHHC-SSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEEEeCEEEEcCC--CCCCCCCCCCCccc----ccchHHHhcc-cccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEe
Confidence 24789999999999 888888 8888642 1222222111 12578999999999999999999999999999999
Q ss_pred cCC-----c-----cccccCCCCC-CeEEecceeEEecC--C---cEEEccC-cEEecCEEEEcccCCCccCcccc-cCc
Q 018550 229 SVA-----D-----ETHEKQPGYD-NMWLHSMVERANED--G---TVVFRNG-RVVSADVIMHCTGLTGTSTTTLF-LKP 290 (354)
Q Consensus 229 ~~~-----~-----~~~~~l~~~~-~~~~~~~v~~v~~~--~---~v~~~~g-~~~~~D~vi~a~G~~~~~p~~~~-l~~ 290 (354)
.+. + ...+.+++.+ +++.++.|+++..+ + .|++++| +++++|.||+|+|++ ||+.+ ++.
T Consensus 217 ~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~---p~~~l~l~~ 293 (479)
T 2hqm_A 217 GETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRK---SHLGMGSEN 293 (479)
T ss_dssp SSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEE---ECCCSSGGG
T ss_pred CCccccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCC---CccccChhh
Confidence 864 1 1222333444 88999999999753 3 2777888 789999999999999 66655 333
Q ss_pred hhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 291 MALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 291 ~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
.+.. ..+|||+|||... ...|+...+.++.+..
T Consensus 294 ~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (479)
T 2hqm_A 294 VGIKLNSHDQIIADEYQNTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPE 348 (479)
T ss_dssp GTCCBCTTSCBCCCTTCBCSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSCG
T ss_pred cCceECCCCCEeECCCCccCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 2221 2349999999763 3566777788887643
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=245.61 Aligned_cols=275 Identities=18% Similarity=0.190 Sum_probs=181.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhcccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (354)
++|+|||||++|+++|..|++.|.+|+|||+++ +||+|.+. +|.|.+.++... .+..+.. .. .+++.
T Consensus 7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~--------g~iP~k~l~~~~~~~~~~~~-~~--~~g~~ 74 (464)
T 2eq6_A 7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNV--------GCIPTKALLHAAETLHHLKV-AE--GFGLK 74 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHT--------SHHHHHHHHHHHHHHHHHHH-HG--GGTEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCc--------ChHHHHHHHHHHHHHHHHHh-HH--hcCCC
Confidence 789999999999999999999999999999976 99999873 666654433322 1111111 00 01111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHH-------H----HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLR-------Y----LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
... .++...+.. + +...+++.+++ +..++.+. + +. . ++.+. +
T Consensus 75 ~~~--------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~--~~-~--~v~v~-g---- 127 (464)
T 2eq6_A 75 AKP--------------ELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVE--LLRGFARL-V--GP-K--EVEVG-G---- 127 (464)
T ss_dssp CCC--------------EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESCEEE-E--ET-T--EEEET-T----
T ss_pred CCC--------------CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEeeeEEE-c--cC-C--EEEEc-c----
Confidence 000 001122222 2 34445566787 77765442 3 22 3 44444 3
Q ss_pred EEEEeCEEEEeeCCCCCcccCC-CCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.++.||+||+||| ++|+.|+ +++.. ..+++.+........+++++|||+|++|+|+|..|++.|.+|+++++.
T Consensus 128 ~~~~~d~lViATG--s~p~~p~gi~~~~----~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 201 (464)
T 2eq6_A 128 ERYGAKSLILATG--SEPLELKGFPFGE----DVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYM 201 (464)
T ss_dssp EEEEEEEEEECCC--EEECCBTTBCCSS----SEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEEEeCEEEEcCC--CCCCCCCCCCCCC----cEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcC
Confidence 3799999999999 7888776 65521 344444443333335799999999999999999999999999999997
Q ss_pred CC-----c-----cccccCCCCC-CeEEecceeEEecCCc---EEEc-c--Cc--EEecCEEEEcccCCCccCccccc--
Q 018550 230 VA-----D-----ETHEKQPGYD-NMWLHSMVERANEDGT---VVFR-N--GR--VVSADVIMHCTGLTGTSTTTLFL-- 288 (354)
Q Consensus 230 ~~-----~-----~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~-~--g~--~~~~D~vi~a~G~~~~~p~~~~l-- 288 (354)
+. + ...+.+++.+ +++.++.|+++..++. ++++ + |+ ++++|.|++|+|++ |+++++
T Consensus 202 ~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~---p~~~~l~l 278 (464)
T 2eq6_A 202 PEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRK---PRTEGLGL 278 (464)
T ss_dssp SSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEE---ESCTTSSH
T ss_pred CccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcc---cCCCCCCh
Confidence 64 1 1222333444 8899999999985432 5555 6 76 89999999999999 666653
Q ss_pred Cchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCCcc
Q 018550 289 KPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 289 ~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~ 325 (354)
+..+.. ..+|||+|||+.. ...|+...+.++.+....
T Consensus 279 ~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~ 337 (464)
T 2eq6_A 279 EKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGKDSA 337 (464)
T ss_dssp HHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred hhcCceecCCCCEEECCCcccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCCCcc
Confidence 221111 2349999999863 456777888888775433
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=247.25 Aligned_cols=281 Identities=17% Similarity=0.228 Sum_probs=183.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhcccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (354)
++|+|||||++|+++|..|++.|++|+|||++ .+||.|... +|.|.+.++... .+..+...... +++.
T Consensus 4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~--------g~~psk~ll~~~~~~~~~~~~~~~--~g~~ 72 (464)
T 2a8x_A 4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNV--------GCIPSKALLRNAELVHIFTKDAKA--FGIS 72 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHHTTT--TTEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccccc--------CchhhHHHHHHHHHHHHHHHHHHh--cCCC
Confidence 79999999999999999999999999999997 788888763 444443222211 11111101100 0110
Q ss_pred ---CCCCCccCCCCCCCCCCCCCH----HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 82 ---AYPFVARNYEGSVDLRRYPGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
...+.. .+... ..+.+.+.+.+++.+++ ++.++.+. + +. +.+.+.+.++. ..++.
T Consensus 73 ~~~~~~~~~----------~~~~~~~~~~~l~~~l~~~~~~~gv~--~~~g~~~~-i--d~-~~v~V~~~~G~--~~~~~ 134 (464)
T 2a8x_A 73 GEVTFDYGI----------AYDRSRKVAEGRVAGVHFLMKKNKIT--EIHGYGTF-A--DA-NTLLVDLNDGG--TESVT 134 (464)
T ss_dssp ECCEECHHH----------HHHHHHHHHHHHHHHHHHHHHHTTCE--EECEEEEE-S--SS-SEEEEEETTSC--CEEEE
T ss_pred CCCccCHHH----------HHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE-e--cC-CeEEEEeCCCc--eEEEE
Confidence 000000 00000 12333445666667887 77765443 2 33 55666665442 24799
Q ss_pred eCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---
Q 018550 155 FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--- 231 (354)
||+||+||| +.|+.|+++|.+. ..+++....... ..+++++|||+|.+|+|+|..|++.|.+|+++++.+.
T Consensus 135 ~d~lViAtG--~~~~~~~~~g~~~---~~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~ 208 (464)
T 2a8x_A 135 FDNAIIATG--SSTRLVPGTSLSA---NVVTYEEQILSR-ELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP 208 (464)
T ss_dssp EEEEEECCC--EEECCCTTCCCBT---TEECHHHHHTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred cCEEEECCC--CCCCCCCCCCCCc---eEEecHHHhhcc-ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence 999999999 7888888877553 234433332222 2479999999999999999999999999999999864
Q ss_pred -------ccccccCCCCC-CeEEecceeEEecCC-c--EEEc-cC--cEEecCEEEEcccCCCccCccccc--Cchhhh-
Q 018550 232 -------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFR-NG--RVVSADVIMHCTGLTGTSTTTLFL--KPMALL- 294 (354)
Q Consensus 232 -------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~-~g--~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~~- 294 (354)
+...+.+++.+ +++.++.|+++..++ . +.++ +| +++++|.|++|+|++ ||++++ +..+..
T Consensus 209 ~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~---p~~~~l~~~~~gl~~ 285 (464)
T 2a8x_A 209 NEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFA---PNVEGYGLDKAGVAL 285 (464)
T ss_dssp TSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEE---ECCSSSCHHHHTCCB
T ss_pred ccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCC---ccCCCCCchhcCCcc
Confidence 11222334444 889999999998554 2 4444 56 679999999999999 777663 222211
Q ss_pred ---------------hceeeeecccchh------hHHHHHHHhhhccC
Q 018550 295 ---------------LWMTIVLGHCTST------FFRQSWHQAFHLLG 321 (354)
Q Consensus 295 ---------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~ 321 (354)
..+|||+|||+.. ...|+...+.++.+
T Consensus 286 ~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 286 TDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp CTTSSBCCCTTSBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEeECcCCccCCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 2349999999873 35677777888876
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=245.28 Aligned_cols=275 Identities=18% Similarity=0.233 Sum_probs=181.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+|||||++|+++|..|++.|.+|+|||++ .+||+|.+. +|.|.+.+.....+.....+.+. +++
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~--------gciP~k~l~~~a~~~~~~~~~~~--~g~- 71 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNV--------GCVPKKVMWYASHLAEAVRDAPG--FGV- 71 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHGGG--GTB-
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCc--------CchhHHHHHHHHHHHHHHhhhhh--cCc-
Confidence 479999999999999999999999999999997 789999873 66665544333222111111111 111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.... ...++..+.++ +...+.+.+++ +..+. +..++ . +.+.+ ++
T Consensus 72 --~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~-~~~i~--~---~~v~~-~g---- 126 (463)
T 2r9z_A 72 --QASG----------GTLDWPRLVAGRDRYIGAINSFWDGYVERLGIT--RVDGH-ARFVD--A---HTIEV-EG---- 126 (463)
T ss_dssp --CCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESC-EEEEE--T---TEEEE-TT----
T ss_pred --ccCC----------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEeE-EEEcc--C---CEEEE-CC----
Confidence 0000 01112333322 23334556777 66653 44442 2 34555 33
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++.||+||+||| +.|+.|+++|.+. ..++..+.... ..+++++|||+|.+|+|+|..|++.|.+|+++++.+
T Consensus 127 ~~~~~d~lviAtG--s~p~~p~i~G~~~----~~~~~~~~~~~-~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~ 199 (463)
T 2r9z_A 127 QRLSADHIVIATG--GRPIVPRLPGAEL----GITSDGFFALQ-QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALED 199 (463)
T ss_dssp EEEEEEEEEECCC--EEECCCSCTTGGG----SBCHHHHHHCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred EEEEcCEEEECCC--CCCCCCCCCCccc----eecHHHHhhhh-ccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC
Confidence 3789999999999 8888888888642 12222221111 246899999999999999999999999999999976
Q ss_pred C----------ccccccCCCCC-CeEEecceeEEecCC---cEEEccCc-EEecCEEEEcccCCCccCccccc--Cchhh
Q 018550 231 A----------DETHEKQPGYD-NMWLHSMVERANEDG---TVVFRNGR-VVSADVIMHCTGLTGTSTTTLFL--KPMAL 293 (354)
Q Consensus 231 ~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~---~v~~~~g~-~~~~D~vi~a~G~~~~~p~~~~l--~~~~~ 293 (354)
. +...+.+++.+ +++.++.|+++..++ .|++++|+ ++++|.|++|+|++ |++++| +..+.
T Consensus 200 ~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~---p~~~~l~~~~~g~ 276 (463)
T 2r9z_A 200 RLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRA---PNTRDLGLEAAGI 276 (463)
T ss_dssp SSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEE---ESCTTSCHHHHTC
T ss_pred ccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCC---cCCCCCCchhcCC
Confidence 4 11122333444 889999999998542 27778888 89999999999999 766633 22111
Q ss_pred ----------------hhceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 294 ----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 294 ----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
...+|||+|||... ...|+...+.++.+..
T Consensus 277 ~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 328 (463)
T 2r9z_A 277 EVQSNGMVPTDAYQNTNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDGQ 328 (463)
T ss_dssp CCCTTSCCCCCTTSBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCCCEeECCCCccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 12359999999862 3566777788887643
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=249.57 Aligned_cols=279 Identities=16% Similarity=0.136 Sum_probs=180.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
+||+|||||++|+++|..|+++|.+|+|||++ .+||+|.+. +|.|.+.++..........+.+.
T Consensus 9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~~~--------gciPsk~l~~~a~~~~~~~~~~~------- 72 (492)
T 3ic9_A 9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCARV--------GCMPSKLLIAAADASYHASQTDL------- 72 (492)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHHHH--------SHHHHHHHHHHHHHHHHHTCGGG-------
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCccccc--------ChhcCHHHHHHHHHHHHHhhhhh-------
Confidence 68999999999999999999999999999996 599999874 78887766554432222222221
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCC----------cceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGV----------DQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
+.+... ....++..+.+++.+..+++.. ...+.. .+..-. +.+++.+.++ .+
T Consensus 73 ~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-g~a~~~-----~~~~v~~~~~----~~ 134 (492)
T 3ic9_A 73 FGIQVD--------RISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIR-GFAKFL-----DEHTLQVDDH----SQ 134 (492)
T ss_dssp GTEECS--------EEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEE-SCEEEE-----ETTEEEETTT----EE
T ss_pred cCcCCC--------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEE-EEEEEe-----cCCEEEEcCC----cE
Confidence 111000 0001224455554443332210 000221 111111 2345666444 38
Q ss_pred EEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-
Q 018550 153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~- 231 (354)
+.||+||+||| +.|+.|++++... ...+++...... ...+++++|||+|++|+|+|..|++.|.+|+++.+.+.
T Consensus 135 ~~~d~lViATG--s~p~~p~~~~~~~--~~v~t~~~~~~~-~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 209 (492)
T 3ic9_A 135 VIAKRIVIATG--SRPNYPEFLAAAG--SRLLTNDNLFEL-NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV 209 (492)
T ss_dssp EEEEEEEECCC--EECCCCHHHHTTG--GGEECHHHHTTC-SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred EEeCEEEEccC--CCCcCCCCCCccC--CcEEcHHHHhhh-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence 99999999999 8888887554321 233333333322 23579999999999999999999999999999999875
Q ss_pred ---------ccccccCCCCCCeEEecceeEEecCC-c--EEEc--cC--cEEecCEEEEcccCCCccCccccc--Cchhh
Q 018550 232 ---------DETHEKQPGYDNMWLHSMVERANEDG-T--VVFR--NG--RVVSADVIMHCTGLTGTSTTTLFL--KPMAL 293 (354)
Q Consensus 232 ---------~~~~~~l~~~~~~~~~~~v~~v~~~~-~--v~~~--~g--~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~ 293 (354)
+...+.+++..+++.++.|++++.++ . +.+. +| +++++|.||+|+|++ |+++++ +..+.
T Consensus 210 l~~~d~~~~~~l~~~l~~~V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~---p~~~~l~l~~~gl 286 (492)
T 3ic9_A 210 ANLQDEEMKRYAEKTFNEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRK---ANVDKLGLENTSI 286 (492)
T ss_dssp TTCCCHHHHHHHHHHHHTTSEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCE---ESCSSSCGGGSCC
T ss_pred cccCCHHHHHHHHHHHhhCcEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCc---cCCCCCChhhcCC
Confidence 11122233336788889999997543 3 4443 67 679999999999999 666652 21111
Q ss_pred -----------------hhceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 294 -----------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 294 -----------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
...+|||+|||+.. ...|+...+.++.++.
T Consensus 287 ~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 339 (492)
T 3ic9_A 287 ELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGAYP 339 (492)
T ss_dssp CBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCCCEeECcccccCCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 12349999999873 3566777788887643
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=245.41 Aligned_cols=284 Identities=17% Similarity=0.212 Sum_probs=184.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-cCCcEEEEe--------eCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYE--------KGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~-~g~~v~lie--------~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (354)
++||+|||||++|+++|..|++ .|.+|+||| +...+||+|.+. +|.|.+.+...........+
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~ 74 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNV--------GCVPKKLMVTGANYMDTIRE 74 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHH--------SHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCC--------CcchhhHHHHHHHHHHHHHH
Confidence 5799999999999999999999 999999999 246889999874 77776655443322211111
Q ss_pred cccccccccCCCCCccCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEE
Q 018550 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREF-GVDQVVRLHTEVLNARLVESNKWK 140 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~ 140 (354)
... +++..- .. ....++..+.+ .+...+++. +++ +..+. +..++ . ..+.
T Consensus 75 ~~~--~g~~~~-~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~--~~~g~-~~~i~--~-~~v~ 135 (490)
T 1fec_A 75 SAG--FGWELD-RE----------SVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT--FHQGF-GALQD--N-HTVL 135 (490)
T ss_dssp GGG--GTEECC-GG----------GCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE--EEESE-EEEEE--T-TEEE
T ss_pred HHh--cCcccC-Cc----------ccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE--EEEeE-EEEee--C-CEEE
Confidence 111 111000 00 00001133333 223333444 666 66653 55553 2 3333
Q ss_pred EEE---eecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHh
Q 018550 141 VKS---RKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLA 217 (354)
Q Consensus 141 v~~---~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~ 217 (354)
+.. .++. ....+.||+||+||| +.|+.|+++|.+. .+++..+... ...+++++|||+|++|+|+|..|.
T Consensus 136 v~~~~~~~g~-~~~~~~~d~lviAtG--s~p~~p~i~g~~~----~~~~~~~~~~-~~~~~~vvViGgG~ig~E~A~~l~ 207 (490)
T 1fec_A 136 VRESADPNSA-VLETLDTEYILLATG--SWPQHLGIEGDDL----CITSNEAFYL-DEAPKRALCVGGGYISIEFAGIFN 207 (490)
T ss_dssp EESSSSTTSC-EEEEEEEEEEEECCC--EEECCCCSBTGGG----CBCHHHHTTC-SSCCSEEEEECSSHHHHHHHHHHH
T ss_pred EEeeccCCCC-ceEEEEcCEEEEeCC--CCCCCCCCCCccc----eecHHHHhhh-hhcCCeEEEECCCHHHHHHHHHHH
Confidence 321 1220 014799999999999 8899888888642 2222222222 224789999999999999999999
Q ss_pred cc---CCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecC--C--cEEEccCcEEecCEEEEcccCC
Q 018550 218 GF---AKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 218 ~~---g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~--~--~v~~~~g~~~~~D~vi~a~G~~ 279 (354)
+. |.+|+++++.+. ....+.+++.+ +++.++.|+++..+ + .|++++|+++++|.||+|+|+.
T Consensus 208 ~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~ 287 (490)
T 1fec_A 208 AYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRV 287 (490)
T ss_dssp HHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred hhccCcCeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCC
Confidence 99 999999999874 11223334455 89999999999854 2 2677888899999999999999
Q ss_pred CccCcccc--cCchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 280 GTSTTTLF--LKPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 280 ~~~p~~~~--l~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
|++++ ++..+.. ..+|||+|||+.. ...|+...+.++.+..
T Consensus 288 ---p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~ 352 (490)
T 1fec_A 288 ---PRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANK 352 (490)
T ss_dssp ---ESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSC
T ss_pred ---cCccccCchhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCC
Confidence 77663 3322221 2349999999873 3566777788887643
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=243.34 Aligned_cols=288 Identities=16% Similarity=0.126 Sum_probs=184.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC------CccceeecCCCCCCCCCCCCCCCCcccccc-cccchhcc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE------QVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNL 73 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 73 (354)
+++||+|||||++|+++|..|++.|++|+|||+++ .+||+|.+. +|.|.+.+..... +..+....
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~--------gciPsk~l~~~~~~~~~~~~~~ 73 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNV--------GCIPSKALLDSSYKFHEAHESF 73 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHH--------SHHHHHHHHHHHHHHHHHHTTS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccc--------cHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999975 367777663 6666554433221 11111111
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHH-----------HHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEE
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEV-----------LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVK 142 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~ 142 (354)
....+.... ...++..+ ...+....++.+++ +..+. +..+ +. +.+.+.
T Consensus 74 ~~~g~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-~~~~--~~-~~~~v~ 132 (476)
T 3lad_A 74 KLHGISTGE---------------VAIDVPTMIARKDQIVRNLTGGVASLIKANGVT--LFEGH-GKLL--AG-KKVEVT 132 (476)
T ss_dssp GGGTEECSC---------------CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESE-EEEC--ST-TCEEEE
T ss_pred HhcCcccCC---------------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEe--cC-CEEEEE
Confidence 111000000 00111222 22233444556777 66543 3222 22 556666
Q ss_pred EeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCE
Q 018550 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (354)
Q Consensus 143 ~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~ 222 (354)
..++. ...+.||+||+||| +.|+.|+..+... ...+++...... ...+++++|||+|++|+|+|..|++.|.+
T Consensus 133 ~~~g~--~~~~~~d~lvlAtG--~~p~~~~~~~~~~--~~v~~~~~~~~~-~~~~~~v~ViGgG~~g~e~A~~l~~~g~~ 205 (476)
T 3lad_A 133 AADGS--SQVLDTENVILASG--SKPVEIPPAPVDQ--DVIVDSTGALDF-QNVPGKLGVIGAGVIGLELGSVWARLGAE 205 (476)
T ss_dssp CTTSC--EEEECCSCEEECCC--EEECCCTTSCCCS--SSEEEHHHHTSC-SSCCSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred cCCCc--eEEEEcCEEEEcCC--CCCCCCCCCCCCc--ccEEechhhhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 54432 35899999999999 7777665444322 234444333332 23579999999999999999999999999
Q ss_pred EEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCc---EEEccC---cEEecCEEEEcccCCCccCcc
Q 018550 223 VHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNG---RVVSADVIMHCTGLTGTSTTT 285 (354)
Q Consensus 223 v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g---~~~~~D~vi~a~G~~~~~p~~ 285 (354)
|+++.+.+. +...+.+++.+ +++.++.|++++.++. +++.++ +++++|.||+|+|++ |++
T Consensus 206 Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~---p~~ 282 (476)
T 3lad_A 206 VTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRR---PVT 282 (476)
T ss_dssp EEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEE---ECC
T ss_pred EEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCc---ccC
Confidence 999999874 11223344455 8899999999985442 566654 678999999999999 666
Q ss_pred ccc--Cchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCCCcccc
Q 018550 286 LFL--KPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHRRLS 327 (354)
Q Consensus 286 ~~l--~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~~~ 327 (354)
+++ ...+.. ..+|||+|||+.. ...|+...+.++.+......
T Consensus 283 ~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~ 348 (476)
T 3lad_A 283 TDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQMN 348 (476)
T ss_dssp TTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCccccCccccCCCCEeeCCCcccCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCCCcccC
Confidence 542 221111 2349999999952 45677777888876554433
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=245.29 Aligned_cols=278 Identities=17% Similarity=0.153 Sum_probs=183.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (354)
++||+|||||++|+++|..|++.|.+|+|||+++.+||.|.+. +|.|.+.++... .+..+.. .. +++
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~--------g~~p~k~l~~~~~~~~~~~~--~~--~g~ 68 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRV--------GCIPSKALLETTERIYEAKK--GL--LGA 68 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHH--CC--TTE
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCcccee--------cchhHHHHHHHHHHHHHHhh--hc--CCc
Confidence 3789999999999999999999999999999988899999873 566554333221 1111111 10 111
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
. .... ..+...+. ..+.+.+++.+++ +..+..+ .+ +. +.+.+.+ ++
T Consensus 69 ~---~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~--~~~g~~~-~i--~~-~~~~v~~-~g--- 125 (455)
T 2yqu_A 69 K---VKGV----------ELDLPALMAHKDKVVQANTQGVEFLFKKNGIA--RHQGTAR-FL--SE-RKVLVEE-TG--- 125 (455)
T ss_dssp E---ECCE----------EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESCEE-ES--SS-SEEEETT-TC---
T ss_pred c---cCCC----------ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEE-Ee--cC-CeEEEee-CC---
Confidence 0 0000 00112222 2234555666887 7776543 22 22 4444433 33
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.++.||+||+||| +.|+.|++++.... ..+++....... ..+++++|||+|++|+|+|..|++.|.+|+++++.
T Consensus 126 -~~~~~d~lviAtG--~~p~~~~~~g~~~~--~v~~~~~~~~~~-~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~ 199 (455)
T 2yqu_A 126 -EELEARYILIATG--SAPLIPPWAQVDYE--RVVTSTEALSFP-EVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYM 199 (455)
T ss_dssp -CEEEEEEEEECCC--EEECCCTTBCCCSS--SEECHHHHTCCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred -EEEEecEEEECCC--CCCCCCCCCCCCcC--cEechHHhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 3799999999999 78888887775431 234443333322 24689999999999999999999999999999987
Q ss_pred CC----------ccccccCCCCC-CeEEecceeEEecCC-c--EEEccCcEEecCEEEEcccCCCccCcccc--cCchhh
Q 018550 230 VA----------DETHEKQPGYD-NMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGLTGTSTTTLF--LKPMAL 293 (354)
Q Consensus 230 ~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~--l~~~~~ 293 (354)
+. +...+.+++.+ +++.++.|+++..++ . +.+++|+++++|.||+|+|+. |++++ ++..+.
T Consensus 200 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~---p~~~~l~~~~~g~ 276 (455)
T 2yqu_A 200 DRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRR---PYTEGLSLENAGL 276 (455)
T ss_dssp SSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE---ECCTTCCGGGGTC
T ss_pred CccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCC---cCCCCCChhhcCC
Confidence 64 11222333344 889999999998543 2 455678899999999999999 65554 222211
Q ss_pred h----------------hceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 294 L----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 294 ~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
. ..+||++|||... ...|+...+.++.+..
T Consensus 277 ~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 328 (455)
T 2yqu_A 277 STDERGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGF 328 (455)
T ss_dssp CCCTTSCCCCCTTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCCcEeECCCcccCCCCEEEEecCCCCccCHHHHHHhHHHHHHHHcCCC
Confidence 1 2359999999873 3567777788887643
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-31 Score=243.19 Aligned_cols=281 Identities=18% Similarity=0.248 Sum_probs=181.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||++|+++|..|++.|.+|+|||++ .+||+|.+. +|.|.+.++............+.. .++
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~--------g~ip~k~l~~~~~~~~~~~~~~~~-~g~- 72 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNV--------GCVPSKIMIRAAHIAHLRRESPFD-GGI- 72 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHH--------SHHHHHHHHHHHHHHHHHHCCTTT-TTS-
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCC--------CccchHHHHHHHHHHHHHhhhhhc-CCc-
Confidence 479999999999999999999999999999997 799999874 666654433322221111111110 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHH-------HHHH-----HHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVL-------RYLQ-----NFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~-----~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
+.. ........+. ++++ +.+++. +++ +..+ ++..++ . +.+.+.+.++.
T Consensus 73 --~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~g-~~~~~~--~-~~~~v~~~~g~- 133 (467)
T 1zk7_A 73 --AAT----------VPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAIT--VVHG-EARFKD--D-QSLTVRLNEGG- 133 (467)
T ss_dssp --CCC----------CCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEE--EEEE-EEEEEE--T-TEEEEEETTSS-
T ss_pred --cCC----------CCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeE--EEEE-EEEEcc--C-CEEEEEeCCCc-
Confidence 000 0001112222 2222 222223 444 5443 455443 2 55666665442
Q ss_pred ceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
..++.||+||+||| +.|+.|+++|.+.. ..++..+.... ...+++++|||+|++|+|+|..|++.|.+|+++++
T Consensus 134 -~~~~~~d~lviAtG--s~p~~p~i~G~~~~--~~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~ 207 (467)
T 1zk7_A 134 -ERVVMFDRCLVATG--ASPAVPPIPGLKES--PYWTSTEALAS-DTIPERLAVIGSSVVALELAQAFARLGSKVTVLAR 207 (467)
T ss_dssp -EEEEECSEEEECCC--EEECCCCCTTTTTS--CCBCHHHHHHC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred -eEEEEeCEEEEeCC--CCCCCCCCCCCCcC--ceecHHHHhcc-cccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEE
Confidence 24799999999999 88999999887542 12222222221 12479999999999999999999999999999998
Q ss_pred cCC---------ccccccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCCccCccccc--Cchhh
Q 018550 229 SVA---------DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFL--KPMAL 293 (354)
Q Consensus 229 ~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~ 293 (354)
.+. +...+.+++.+ +++.++.|+++..++. |.++ +.++++|.||+|+|+. |+++++ ...+.
T Consensus 208 ~~~~l~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~---p~~~~l~l~~~gl 283 (467)
T 1zk7_A 208 NTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRT---PNTRSLALDAAGV 283 (467)
T ss_dssp SCTTTTSCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEE---ESCTTSCGGGGTC
T ss_pred CCccCCCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCC---cCCCcCCchhcCC
Confidence 763 11222333444 8888999999985443 4444 5689999999999999 666542 22211
Q ss_pred h----------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 294 L----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 294 ~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
. ..+|||+|||+.. ...|+...+.++.+.
T Consensus 284 ~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 334 (467)
T 1zk7_A 284 TVNAQGAIVIDQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 334 (467)
T ss_dssp CBCTTSCBCCCTTCBCSSTTEEECSTTBSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCEEECCCcccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 1 2349999999873 346777778788664
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-31 Score=244.47 Aligned_cols=285 Identities=15% Similarity=0.153 Sum_probs=185.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+|||||++|+++|..|+++|++|+|||+ +.+||+|.+. +|.|.+.+...........+.+...+...
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~--------gcip~k~l~~~~~~~~~~~~~~~~g~~~~ 75 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIR--------GCVPKKLYVYASQFAEHFEDAAGFGWTVG 75 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHGGGGTEEEC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccccc--------CchhhHHHHHHHHHHHHHHHHHhcCcccC
Confidence 36999999999999999999999999999999 6899999873 66666544433322222222211111100
Q ss_pred --CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEe-ecCCceEEEEeCEE
Q 018550 82 --AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEEETFDAV 158 (354)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~~~~~~d~v 158 (354)
.+.+..... . .......+..++.....+.+++ +..+ ++..+ +...+.+. ++ ..+.+|++
T Consensus 76 ~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i-----~~~~v~~~~~~----~~~~~d~l 137 (463)
T 4dna_A 76 ESRFDWAKLVA----A--KEQEIARLEGLYRKGLANAGAE--ILDT-RAELA-----GPNTVKLLASG----KTVTAERI 137 (463)
T ss_dssp CCEECHHHHHH----H--HHHHHHHHHHHHHHHHHHHTCE--EEES-CEEES-----SSSEEEETTTT----EEEEEEEE
T ss_pred CCCcCHHHHHH----H--HHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEe-----eCCEEEEecCC----eEEEeCEE
Confidence 000000000 0 0000013334445555666777 5554 34333 22355552 22 48999999
Q ss_pred EEeeCCCCCcc-cCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC------
Q 018550 159 VVCNGHFSVPR-LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------ 231 (354)
Q Consensus 159 IlAtG~~s~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~------ 231 (354)
|+||| +.|. .|.++|.+. ..++...... ...+++++|||+|++|+|+|..+++.|.+|+++.+.+.
T Consensus 138 viAtG--~~p~~~p~i~G~~~----~~~~~~~~~~-~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~ 210 (463)
T 4dna_A 138 VIAVG--GHPSPHDALPGHEL----CITSNEAFDL-PALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFD 210 (463)
T ss_dssp EECCC--EEECCCTTSTTGGG----CBCHHHHTTC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSC
T ss_pred EEecC--CCcccCCCCCCccc----cccHHHHhhh-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccC
Confidence 99999 8888 888888653 1222222222 23579999999999999999999999999999998764
Q ss_pred ----ccccccCCCCC-CeEEecceeEEecC--C--cEE-EccCcEEecCEEEEcccCCCccCccccc--Cchhhh-----
Q 018550 232 ----DETHEKQPGYD-NMWLHSMVERANED--G--TVV-FRNGRVVSADVIMHCTGLTGTSTTTLFL--KPMALL----- 294 (354)
Q Consensus 232 ----~~~~~~l~~~~-~~~~~~~v~~v~~~--~--~v~-~~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~~~----- 294 (354)
+...+.+++.+ +++.++.|+++..+ + .|. +.+|+ +++|.||+|+|+. |+++++ +..+..
T Consensus 211 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~---p~~~~l~l~~~g~~~~~~G 286 (463)
T 4dna_A 211 QDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRM---PNTNGLGLEAAGVRTNELG 286 (463)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEE---ESCTTSSTGGGTCCBCTTS
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcc---cCCCCCCccccCceECCCC
Confidence 11222334444 88999999999854 3 266 66777 9999999999999 776653 222221
Q ss_pred -----------hceeeeecccchh------hHHHHHHHhhhccCCCc
Q 018550 295 -----------LWMTIVLGHCTST------FFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 295 -----------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~ 324 (354)
..+|||+|||+.. ...|+...+.++.+...
T Consensus 287 ~i~vd~~~~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~ 333 (463)
T 4dna_A 287 AIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNP 333 (463)
T ss_dssp CBCCCTTCBCSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSSCC
T ss_pred CEeECcCCCCCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCCCC
Confidence 2349999999972 35677777888876543
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=245.41 Aligned_cols=285 Identities=14% Similarity=0.154 Sum_probs=182.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
+||+|||||++|+++|..|+++|.+|+|||+ +.+||.|.+. +|.|.+.++............+...+....
T Consensus 27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~--------gcip~k~l~~~a~~~~~~~~~~~~g~~~~~ 97 (484)
T 3o0h_A 27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIR--------GCVPKKLYFYASQYAQEFSKSIGFGWKYAD 97 (484)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHHGGGTBCCCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceecc--------CccccHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 6999999999999999999999999999999 6899999874 666665444333222211111111110000
Q ss_pred --CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEe-ecCCceEEEEeCEEE
Q 018550 83 --YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEEETFDAVV 159 (354)
Q Consensus 83 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~~~~~~d~vI 159 (354)
+.+.... .. .......+..++.....+.+++ +..+ ++..++ . ..+.+. ++ ..+.+|++|
T Consensus 98 ~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~i~--~---~~v~v~~~~----~~~~~d~lv 159 (484)
T 3o0h_A 98 PIFNWEKLV----AA--KNKEISRLEGLYREGLQNSNVH--IYES-RAVFVD--E---HTLELSVTG----ERISAEKIL 159 (484)
T ss_dssp CEECHHHHH----HH--HHHHHHHHHHHHHHHHHHTTCE--EEES-CEEEEE--T---TEEEETTTC----CEEEEEEEE
T ss_pred CccCHHHHH----HH--HHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEee--C---CEEEEecCC----eEEEeCEEE
Confidence 0000000 00 0000023334445555666777 5554 444443 1 245553 33 389999999
Q ss_pred EeeCCCCCcc-cCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-------
Q 018550 160 VCNGHFSVPR-LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------- 231 (354)
Q Consensus 160 lAtG~~s~~~-~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~------- 231 (354)
+||| +.|. .|.++|.+. ..++..+... ...+++++|||+|++|+|+|..+++.|.+|+++.+.+.
T Consensus 160 iAtG--~~p~~~p~i~G~~~----~~~~~~~~~~-~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~ 232 (484)
T 3o0h_A 160 IATG--AKIVSNSAIKGSDL----CLTSNEIFDL-EKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDY 232 (484)
T ss_dssp ECCC--EEECCC--CBTGGG----SBCTTTGGGC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCH
T ss_pred EccC--CCcccCCCCCCccc----cccHHHHHhH-HhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCH
Confidence 9999 7888 888888653 1222222221 23578999999999999999999999999999998764
Q ss_pred ---ccccccCCCCC-CeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCCccCcccccC--chhhh--------
Q 018550 232 ---DETHEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLK--PMALL-------- 294 (354)
Q Consensus 232 ---~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~--~~~~~-------- 294 (354)
....+.+++.+ +++.++.|++++.++. |++.+|+++++|.||+|+|+. |+++++. ..+..
T Consensus 233 ~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~---p~~~~l~l~~~g~~~~~~G~i~ 309 (484)
T 3o0h_A 233 DLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRV---PNTTGLGLERAGVKVNEFGAVV 309 (484)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEE---ECCTTCCHHHHTCCBCTTSCBC
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCC---cCCCCCChhhcCceECCCCCEe
Confidence 11222233344 8888999999986532 777888899999999999999 6666531 11111
Q ss_pred --------hceeeeecccch------hhHHHHHHHhhhccCCCc
Q 018550 295 --------LWMTIVLGHCTS------TFFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 295 --------~~~i~a~GD~~~------~~~~~~~~~~~~~~~~~~ 324 (354)
..+|||+|||+. ....|+...+.++.+...
T Consensus 310 vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~ 353 (484)
T 3o0h_A 310 VDEKMTTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENTS 353 (484)
T ss_dssp CCTTSBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC---
T ss_pred ECCCCCCCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 234999999998 245677777888876543
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=235.34 Aligned_cols=254 Identities=17% Similarity=0.171 Sum_probs=176.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+|||||++|+++|..|++.|. +|+|||+++.++..... ....+...
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~---------------------~~~~~~~~------- 58 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPP---------------------LSKDFMAH------- 58 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGG---------------------GGTHHHHH-------
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCC---------------------CCHHHhCC-------
Confidence 5789999999999999999999998 59999997643210000 00000000
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
.. .. ++ ++. .+.+.+++ ++.+++|+.++. ..+++.+.++. ++.||+||
T Consensus 59 --~~--~~----------------~~--~~~-~~~~~~v~--~~~~~~v~~i~~---~~~~v~~~~g~----~~~~d~lv 106 (408)
T 2gqw_A 59 --GD--AE----------------KI--RLD-CKRAPEVE--WLLGVTAQSFDP---QAHTVALSDGR----TLPYGTLV 106 (408)
T ss_dssp --CC--GG----------------GS--BCC-CTTSCSCE--EEETCCEEEEET---TTTEEEETTSC----EEECSEEE
T ss_pred --Cc--hh----------------hh--hHH-HHHHCCCE--EEcCCEEEEEEC---CCCEEEECCCC----EEECCEEE
Confidence 00 00 00 000 12345677 888888999875 34677776654 79999999
Q ss_pred EeeCCCCCcccCCC-CCCCCCCcceeecccCC-----CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--
Q 018550 160 VCNGHFSVPRLAQV-PGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~-~g~~~~~~~~~~~~~~~-----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-- 231 (354)
+||| +.|+.|++ +|.+. .+++..... ......+++++|||+|.+|+|+|..|++.|.+|+++++.+.
T Consensus 107 iAtG--~~~~~~~i~~G~~~---~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 181 (408)
T 2gqw_A 107 LATG--AAPRALPTLQGATM---PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM 181 (408)
T ss_dssp ECCC--EEECCCGGGTTCSS---CEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred ECCC--CCCCCCCccCCCCC---cEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc
Confidence 9999 78888888 88651 222221111 11123479999999999999999999999999999999764
Q ss_pred c---------cccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCchhhh-------
Q 018550 232 D---------ETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL------- 294 (354)
Q Consensus 232 ~---------~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------- 294 (354)
. ...+.+++.+ +++.++.|+++. ++.|++++|+++++|.||+|+|++ |++++++..+..
T Consensus 182 ~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~~v~~~~g~~i~~D~vi~a~G~~---p~~~l~~~~gl~~~~gi~V 257 (408)
T 2gqw_A 182 SRAAPATLADFVARYHAAQGVDLRFERSVTGSV-DGVVLLDDGTRIAADMVVVGIGVL---ANDALARAAGLACDDGIFV 257 (408)
T ss_dssp TTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-TTEEEETTSCEEECSEEEECSCEE---ECCHHHHHHTCCBSSSEEC
T ss_pred ccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-CCEEEECCCCEEEcCEEEECcCCC---ccHHHHHhCCCCCCCCEEE
Confidence 1 1122234445 899999999998 446888899999999999999999 777776544321
Q ss_pred -------hceeeeecccchh----------------hHHHHHHHhhhccCCCc
Q 018550 295 -------LWMTIVLGHCTST----------------FFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 295 -------~~~i~a~GD~~~~----------------~~~~~~~~~~~~~~~~~ 324 (354)
..+|||+|||+.. ...|+...|.++.+...
T Consensus 258 d~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~ 310 (408)
T 2gqw_A 258 DAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA 310 (408)
T ss_dssp CTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS
T ss_pred CCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC
Confidence 2459999999863 24566677888876544
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-30 Score=238.80 Aligned_cols=287 Identities=21% Similarity=0.220 Sum_probs=182.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC-----CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG-----HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g-----~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
++|+|||||++|+++|..|++.| .+|+|||+.+.+| |....-. +...+..+...+......|...
T Consensus 31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~--------~~~~~~~~~~~~l~~~~~p~~~ 100 (463)
T 3s5w_A 31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLV--------SQSELQISFLKDLVSLRNPTSP 100 (463)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCC--------SSCBCSSCTTSSSSTTTCTTCT
T ss_pred CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCC--------CCCcCCcchhhccccccCCCCC
Confidence 48999999999999999999999 9999999988776 3331000 0000000000000000111111
Q ss_pred ccccCCCCCccCC-CCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC--CCcE--EEEEeecCCceEE
Q 018550 78 MGFQAYPFVARNY-EGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKW--KVKSRKKDDVVEE 152 (354)
Q Consensus 78 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~--~v~~~~g~~~~~~ 152 (354)
+.+.++....... ........|+.+.++.+|+.+++++++.. ++++++|++++..+ ++.| ++++.++.+...+
T Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~ 178 (463)
T 3s5w_A 101 YSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQ--SRYGEEVLRIEPMLSAGQVEALRVISRNADGEELV 178 (463)
T ss_dssp TSHHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTT--EEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEE
T ss_pred CChhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEecCCCceEEEEEEEecCCCceEE
Confidence 1111000000000 00012345677899999999999998888 99999999999862 1444 6777776555558
Q ss_pred EEeCEEEEeeCCCCCcccCCCCCCCCCCc--ceeecccCCCC-CCC-----CCCeEEEEccCCCHHHHHHHHhcc--CCE
Q 018550 153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPG--KQMHSHNYRIP-NPF-----QDQVVILIGHYASGLDIKRDLAGF--AKE 222 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~~p~~~g~~~~~~--~~~~~~~~~~~-~~~-----~~~~v~ViG~G~~g~e~a~~l~~~--g~~ 222 (354)
+.||+||+||| +.|+.|.. ...+.+ ..+++..+... ... .+++|+|||+|.+|+|+|..|++. +.+
T Consensus 179 ~~~d~lVlAtG--~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~ 254 (463)
T 3s5w_A 179 RTTRALVVSPG--GTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQ 254 (463)
T ss_dssp EEESEEEECCC--CEECCCGG--GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEE
T ss_pred EEeCEEEECCC--CCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCe
Confidence 99999999999 67776652 223333 45666554331 222 579999999999999999999998 899
Q ss_pred EEEEEecCCc------------------------------cccccCC---------------------------CCCCeE
Q 018550 223 VHIASRSVAD------------------------------ETHEKQP---------------------------GYDNMW 245 (354)
Q Consensus 223 v~~~~r~~~~------------------------------~~~~~l~---------------------------~~~~~~ 245 (354)
|++++|++.- ..++.+. ...+++
T Consensus 255 Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~ 334 (463)
T 3s5w_A 255 ADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFR 334 (463)
T ss_dssp EEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEE
T ss_pred EEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 9999998730 0011111 123788
Q ss_pred EecceeEEecCCc---EEEc---cCc--EEecCEEEEcccCCCccCcccccCchhhh------------------hceee
Q 018550 246 LHSMVERANEDGT---VVFR---NGR--VVSADVIMHCTGLTGTSTTTLFLKPMALL------------------LWMTI 299 (354)
Q Consensus 246 ~~~~v~~v~~~~~---v~~~---~g~--~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------------------~~~i~ 299 (354)
.++.|+++..++. |++. +|+ ++++|.||+|||++|+ |..+++.+.... ..+||
T Consensus 335 ~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~-~~~~~l~~l~~~~g~i~v~~~~~~~~~~~~~~~If 413 (463)
T 3s5w_A 335 CMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQ-LHRQLLEPLAEYLGDHEIGRDYRLQTDERCKVAIY 413 (463)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECC-C-CTTTGGGGGGBC--CCCTTSBCCBCTTBCSEEE
T ss_pred eCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCC-CccchhHHHHHHhCCcccCcccccccCCCCCCeEE
Confidence 8899999875432 5555 664 4899999999999944 225555443211 12399
Q ss_pred eecccch
Q 018550 300 VLGHCTS 306 (354)
Q Consensus 300 a~GD~~~ 306 (354)
++|||..
T Consensus 414 a~G~~~~ 420 (463)
T 3s5w_A 414 AQGFSQA 420 (463)
T ss_dssp ESSCCHH
T ss_pred EcCCCcc
Confidence 9999886
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-30 Score=238.28 Aligned_cols=274 Identities=16% Similarity=0.170 Sum_probs=186.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCc--EEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHT--VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~--v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+|||||++|+++|..|+++|++ |+|||+++.++..... +.......
T Consensus 9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~-------------------------l~~~~~~~--- 60 (415)
T 3lxd_A 9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPP-------------------------LSKEYLAR--- 60 (415)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGG-------------------------GGTTTTTT---
T ss_pred CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCccc-------------------------CCHHHHcC---
Confidence 36899999999999999999999987 9999997644211100 00000000
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
... ...+..+..++..+.+++ ++.+++|+.++. ..+.+.+.++. .+.||+||
T Consensus 61 --~~~-----------------~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~---~~~~v~~~~g~----~~~~d~lv 112 (415)
T 3lxd_A 61 --EKT-----------------FERICIRPAQFWEDKAVE--MKLGAEVVSLDP---AAHTVKLGDGS----AIEYGKLI 112 (415)
T ss_dssp --SSC-----------------SGGGBSSCHHHHHHTTEE--EEETCCEEEEET---TTTEEEETTSC----EEEEEEEE
T ss_pred --CCC-----------------HHHhccCCHHHHHHCCcE--EEeCCEEEEEEC---CCCEEEECCCC----EEEeeEEE
Confidence 000 011222224445567887 888889999976 34567777664 89999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCC-----CCCCC-CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQ-DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~-----~~~~~-~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-- 231 (354)
+||| +.|+.|+++|.+.. .........+ ..... +++++|||+|.+|+|+|..+.+.|.+|+++++.+.
T Consensus 113 lAtG--~~~~~~~i~g~~~~--~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l 188 (415)
T 3lxd_A 113 WATG--GDPRRLSCVGADLA--GVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL 188 (415)
T ss_dssp ECCC--EECCCCBTTSSCCB--TEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred EccC--CccCCCCCCCcccc--CEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh
Confidence 9999 88999988886531 1121111100 00113 79999999999999999999999999999999874
Q ss_pred ---------ccccccCCCCC-CeEEecceeEEecC-Cc---EEEccCcEEecCEEEEcccCCCccCcccccCchhhh---
Q 018550 232 ---------DETHEKQPGYD-NMWLHSMVERANED-GT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL--- 294 (354)
Q Consensus 232 ---------~~~~~~l~~~~-~~~~~~~v~~v~~~-~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~--- 294 (354)
+...+.+++.+ +++.++.|+++..+ +. |++++|+++++|.||+|+|+. |++++++..+..
T Consensus 189 ~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~---p~~~l~~~~gl~~~~ 265 (415)
T 3lxd_A 189 ARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIV---PCVGALISAGASGGN 265 (415)
T ss_dssp TTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCE---ESCHHHHHTTCCCSS
T ss_pred hhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCc---cChHHHHhCCCCcCC
Confidence 11122234444 89999999999854 32 778899999999999999999 777776543322
Q ss_pred -----------hceeeeecccchh-----------------hHHHHHHHhhhccCCCcccccCCCCCccccC
Q 018550 295 -----------LWMTIVLGHCTST-----------------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASG 338 (354)
Q Consensus 295 -----------~~~i~a~GD~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (354)
..+|||+|||+.. ...|+...|.++.|....+...|.+++..++
T Consensus 266 gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~p~~~~~~~~ 337 (415)
T 3lxd_A 266 GVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPVPYKATPWFWSNQYD 337 (415)
T ss_dssp SEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCCCCCCCCCEEEEEETT
T ss_pred CEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCCCCCCCCCeeEeeeCC
Confidence 2459999999863 2355667788888766544444444444333
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-30 Score=246.42 Aligned_cols=264 Identities=20% Similarity=0.302 Sum_probs=184.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+|||||++|+++|..|++. |.+|+|||+++.++ +... . .+..
T Consensus 36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~--~~~~--------------------~-------lp~~--- 83 (588)
T 3ics_A 36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS--FANC--------------------G-------LPYY--- 83 (588)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS--BCGG--------------------G-------HHHH---
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc--ccCC--------------------C-------Cchh---
Confidence 57999999999999999999998 89999999987553 1000 0 0000
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+.+... +....+..++.++.+++++. ++++++|++++..+ +.+.+...+ .+....+.||+||
T Consensus 84 ~~g~~~--------------~~~~~~~~~~~~~~~~~gi~--v~~~~~V~~id~~~-~~v~v~~~~-~g~~~~~~~d~lv 145 (588)
T 3ics_A 84 IGGVIT--------------ERQKLLVQTVERMSKRFNLD--IRVLSEVVKINKEE-KTITIKNVT-TNETYNEAYDVLI 145 (588)
T ss_dssp HTTSSC--------------CGGGGBSSCHHHHHHHTTCE--EECSEEEEEEETTT-TEEEEEETT-TCCEEEEECSEEE
T ss_pred hcCcCC--------------ChHHhhccCHHHHHHhcCcE--EEECCEEEEEECCC-CEEEEeecC-CCCEEEEeCCEEE
Confidence 000000 00122345667777788998 89999999998755 545444311 1223578999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCCC-------CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-------PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~- 231 (354)
+||| +.|+.|+++|..... ..+......+.. ...+++++|||+|.+|+|+|..|++.|.+|+++.+.+.
T Consensus 146 iAtG--~~p~~p~i~G~~~~~-~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 222 (588)
T 3ics_A 146 LSPG--AKPIVPSIPGIEEAK-ALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQV 222 (588)
T ss_dssp ECCC--EEECCCCCTTTTTCT-TEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred ECCC--CCCCCCCCCCcccCC-CeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence 9999 899999999874322 223322211110 13579999999999999999999999999999998764
Q ss_pred ---------ccccccCCCCC-CeEEecceeEEecCC-cEEEccCcEEecCEEEEcccCCCccCcccccCchhhh------
Q 018550 232 ---------DETHEKQPGYD-NMWLHSMVERANEDG-TVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL------ 294 (354)
Q Consensus 232 ---------~~~~~~l~~~~-~~~~~~~v~~v~~~~-~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------ 294 (354)
+...+.+++.+ +++.++.|++++.++ .|++.+|+++++|.||+|+|+. |++++++..+..
T Consensus 223 l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~---p~~~~l~~~g~~~~~~g~ 299 (588)
T 3ics_A 223 MPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQ---PESSLAKGAGLALGVRGT 299 (588)
T ss_dssp CTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEE---ECCHHHHHTTCCBCGGGC
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCC---CChHHHHhcCceEcCCCC
Confidence 11222334444 889999999998643 3888999999999999999999 777666543322
Q ss_pred ----------hceeeeecccch----------------hhHHHHHHHhhhccC
Q 018550 295 ----------LWMTIVLGHCTS----------------TFFRQSWHQAFHLLG 321 (354)
Q Consensus 295 ----------~~~i~a~GD~~~----------------~~~~~~~~~~~~~~~ 321 (354)
..+|||+|||+. ....|+...+.++.+
T Consensus 300 i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 300 IKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHG 352 (588)
T ss_dssp BCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred EEECCccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcC
Confidence 134999999983 135667777888876
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-31 Score=243.81 Aligned_cols=276 Identities=15% Similarity=0.194 Sum_probs=180.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
++||+|||||++|+++|..|+++|.+|+|||++ .+||+|.+. +|.|.+.++.............
T Consensus 20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~--------gc~p~k~l~~~~~~~~~~~~~~------- 83 (478)
T 3dk9_A 20 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNV--------GCVPKKVMWNTAVHSEFMHDHA------- 83 (478)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHTTTT-------
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccccc--------CccchHHHHHHHHHHHHHHHHH-------
Confidence 379999999999999999999999999999975 899999874 6666654444332222111111
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCce
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV 150 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~ 150 (354)
.+.+... ....++..+.++ +.......+++ +..+. +..++ . ..+.+.. ++
T Consensus 84 ~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~-~~~~~--~-~~~~v~~-~g---- 144 (478)
T 3dk9_A 84 DYGFPSC--------EGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIE--IIRGH-AAFTS--D-PKPTIEV-SG---- 144 (478)
T ss_dssp TTTSCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESC-EEECS--C-SSCEEEE-TT----
T ss_pred hcCccCC--------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEeE-EEEee--C-CeEEEEE-CC----
Confidence 1111110 111222333333 33334445666 55432 33322 1 4456653 32
Q ss_pred EEEEeCEEEEeeCCCCCcccC---CCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEE
Q 018550 151 EEETFDAVVVCNGHFSVPRLA---QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p---~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~ 227 (354)
.++.||+||+||| +.|+.| +++|.+. ..++..+... ...+++++|||+|++|+|+|..|++.|.+|++++
T Consensus 145 ~~~~~d~lviAtG--~~p~~p~~~~i~G~~~----~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~ 217 (478)
T 3dk9_A 145 KKYTAPHILIATG--GMPSTPHESQIPGASL----GITSDGFFQL-EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMI 217 (478)
T ss_dssp EEEECSCEEECCC--EEECCCCTTTSTTGGG----SBCHHHHTTC-CSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEeeEEEEccC--CCCCCCCcCCCCCCce----eEchHHhhch-hhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 3799999999999 889888 8888652 1222222222 2246899999999999999999999999999999
Q ss_pred ecCC----------ccccccCCCCC-CeEEecceeEEecC--C-c--EEEcc---C----cEEecCEEEEcccCCCccCc
Q 018550 228 RSVA----------DETHEKQPGYD-NMWLHSMVERANED--G-T--VVFRN---G----RVVSADVIMHCTGLTGTSTT 284 (354)
Q Consensus 228 r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~--~-~--v~~~~---g----~~~~~D~vi~a~G~~~~~p~ 284 (354)
+.+. +...+.+++.+ +++.++.|++++.+ + . +.+.+ | +++++|.||+|+|++ |+
T Consensus 218 ~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~---p~ 294 (478)
T 3dk9_A 218 RHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRV---PN 294 (478)
T ss_dssp SSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEE---ES
T ss_pred eCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccc---cC
Confidence 9764 11223344444 88888999998743 3 1 55554 2 578999999999999 66
Q ss_pred cccc--Cchhhh----------------hceeeeecccchh------hHHHHHHHhhhccCC
Q 018550 285 TLFL--KPMALL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGY 322 (354)
Q Consensus 285 ~~~l--~~~~~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~ 322 (354)
+++| +..+.. ..+|||+|||+.. ...|+...+.++.+.
T Consensus 295 ~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 295 TKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY 356 (478)
T ss_dssp CTTSCGGGGTCCBCTTCCBCCCTTCBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCchhcCCeeCCCCCEeeCCCcccCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCC
Confidence 6632 222221 1349999999952 356677778888765
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-30 Score=240.44 Aligned_cols=273 Identities=16% Similarity=0.157 Sum_probs=171.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+|||||++|+++|..|++. |.+|+|||+++.++ +... ..+ . + ...
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~--~~~~-gl~--------~--------~------~~g---- 53 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS--YGGC-GIP--------Y--------Y------VSG---- 53 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc--cccc-ccc--------h--------h------hcC----
Confidence 47999999999999999999999 89999999987653 1100 000 0 0 000
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
.+. . ....++....+..+...+.++.+++ ++++++|++++... +.+.+.... .+....+.||+||
T Consensus 54 --~~~--~-------~~~~~~~~~~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~-~~v~~~~~~-~g~~~~~~~d~lv 118 (472)
T 3iwa_A 54 --EVS--N-------IESLQATPYNVVRDPEFFRINKDVE--ALVETRAHAIDRAA-HTVEIENLR-TGERRTLKYDKLV 118 (472)
T ss_dssp --------------------------------------CE--EECSEEEEEEETTT-TEEEEEETT-TCCEEEEECSEEE
T ss_pred --CCC--c-------hHHhccccchhccCHHHHhhhcCcE--EEECCEEEEEECCC-CEEEEeecC-CCCEEEEECCEEE
Confidence 000 0 0000011122455566666667888 88999999998755 444444311 1223578999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCC-------CCCCCCCeEEEEccCCCHHHHHHHHhcc-CCEEEEEEecCC
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-------PNPFQDQVVILIGHYASGLDIKRDLAGF-AKEVHIASRSVA 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~v~ViG~G~~g~e~a~~l~~~-g~~v~~~~r~~~ 231 (354)
+||| +.|+.|+++|.+.. ...+.....+ .....+++++|||+|.+|+|+|..|++. |.+|+++.+.+.
T Consensus 119 iAtG--~~p~~p~i~G~~~~--~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~ 194 (472)
T 3iwa_A 119 LALG--SKANRPPVEGMDLA--GVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQ 194 (472)
T ss_dssp ECCC--EEECCCSCTTTTSB--TEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSS
T ss_pred EeCC--CCcCCCCCCCCCCC--CEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCc
Confidence 9999 88999999887631 2222211110 0113478999999999999999999999 999999998764
Q ss_pred --c---------cccccCCCCC-CeEEecceeEEec-CCc--EEEccCcEEecCEEEEcccCCCccCcccccCchhhh--
Q 018550 232 --D---------ETHEKQPGYD-NMWLHSMVERANE-DGT--VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL-- 294 (354)
Q Consensus 232 --~---------~~~~~l~~~~-~~~~~~~v~~v~~-~~~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~-- 294 (354)
. ...+.+++.+ +++.++.|+++.. ++. +++.+|+++++|.||+|+|+. |+++++...+..
T Consensus 195 ~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~---p~~~l~~~~gl~~~ 271 (472)
T 3iwa_A 195 IMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVS---PNTQLARDAGLELD 271 (472)
T ss_dssp SSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEE---ECCHHHHHHTCCBC
T ss_pred ccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCC---cCHHHHHhCCccCC
Confidence 1 1122334444 8899999999986 444 667888999999999999999 777665433322
Q ss_pred --------------hceeeeecccch----------------hhHHHHHHHhhhccCCCcc
Q 018550 295 --------------LWMTIVLGHCTS----------------TFFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 295 --------------~~~i~a~GD~~~----------------~~~~~~~~~~~~~~~~~~~ 325 (354)
..+|||+|||+. ....|+...+.++.|....
T Consensus 272 ~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~ 332 (472)
T 3iwa_A 272 PRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDAT 332 (472)
T ss_dssp TTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCEEECCCcccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCcc
Confidence 134999999982 2456778888888776543
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-30 Score=241.59 Aligned_cols=278 Identities=17% Similarity=0.215 Sum_probs=182.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (354)
++||+|||||++|+++|..|++.|.+|+|||+ +.+||+|.+. +|.|.+.++... .+..+........++
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~--------g~~Psk~l~~~~~~~~~~~~~~~~~~~g- 74 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNI--------GCIPSKALIHVAEQFHQASRFTEPSPLG- 74 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHTTSCCTTC-
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCc--------CcHhHHHHHHHHHHHHHHhhcccccccC-
Confidence 47899999999999999999999999999999 6899999873 666655443322 222222110000011
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
++.. ....++..+..+ +.+.+++.+++ ++.++.+. + +. +++.+.+
T Consensus 75 --~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~-~--~~---~~v~v~~---- 130 (458)
T 1lvl_A 75 --ISVA----------SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVK--VVHGWAKV-L--DG---KQVEVDG---- 130 (458)
T ss_dssp --CCCC----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EECSCEEE-E--ET---TEEEETT----
T ss_pred --cccC----------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEEEEEE-c--cC---CEEEEee----
Confidence 1110 011122444333 33455667887 77766543 3 22 3455543
Q ss_pred eEEEEeCEEEEeeCCCCCcccCC-CCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
.++.||+||+||| +.|+.|+ ++ .+ ...+++.+..... ..+++++|||+|++|+|+|..|++.|.+|+++++
T Consensus 131 -~~~~~d~lviATG--s~p~~~~~~~-~~---~~v~~~~~~~~~~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~ 202 (458)
T 1lvl_A 131 -QRIQCEHLLLATG--SSSVELPMLP-LG---GPVISSTEALAPK-ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEA 202 (458)
T ss_dssp -EEEECSEEEECCC--EEECCBTTBC-CB---TTEECHHHHTCCS-SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred -EEEEeCEEEEeCC--CCCCCCCCCC-cc---CcEecHHHHhhhh-ccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEc
Confidence 3799999999999 7787665 44 22 1344444433322 2578999999999999999999999999999999
Q ss_pred cCC----------ccccccCCCCC-CeEEecceeEEecCCcEEEc--cC--cEEecCEEEEcccCCCccCccccc--Cch
Q 018550 229 SVA----------DETHEKQPGYD-NMWLHSMVERANEDGTVVFR--NG--RVVSADVIMHCTGLTGTSTTTLFL--KPM 291 (354)
Q Consensus 229 ~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~--~g--~~~~~D~vi~a~G~~~~~p~~~~l--~~~ 291 (354)
.+. +...+.+++.+ +++.++.|+++.. +.+.+. +| +++++|.|++|+|++ |+++++ +..
T Consensus 203 ~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~v~v~~~~G~~~~i~~D~vv~a~G~~---p~~~~l~~~~~ 278 (458)
T 1lvl_A 203 RERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN-GCLLANDGKGGQLRLEADRVLVAVGRR---PRTKGFNLECL 278 (458)
T ss_dssp SSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET-TEEEEECSSSCCCEECCSCEEECCCEE---ECCSSSSGGGS
T ss_pred CCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe-CCEEEEECCCceEEEECCEEEECcCCC---cCCCCCCcHhc
Confidence 864 11122233444 8888999999987 435544 56 689999999999999 665542 222
Q ss_pred hh---------------hhceeeeecccchh------hHHHHHHHhhhccCCCcc
Q 018550 292 AL---------------LLWMTIVLGHCTST------FFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 292 ~~---------------~~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~~~ 325 (354)
+. ...+|||+|||+.. ...|+...+.++.+....
T Consensus 279 g~~~~~~~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~ 333 (458)
T 1lvl_A 279 DLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARR 333 (458)
T ss_dssp CCCEETTEECCCTTCBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCcccCCEEeECCCCcCCCCCEEEeeccCCCcccHHHHHHHHHHHHHHhcCCCcc
Confidence 11 12459999999873 356777788888764433
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-30 Score=243.40 Aligned_cols=284 Identities=17% Similarity=0.196 Sum_probs=181.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC--------CccceeecCCCCCCCCCCCCCCCCcccccccccchhcc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~--------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
.+||+|||||++|+++|..|++.|.+|+|||+.+ .+||+|.+. +|.|.+.+.....+.......
T Consensus 32 ~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~--------GciPsk~l~~~~~~~~~~~~~ 103 (519)
T 3qfa_A 32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV--------GCIPKKLMHQAALLGQALQDS 103 (519)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHH--------SHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCc--------CccchHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999999854 789999874 777776554443322222111
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHH-----------HHHHhCCcceEEeceEEEEEEEeCCCcEEEE
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----------FAREFGVDQVVRLHTEVLNARLVESNKWKVK 142 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~ 142 (354)
. .+.+... .....++..+.++.+. ..+..+++ +.. .++..++. ..+.+.
T Consensus 104 ~-------~~g~~~~-------~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~--~i~-g~a~~~d~---~~v~v~ 163 (519)
T 3qfa_A 104 R-------NYGWKVE-------ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVV--YEN-AYGQFIGP---HRIKAT 163 (519)
T ss_dssp H-------HTTBCCC-------SSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEC-SEEEEEET---TEEEEE
T ss_pred H-------hcCcccC-------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEeeC---CEEEEE
Confidence 1 1111100 0112233444444433 23334665 443 44444432 445554
Q ss_pred EeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCE
Q 018550 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (354)
Q Consensus 143 ~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~ 222 (354)
..++. ..++.||+||+||| +.|+.|+++|... ..+++...... ...+++++|||+|++|+|+|..|++.|.+
T Consensus 164 ~~~g~--~~~i~~d~lViATG--s~p~~p~i~G~~~---~~~t~~~~~~l-~~~~~~vvVIGgG~ig~E~A~~l~~~G~~ 235 (519)
T 3qfa_A 164 NNKGK--EKIYSAERFLIATG--ERPRYLGIPGDKE---YCISSDDLFSL-PYCPGKTLVVGASYVALECAGFLAGIGLD 235 (519)
T ss_dssp CTTCC--CCEEEEEEEEECCC--EEECCCCCTTHHH---HCBCHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred cCCCC--EEEEECCEEEEECC--CCcCCCCCCCccC---ceEcHHHHhhh-hhcCCeEEEECCcHHHHHHHHHHHHcCCe
Confidence 43332 34899999999999 8999999988654 22333222222 23467899999999999999999999999
Q ss_pred EEEEEecCC---------ccccccCCCCC-CeEEecceeEEec--C---Cc--EEE--ccC-c--EEecCEEEEcccCCC
Q 018550 223 VHIASRSVA---------DETHEKQPGYD-NMWLHSMVERANE--D---GT--VVF--RNG-R--VVSADVIMHCTGLTG 280 (354)
Q Consensus 223 v~~~~r~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~--~---~~--v~~--~~g-~--~~~~D~vi~a~G~~~ 280 (354)
|+++.++.. +...+.+++.+ +++.++.++++.. + +. +.+ .++ + ++++|.|++|+|++
T Consensus 236 Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~- 314 (519)
T 3qfa_A 236 VTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRD- 314 (519)
T ss_dssp EEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEE-
T ss_pred EEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCc-
Confidence 999998532 11223344444 7888877766652 1 22 322 345 2 56899999999999
Q ss_pred ccCccccc--Cchhhh-----------------hceeeeecccc-h------hhHHHHHHHhhhccCCCc
Q 018550 281 TSTTTLFL--KPMALL-----------------LWMTIVLGHCT-S------TFFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 281 ~~p~~~~l--~~~~~~-----------------~~~i~a~GD~~-~------~~~~~~~~~~~~~~~~~~ 324 (354)
||++++ ...+.. ..+|||+|||+ . ....|+...+.++.+...
T Consensus 315 --p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~~ 382 (519)
T 3qfa_A 315 --ACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGST 382 (519)
T ss_dssp --ESCSSSCSTTTTCCCCTTTCCBCCCTTSBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCCC
T ss_pred --ccCCCCChhhcCcEEcCCCCeEeeCCCCccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCC
Confidence 766652 222211 13499999998 3 235667777888876543
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-31 Score=243.90 Aligned_cols=275 Identities=15% Similarity=0.206 Sum_probs=181.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchh-ccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRV-NLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (354)
++||+|||||++|+++|..|++.|.+|+|||++ .+||+|.+. +|.|.+.++....+..... +.+...+..
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~--------gciP~k~l~~~a~~~~~~~~~~~~~g~~~ 74 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNV--------GCVPKKVMWHAAQIREAIHMYGPDYGFDT 74 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHHTTGGGGTEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccccc--------CccChHHHHHHHHHHHHHHHHHHhcCccC
Confidence 479999999999999999999999999999997 789999873 6776655443322211111 111100000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
... ..++..+. ..+...+.+.+++ +..+. +..++ . +++.+ ++
T Consensus 75 ~~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-~~~i~--~---~~v~~-~g--- 127 (450)
T 1ges_A 75 TIN---------------KFNWETLIASRTAYIDRIHTSYENVLGKNNVD--VIKGF-ARFVD--A---KTLEV-NG--- 127 (450)
T ss_dssp EEE---------------EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESC-CEEEE--T---TEEEE-TT---
T ss_pred CCC---------------ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEec--C---CEEEE-CC---
Confidence 000 00112222 2233334556777 66643 34443 2 24544 33
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.++.||+||+||| +.|+.|+++|.+. ..++..+... ...+++++|||+|.+|+|+|..|++.|.+|+++++.
T Consensus 128 -~~~~~d~lviAtG--s~p~~p~i~g~~~----~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~ 199 (450)
T 1ges_A 128 -ETITADHILIATG--GRPSHPDIPGVEY----GIDSDGFFAL-PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMF 199 (450)
T ss_dssp -EEEEEEEEEECCC--EEECCCCSTTGGG----SBCHHHHHHC-SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred -EEEEeCEEEECCC--CCCCCCCCCCccc----eecHHHhhhh-hhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 3799999999999 8899998888642 1222222111 124689999999999999999999999999999987
Q ss_pred CC----------ccccccCCCCC-CeEEecceeEEecC--C--cEEEccCcEEecCEEEEcccCCCccCccccc--Cchh
Q 018550 230 VA----------DETHEKQPGYD-NMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGLTGTSTTTLFL--KPMA 292 (354)
Q Consensus 230 ~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~--~--~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l--~~~~ 292 (354)
+. +...+.+++.+ +++.++.|+++..+ + .|++++|+++++|.||+|+|++ |++++| +..+
T Consensus 200 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~---p~~~~l~~~~~g 276 (450)
T 1ges_A 200 DAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGRE---PANDNINLEAAG 276 (450)
T ss_dssp SSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE---ESCTTSCHHHHT
T ss_pred CchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCC---cCCCCCCchhcC
Confidence 64 11122333444 88999999999854 2 2777888899999999999999 666632 2211
Q ss_pred hh----------------hceeeeecccchh------hHHHHHHHhhhccCCC
Q 018550 293 LL----------------LWMTIVLGHCTST------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 293 ~~----------------~~~i~a~GD~~~~------~~~~~~~~~~~~~~~~ 323 (354)
.. ..+|||+|||... ...|+...+.++.+..
T Consensus 277 l~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~ 329 (450)
T 1ges_A 277 VKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNK 329 (450)
T ss_dssp CCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred ceECCCCCEeECCCCccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 11 2349999999862 3567777788887643
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-31 Score=238.23 Aligned_cols=251 Identities=20% Similarity=0.274 Sum_probs=173.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
.+|+|||||+||+++|..|++.| +|+|||+++.++ +.. .. +...+. + .
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~--~~~---------------~~----l~~~~~--------g--~ 56 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY--YSK---------------PM----LSHYIA--------G--F 56 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC--CCS---------------TT----HHHHHT--------T--S
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc--ccc---------------ch----hHHHHh--------C--C
Confidence 58999999999999999999999 999999975431 000 00 000000 0 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
..+ .++..+..+++++.+++ ++.+++|+.++. ..+.|+ .++. ++.||+||+||
T Consensus 57 ~~~-----------------~~~~~~~~~~~~~~~v~--~~~g~~v~~id~---~~~~V~-~~g~----~~~~d~lViAT 109 (367)
T 1xhc_A 57 IPR-----------------NRLFPYSLDWYRKRGIE--IRLAEEAKLIDR---GRKVVI-TEKG----EVPYDTLVLAT 109 (367)
T ss_dssp SCG-----------------GGGCSSCHHHHHHHTEE--EECSCCEEEEET---TTTEEE-ESSC----EEECSEEEECC
T ss_pred CCH-----------------HHhccCCHHHHHhCCcE--EEECCEEEEEEC---CCCEEE-ECCc----EEECCEEEECC
Confidence 000 11111223344567887 888888998875 345666 4443 79999999999
Q ss_pred CCCCCcccCCCCCCCCCCcceeecccCCCCCCC-----CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc-----
Q 018550 163 GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF-----QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----- 232 (354)
Q Consensus 163 G~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~----- 232 (354)
| +.|+.|+++|.+ ..++.....+.... .+++++|||+|++|+|+|..|++.|.+|+++++.+..
T Consensus 110 G--s~p~~p~i~G~~----~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~ 183 (367)
T 1xhc_A 110 G--ARAREPQIKGKE----YLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDE 183 (367)
T ss_dssp C--EEECCCCSBTGG----GEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCH
T ss_pred C--CCCCCCCCCCcC----CEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeeccCCH
Confidence 9 899999888822 22322221111101 3589999999999999999999999999999987641
Q ss_pred ----cccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCchhhh-------------
Q 018550 233 ----ETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL------------- 294 (354)
Q Consensus 233 ----~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------------- 294 (354)
...+.+++.+ +++.++.|++++.++ |++++|+ +++|.|++|+|++ ||+++++..+..
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-v~~~~g~-i~~D~vi~a~G~~---p~~~ll~~~gl~~~~gi~Vd~~~~t 258 (367)
T 1xhc_A 184 ELSNMIKDMLEETGVKFFLNSELLEANEEG-VLTNSGF-IEGKVKICAIGIV---PNVDLARRSGIHTGRGILIDDNFRT 258 (367)
T ss_dssp HHHHHHHHHHHHTTEEEECSCCEEEECSSE-EEETTEE-EECSCEEEECCEE---ECCHHHHHTTCCBSSSEECCTTSBC
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEeeE-EEECCCE-EEcCEEEECcCCC---cCHHHHHhCCCCCCCCEEECCCccc
Confidence 1122334455 889999999998544 8888887 9999999999999 777766543321
Q ss_pred -hceeeeecccch----------hhHHHHHHHhhhccCCC
Q 018550 295 -LWMTIVLGHCTS----------TFFRQSWHQAFHLLGYH 323 (354)
Q Consensus 295 -~~~i~a~GD~~~----------~~~~~~~~~~~~~~~~~ 323 (354)
..+|||+|||+. ....|+...+.++.+..
T Consensus 259 ~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~ 298 (367)
T 1xhc_A 259 SAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGEP 298 (367)
T ss_dssp SSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 245999999963 23456777788887644
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-30 Score=245.16 Aligned_cols=267 Identities=18% Similarity=0.254 Sum_probs=183.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+|||||+||+++|..|++. +.+|+|||+++.++..... +...
T Consensus 1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~-------------------------l~~~------- 48 (565)
T 3ntd_A 1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCG-------------------------LPYH------- 48 (565)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGG-------------------------HHHH-------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccC-------------------------chHH-------
Confidence 37899999999999999999998 7899999998765311000 0000
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+.+... +....+.++...+.++++++ ++++++|++++... +.+.+.... .+...++.||+||
T Consensus 49 ~~~~~~--------------~~~~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~-~~v~~~~~~-~g~~~~~~~d~lv 110 (565)
T 3ntd_A 49 ISGEIA--------------QRSALVLQTPESFKARFNVE--VRVKHEVVAIDRAA-KLVTVRRLL-DGSEYQESYDTLL 110 (565)
T ss_dssp HTSSSC--------------CGGGGBCCCHHHHHHHHCCE--EETTEEEEEEETTT-TEEEEEETT-TCCEEEEECSEEE
T ss_pred hcCCcC--------------ChHHhhccCHHHHHHhcCcE--EEECCEEEEEECCC-CEEEEEecC-CCCeEEEECCEEE
Confidence 000000 00122334556666778888 88999999998755 444444311 1223578999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~- 231 (354)
+||| +.|+.|+++|.+.. .........+. ....+++++|||+|.+|+|+|..|++.|.+|+++++.+.
T Consensus 111 iAtG--~~p~~p~ipG~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 186 (565)
T 3ntd_A 111 LSPG--AAPIVPPIPGVDNP--LTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV 186 (565)
T ss_dssp ECCC--EEECCCCCTTCCST--TEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred ECCC--CCCCCCCCCCCCCC--CEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence 9999 78999999987642 22222111100 113578999999999999999999999999999999874
Q ss_pred ---------ccccccCCCCC-CeEEecceeEEec--------------------CCc--EEEccCcEEecCEEEEcccCC
Q 018550 232 ---------DETHEKQPGYD-NMWLHSMVERANE--------------------DGT--VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 232 ---------~~~~~~l~~~~-~~~~~~~v~~v~~--------------------~~~--v~~~~g~~~~~D~vi~a~G~~ 279 (354)
....+.+.+.+ +++.++.|+++.. ++. +++.+|+++++|.||+|+|+.
T Consensus 187 l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 266 (565)
T 3ntd_A 187 MTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVR 266 (565)
T ss_dssp CTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEE
T ss_pred chhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCc
Confidence 11122334444 8899999999875 232 667788899999999999999
Q ss_pred CccCcccccCchhhh----------------hceeeeecccch----------------hhHHHHHHHhhhccCCCcc
Q 018550 280 GTSTTTLFLKPMALL----------------LWMTIVLGHCTS----------------TFFRQSWHQAFHLLGYHRR 325 (354)
Q Consensus 280 ~~~p~~~~l~~~~~~----------------~~~i~a~GD~~~----------------~~~~~~~~~~~~~~~~~~~ 325 (354)
|++++++..+.. ..+|||+|||+. ....|+...|.++.+....
T Consensus 267 ---p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~ 341 (565)
T 3ntd_A 267 ---PETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREER 341 (565)
T ss_dssp ---ECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred ---cchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCcc
Confidence 777665443322 134999999972 2356777788888776544
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-30 Score=236.42 Aligned_cols=273 Identities=15% Similarity=0.146 Sum_probs=184.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+|||||++|+++|..|++.|+ +|+|||+++.++..... +.... ..
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~-------------------------l~~~~----l~ 51 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPP-------------------------LSKAY----LK 51 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGG-------------------------GGTGG----GG
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCcc-------------------------CCHHH----HC
Confidence 4789999999999999999999998 89999997643211000 00000 00
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
. .... ..+.....+...+.+++ +.. ++|+.++.. ...+++.++. ++.||+||
T Consensus 52 ~-~~~~-----------------~~~~~~~~~~~~~~~i~--~~~-~~v~~id~~---~~~v~~~~g~----~~~~d~lv 103 (404)
T 3fg2_P 52 S-GGDP-----------------NSLMFRPEKFFQDQAIE--LIS-DRMVSIDRE---GRKLLLASGT----AIEYGHLV 103 (404)
T ss_dssp S-CCCT-----------------TSSBSSCHHHHHHTTEE--EEC-CCEEEEETT---TTEEEESSSC----EEECSEEE
T ss_pred C-CCCH-----------------HHccCCCHHHHHhCCCE--EEE-EEEEEEECC---CCEEEECCCC----EEECCEEE
Confidence 0 0000 11111123344566777 777 889998764 3467777764 89999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccC-----CCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-----RIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--- 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--- 231 (354)
+||| +.|+.|+++|.+.. ..+..... .......+++++|||+|.+|+|+|..+.+.|.+|+++.+.+.
T Consensus 104 lAtG--~~p~~~~i~g~~~~--~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~ 179 (404)
T 3fg2_P 104 LATG--ARNRMLDVPNASLP--DVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA 179 (404)
T ss_dssp ECCC--EEECCCCSTTTTST--TEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred EeeC--CCccCCCCCCCCCC--cEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh
Confidence 9999 78999988886531 12211111 011122578999999999999999999999999999998774
Q ss_pred --------ccccccCCCCC-CeEEecceeEEecC-Cc---EEEccCcEEecCEEEEcccCCCccCcccccCchhhh----
Q 018550 232 --------DETHEKQPGYD-NMWLHSMVERANED-GT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL---- 294 (354)
Q Consensus 232 --------~~~~~~l~~~~-~~~~~~~v~~v~~~-~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~---- 294 (354)
+...+.+++.+ +++.++.|+++..+ +. |++++|+++++|.||+|+|+. |++++++..+..
T Consensus 180 ~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~---p~~~l~~~~gl~~~~G 256 (404)
T 3fg2_P 180 RVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVI---PNVEIAAAAGLPTAAG 256 (404)
T ss_dssp TTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEE---ECCHHHHHTTCCBSSS
T ss_pred hccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCc---cCHHHHHhCCCCCCCC
Confidence 11122233444 88999999999854 32 778899999999999999999 777776543322
Q ss_pred ----------hceeeeecccchh----------------hHHHHHHHhhhccCCCcccccCCCCCccccC
Q 018550 295 ----------LWMTIVLGHCTST----------------FFRQSWHQAFHLLGYHRRLSLSPSLNSRASG 338 (354)
Q Consensus 295 ----------~~~i~a~GD~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (354)
..+|||+|||+.. ...|+...|.++.|....+...|.+++..++
T Consensus 257 i~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~p~~~~~~~~ 326 (404)
T 3fg2_P 257 IIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDAKPYDGYPWFWSDQGD 326 (404)
T ss_dssp EEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCCCCCCCCCEEEEEETT
T ss_pred EEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCCCCCCCCCceEeEECC
Confidence 2459999999762 3456777788888765544444444443333
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=234.53 Aligned_cols=260 Identities=18% Similarity=0.282 Sum_probs=176.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+|||||++|+++|..|++. +.+|+|||+++.++..... .|..
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~-----------------------------~p~~--- 50 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCG-----------------------------IPYV--- 50 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcC-----------------------------Cccc---
Confidence 47999999999999999999998 7899999998754321100 0000
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHH-HHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYL-QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
+.+. .....+..+. ..+.++.+++ ++++++|++++. +.+.+.+.++ ..++.||+|
T Consensus 51 ~~~~----------------~~~~~~~~~~~~~~~~~~gi~--v~~~~~v~~i~~---~~~~v~~~~g---~~~~~~d~l 106 (449)
T 3kd9_A 51 VEGL----------------STPDKLMYYPPEVFIKKRGID--LHLNAEVIEVDT---GYVRVRENGG---EKSYEWDYL 106 (449)
T ss_dssp -------------------------------CTHHHHTTCE--EETTCEEEEECS---SEEEEECSSS---EEEEECSEE
T ss_pred cCCC----------------CCHHHhhhcCHHHHHHhcCcE--EEecCEEEEEec---CCCEEEECCc---eEEEEcCEE
Confidence 0000 0012333333 3334677888 999999999864 4466665443 247899999
Q ss_pred EEeeCCCCCcccCCCCCCCCCCcceeecccCC-------CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
|+||| +.|+.|+++|.+.. ..+...... ....+.+++++|||+|++|+|+|..|++.|.+|+++.+.+.
T Consensus 107 viAtG--~~p~~p~i~G~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 182 (449)
T 3kd9_A 107 VFANG--ASPQVPAIEGVNLK--GVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER 182 (449)
T ss_dssp EECCC--EEECCCSCBTTTST--TEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EECCC--CCCCCCCCCCCCCC--CEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence 99999 88999988887541 122111110 01123678999999999999999999999999999999774
Q ss_pred --c---------cccccCCCCCCeEEecceeEEecCCc--EEEccCcEEecCEEEEcccCCCccCcccccCchhhh----
Q 018550 232 --D---------ETHEKQPGYDNMWLHSMVERANEDGT--VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL---- 294 (354)
Q Consensus 232 --~---------~~~~~l~~~~~~~~~~~v~~v~~~~~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~---- 294 (354)
. ...+.+.+..+++.++.+.++..++. .+..+++++++|.||+|+|++ |++++++..+..
T Consensus 183 ~l~~~~~~~~~~~l~~~l~~~v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~---p~~~l~~~~gl~~~~~ 259 (449)
T 3kd9_A 183 VLRRSFDKEVTDILEEKLKKHVNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIK---PNIELAKQLGVRIGET 259 (449)
T ss_dssp TTTTTSCHHHHHHHHHHHTTTSEEEESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEE---ECCHHHHHTTCCBCTT
T ss_pred cchhhcCHHHHHHHHHHHHhCcEEEeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCc---cCHHHHHhCCccCCCC
Confidence 1 11222333367888999999986543 456678899999999999999 777766543322
Q ss_pred ------------hceeeeecccch----------------hhHHHHHHHhhhccCCCc
Q 018550 295 ------------LWMTIVLGHCTS----------------TFFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 295 ------------~~~i~a~GD~~~----------------~~~~~~~~~~~~~~~~~~ 324 (354)
..+|||+|||+. ....|+...+.++.|...
T Consensus 260 G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~ 317 (449)
T 3kd9_A 260 GAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKEL 317 (449)
T ss_dssp SSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCc
Confidence 134999999973 245667777888876544
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-30 Score=236.55 Aligned_cols=262 Identities=15% Similarity=0.125 Sum_probs=177.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
|+++|+|||||++|+++|..|++.|. +|+|||+++.++..... +.......
T Consensus 3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~-------------------------l~~~~~~~-- 55 (431)
T 1q1r_A 3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPP-------------------------LSKAYLAG-- 55 (431)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGG-------------------------GGTTTTTT--
T ss_pred CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCC-------------------------CcHHHhCC--
Confidence 35899999999999999999999998 79999987543110000 00000000
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
.... ..+.....+.+.+.+++ ++++++|+.++..+ ..+.+.++. ++.||+|
T Consensus 56 ---~~~~-----------------~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~---~~v~~~~g~----~~~~d~l 106 (431)
T 1q1r_A 56 ---KATA-----------------ESLYLRTPDAYAAQNIQ--LLGGTQVTAINRDR---QQVILSDGR----ALDYDRL 106 (431)
T ss_dssp ---CSCS-----------------GGGBSSCHHHHHHTTEE--EECSCCEEEEETTT---TEEEETTSC----EEECSEE
T ss_pred ---CCCh-----------------HHhcccCHHHHHhCCCE--EEeCCEEEEEECCC---CEEEECCCC----EEECCEE
Confidence 0000 11100112334567887 88899999998643 467776654 7999999
Q ss_pred EEeeCCCCCcccCCCCCCCCCCc-c-eeecccCC-----CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 159 VVCNGHFSVPRLAQVPGIDSWPG-K-QMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~~~~~~-~-~~~~~~~~-----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
|+||| +.|+.|+++|.+. .+ . +....... ......+++++|||+|.+|+|+|..|++.|.+|+++.+.+.
T Consensus 107 viAtG--~~p~~~~i~G~~~-~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~ 183 (431)
T 1q1r_A 107 VLATG--GRPRPLPVASGAV-GKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 183 (431)
T ss_dssp EECCC--EEECCCGGGTTHH-HHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred EEcCC--CCccCCCCCCccc-CCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence 99999 7888888887642 11 0 22211110 11123579999999999999999999999999999998764
Q ss_pred c-----------cccccCCCCC-CeEEecceeEEec--C-Cc---EEEccCcEEecCEEEEcccCCCccCcccccCchhh
Q 018550 232 D-----------ETHEKQPGYD-NMWLHSMVERANE--D-GT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMAL 293 (354)
Q Consensus 232 ~-----------~~~~~l~~~~-~~~~~~~v~~v~~--~-~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~ 293 (354)
. ...+.+++.+ +++.++.|+++.. + +. |++++|+++++|.||+|+|++ |++++++..+.
T Consensus 184 ~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~---p~~~l~~~~gl 260 (431)
T 1q1r_A 184 VLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLI---PNCELASAAGL 260 (431)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEE---ECCHHHHHTTC
T ss_pred cccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCC---cCcchhhccCC
Confidence 1 1122233444 8899999999975 3 32 677889999999999999999 77777654332
Q ss_pred h--------------hceeeeecccchh----------------hHHHHHHHhhhccCCCc
Q 018550 294 L--------------LWMTIVLGHCTST----------------FFRQSWHQAFHLLGYHR 324 (354)
Q Consensus 294 ~--------------~~~i~a~GD~~~~----------------~~~~~~~~~~~~~~~~~ 324 (354)
. ..+|||+|||+.. ...|+...|.++.+...
T Consensus 261 ~~~~gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~ 321 (431)
T 1q1r_A 261 QVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKVP 321 (431)
T ss_dssp CBSSSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCCC
Confidence 1 2459999999863 34566777888876543
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-29 Score=231.29 Aligned_cols=264 Identities=18% Similarity=0.234 Sum_probs=176.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++|+|||||++|+++|..|++. |.+|+|||+++.++..... . .... . ....
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~---------------------~-~~~~---~-g~~~- 53 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCG---------------------I-ALYL---G-KEIK- 53 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGG---------------------H-HHHH---T-TCBG-
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCccccc---------------------c-hhhh---c-CCcc-
Confidence 5899999999999999999998 9999999997644211000 0 0000 0 0000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
.... .++...+.+.+.+.+++ +++++++..++..+ +.+.+.... ++...++.||+||+
T Consensus 54 -~~~~-----------------~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~-~~v~v~~~~-~g~~~~~~~d~lvi 111 (452)
T 2cdu_A 54 -NNDP-----------------RGLFYSSPEELSNLGAN--VQMRHQVTNVDPET-KTIKVKDLI-TNEEKTEAYDKLIM 111 (452)
T ss_dssp -GGCG-----------------GGGBSCCHHHHHHTTCE--EEESEEEEEEEGGG-TEEEEEETT-TCCEEEEECSEEEE
T ss_pred -cCCH-----------------HHhhhcCHHHHHHcCCE--EEeCCEEEEEEcCC-CEEEEEecC-CCceEEEECCEEEE
Confidence 0000 11111123334567888 88899999998655 444443311 11124799999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--c-
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--D- 232 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--~- 232 (354)
||| +.|+.|+++|.+.. ..++...+.+. ....+++++|||+|.+|+|+|..|++.|.+|+++++.+. .
T Consensus 112 AtG--s~p~~p~i~g~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~ 187 (452)
T 2cdu_A 112 TTG--SKPTVPPIPGIDSS--RVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK 187 (452)
T ss_dssp CCC--EEECCCCCTTTTST--TEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT
T ss_pred ccC--CCcCCCCCCCCCCC--CEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh
Confidence 999 88999998887531 23332222111 112578999999999999999999999999999998764 1
Q ss_pred --------cccccCCCCC-CeEEecceeEEec-CCcE--EEccCcEEecCEEEEcccCCCccCcccccCchhhh------
Q 018550 233 --------ETHEKQPGYD-NMWLHSMVERANE-DGTV--VFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL------ 294 (354)
Q Consensus 233 --------~~~~~l~~~~-~~~~~~~v~~v~~-~~~v--~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------ 294 (354)
...+.+++.+ +++.++.|+++.. ++.+ +..+|+++++|.||+|+|++ |++++++.. ..
T Consensus 188 ~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~---p~~~ll~~~-l~~~~~G~ 263 (452)
T 2cdu_A 188 YFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFR---PNTELLKGK-VAMLDNGA 263 (452)
T ss_dssp TSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEE---ECCGGGTTT-SCBCTTSC
T ss_pred hhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCC---CCHHHHHHh-hhcCCCCC
Confidence 1122334445 8999999999985 4433 33478899999999999999 777776543 11
Q ss_pred ----------hceeeeecccchh----------------hHHHHHHHhhhccCCC
Q 018550 295 ----------LWMTIVLGHCTST----------------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 295 ----------~~~i~a~GD~~~~----------------~~~~~~~~~~~~~~~~ 323 (354)
..+|||+|||+.. ...|+...+.++.+..
T Consensus 264 i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 318 (452)
T 2cdu_A 264 IITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDK 318 (452)
T ss_dssp BCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred EEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCC
Confidence 1349999999862 3466777788887643
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=225.00 Aligned_cols=261 Identities=16% Similarity=0.225 Sum_probs=180.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+|||||++|+++|..|++.| .+|+++|+++ |..+... .+..
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~--------------------~l~~----------- 50 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKP--------------------MLST----------- 50 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGG--------------------GGGG-----------
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcc--------------------cccH-----------
Confidence 479999999999999999999998 5799999864 3222210 0000
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHH-HHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLR-YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
.+... ....++.. ++.+++++.+++ ++.++++..++..+ +++.+.+ .++.||+|
T Consensus 51 --~~~~~-------------~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~---~~v~~~~-----~~~~~d~l 105 (384)
T 2v3a_A 51 --GFSKN-------------KDADGLAMAEPGAMAEQLNAR--ILTHTRVTGIDPGH---QRIWIGE-----EEVRYRDL 105 (384)
T ss_dssp --TTTTT-------------CCHHHHEEECHHHHHHHTTCE--EECSCCCCEEEGGG---TEEEETT-----EEEECSEE
T ss_pred --HHhCC-------------CCHHHhhccCHHHHHHhCCcE--EEeCCEEEEEECCC---CEEEECC-----cEEECCEE
Confidence 00000 01133322 455666778888 88888888887533 4566543 27999999
Q ss_pred EEeeCCCCCcccCCCCCCCCCCcceeecccCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--
Q 018550 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-- 231 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-- 231 (354)
|+||| +.|+.|+++|... ...++.....+. ....+++++|||+|.+|+|+|..|++.|.+|+++++.+.
T Consensus 106 viAtG--~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 181 (384)
T 2v3a_A 106 VLAWG--AEPIRVPVEGDAQ--DALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVM 181 (384)
T ss_dssp EECCC--EEECCCCCBSTTT--TCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred EEeCC--CCcCCCCCCCcCc--CCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchh
Confidence 99999 8899988888653 123333222110 112479999999999999999999999999999998764
Q ss_pred ---------ccccccCCCCC-CeEEecceeEEecCC---cEEEccCcEEecCEEEEcccCCCccCcccccCchhh-----
Q 018550 232 ---------DETHEKQPGYD-NMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMAL----- 293 (354)
Q Consensus 232 ---------~~~~~~l~~~~-~~~~~~~v~~v~~~~---~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~----- 293 (354)
+...+.+++.+ +++.++.|+++..++ .+++++|+++++|.||+|+|+. |++++++..+.
T Consensus 182 ~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~---p~~~l~~~~g~~~~~g 258 (384)
T 2v3a_A 182 PGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLR---PRTELAFAAGLAVNRG 258 (384)
T ss_dssp TTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE---ECCHHHHHTTCCBSSS
T ss_pred hcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCC---cCHHHHHHCCCCCCCC
Confidence 11122334445 899999999997543 2677888899999999999999 77766543322
Q ss_pred ---------hhceeeeecccch--h--------hHHHHHHHhhhccCCCcccc
Q 018550 294 ---------LLWMTIVLGHCTS--T--------FFRQSWHQAFHLLGYHRRLS 327 (354)
Q Consensus 294 ---------~~~~i~a~GD~~~--~--------~~~~~~~~~~~~~~~~~~~~ 327 (354)
...+|||+|||+. . ...|+...+.++.|....+.
T Consensus 259 i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~~~~~~ 311 (384)
T 2v3a_A 259 IVVDRSLRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNPSQVA 311 (384)
T ss_dssp EEECTTCBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred EEECCCCCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCCCccCC
Confidence 1245999999984 1 24567777888877554443
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=227.79 Aligned_cols=260 Identities=21% Similarity=0.206 Sum_probs=173.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++|+|||||++|+++|..|++. |.+|+|||+++.++.. .. ..... ...
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~~---------------------~~~~~---~~~----- 50 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-SA---------------------GMQLY---LEG----- 50 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-GG---------------------GHHHH---HTT-----
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc-cc---------------------cchhh---hcC-----
Confidence 5899999999999999999998 8999999997654310 00 00000 000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVV 159 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vI 159 (354)
.+. ...++..+..+.+.+.+++ ++.++++..++.++ +. +.+.+ .++...++.||+||
T Consensus 51 -~~~----------------~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~-~~--v~~~~~~~g~~~~~~~d~lv 108 (447)
T 1nhp_A 51 -KVK----------------DVNSVRYMTGEKMESRGVN--VFSNTEITAIQPKE-HQ--VTVKDLVSGEERVENYDKLI 108 (447)
T ss_dssp -SSC----------------CGGGSBSCCHHHHHHTTCE--EEETEEEEEEETTT-TE--EEEEETTTCCEEEEECSEEE
T ss_pred -ccC----------------CHHHhhcCCHHHHHHCCCE--EEECCEEEEEeCCC-CE--EEEEecCCCceEEEeCCEEE
Confidence 000 0011111223344566887 88899999997654 43 44433 11222358999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcceeecccCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA- 231 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~- 231 (354)
+||| +.|+.|+++|.+. ..+++...+.+. ....+++++|||+|++|+|+|..|++.|.+|+++++.+.
T Consensus 109 iAtG--~~p~~p~i~G~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 184 (447)
T 1nhp_A 109 ISPG--AVPFELDIPGKDL--DNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 184 (447)
T ss_dssp ECCC--EEECCCCSTTTTS--BSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred EcCC--CCcCCCCCCCCCC--CCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence 9999 8899999988753 123332222110 112579999999999999999999999999999998764
Q ss_pred -c---------cccccCCCCC-CeEEecceeEEecCCcE--EEccCcEEecCEEEEcccCCCccCcccccCchhhh----
Q 018550 232 -D---------ETHEKQPGYD-NMWLHSMVERANEDGTV--VFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL---- 294 (354)
Q Consensus 232 -~---------~~~~~l~~~~-~~~~~~~v~~v~~~~~v--~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~---- 294 (354)
. ...+.+++.+ +++.++.|+++..++.+ +..+++++++|.||+|+|++ |++++++.. ..
T Consensus 185 l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~d~vi~a~G~~---p~~~~~~~~-~~~~~~ 260 (447)
T 1nhp_A 185 LGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAVGVR---PNTAWLKGT-LELHPN 260 (447)
T ss_dssp TTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECSCEE---ESCGGGTTT-SCBCTT
T ss_pred ccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEECCCEEECCEEEECcCCC---CChHHHHhh-hhhcCC
Confidence 1 1222334555 88999999999866532 33466789999999999999 666665433 11
Q ss_pred ------------hceeeeecccch----------------hhHHHHHHHhhhccCC
Q 018550 295 ------------LWMTIVLGHCTS----------------TFFRQSWHQAFHLLGY 322 (354)
Q Consensus 295 ------------~~~i~a~GD~~~----------------~~~~~~~~~~~~~~~~ 322 (354)
..+|||+|||+. ....|+...+.++.+.
T Consensus 261 G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~ 316 (447)
T 1nhp_A 261 GLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEP 316 (447)
T ss_dssp SCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSC
T ss_pred CcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCC
Confidence 235999999985 2356677778888664
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=226.03 Aligned_cols=211 Identities=18% Similarity=0.202 Sum_probs=144.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC--------------cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH--------------TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS 68 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~--------------~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (354)
+||+|||+||+|+++|..|.+.+. ....+|+.+.++ |+.. ...|...+..+.+.+.
T Consensus 40 ~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh~g--------~~~p~~~~q~~fl~Dl 109 (501)
T 4b63_A 40 HDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WHSG--------MLVPGSKMQISFIKDL 109 (501)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SSGG--------GCCTTCBCSSCGGGSS
T ss_pred CcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cCCC--------CCCCCccccccchhhh
Confidence 689999999999999999987643 566777766544 4331 1111111111222221
Q ss_pred chhccccccccccCCCCCccCC-CCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-------CcEE
Q 018550 69 LRVNLPRELMGFQAYPFVARNY-EGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-------NKWK 140 (354)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-------~~~~ 140 (354)
.....|...+.|..|-....++ .+..+...||++.++.+|+++++++++.. ++++++|+++.+.+. +.|+
T Consensus 110 vtl~~P~s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~--vrf~~~V~~v~~~~~~~~~~~~~~~~ 187 (501)
T 4b63_A 110 ATLRDPRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDV--VAYGEEVVEVIPGKSDPSSSVVDFFT 187 (501)
T ss_dssp STTTCTTCTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGG--EEESEEEEEEEEECSSTTSSCBCEEE
T ss_pred ccccCCCCccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCc--eEcceEEEeeccccccccccccceEE
Confidence 1122222222221111000000 01124567899999999999999998766 999999999998653 2499
Q ss_pred EEEeecC-CceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCC------CCCCCCCeEEEEccCCCHHHHH
Q 018550 141 VKSRKKD-DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI------PNPFQDQVVILIGHYASGLDIK 213 (354)
Q Consensus 141 v~~~~g~-~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~g~e~a 213 (354)
|++.++. +...++.++.||+||| ..|.+|.. ..+.+.++|+..|.. ...+.+|+|+|||+|.||+|++
T Consensus 188 V~~~~~~~g~~~~~~ar~vVlatG--~~P~iP~~---~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~ 262 (501)
T 4b63_A 188 VRSRNVETGEISARRTRKVVIAIG--GTAKMPSG---LPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIF 262 (501)
T ss_dssp EEEEETTTCCEEEEEEEEEEECCC--CEECCCTT---SCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHH
T ss_pred EEEecCCCceEEEEEeCEEEECcC--CCCCCCCC---CCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHH
Confidence 9998864 3457899999999999 66666654 445668899887753 4567899999999999999999
Q ss_pred HHHhcc--CCEEEEEEecC
Q 018550 214 RDLAGF--AKEVHIASRSV 230 (354)
Q Consensus 214 ~~l~~~--g~~v~~~~r~~ 230 (354)
..|++. +.+|+++.|++
T Consensus 263 ~~L~~~~~~~~v~~~~R~~ 281 (501)
T 4b63_A 263 HDLQKRYPNSRTTLIMRDS 281 (501)
T ss_dssp HHHHHHSTTCEEEEECSSS
T ss_pred HHHHhcCCCceEEEEeCCC
Confidence 999875 68999999986
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-28 Score=228.95 Aligned_cols=263 Identities=19% Similarity=0.268 Sum_probs=174.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+|||||++|+++|..|++. |.+|+|||+++.++..... . ... ..
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~---------------------~-~~~---~~----- 85 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCG---------------------L-PYV---IS----- 85 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGG---------------------H-HHH---HT-----
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCC---------------------c-chh---hc-----
Confidence 36899999999999999999997 8999999997654311100 0 000 00
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHH-HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEE-eecCCceEEEEeCE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRY-LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS-RKKDDVVEEETFDA 157 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~-~~g~~~~~~~~~d~ 157 (354)
.. . +...++..+ ...+.+.++++ ++++++|..++.++ +.+.+.. .++ ...++.||+
T Consensus 86 --~~-~--------------~~~~~l~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~-~~v~v~~~~~g--~~~~~~~d~ 143 (480)
T 3cgb_A 86 --GA-I--------------ASTEKLIARNVKTFRDKYGID--AKVRHEVTKVDTEK-KIVYAEHTKTK--DVFEFSYDR 143 (480)
T ss_dssp --TS-S--------------SCGGGGBSSCHHHHHHTTCCE--EESSEEEEEEETTT-TEEEEEETTTC--CEEEEECSE
T ss_pred --CC-c--------------CCHHHhhhcCHHHHHhhcCCE--EEeCCEEEEEECCC-CEEEEEEcCCC--ceEEEEcCE
Confidence 00 0 000111111 22233445887 88899999998654 4444443 112 224789999
Q ss_pred EEEeeCCCCCcccCCCCCCCCCCcceeecccCCCC-------CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 158 vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
||+||| +.|+.|+++|.+.. .+++.....+. ....+++++|||+|++|+|+|..|++.|.+|+++.+.+
T Consensus 144 lviAtG--~~p~~p~i~G~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 219 (480)
T 3cgb_A 144 LLIATG--VRPVMPEWEGRDLQ--GVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERND 219 (480)
T ss_dssp EEECCC--EEECCCCCBTTTSB--TEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred EEECCC--CcccCCCCCCccCC--CEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence 999999 88999988887531 22322111110 01257999999999999999999999999999999876
Q ss_pred C----------ccccccCCCCC-CeEEecceeEEecCCcE--EEccCcEEecCEEEEcccCCCccCcccccCchhhh---
Q 018550 231 A----------DETHEKQPGYD-NMWLHSMVERANEDGTV--VFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL--- 294 (354)
Q Consensus 231 ~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v--~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~--- 294 (354)
. +...+.+++.+ +++.++.|+++..++.+ +..++.++++|.||+|+|+. |++++++..+..
T Consensus 220 ~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~G~~---p~~~~l~~~g~~~~~ 296 (480)
T 3cgb_A 220 HIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVK---PNTDFLEGTNIRTNH 296 (480)
T ss_dssp GTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETTEEEECSEEEECSCEE---ESCGGGTTSCCCBCT
T ss_pred chhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECcCCC---cChHHHHhCCcccCC
Confidence 3 11222333444 88889999999866543 23345689999999999999 777776544322
Q ss_pred -------------hceeeeecccch----------------hhHHHHHHHhhhccCCC
Q 018550 295 -------------LWMTIVLGHCTS----------------TFFRQSWHQAFHLLGYH 323 (354)
Q Consensus 295 -------------~~~i~a~GD~~~----------------~~~~~~~~~~~~~~~~~ 323 (354)
..+|||+|||+. ....|+...+.++.+..
T Consensus 297 ~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 354 (480)
T 3cgb_A 297 KGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKR 354 (480)
T ss_dssp TSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCC
Confidence 235999999983 23566777788887643
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=235.73 Aligned_cols=284 Identities=15% Similarity=0.225 Sum_probs=173.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC-C-------CccceeecCCCCCCCCCCCCCCCCcccccccccchhcc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-E-------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL 73 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~-~-------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (354)
.+||+||||||||+++|..|++.|.+|+|||+. + .+||+|.+. +|.|.+.+...........+.
T Consensus 107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~--------g~iP~~~l~~~~~~~~~~~~~ 178 (598)
T 2x8g_A 107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNV--------GCIPKKLMHQAGLLSHALEDA 178 (598)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEecc--------CCCchHHHHHHHHHHHHHhhH
Confidence 479999999999999999999999999999973 2 378887663 555543332221111111111
Q ss_pred ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH-----------HhCCcceEEeceEEEEEEEeCCCcEEEE
Q 018550 74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR-----------EFGVDQVVRLHTEVLNARLVESNKWKVK 142 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~v~~~~~v~~i~~~~~~~~~v~ 142 (354)
. .+.+... ......++..+.+++...++ ..+++ +.. .....++ .+.+.
T Consensus 179 ~-------~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~-~~~~~~~-----~~~v~ 237 (598)
T 2x8g_A 179 E-------HFGWSLD------RSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVT--YLN-AKGRLIS-----PHEVQ 237 (598)
T ss_dssp H-------HTTCCCC------GGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEC-SEEEEEE-----TTEEE
T ss_pred H-------hCCcccc------CCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEE-EEEEEcC-----CCEEE
Confidence 1 0111000 00011233566666554433 33454 333 3333332 23344
Q ss_pred EeecCCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCE
Q 018550 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (354)
Q Consensus 143 ~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~ 222 (354)
....++...++.||+||+||| +.|+.|+++|...+ .+++...... ...+++++|||+|++|+|+|..|++.|.+
T Consensus 238 v~~~~g~~~~~~~d~lviAtG--s~p~~p~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~ 311 (598)
T 2x8g_A 238 ITDKNQKVSTITGNKIILATG--ERPKYPEIPGAVEY---GITSDDLFSL-PYFPGKTLVIGASYVALECAGFLASLGGD 311 (598)
T ss_dssp EECTTCCEEEEEEEEEEECCC--EEECCCSSTTHHHH---CEEHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCeEEEEeCEEEEeCC--CCCCCCCCCCcccc---eEcHHHHhhC-ccCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence 433222234789999999999 88999999886542 2233222221 23567899999999999999999999999
Q ss_pred EEEEEecCC----c-----cccccCCCCC-CeEEecceeEEec-------C---CcEE----EccCcEEe--cCEEEEcc
Q 018550 223 VHIASRSVA----D-----ETHEKQPGYD-NMWLHSMVERANE-------D---GTVV----FRNGRVVS--ADVIMHCT 276 (354)
Q Consensus 223 v~~~~r~~~----~-----~~~~~l~~~~-~~~~~~~v~~v~~-------~---~~v~----~~~g~~~~--~D~vi~a~ 276 (354)
|++++++.. + ...+.+++.+ +++.++.++++.. + +.+. ..+|++++ +|.||+|+
T Consensus 312 Vtlv~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~ 391 (598)
T 2x8g_A 312 VTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAV 391 (598)
T ss_dssp EEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECS
T ss_pred EEEEECCcCcCcCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEe
Confidence 999998632 1 1122333444 7888877776632 1 3332 35676655 99999999
Q ss_pred cCCCccCccccc--Cchhh----------------hhceeeeecccchh-------hHHHHHHHhhhccCCC
Q 018550 277 GLTGTSTTTLFL--KPMAL----------------LLWMTIVLGHCTST-------FFRQSWHQAFHLLGYH 323 (354)
Q Consensus 277 G~~~~~p~~~~l--~~~~~----------------~~~~i~a~GD~~~~-------~~~~~~~~~~~~~~~~ 323 (354)
|++ ||++++ ...+. ...+|||+|||+.. ...|+...|.++.+..
T Consensus 392 G~~---p~~~~l~~~~~gl~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 460 (598)
T 2x8g_A 392 GRE---PQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGA 460 (598)
T ss_dssp CEE---ECGGGTBCGGGCCCBCTTSCBCCCTTSBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCc---cccCccCchhcCceECCCCcEEeCCCCcCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcCC
Confidence 999 777653 22211 12359999999532 3456666677776543
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-28 Score=234.80 Aligned_cols=228 Identities=23% Similarity=0.385 Sum_probs=169.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||+||+++|..|++.|++|+|||+++.+||.+.....
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~----------------------------------- 417 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQ----------------------------------- 417 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTT-----------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeecccc-----------------------------------
Confidence 478999999999999999999999999999998888888765210
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE-EeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE-TFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~-~~d~vIl 160 (354)
++. .....++.+++.+.+++.+++ +++++.|.. . .+ .||+||+
T Consensus 418 -~~~-------------~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~----------------~----~~~~~d~lvi 461 (671)
T 1ps9_A 418 -IPG-------------KEEFYETLRYYRRMIEVTGVT--LKLNHTVTA----------------D----QLQAFDETIL 461 (671)
T ss_dssp -STT-------------CTTHHHHHHHHHHHHHHHTCE--EEESCCCCS----------------S----SSCCSSEEEE
T ss_pred -CCC-------------HHHHHHHHHHHHHHHHHcCCE--EEeCcEecH----------------H----HhhcCCEEEE
Confidence 000 001145566777777888888 777764421 0 23 8999999
Q ss_pred eeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCC-------------------
Q 018550 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK------------------- 221 (354)
Q Consensus 161 AtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~------------------- 221 (354)
||| +.|+.|.++|.+. ..+++..+........+++|+|||+|.+|+|+|..|++.|.
T Consensus 462 AtG--~~p~~~~i~G~~~--~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~ 537 (671)
T 1ps9_A 462 ASG--IVPRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSL 537 (671)
T ss_dssp CCC--EEECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTC
T ss_pred ccC--CCcCCCCCCCCCC--CcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccc
Confidence 999 7899999988765 23455444444444568999999999999999999998763
Q ss_pred ------------------EEEEEEecCC--cc---------ccccCCCCC-CeEEecceeEEecCCcEEE-ccC--cEEe
Q 018550 222 ------------------EVHIASRSVA--DE---------THEKQPGYD-NMWLHSMVERANEDGTVVF-RNG--RVVS 268 (354)
Q Consensus 222 ------------------~v~~~~r~~~--~~---------~~~~l~~~~-~~~~~~~v~~v~~~~~v~~-~~g--~~~~ 268 (354)
+|+++.+.+. .. ..+.+++.+ +++.++.++++..++ +++ .+| ++++
T Consensus 538 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-v~~~~~G~~~~i~ 616 (671)
T 1ps9_A 538 QQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDG-LHVVINGETQVLA 616 (671)
T ss_dssp CSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTE-EEEEETTEEEEEC
T ss_pred cccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCe-EEEecCCeEEEEe
Confidence 4566665432 00 122333444 888899999998766 666 677 6799
Q ss_pred cCEEEEcccCCCccCcccccCchhhhhceeeeecccchhh
Q 018550 269 ADVIMHCTGLTGTSTTTLFLKPMALLLWMTIVLGHCTSTF 308 (354)
Q Consensus 269 ~D~vi~a~G~~~~~p~~~~l~~~~~~~~~i~a~GD~~~~~ 308 (354)
+|.||+|+|++ ||++++..+.....+||++|||....
T Consensus 617 ~D~Vi~a~G~~---p~~~l~~~l~~~g~~v~aiGD~~~~~ 653 (671)
T 1ps9_A 617 VDNVVICAGQE---PNRALAQPLIDSGKTVHLIGGCDVAM 653 (671)
T ss_dssp CSEEEECCCEE---ECCTTHHHHHTTTCCEEECGGGTCCS
T ss_pred CCEEEECCCcc---ccHHHHHHHHhcCCCEEEECCcCccC
Confidence 99999999999 88888776655567899999998743
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-28 Score=235.94 Aligned_cols=245 Identities=18% Similarity=0.186 Sum_probs=179.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||++|+++|..|+++|++|+|||+++.+||.+.....
T Consensus 391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~----------------------------------- 435 (690)
T 3k30_A 391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESA----------------------------------- 435 (690)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHT-----------------------------------
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccC-----------------------------------
Confidence 478999999999999999999999999999999889988765210
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
++ .+.....+.+++...+.++ +++ ++++++++ ..+. .++.+|+||+
T Consensus 436 -~p-------------~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~-------------~~~~----~~~~~d~lvl 482 (690)
T 3k30_A 436 -LP-------------GLSAWGRVKEYREAVLAELPNVE--IYRESPMT-------------GDDI----VEFGFEHVIT 482 (690)
T ss_dssp -ST-------------TCGGGGHHHHHHHHHHHTCTTEE--EESSCCCC-------------HHHH----HHTTCCEEEE
T ss_pred -CC-------------chhHHHHHHHHHHHHHHHcCCCE--EEECCeec-------------HHHH----hhcCCCEEEE
Confidence 00 0011267788888888776 676 66665431 1111 2578999999
Q ss_pred eeCCCCC--------cccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEc--cCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 161 CNGHFSV--------PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG--HYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 161 AtG~~s~--------~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG--~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
||| +. +..|.++|.+. ..+++..++.......+++++||| +|.+|+|+|..|++.|.+|+++++.+
T Consensus 483 AtG--~~~~~~~~~~~~~~~i~G~~~--~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~ 558 (690)
T 3k30_A 483 ATG--ATWRTDGVARFHTTALPIAEG--MQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGA 558 (690)
T ss_dssp CCC--EEECSSCCSSSCSSCCCBCTT--SEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cCC--CccccccccccCCCCCCCCCC--CcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccc
Confidence 999 55 44677777654 244554444444555678999999 99999999999999999999999876
Q ss_pred C--c---------cccccCCCCC-CeEEecceeEEecCCcEEEc-----cCcEEecCEEEEcccCCCccCcccccCchhh
Q 018550 231 A--D---------ETHEKQPGYD-NMWLHSMVERANEDGTVVFR-----NGRVVSADVIMHCTGLTGTSTTTLFLKPMAL 293 (354)
Q Consensus 231 ~--~---------~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~-----~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~ 293 (354)
. . ...+.+++.+ +++.++.|+++..++ +.+. +++++++|.||+|+|++ |+++++.....
T Consensus 559 ~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~v~~~~~~~~~~i~aD~VV~A~G~~---p~~~l~~~l~~ 634 (690)
T 3k30_A 559 QVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG-VTVRDTYASIERELECDAVVMVTARL---PREELYLDLVA 634 (690)
T ss_dssp STTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTE-EEEEETTTCCEEEEECSEEEEESCEE---ECCHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCe-EEEEEccCCeEEEEECCEEEECCCCC---CChHHHHHHhh
Confidence 4 1 1122334445 899999999998776 3332 34689999999999999 88888766544
Q ss_pred h-----hceeeeecccchh-----hHHHHHHHhhhccCC
Q 018550 294 L-----LWMTIVLGHCTST-----FFRQSWHQAFHLLGY 322 (354)
Q Consensus 294 ~-----~~~i~a~GD~~~~-----~~~~~~~~~~~~~~~ 322 (354)
. ..+||++|||... ...|+...|.++.+.
T Consensus 635 ~~~~t~~~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~~ 673 (690)
T 3k30_A 635 RRDAGEIASVRGIGDAWAPGTIAAAVWSGRRAAEEFDAV 673 (690)
T ss_dssp HHHHTSCSEEEECGGGTSCBCHHHHHHHHHHHHHHTTCC
T ss_pred hhcccCCCCEEEEeCCCchhhHHHHHHHHHHHHHHHHhh
Confidence 3 3689999999974 345666667776554
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-27 Score=229.91 Aligned_cols=249 Identities=14% Similarity=0.137 Sum_probs=170.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||+||+++|..|++.|++|+|||+.+.+||.+..... .|
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~--------~p------------------------- 435 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAA--------LP------------------------- 435 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTT--------ST-------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeeccc--------CC-------------------------
Confidence 478999999999999999999999999999999889998876311 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
+ ++....+.+++...++.+ +++ +..+ ..++..++ ..+.|
T Consensus 436 g----------------~~~~~~~~~~~~~~i~~~~~~~~~~v~--i~~~-------------~~v~~~~~----~~~~~ 480 (729)
T 1o94_A 436 G----------------LGEWSYHRDYRETQITKLLKKNKESQL--ALGQ-------------KPMTADDV----LQYGA 480 (729)
T ss_dssp T----------------CGGGHHHHHHHHHHHHHHHHHSTTCEE--ECSC-------------CCCCHHHH----HTSCC
T ss_pred C----------------hHHHHHHHHHHHHHHHHhhcccCCceE--EEeC-------------eEEehhhc----cccCC
Confidence 0 001144555555555443 121 2111 12223332 25789
Q ss_pred CEEEEeeCCCCC------cccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEc--cCCCHHHHHHHHhccCCEEEEEE
Q 018550 156 DAVVVCNGHFSV------PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG--HYASGLDIKRDLAGFAKEVHIAS 227 (354)
Q Consensus 156 d~vIlAtG~~s~------~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG--~G~~g~e~a~~l~~~g~~v~~~~ 227 (354)
|+||+|||+... |+.|+++|.+.+...+++..++.......+++|+||| +|.+|+|+|..|++.|.+|++++
T Consensus 481 d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~ 560 (729)
T 1o94_A 481 DKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVS 560 (729)
T ss_dssp SEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEe
Confidence 999999994211 5677888876443345554444433444678999999 99999999999999999999999
Q ss_pred ecCC----------ccccccCCCCC-CeEEecceeEEecCCcEEE----ccC-cE------------------EecCEEE
Q 018550 228 RSVA----------DETHEKQPGYD-NMWLHSMVERANEDGTVVF----RNG-RV------------------VSADVIM 273 (354)
Q Consensus 228 r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~----~~g-~~------------------~~~D~vi 273 (354)
+.+. ....+.+++.+ +++.++.++++..++ +++ .++ ++ +++|.||
T Consensus 561 ~~~l~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv 639 (729)
T 1o94_A 561 GVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR-MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLV 639 (729)
T ss_dssp SSCTTHHHHHTTCHHHHHHHHHHTTCEEECSEEEEEEETTE-EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEE
T ss_pred cccccccccccccHHHHHHHHHhCCCEEEcCcEEEEEECCe-EEEEEecCCceEEecccccccccccCCcceeeeCCEEE
Confidence 8762 11223333444 889999999998765 433 233 32 8999999
Q ss_pred EcccCCCccCcccccCchhh--------hhceeeeecccchh-----hHHHHHHHhhhccCC
Q 018550 274 HCTGLTGTSTTTLFLKPMAL--------LLWMTIVLGHCTST-----FFRQSWHQAFHLLGY 322 (354)
Q Consensus 274 ~a~G~~~~~p~~~~l~~~~~--------~~~~i~a~GD~~~~-----~~~~~~~~~~~~~~~ 322 (354)
+|+|++ |+++++.+... ...+|||+|||... ...|+...|.++.++
T Consensus 640 ~a~G~~---p~~~l~~~l~~~vd~~~~t~~~~VyAiGD~~~~~~~~~A~~~G~~aA~~i~~~ 698 (729)
T 1o94_A 640 LVTGRH---SECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEA 698 (729)
T ss_dssp EESCEE---ECCHHHHHHHHTGGGTGGGTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSS
T ss_pred ECCCCC---CChHHHHHHhhhcccccccCCCCeEEEeCccchhhHHHHHHHHHHHHHHhhhh
Confidence 999999 88777654332 12579999999873 345566667776443
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-29 Score=230.16 Aligned_cols=289 Identities=15% Similarity=0.130 Sum_probs=173.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
.++|+|||||+||+++|..|++. +.+|+|||+++.++-.. +.+.+.++...... .. ....
T Consensus 11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r------------~~lsk~l~~~~~~~-~~-----~~~~ 72 (493)
T 1m6i_A 11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR------------PPLSKELWFSDDPN-VT-----KTLR 72 (493)
T ss_dssp EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCS------------GGGGTGGGCC--CT-HH-----HHCE
T ss_pred cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCC------------CCCCHHhhcCCccc-hh-----hccc
Confidence 36899999999999999999887 78999999986543110 11111111110000 00 0000
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+.+++........ .....|.....+.+ ..+.+++ ++.+++|++++... ++|.+.++. ++.||+||
T Consensus 73 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~-----~~~~gv~--~~~g~~v~~id~~~---~~V~~~~g~----~i~yd~lv 137 (493)
T 1m6i_A 73 FKQWNGKERSIYF-QPPSFYVSAQDLPH-----IENGGVA--VLTGKKVVQLDVRD---NMVKLNDGS----QITYEKCL 137 (493)
T ss_dssp EECTTSCEEESBS-SCGGGSBCTTTTTT-----STTCEEE--EEETCCEEEEEGGG---TEEEETTSC----EEEEEEEE
T ss_pred ccccccccccccc-cchHhhcchhhhhh-----hhcCCeE--EEcCCEEEEEECCC---CEEEECCCC----EEECCEEE
Confidence 1111100000000 00000000011100 1234555 88888999998643 567777664 79999999
Q ss_pred EeeCCCCCcccCCCCCCCC--CCcceeecccCCC-----CCCCCCCeEEEEccCCCHHHHHHHHhc----cCCEEEEEEe
Q 018550 160 VCNGHFSVPRLAQVPGIDS--WPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAG----FAKEVHIASR 228 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~--~~~~~~~~~~~~~-----~~~~~~~~v~ViG~G~~g~e~a~~l~~----~g~~v~~~~r 228 (354)
+||| +.|+.|++++... +...........+ .....+++++|||+|.+|+|+|..|++ .|.+|+++.+
T Consensus 138 iATG--s~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~ 215 (493)
T 1m6i_A 138 IATG--GTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFP 215 (493)
T ss_dssp ECCC--EEECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred ECCC--CCCCCCCCcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEec
Confidence 9999 7887766544211 0011121111100 001247999999999999999999977 4778999987
Q ss_pred cCC-----------ccccccCCCCC-CeEEecceeEEecC-Cc--EEEccCcEEecCEEEEcccCCCccCcccccCchhh
Q 018550 229 SVA-----------DETHEKQPGYD-NMWLHSMVERANED-GT--VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMAL 293 (354)
Q Consensus 229 ~~~-----------~~~~~~l~~~~-~~~~~~~v~~v~~~-~~--v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~ 293 (354)
.+. +...+.+++.+ +++.++.|+++..+ +. |++.+|+++++|.||+|+|+. ||+++++..+.
T Consensus 216 ~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~---pn~~l~~~~gl 292 (493)
T 1m6i_A 216 EKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLE---PNVELAKTGGL 292 (493)
T ss_dssp SSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEE---ECCTTHHHHTC
T ss_pred CcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCC---ccHHHHHHcCC
Confidence 642 11222334455 88999999999743 32 677889999999999999999 77777654332
Q ss_pred h----------------hceeeeecccch---------------hhHHHHHHHhhhccCCCccccc
Q 018550 294 L----------------LWMTIVLGHCTS---------------TFFRQSWHQAFHLLGYHRRLSL 328 (354)
Q Consensus 294 ~----------------~~~i~a~GD~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 328 (354)
. ..+|||+|||+. ....|+...|.++.+....+..
T Consensus 293 ~~~~~~ggi~Vd~~l~t~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~ 358 (493)
T 1m6i_A 293 EIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWH 358 (493)
T ss_dssp CBCTTTCSEECCTTCEEETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCCCCCC
T ss_pred ccccCCCcEEECCCcccCCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCCCCcCC
Confidence 1 135999999985 3456777778888776544433
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=219.04 Aligned_cols=232 Identities=20% Similarity=0.236 Sum_probs=158.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|++.|++|+|||+.+.+||.+.+. ++
T Consensus 122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip 166 (456)
T 2vdc_G 122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG-----------------------------------IP 166 (456)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT-----------------------------------SC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec-----------------------------------CC
Confidence 4789999999999999999999999999999998899887651 11
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.. . .++.++..+.+.+.+++ +++++.|. . .+++.+. .+.||+||+|
T Consensus 167 ~~~~--~--------------~~~~~~~~~~l~~~gv~--~~~~~~v~-------~--~v~~~~~-----~~~~d~vvlA 214 (456)
T 2vdc_G 167 GFKL--E--------------KSVVERRVKLLADAGVI--YHPNFEVG-------R--DASLPEL-----RRKHVAVLVA 214 (456)
T ss_dssp TTTS--C--------------HHHHHHHHHHHHHTTCE--EETTCCBT-------T--TBCHHHH-----HSSCSEEEEC
T ss_pred CccC--C--------------HHHHHHHHHHHHHCCcE--EEeCCEec-------c--EEEhhHh-----HhhCCEEEEe
Confidence 1111 0 56677777888888988 88877652 1 1222222 3579999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeeccc---------CCC--------CCCCCCCeEEEEccCCCHHHHHHHHhccCC-EE
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHN---------YRI--------PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EV 223 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~---------~~~--------~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v 223 (354)
||++ .++.+.++|.+. . .+++... +.. .....+++|+|||+|.+|+|+|..+.+.|. +|
T Consensus 215 tG~~-~~~~~~ipG~~~-~-gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~V 291 (456)
T 2vdc_G 215 TGVY-KARDIKAPGSGL-G-NIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSV 291 (456)
T ss_dssp CCCC-EECCTTCSCCTT-T-TEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEE
T ss_pred cCCC-CCCCCCCCCCcC-C-CcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEE
Confidence 9942 467778888653 1 1222110 101 122468999999999999999999999986 69
Q ss_pred EEEEecCCc------cccccCCCCC-CeEEecceeEEecCCc---EEEc------------------cC--cEEecCEEE
Q 018550 224 HIASRSVAD------ETHEKQPGYD-NMWLHSMVERANEDGT---VVFR------------------NG--RVVSADVIM 273 (354)
Q Consensus 224 ~~~~r~~~~------~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~~------------------~g--~~~~~D~vi 273 (354)
++++|++.. ..++.+.+.+ ++++++.++++..++. |++. +| .++++|+||
T Consensus 292 tiv~r~~~~~~p~~~~e~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi 371 (456)
T 2vdc_G 292 KCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVI 371 (456)
T ss_dssp EEECSSCSTTCSSCHHHHHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEE
T ss_pred EEEEeCCccCCCCCHHHHHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEE
Confidence 999997641 1122233334 7777877777764432 2221 23 468999999
Q ss_pred EcccCCCccCccc--ccCchhh-----------------hhceeeeecccch
Q 018550 274 HCTGLTGTSTTTL--FLKPMAL-----------------LLWMTIVLGHCTS 306 (354)
Q Consensus 274 ~a~G~~~~~p~~~--~l~~~~~-----------------~~~~i~a~GD~~~ 306 (354)
+|+|+. |+.. ++...+. ...+|||+|||..
T Consensus 372 ~A~G~~---p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~ 420 (456)
T 2vdc_G 372 KALGFE---PEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVR 420 (456)
T ss_dssp ECSCEE---CCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGS
T ss_pred ECCCCC---CCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccC
Confidence 999999 6543 3332221 1245999999986
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-26 Score=227.31 Aligned_cols=261 Identities=16% Similarity=0.155 Sum_probs=176.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+||||||||+++|..|++.|++|+|||+++.+||+|.. .. . .+
T Consensus 129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~-~~----------k-------~~---------------- 174 (965)
T 2gag_A 129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD-TA----------G-------EQ---------------- 174 (965)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGG-SS----------C-------CE----------------
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceecc-CC----------c-------cc----------------
Confidence 68999999999999999999999999999999889888873 10 0 00
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCC--------CcEEEEEee-c-CCceE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVES--------NKWKVKSRK-K-DDVVE 151 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~--------~~~~v~~~~-g-~~~~~ 151 (354)
++... ..++...+.+.+.++ +++ ++.+++|..+...+. +.+.+...+ . .+...
T Consensus 175 i~~~~--------------~~~~~~~~~~~l~~~~~v~--~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~ 238 (965)
T 2gag_A 175 IDGMD--------------SSAWIEQVTSELAEAEETT--HLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIW 238 (965)
T ss_dssp ETTEE--------------HHHHHHHHHHHHHHSTTEE--EESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEE
T ss_pred cCCCC--------------HHHHHHHHHHHHhhcCCcE--EEeCCEEEeeecCCceeeeEeecccccccccccCCCCceE
Confidence 00000 144445555555554 676 888889988863210 011111100 0 01124
Q ss_pred EEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeeccc---CCC-CCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEE
Q 018550 152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHN---YRI-PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227 (354)
Q Consensus 152 ~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~---~~~-~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~ 227 (354)
.+.||+||+||| +.++.|+++|.+. ++ +++... +.. .....+++++|||+|++|+|+|..|++.|.+|++++
T Consensus 239 ~i~~d~lVlATG--s~p~~~~ipG~~~-~g-v~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~ 314 (965)
T 2gag_A 239 HIRAKQVVLATG--AHERPIVFENNDR-PG-IMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVID 314 (965)
T ss_dssp EEEEEEEEECCC--EEECCCCCBTCCS-TT-EEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEE
T ss_pred EEECCEEEECCC--CccCCCCCCCCCC-CC-EEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Confidence 789999999999 7888888888764 22 222211 111 122356899999999999999999999999999999
Q ss_pred ecCC-ccccccCCCCC-CeEEecceeEEec--CCc---EEEcc-------C--cEEecCEEEEcccCCCccCcccccCch
Q 018550 228 RSVA-DETHEKQPGYD-NMWLHSMVERANE--DGT---VVFRN-------G--RVVSADVIMHCTGLTGTSTTTLFLKPM 291 (354)
Q Consensus 228 r~~~-~~~~~~l~~~~-~~~~~~~v~~v~~--~~~---v~~~~-------g--~~~~~D~vi~a~G~~~~~p~~~~l~~~ 291 (354)
+++. ....+++++.+ +++.++.|+++.. ++. |++.+ | +++++|.|++|+|++ ||++++...
T Consensus 315 ~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~---P~~~l~~~~ 391 (965)
T 2gag_A 315 ARSSISAAAAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFN---PVVHLHSQR 391 (965)
T ss_dssp SCSSCCHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEE---ECCHHHHHT
T ss_pred CCCccchhHHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcC---cChHHHHhC
Confidence 8874 11134444455 8999999999986 442 66654 4 679999999999999 877776432
Q ss_pred h---------------hhhceeeeecccchh-----hHHHHHHHhhhcc
Q 018550 292 A---------------LLLWMTIVLGHCTST-----FFRQSWHQAFHLL 320 (354)
Q Consensus 292 ~---------------~~~~~i~a~GD~~~~-----~~~~~~~~~~~~~ 320 (354)
+ ....+|||+|||+.. ...++...|.++.
T Consensus 392 ~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l~~A~~~G~~aA~~i~ 440 (965)
T 2gag_A 392 QGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDTASALSTGAATGAAAA 440 (965)
T ss_dssp TCCEEEETTTTEEEECSCCTTEEECGGGGTCCSHHHHHHHHHHHHHHHH
T ss_pred CCcEEEcCcccccccCCCCCCEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 1 123469999999873 2445555555553
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-27 Score=221.68 Aligned_cols=220 Identities=14% Similarity=0.232 Sum_probs=140.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|||||||+||+.+|..|++.+++|+|||+++.+ .|..+......+....
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~---------------------------~~~PlL~~va~G~l~~- 93 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF---------------------------LFTPLLPSAPVGTVDE- 93 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE---------------------------ECGGGGGGTTTTSSCG-
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc---------------------------ccccchhHHhhccccH-
Confidence 468999999999999999999999999999997532 1111110000000000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH--hCCcceEEeceEEEEEEEeCCCcEEEEEeec-------------
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE--FGVDQVVRLHTEVLNARLVESNKWKVKSRKK------------- 146 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g------------- 146 (354)
.++...++..... .+++ + ...+|++|+.+. +..++...++
T Consensus 94 ---------------------~~i~~p~~~~~~~~~~~v~--~-~~~~v~~ID~~~-k~V~l~~~~~~~~~~~~~~~~~~ 148 (502)
T 4g6h_A 94 ---------------------KSIIEPIVNFALKKKGNVT--Y-YEAEATSINPDR-NTVTIKSLSAVSQLYQPENHLGL 148 (502)
T ss_dssp ---------------------GGGEEEHHHHHTTCSSCEE--E-EEEEEEEEEGGG-TEEEEEEEEEEEECSSSCCCCCC
T ss_pred ---------------------HHhhhhHHHHHHhhcCCeE--E-EEEEEEEEEhhh-CEEEEeecccceeeccccccccc
Confidence 1111112222221 2333 3 347889998755 4444433211
Q ss_pred -CCceEEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccC--------------------CCC--CCCCCCeEEEE
Q 018550 147 -DDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY--------------------RIP--NPFQDQVVILI 203 (354)
Q Consensus 147 -~~~~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~--------------------~~~--~~~~~~~v~Vi 203 (354)
.+...++.||+||+||| +.++.+.+||..+.. +..... ... ......+++||
T Consensus 149 ~~~~~~~i~YD~LViAtG--s~~~~~~ipG~~e~a---~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVv 223 (502)
T 4g6h_A 149 HQAEPAEIKYDYLISAVG--AEPNTFGIPGVTDYG---HFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVV 223 (502)
T ss_dssp CTTCCEEEECSEEEECCC--CEECCTTCTTHHHHC---EECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEE
T ss_pred ccCCceEEeCCEEEEcCC--cccccCCccCccccc---CCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEE
Confidence 11235899999999999 899999999976421 111100 000 00123579999
Q ss_pred ccCCCHHHHHHHHhccC--------------CEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCc
Q 018550 204 GHYASGLDIKRDLAGFA--------------KEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGT 258 (354)
Q Consensus 204 G~G~~g~e~a~~l~~~g--------------~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~ 258 (354)
|+|++|+|+|..|++.+ .+|+++++.+. +...+.|++.+ ++++++.|+++++++
T Consensus 224 GgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~- 302 (502)
T 4g6h_A 224 GGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQ- 302 (502)
T ss_dssp CCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEECSSE-
T ss_pred CCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEeCCc-
Confidence 99999999999987642 57999999875 12233445555 899999999998776
Q ss_pred EEE----ccC----cEEecCEEEEcccCCC
Q 018550 259 VVF----RNG----RVVSADVIMHCTGLTG 280 (354)
Q Consensus 259 v~~----~~g----~~~~~D~vi~a~G~~~ 280 (354)
+.+ .|| +++++|+||||+|.+|
T Consensus 303 ~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~ 332 (502)
T 4g6h_A 303 LLAKTKHEDGKITEETIPYGTLIWATGNKA 332 (502)
T ss_dssp EEEEEECTTSCEEEEEEECSEEEECCCEEC
T ss_pred eEEEEEecCcccceeeeccCEEEEccCCcC
Confidence 333 454 4699999999999994
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-26 Score=211.02 Aligned_cols=255 Identities=18% Similarity=0.103 Sum_probs=165.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHH---cCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR---EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~---~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
+++|+|||||++|+++|..|++ .|.+|+|||+++.++..... . + .. .
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~----~-----------------~------~~---~ 50 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPAL----P-----------------H------VA---I 50 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSS----C-----------------C------CC---S
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccch----h-----------------h------cc---c
Confidence 3689999999999999999999 89999999998644211110 0 0 00 0
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
+. ....++...+.+.+.+.+++ +..+ +|++++.++ ..+++.++.+...++.||+|
T Consensus 51 ---~~----------------~~~~~~~~~~~~~~~~~gv~--~~~~-~v~~i~~~~---~~V~~~~g~~~~~~~~~d~l 105 (409)
T 3h8l_A 51 ---GV----------------RDVDELKVDLSEALPEKGIQ--FQEG-TVEKIDAKS---SMVYYTKPDGSMAEEEYDYV 105 (409)
T ss_dssp ---SC----------------CCCCCEEEEHHHHTGGGTCE--EEEC-EEEEEETTT---TEEEEECTTSCEEEEECSEE
T ss_pred ---CC----------------cCHHHHHHHHHHHHhhCCeE--EEEe-eEEEEeCCC---CEEEEccCCcccceeeCCEE
Confidence 00 00022233455556667888 7665 888887643 35677766544567999999
Q ss_pred EEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCC------CCCeEEEEccCC-------------------------
Q 018550 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF------QDQVVILIGHYA------------------------- 207 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~------~~~~v~ViG~G~------------------------- 207 (354)
|+||| +.++.|.++|.+. ...+.+.+.+.... ..++++|||+|.
T Consensus 106 ViAtG--~~~~~~~ipG~~~---~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~ 180 (409)
T 3h8l_A 106 IVGIG--AHLATELVKGWDK---YGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEG 180 (409)
T ss_dssp EECCC--CEECGGGSBTHHH---HCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCH
T ss_pred EECCC--CCcCccCCCChhh---cCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCC
Confidence 99999 7888888888664 22222222111100 125677999992
Q ss_pred CHHHHHHH----HhccC----CEEEEEEecCC---------ccccccCCCCC-CeEEecceeEEecCCcEEEccCcEEec
Q 018550 208 SGLDIKRD----LAGFA----KEVHIASRSVA---------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSA 269 (354)
Q Consensus 208 ~g~e~a~~----l~~~g----~~v~~~~r~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~ 269 (354)
.++|+|.. +.+.| .+|+++++.+. +...+.+++.+ +++.++.|++++.++ |++++|+++++
T Consensus 181 ~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~-v~~~~g~~~~~ 259 (409)
T 3h8l_A 181 PVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHE-IVDEKGNTIPA 259 (409)
T ss_dssp HHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSSE-EEETTSCEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCCe-EEECCCCEEee
Confidence 36788754 45666 48999998762 11222233444 888899999998877 99999999999
Q ss_pred CEEEEcccCCCccCcccccCch--hh----------------hhceeeeecccchh--------hHHHHHHHhhhccC
Q 018550 270 DVIMHCTGLTGTSTTTLFLKPM--AL----------------LLWMTIVLGHCTST--------FFRQSWHQAFHLLG 321 (354)
Q Consensus 270 D~vi~a~G~~~~~p~~~~l~~~--~~----------------~~~~i~a~GD~~~~--------~~~~~~~~~~~~~~ 321 (354)
|+|++|+|+. |+. ++... .. ...+||++|||+.. ...|+...|.++..
T Consensus 260 D~vi~a~G~~---~~~-~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~ 333 (409)
T 3h8l_A 260 DITILLPPYT---GNP-ALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLAN 333 (409)
T ss_dssp SEEEEECCEE---CCH-HHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCC---ccH-HHHhccccCcCCCCCEEeCcccccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999 442 22222 11 12349999999951 34555555655533
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-26 Score=208.20 Aligned_cols=235 Identities=19% Similarity=0.248 Sum_probs=156.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-c------CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR-E------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP 74 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~-~------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (354)
+++|+||||||+|+++|..|++ . |.+|+|||+.+.+||.|++ ++.|.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~---------gv~p~----------------- 56 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS---------GVAPD----------------- 56 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHH---------TSCTT-----------------
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCcccc---------ccCCC-----------------
Confidence 4799999999999999999999 7 9999999998888888865 22111
Q ss_pred cccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
++...++..++.+.+.+.+++ ++.+.++ + .. +++.++ .+.
T Consensus 57 ------------------------~~~~~~~~~~~~~~~~~~~v~--~~~~v~v------~-~~--v~~~~~-----~~~ 96 (456)
T 1lqt_A 57 ------------------------HPKIKSISKQFEKTAEDPRFR--FFGNVVV------G-EH--VQPGEL-----SER 96 (456)
T ss_dssp ------------------------CTGGGGGHHHHHHHHTSTTEE--EEESCCB------T-TT--BCHHHH-----HHH
T ss_pred ------------------------CCCHHHHHHHHHHHHhcCCCE--EEeeEEE------C-CE--EEECCC-----eEe
Confidence 011145666777777666766 6665432 1 21 333332 478
Q ss_pred eCEEEEeeCCCCC-cccCCCCCCCCCCcceeecccC-----------CCCCCCCCCeEEEEccCCCHHHHHHHHhcc---
Q 018550 155 FDAVVVCNGHFSV-PRLAQVPGIDSWPGKQMHSHNY-----------RIPNPFQDQVVILIGHYASGLDIKRDLAGF--- 219 (354)
Q Consensus 155 ~d~vIlAtG~~s~-~~~p~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~--- 219 (354)
||+||+||| +. ++.++++|.+. .+ +++...+ ++.....+++++|||+|++|+|+|..|++.
T Consensus 97 ~d~lViAtG--~~~~~~~~ipG~~~-~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~ 172 (456)
T 1lqt_A 97 YDAVIYAVG--AQSDRMLNIPGEDL-PG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDV 172 (456)
T ss_dssp SSEEEECCC--CCEECCCCCTTTTS-TT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHH
T ss_pred CCEEEEeeC--CCCCCCCCCCCCCC-CC-cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhh
Confidence 999999999 55 67778888762 22 3332211 222234689999999999999999999874
Q ss_pred -----------------C-CEEEEEEecCCcc------------------------cc-------------------cc-
Q 018550 220 -----------------A-KEVHIASRSVADE------------------------TH-------------------EK- 237 (354)
Q Consensus 220 -----------------g-~~v~~~~r~~~~~------------------------~~-------------------~~- 237 (354)
+ ++|+++.|+++.. .+ +.
T Consensus 173 l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (456)
T 1lqt_A 173 LARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVL 252 (456)
T ss_dssp HTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHH
T ss_pred hcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHH
Confidence 4 5899999976410 00 01
Q ss_pred ---CCC------CC-CeEEecceeEEecCCc---EEEc----------------cC--cEEecCEEEEcccCCCcc-Ccc
Q 018550 238 ---QPG------YD-NMWLHSMVERANEDGT---VVFR----------------NG--RVVSADVIMHCTGLTGTS-TTT 285 (354)
Q Consensus 238 ---l~~------~~-~~~~~~~v~~v~~~~~---v~~~----------------~g--~~~~~D~vi~a~G~~~~~-p~~ 285 (354)
+.+ .+ ++++++.+.++..++. |++. +| ++++||+||+|+|++|+. +..
T Consensus 253 ~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~l~gl 332 (456)
T 1lqt_A 253 RGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGL 332 (456)
T ss_dssp HHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCCCTTS
T ss_pred HHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCCCCCC
Confidence 122 23 6788888888876543 5554 34 468999999999999432 011
Q ss_pred cccCchh---------hhhceeeeecccch
Q 018550 286 LFLKPMA---------LLLWMTIVLGHCTS 306 (354)
Q Consensus 286 ~~l~~~~---------~~~~~i~a~GD~~~ 306 (354)
++-.... ....+|||+|||..
T Consensus 333 ~~d~~g~i~vn~~~rvt~~pgvya~GD~~~ 362 (456)
T 1lqt_A 333 PFDDQSGTIPNVGGRINGSPNEYVVGWIKR 362 (456)
T ss_dssp CCBTTTTBCCEETTEETTCSSEEECTHHHH
T ss_pred cccCCCCeeECCCCcCCCCCCEEEEeccCC
Confidence 1111100 11356999999985
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-26 Score=207.87 Aligned_cols=243 Identities=12% Similarity=0.181 Sum_probs=157.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHH---cCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR---EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~---~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
+++|+|||||++|+++|..|++ .|++|+|||+++.+. + .........
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~----~-----------------------~~~~~~~~~--- 53 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ----F-----------------------VPSNPWVGV--- 53 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE----C-----------------------GGGHHHHHH---
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc----c-----------------------cCCcccccc---
Confidence 4799999999999999999999 899999999976321 1 000000000
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
. .....++...+.+.+.+.+++ +. ..+|+.++.++ .++++.++. ++.||+|
T Consensus 54 -----g--------------~~~~~~~~~~l~~~~~~~gv~--~~-~~~v~~id~~~---~~V~~~~g~----~i~~d~l 104 (437)
T 3sx6_A 54 -----G--------------WKERDDIAFPIRHYVERKGIH--FI-AQSAEQIDAEA---QNITLADGN----TVHYDYL 104 (437)
T ss_dssp -----T--------------SSCHHHHEEECHHHHHTTTCE--EE-CSCEEEEETTT---TEEEETTSC----EEECSEE
T ss_pred -----C--------------ccCHHHHHHHHHHHHHHCCCE--EE-EeEEEEEEcCC---CEEEECCCC----EEECCEE
Confidence 0 001145555566677777888 65 57899987643 367777664 7999999
Q ss_pred EEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCC--------CCCCeEEEEccCCCH------HHHH----HHHhccC
Q 018550 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP--------FQDQVVILIGHYASG------LDIK----RDLAGFA 220 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~v~ViG~G~~g------~e~a----~~l~~~g 220 (354)
|+||| +.++.|.++|.....+.....+...+... ..+++++|||+|+.| +|+| ..+.+.|
T Consensus 105 viAtG--~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g 182 (437)
T 3sx6_A 105 MIATG--PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRG 182 (437)
T ss_dssp EECCC--CEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTT
T ss_pred EECCC--CCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcC
Confidence 99999 78888889998754233332222211100 013457899986554 8888 4455666
Q ss_pred CE-----EEEEEecCCc-------------cccccCCCCC-CeEEecceeEEecCCcEEEcc---------CcEEecCEE
Q 018550 221 KE-----VHIASRSVAD-------------ETHEKQPGYD-NMWLHSMVERANEDGTVVFRN---------GRVVSADVI 272 (354)
Q Consensus 221 ~~-----v~~~~r~~~~-------------~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~---------g~~~~~D~v 272 (354)
.+ |+++++.+.- ...+.+++.+ +++.++.|++++.++ +++++ ++++++|++
T Consensus 183 ~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~~-v~~~~~~~~g~~~~~~~i~~D~v 261 (437)
T 3sx6_A 183 MRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNK-MYVTQVDEKGETIKEMVLPVKFG 261 (437)
T ss_dssp CGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEETTE-EEEEEECTTSCEEEEEEEECSEE
T ss_pred CcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEECCe-EEEEecccCCccccceEEEEeEE
Confidence 54 9999987631 1112233444 889999999998776 65554 567899999
Q ss_pred EEcccCCCccCccc---ccCchh---------h-hhceeeeecccch
Q 018550 273 MHCTGLTGTSTTTL---FLKPMA---------L-LLWMTIVLGHCTS 306 (354)
Q Consensus 273 i~a~G~~~~~p~~~---~l~~~~---------~-~~~~i~a~GD~~~ 306 (354)
++++|+.+..++.+ +..+.+ . ...+|||+|||+.
T Consensus 262 v~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~ 308 (437)
T 3sx6_A 262 MMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIA 308 (437)
T ss_dssp EEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEEECGGGBC
T ss_pred EEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEEEEEEEec
Confidence 99999884323222 111111 0 1245999999986
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-25 Score=203.08 Aligned_cols=160 Identities=24% Similarity=0.351 Sum_probs=113.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+++|+|||||++|+.+|..|++.| .+|+|||+.+.++|.|.+ ++.|.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~---------g~~p~---------------------- 54 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF---------GVAPD---------------------- 54 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH---------TSCTT----------------------
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeec---------ccCCC----------------------
Confidence 478999999999999999999998 999999998888877765 11111
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
++...++..++.+.+++.+++ ++.++.+. . .+++.+. .+.||+||
T Consensus 55 -------------------~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~-------~--~V~~~~~-----~~~~d~lV 99 (460)
T 1cjc_A 55 -------------------HPEVKNVINTFTQTARSDRCA--FYGNVEVG-------R--DVTVQEL-----QDAYHAVV 99 (460)
T ss_dssp -------------------CGGGGGHHHHHHHHHTSTTEE--EEBSCCBT-------T--TBCHHHH-----HHHSSEEE
T ss_pred -------------------CccHHHHHHHHHHHHHhCCcE--EEeeeEEe-------e--EEEeccc-----eEEcCEEE
Confidence 111145667777777777777 77766551 1 1222221 46899999
Q ss_pred EeeCCCCCc-ccCCCCCCCCCCcceeecccC----------CCCC-CCCCCeEEEEccCCCHHHHHHHHh----------
Q 018550 160 VCNGHFSVP-RLAQVPGIDSWPGKQMHSHNY----------RIPN-PFQDQVVILIGHYASGLDIKRDLA---------- 217 (354)
Q Consensus 160 lAtG~~s~~-~~p~~~g~~~~~~~~~~~~~~----------~~~~-~~~~~~v~ViG~G~~g~e~a~~l~---------- 217 (354)
+||| +.+ +.|+++|.+. . .+++...+ .... ...+++++|||+|++|+|+|..|+
T Consensus 100 lAtG--s~~~~~~~ipG~~~-~-gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~td 175 (460)
T 1cjc_A 100 LSYG--AEDHQALDIPGEEL-P-GVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTD 175 (460)
T ss_dssp ECCC--CCEECCCCCTTTTS-T-TEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSC
T ss_pred EecC--cCCCCCCCCCCCCC-C-cEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhcccc
Confidence 9999 664 7788888753 1 22332221 1111 236799999999999999999998
Q ss_pred ----------ccCC-EEEEEEecCC
Q 018550 218 ----------GFAK-EVHIASRSVA 231 (354)
Q Consensus 218 ----------~~g~-~v~~~~r~~~ 231 (354)
+.+. +|+++.|+++
T Consensus 176 i~~~a~~~l~~~g~~~V~lv~r~~~ 200 (460)
T 1cjc_A 176 ITEAALGALRQSRVKTVWIVGRRGP 200 (460)
T ss_dssp CCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred ccHHHHHHHhhCCCcEEEEEEcCCh
Confidence 4565 7999998764
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-24 Score=196.94 Aligned_cols=236 Identities=18% Similarity=0.146 Sum_probs=157.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||++|+++|..|++. ++|+|||+++.+|+.+..... ..+ +
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~-----------------------------~~~---g 155 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGI-----------------------------KQE---G 155 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCS-----------------------------EET---T
T ss_pred CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeecccc-----------------------------ccC---C
Confidence 5899999999999999999999 999999999888887765200 000 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
++. . ..++...+.+.+ ..+++ ++++++|.++..++ +.+.+...+. +....+.||+||+||
T Consensus 156 ~~~-~--------------~~~~~~~l~~~l-~~~v~--~~~~~~v~~i~~~~-~~~~~~~~~~-~~~~~~~~d~lvlAt 215 (493)
T 1y56_A 156 FNK-D--------------SRKVVEELVGKL-NENTK--IYLETSALGVFDKG-EYFLVPVVRG-DKLIEILAKRVVLAT 215 (493)
T ss_dssp TTE-E--------------HHHHHHHHHHTC-CTTEE--EETTEEECCCEECS-SSEEEEEEET-TEEEEEEESCEEECC
T ss_pred CCC-C--------------HHHHHHHHHHHH-hcCCE--EEcCCEEEEEEcCC-cEEEEEEecC-CeEEEEECCEEEECC
Confidence 100 0 134444433333 33555 78899999998766 5565554332 223478999999999
Q ss_pred CCCCCcccCCCCCCCCCCcceeecccCC----CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccccccC
Q 018550 163 GHFSVPRLAQVPGIDSWPGKQMHSHNYR----IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238 (354)
Q Consensus 163 G~~s~~~~p~~~g~~~~~~~~~~~~~~~----~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~l 238 (354)
| +.++.|+++|.+. ++ ++...... ......+++++|||+|.+|+| ..+.+.|
T Consensus 216 G--a~~~~~~~~g~~~-~g-v~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle--~~l~~~G------------------ 271 (493)
T 1y56_A 216 G--AIDSTMLFENNDM-PG-VFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI--QELERWG------------------ 271 (493)
T ss_dssp C--EEECCCCCTTTTS-TT-EEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH--HHHHHHT------------------
T ss_pred C--CCccCCCCCCCCC-CC-EEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH--HHHHhCC------------------
Confidence 9 7888888888754 21 22221110 011235689999999999999 2222222
Q ss_pred CCCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCCccCcccccCchhh------------------hhce
Q 018550 239 PGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMAL------------------LLWM 297 (354)
Q Consensus 239 ~~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~------------------~~~~ 297 (354)
.+++.++.|+++..++. +++.+|+++++|.|++|+|+. |++++++..+. ...+
T Consensus 272 ---V~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~---p~~~l~~~~g~~~~~~~~g~i~~vd~~~~s~~~ 345 (493)
T 1y56_A 272 ---IDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRR---PDINPITQAGGKLRFRRGYYSPVLDEYHRIKDG 345 (493)
T ss_dssp ---CEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEE---ECCHHHHHTTCCEEEETTEEEECCCTTSEEETT
T ss_pred ---cEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcC---cCchHHHhcCCCccccCCceeeccccccCcCCC
Confidence 25666777888775543 667788899999999999999 77766544322 1235
Q ss_pred eeeecccchh-----hHHHHHHHhhhccC
Q 018550 298 TIVLGHCTST-----FFRQSWHQAFHLLG 321 (354)
Q Consensus 298 i~a~GD~~~~-----~~~~~~~~~~~~~~ 321 (354)
||++|||... ...++...|.++.+
T Consensus 346 vya~GD~~~~~~~~~A~~~g~~aa~~i~~ 374 (493)
T 1y56_A 346 IYVAGSAVSIKPHYANYLEGKLVGAYILK 374 (493)
T ss_dssp EEECSTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccCCccCHHHHHHHHHHHHHHHHH
Confidence 9999999873 34555555555543
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-24 Score=214.21 Aligned_cols=250 Identities=17% Similarity=0.210 Sum_probs=162.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.++|+||||||||+++|..|++.|+ +|+|||+.+.+||.+.+. +
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~-----------------------------------i 231 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE-----------------------------------I 231 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT-----------------------------------S
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccccc-----------------------------------C
Confidence 3689999999999999999999999 799999988888887541 0
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
+.+.. . .++.++..+.+.+.+++ ++.++.+.. ..+++.++ .++.||+||+
T Consensus 232 p~~~~--~--------------~~~~~~~~~~~~~~gv~--~~~~~~v~~--------~~v~~~~~----~~~~~d~vvl 281 (1025)
T 1gte_A 232 PQFRL--P--------------YDVVNFEIELMKDLGVK--IICGKSLSE--------NEITLNTL----KEEGYKAAFI 281 (1025)
T ss_dssp CTTTS--C--------------HHHHHHHHHHHHTTTCE--EEESCCBST--------TSBCHHHH----HHTTCCEEEE
T ss_pred CcccC--C--------------HHHHHHHHHHHHHCCcE--EEcccEecc--------ceEEhhhc----CccCCCEEEE
Confidence 01111 0 45566667777778888 887766521 12333332 1468999999
Q ss_pred eeCCCCCcccCCC-CCCCCCCcceeecccC--------------CCC-CCCCCCeEEEEccCCCHHHHHHHHhccCC-EE
Q 018550 161 CNGHFSVPRLAQV-PGIDSWPGKQMHSHNY--------------RIP-NPFQDQVVILIGHYASGLDIKRDLAGFAK-EV 223 (354)
Q Consensus 161 AtG~~s~~~~p~~-~g~~~~~~~~~~~~~~--------------~~~-~~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v 223 (354)
|||+ ..|+.+++ +|..... .+++..++ .+. ....+++|+|||||.+|+|+|..+.+.|. +|
T Consensus 282 AtGa-~~p~~l~~~~G~~~~~-gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~V 359 (1025)
T 1gte_A 282 GIGL-PEPKTDDIFQGLTQDQ-GFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRV 359 (1025)
T ss_dssp CCCC-CEECCCGGGTTCCTTT-TEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEE
T ss_pred ecCC-CCCCCCCCCCCCCCCC-CEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEE
Confidence 9993 14765543 3443211 22321111 111 12246799999999999999999999995 89
Q ss_pred EEEEecCC------ccccccCCCCC-CeEEecceeEEec-CCc---EEEc------cC---------cEEecCEEEEccc
Q 018550 224 HIASRSVA------DETHEKQPGYD-NMWLHSMVERANE-DGT---VVFR------NG---------RVVSADVIMHCTG 277 (354)
Q Consensus 224 ~~~~r~~~------~~~~~~l~~~~-~~~~~~~v~~v~~-~~~---v~~~------~g---------~~~~~D~vi~a~G 277 (354)
++++|++. +..++.+.+.+ +++....++++.. ++. |++. +| .++++|+||+|+|
T Consensus 360 tvv~r~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G 439 (1025)
T 1gte_A 360 FLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG 439 (1025)
T ss_dssp EEECSSCGGGCCSCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSC
T ss_pred EEEEecChhhCCCCHHHHHHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCC
Confidence 99999863 22223333344 7777777777763 332 2222 22 3689999999999
Q ss_pred CCCccCcccccCch--------h----------hhhceeeeecccchh------hHHHHHHHhhhcc
Q 018550 278 LTGTSTTTLFLKPM--------A----------LLLWMTIVLGHCTST------FFRQSWHQAFHLL 320 (354)
Q Consensus 278 ~~~~~p~~~~l~~~--------~----------~~~~~i~a~GD~~~~------~~~~~~~~~~~~~ 320 (354)
+.+ |+..++.+. + ....+|||+|||+.. +..++..+|.++.
T Consensus 440 ~~~--~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~ 504 (1025)
T 1gte_A 440 SVL--RDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIH 504 (1025)
T ss_dssp EEC--CCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHH
T ss_pred CCC--CchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 983 233333210 0 112459999999872 3456666666664
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-22 Score=178.93 Aligned_cols=253 Identities=18% Similarity=0.093 Sum_probs=151.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
.|+|||||||+||+++|..|++.+ .+|+|||+++........ + ........
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~----------------------~-----~v~~g~~~ 54 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMS----------------------N-----EVIGGDRE 54 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTH----------------------H-----HHHHTSSC
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCH----------------------H-----HHhcCCCC
Confidence 489999999999999999999876 589999987542111000 0 00000000
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
. +++...+. .+...+++ +. ..+|+.|+.+ ..++.+.++. ++.||+||
T Consensus 55 ~----------------------~~~~~~~~-~~~~~gv~--~i-~~~v~~id~~---~~~v~~~~g~----~i~yd~Lv 101 (401)
T 3vrd_B 55 L----------------------ASLRVGYD-GLRAHGIQ--VV-HDSALGIDPD---KKLVKTAGGA----EFAYDRCV 101 (401)
T ss_dssp G----------------------GGGEECSH-HHHHTTCE--EE-CSCEEEEETT---TTEEEETTSC----EEECSEEE
T ss_pred H----------------------HHHhhCHH-HHHHCCCE--EE-EeEEEEEEcc---CcEEEecccc----eeecceee
Confidence 0 00000011 12345777 54 4678888764 3466777765 89999999
Q ss_pred EeeCCCCCcccCCCCCCCCCCcc-eeecccCCCC--------CCCCCCeEEEEccCCC-----------HHHHHHHHhcc
Q 018550 160 VCNGHFSVPRLAQVPGIDSWPGK-QMHSHNYRIP--------NPFQDQVVILIGHYAS-----------GLDIKRDLAGF 219 (354)
Q Consensus 160 lAtG~~s~~~~p~~~g~~~~~~~-~~~~~~~~~~--------~~~~~~~v~ViG~G~~-----------g~e~a~~l~~~ 219 (354)
+||| +.++.+.++|..+.... ..+.....+. ........+|+++|.. +++++..+.+.
T Consensus 102 iAtG--~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~ 179 (401)
T 3vrd_B 102 VAPG--IDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAH 179 (401)
T ss_dssp ECCC--EEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHH
T ss_pred eccC--CccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhc
Confidence 9999 88888888887753211 1111111000 0112334455544432 34555555554
Q ss_pred C--CEEEEEEecCC------------ccccccCCCCC-CeEEecceeEEecCC---cEEEccCcEEecCEEEEcccCCCc
Q 018550 220 A--KEVHIASRSVA------------DETHEKQPGYD-NMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGLTGT 281 (354)
Q Consensus 220 g--~~v~~~~r~~~------------~~~~~~l~~~~-~~~~~~~v~~v~~~~---~v~~~~g~~~~~D~vi~a~G~~~~ 281 (354)
+ .+|+++.+.+. ......+++.+ +++.++.+..++.+. .+.+.+|+++++|++++++|.+
T Consensus 180 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~-- 257 (401)
T 3vrd_B 180 KSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQR-- 257 (401)
T ss_dssp CTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCEE--
T ss_pred CCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCcC--
Confidence 4 68999988764 11223345555 788888888887443 2888999999999999999998
Q ss_pred cCcccccCchhhh-----------------hceeeeecccchh---------hHHHHHHHhhhcc
Q 018550 282 STTTLFLKPMALL-----------------LWMTIVLGHCTST---------FFRQSWHQAFHLL 320 (354)
Q Consensus 282 ~p~~~~l~~~~~~-----------------~~~i~a~GD~~~~---------~~~~~~~~~~~~~ 320 (354)
|+. ++..++.. ..+|||+|||+.. ...|+...|.++.
T Consensus 258 -~~~-~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~ 320 (401)
T 3vrd_B 258 -AGK-IAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVV 320 (401)
T ss_dssp -ECH-HHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHH
T ss_pred -Cch-hHhhccccccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHH
Confidence 442 22221111 2349999999752 2455555565553
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-24 Score=195.16 Aligned_cols=217 Identities=14% Similarity=0.164 Sum_probs=125.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
|.|+|||||||+||+++|..|++.+ .+|+|||+++.+.- ..+......+..
T Consensus 1 M~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~---------------------------~p~l~~v~~g~~ 53 (430)
T 3hyw_A 1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGF---------------------------TPAFPHLAMGWR 53 (430)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEEC---------------------------GGGHHHHHHTCS
T ss_pred CCCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCcc---------------------------CccHHHHhcCCC
Confidence 7889999999999999999999876 79999999764310 000000000000
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
.. +++...+++.+++.+++ +.. .+|++|+.+ ..+|++.+|. ++.||+|
T Consensus 54 ~~----------------------~~i~~~~~~~~~~~gv~--~i~-~~v~~Id~~---~~~V~~~~g~----~i~YD~L 101 (430)
T 3hyw_A 54 KF----------------------EDISVPLAPLLPKFNIE--FIN-EKAESIDPD---ANTVTTQSGK----KIEYDYL 101 (430)
T ss_dssp CG----------------------GGSEEESTTTGGGGTEE--EEC-SCEEEEETT---TTEEEETTCC----EEECSEE
T ss_pred CH----------------------HHhhhcHHHHHHHCCcE--EEE-eEEEEEECC---CCEEEECCCC----EEECCEE
Confidence 00 01111112223445666 554 689999864 3467787775 8999999
Q ss_pred EEeeCCCCCcccCCCCCCCCCCcceeecccCC---C-CC-CCCCCeEEEEccCC------CHHHHHHH----HhccC---
Q 018550 159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR---I-PN-PFQDQVVILIGHYA------SGLDIKRD----LAGFA--- 220 (354)
Q Consensus 159 IlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~---~-~~-~~~~~~v~ViG~G~------~g~e~a~~----l~~~g--- 220 (354)
|+||| +.+. ++++|..+............ + .. ....+.++|+|++. .+.|++.. +.+.+
T Consensus 102 ViAtG--~~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~ 178 (430)
T 3hyw_A 102 VIATG--PKLV-FGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRY 178 (430)
T ss_dssp EECCC--CEEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGG
T ss_pred EEeCC--CCcc-CCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccc
Confidence 99999 5543 45777543110000000000 0 00 01234455666553 12233333 33333
Q ss_pred -CEEEEEEecCCc--------c-----ccccCCCCC-CeEEecceeEEecCCcEEEcc--C--cEEecCEEEEcccCCC
Q 018550 221 -KEVHIASRSVAD--------E-----THEKQPGYD-NMWLHSMVERANEDGTVVFRN--G--RVVSADVIMHCTGLTG 280 (354)
Q Consensus 221 -~~v~~~~r~~~~--------~-----~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~--g--~~~~~D~vi~a~G~~~ 280 (354)
.+|+++...+.. . ..+.+++.+ +++.++.|++++.++ +++++ | +++++|+++|++|.++
T Consensus 179 ~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~-~~~~~~~g~~~~i~~d~vi~~~G~~~ 256 (430)
T 3hyw_A 179 KVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDK-VIYEDLNGNTHEVPAKFTMFMPSFQG 256 (430)
T ss_dssp GCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSSE-EEEECTTSCEEEEECSEEEEECEEEC
T ss_pred cceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCCc-eEEEeeCCCceEeecceEEEeccCCC
Confidence 468888765530 0 111223344 899999999998776 65544 3 5799999999999993
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-16 Score=143.15 Aligned_cols=154 Identities=20% Similarity=0.395 Sum_probs=94.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCC--CCCCCCCCCCccccc--ccccchhccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES--DPLGVDPNRYPVHSS--LYKSLRVNLPRELM 78 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 78 (354)
+||+|||||++|+++|..|+++|.+|+|+|+++.+|+.+...++... ...++.|.+.+.... ....+....+....
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence 78999999999999999999999999999998877655443221110 001222221111000 00000000000000
Q ss_pred cc---cCCCCCccCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe----CCCcEEEEEeecCCc
Q 018550 79 GF---QAYPFVARNYEGSVDLRRYP--GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDV 149 (354)
Q Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~----~~~~~~v~~~~g~~~ 149 (354)
.+ .+.++... .....|| ....+.+.+.+.+++.+++ ++++++|+++..+ + +.|.+.+.++
T Consensus 85 ~~~~~~Gi~~~~~-----~~g~~~p~~~~~~l~~~L~~~~~~~Gv~--i~~~~~v~~i~~~~~g~~-~~~~v~~~~g--- 153 (401)
T 2gqf_A 85 SLVAEQGITYHEK-----ELGQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEK-VRFVLQVNST--- 153 (401)
T ss_dssp HHHHHTTCCEEEC-----STTEEEETTCTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCSCSS-CCEEEEETTE---
T ss_pred HHHHhCCCceEEC-----cCCEEccCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEcccCcCC-CeEEEEECCC---
Confidence 00 01111110 1112222 4588889999999999998 9999999999876 4 5687776543
Q ss_pred eEEEEeCEEEEeeCCCCCcc
Q 018550 150 VEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~ 169 (354)
++.+|.||+|||.++.|.
T Consensus 154 --~i~ad~VVlAtG~~s~p~ 171 (401)
T 2gqf_A 154 --QWQCKNLIVATGGLSMPG 171 (401)
T ss_dssp --EEEESEEEECCCCSSCGG
T ss_pred --EEECCEEEECCCCccCCC
Confidence 689999999999776543
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-14 Score=128.34 Aligned_cols=156 Identities=19% Similarity=0.326 Sum_probs=95.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCC--CCCCCCCCCCccc--ccccccchhcccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES--DPLGVDPNRYPVH--SSLYKSLRVNLPREL 77 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (354)
.+||+|||||++|+++|..|+++|.+|+|+|+.+.+|+.+...++... ....+.+...+.. ...+..+....+...
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF 106 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence 369999999999999999999999999999999888765533221110 0001111110000 000111111111111
Q ss_pred ccc---cCCCCCccCCCCCCCCCCC--CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 78 MGF---QAYPFVARNYEGSVDLRRY--PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 78 ~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
..+ .+.++... .....| .....+.+.+.+.+.+.+++ ++++++|+++..++ +.+.|.+.++ +
T Consensus 107 ~~~~~~~Gi~~~~~-----~~g~~~~~~~~~~l~~~L~~~l~~~Gv~--i~~~~~V~~i~~~~-~~~~V~~~~g-----~ 173 (417)
T 3v76_A 107 VALVERHGIGWHEK-----TLGQLFCDHSAKDIIRMLMAEMKEAGVQ--LRLETSIGEVERTA-SGFRVTTSAG-----T 173 (417)
T ss_dssp HHHHHHTTCCEEEC-----STTEEEESSCHHHHHHHHHHHHHHHTCE--EECSCCEEEEEEET-TEEEEEETTE-----E
T ss_pred HHHHHHcCCCcEEe-----eCCEEeeCCCHHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CEEEEEECCc-----E
Confidence 110 01111110 011112 23468889999999888998 99999999999877 6788887664 7
Q ss_pred EEeCEEEEeeCCCCCccc
Q 018550 153 ETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 153 ~~~d~vIlAtG~~s~~~~ 170 (354)
+.+|.||+|+|.++.|..
T Consensus 174 i~ad~VIlAtG~~S~p~~ 191 (417)
T 3v76_A 174 VDAASLVVASGGKSIPKM 191 (417)
T ss_dssp EEESEEEECCCCSSCGGG
T ss_pred EEeeEEEECCCCccCCCC
Confidence 899999999998776543
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.5e-13 Score=118.99 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=89.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCC---CCCCCCCCCCCcccccccccchhcccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---SDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
+||+||||||+|+++|..|+++|++|+||||.+.+|........+. ....+.......+.. .........+.....
T Consensus 5 yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (397)
T 3oz2_A 5 YDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIAN-EVKGARIYGPSEKRP 83 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEE-EESEEEEECTTCSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhc-ccceEEEEeCCCceE
Confidence 7999999999999999999999999999999876653221110000 000111111000000 000000011100000
Q ss_pred ccCCCCCccCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 80 FQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
+. +.... ..... ....+..+...+.+.+.+.|++ ++++++++++..++ +..........+...++.+|+|
T Consensus 84 ~~-~~~~~-----~~~~~~~~i~R~~~~~~L~~~a~~~G~~--~~~~~~v~~~~~~~-~~~~~v~~~~~~~~~~~~a~~v 154 (397)
T 3oz2_A 84 II-LQSEK-----AGNEVGYVLERDKFDKHLAALAAKAGAD--VWVKSPALGVIKEN-GKVAGAKIRHNNEIVDVRAKMV 154 (397)
T ss_dssp EE-EECSS-----SSCCCEEEECHHHHHHHHHHHHHHHTCE--EESSCCEEEEEEET-TEEEEEEEEETTEEEEEEEEEE
T ss_pred ee-ccccc-----cCCceeEEEEHHHHHHHHHHHHHhcCcE--Eeeeeeeeeeeecc-ceeeeeeecccccceEEEEeEE
Confidence 00 00000 00011 1246788999999999999998 99999999998876 5444333333344567999999
Q ss_pred EEeeCCCCC
Q 018550 159 VVCNGHFSV 167 (354)
Q Consensus 159 IlAtG~~s~ 167 (354)
|.|+|.+|.
T Consensus 155 IgAdG~~S~ 163 (397)
T 3oz2_A 155 IAADGFESE 163 (397)
T ss_dssp EECCCTTCH
T ss_pred EeCCccccH
Confidence 999997664
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=104.07 Aligned_cols=112 Identities=28% Similarity=0.413 Sum_probs=82.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||++|+.+|..|++.|.+|+++|+.+.. +.... ....++
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~---~~~~~------------------------------~~~~~~ 47 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSK---VKGVS------------------------------RVPNYP 47 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCT---TTTCS------------------------------CCCCST
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCc---ccCch------------------------------hhhccC
Confidence 378999999999999999999999999999997522 10000 000001
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.++. .....++.+++.+.+++.+++ ++++ +|++++.++ +.+.+.+.++ ++++|.||+|
T Consensus 48 ~~~~-------------~~~~~~~~~~l~~~~~~~gv~--v~~~-~v~~i~~~~-~~~~v~~~~g-----~i~ad~vI~A 105 (180)
T 2ywl_A 48 GLLD-------------EPSGEELLRRLEAHARRYGAE--VRPG-VVKGVRDMG-GVFEVETEEG-----VEKAERLLLC 105 (180)
T ss_dssp TCTT-------------CCCHHHHHHHHHHHHHHTTCE--EEEC-CCCEEEECS-SSEEEECSSC-----EEEEEEEEEC
T ss_pred CCcC-------------CCCHHHHHHHHHHHHHHcCCE--EEeC-EEEEEEEcC-CEEEEEECCC-----EEEECEEEEC
Confidence 1100 012378889999999999998 8888 999999876 6687877654 6899999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|..
T Consensus 106 ~G--~~~~~ 112 (180)
T 2ywl_A 106 TH--KDPTL 112 (180)
T ss_dssp CT--TCCHH
T ss_pred CC--CCCCc
Confidence 99 55544
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=122.32 Aligned_cols=184 Identities=14% Similarity=0.101 Sum_probs=102.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC-CccceeecCCCCCCCCCCCCCCCCcccc-cccccchhcc------
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNL------ 73 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------ 73 (354)
.+||+|||||+||+++|..|++.|.+|+|+|+.. .+|. .+|.|....... .....+....
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~------------~~Cnps~ggia~~~lv~ei~algg~~~~~ 95 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ------------MSCNPAIGGIGKGHLVKEVDALGGLMAKA 95 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC------------CSSSSEEESTTHHHHHHHHHHTTCSHHHH
T ss_pred cCCEEEECChHHHHHHHHHHHhCCCCEEEEeeccccccc------------ccccccccchhhHHHHHHHHHhccHHHHH
Confidence 3699999999999999999999999999999863 2331 123322111100 0011110000
Q ss_pred -ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceE
Q 018550 74 -PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (354)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~ 151 (354)
......+..+....... ........++..+...+.+.+.+ .+++ + ++++|+++..+++..+.|.+.+| .
T Consensus 96 ~d~~gi~f~~l~~~kgpa--v~~~r~~~Dr~~~~~~L~e~Le~~~GV~--I-~~~~V~~L~~e~g~V~GV~t~dG----~ 166 (651)
T 3ces_A 96 IDQAGIQFRILNASKGPA--VRATRAQADRVLYRQAVRTALENQPNLM--I-FQQAVEDLIVENDRVVGAVTQMG----L 166 (651)
T ss_dssp HHHHEEEEEEESTTSCGG--GCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEESSSBEEEEEETTS----E
T ss_pred hhhcccchhhhhcccCcc--cccchhhCCHHHHHHHHHHHHHhCCCCE--E-EEEEEEEEEecCCEEEEEEECCC----C
Confidence 00000010000000000 00000112346778888888877 5777 6 67899999876523346666655 3
Q ss_pred EEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 152 ~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
.+.+|.||+|||. .+..+.++|...+ .+.+ +| |.+|++++..|.+.|.+|+.+..
T Consensus 167 ~I~Ad~VVLATGt--~s~~~~i~G~~~~----------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t 221 (651)
T 3ces_A 167 KFRAKAVVLTVGT--FLDGKIHIGLDNY----------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLKT 221 (651)
T ss_dssp EEEEEEEEECCST--TTCCEEECC---------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred EEECCEEEEcCCC--CccCccccCcccC----------------CCCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence 7999999999995 4444445554431 1122 56 88999999999999999988864
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=119.62 Aligned_cols=156 Identities=21% Similarity=0.301 Sum_probs=92.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC-CCCCCC---Ccc--cccccccchhccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL-GVDPNR---YPV--HSSLYKSLRVNLP 74 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~-~~~~~~---~~~--~~~~~~~~~~~~~ 74 (354)
|.+||+|||||++|+++|..|+++|.+|+|+|+.+.+|+.....++...... ...+.. .+. ....+..+.....
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN 104 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCH
Confidence 4579999999999999999999999999999998877754433211110000 000000 000 0000000000000
Q ss_pred cccccc---cCCCCCccCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-EEEEEeecC
Q 018550 75 RELMGF---QAYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKD 147 (354)
Q Consensus 75 ~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~ 147 (354)
.....+ .+.++... .....|| ....+.+.+.+.+.+.+++ ++++++|+++..++ +. +.|.+.++.
T Consensus 105 ~~~~~~~~~~G~~~~~~-----~~g~~~p~~~~~~~l~~~L~~~~~~~GV~--i~~~~~V~~i~~~~-~~v~~V~~~~G~ 176 (447)
T 2i0z_A 105 EDIITFFENLGVKLKEE-----DHGRMFPVSNKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYEN-GQTKAVILQTGE 176 (447)
T ss_dssp HHHHHHHHHTTCCEEEC-----GGGEEEETTCCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEET-TEEEEEEETTCC
T ss_pred HHHHHHHHhcCCceEEe-----eCCEEECCCCCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEecC-CcEEEEEECCCC
Confidence 000000 01111100 0011122 3478888888888888998 99999999999866 54 788877653
Q ss_pred CceEEEEeCEEEEeeCCCCCc
Q 018550 148 DVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 148 ~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.+.+|.||+|+|.++.|
T Consensus 177 ----~i~Ad~VVlAtGg~s~~ 193 (447)
T 2i0z_A 177 ----VLETNHVVIAVGGKSVP 193 (447)
T ss_dssp ----EEECSCEEECCCCSSSG
T ss_pred ----EEECCEEEECCCCCcCC
Confidence 69999999999987743
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=120.71 Aligned_cols=153 Identities=25% Similarity=0.254 Sum_probs=92.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee---ecCCCC-C-CCCCCCCCCCCcccccccccchhccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW---IYTSET-E-SDPLGVDPNRYPVHSSLYKSLRVNLPRE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~---~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (354)
+++|+||||||+|+++|..|+++|++|+|||+.+.++..- ..+++. . ....++ ++.+....+..
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl-----------~~~~~~~~~~~ 79 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGI-----------LPRFGEVETST 79 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTC-----------GGGGCSCCBCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCC-----------HHHHHhccccc
Confidence 5789999999999999999999999999999976543110 000000 0 000111 11110000000
Q ss_pred cccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeC
Q 018550 77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD 156 (354)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d 156 (354)
...+.+..+...............++..+.+.+.+.+.+.+++ ++++++|++++.++ +.+++++.++++ .+++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~~~a~ 155 (500)
T 2qa1_A 80 QGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGAD--IRRGHEVLSLTDDG-AGVTVEVRGPEG-KHTLRAA 155 (500)
T ss_dssp EEEETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCE--EEETCEEEEEEEET-TEEEEEEEETTE-EEEEEES
T ss_pred cccccceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCE--EECCcEEEEEEEcC-CeEEEEEEcCCC-CEEEEeC
Confidence 0000000000000000000001234578889999999888888 99999999999887 778888887654 3579999
Q ss_pred EEEEeeCCCCCcc
Q 018550 157 AVVVCNGHFSVPR 169 (354)
Q Consensus 157 ~vIlAtG~~s~~~ 169 (354)
+||.|+|.+|..+
T Consensus 156 ~vVgADG~~S~VR 168 (500)
T 2qa1_A 156 YLVGCDGGRSSVR 168 (500)
T ss_dssp EEEECCCTTCHHH
T ss_pred EEEECCCcchHHH
Confidence 9999999877544
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.4e-12 Score=116.92 Aligned_cols=156 Identities=22% Similarity=0.150 Sum_probs=92.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (354)
.++|+||||||+|+++|..|+++|++|+|||+.+.++..-.- .++.|.. .+..-..++.+....+.....
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~--------~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 83 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRG--------LGFTARTMEVFDQRGILPAFGPVETSTQGH 83 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCS--------EEECHHHHHHHHHTTCGGGGCSCCEESEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCce--------eEECHHHHHHHHHCCCHHHHHhccccccce
Confidence 578999999999999999999999999999997654311000 0000000 000000011110000000000
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
+.+..+...............++..+.+.+.+.+.+.+++ ++++++|++++.++ +.+++++.++++ .+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~~~a~~vV 159 (499)
T 2qa2_A 84 FGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAE--LLRGHTVRALTDEG-DHVVVEVEGPDG-PRSLTTRYVV 159 (499)
T ss_dssp ETTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCE--EEESCEEEEEEECS-SCEEEEEECSSC-EEEEEEEEEE
T ss_pred ecceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCC-cEEEEeCEEE
Confidence 0000000000000000001234578899999999888888 99999999999887 778888887654 4679999999
Q ss_pred EeeCCCCCcc
Q 018550 160 VCNGHFSVPR 169 (354)
Q Consensus 160 lAtG~~s~~~ 169 (354)
.|+|.+|..+
T Consensus 160 gADG~~S~VR 169 (499)
T 2qa2_A 160 GCDGGRSTVR 169 (499)
T ss_dssp ECCCTTCHHH
T ss_pred EccCcccHHH
Confidence 9999877544
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=8.3e-12 Score=104.33 Aligned_cols=125 Identities=15% Similarity=0.070 Sum_probs=82.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+++|..|++.|.+|+|||+.....| +..++... .. ....+.....
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G-~~~~~~~~-----~~---------~~~~~~~~~~------- 60 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM-MPFLPPKP-----PF---------PPGSLLERAY------- 60 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT-CCSSCCCS-----CC---------CTTCHHHHHC-------
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC-cccCcccc-----cc---------chhhHHhhhc-------
Confidence 47999999999999999999999999999999733223 22111100 00 0000000000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCc-EEEEEeecCCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~~d~vI 159 (354)
+ . .-|.+..+.+++.+.+++. +++ ++ +++|+++..++ +. +.+.+.++. ++.+|+||
T Consensus 61 d----~----------~g~~~~~~~~~l~~~~~~~~gv~--i~-~~~v~~i~~~~-~~v~~v~~~~g~----~i~a~~VV 118 (232)
T 2cul_A 61 D----P----------KDERVWAFHARAKYLLEGLRPLH--LF-QATATGLLLEG-NRVVGVRTWEGP----PARGEKVV 118 (232)
T ss_dssp C----T----------TCCCHHHHHHHHHHHHHTCTTEE--EE-ECCEEEEEEET-TEEEEEEETTSC----CEECSEEE
T ss_pred c----C----------CCCCHHHHHHHHHHHHHcCCCcE--EE-EeEEEEEEEeC-CEEEEEEECCCC----EEECCEEE
Confidence 0 0 0014478888999888886 777 66 57999998876 44 456666653 78999999
Q ss_pred EeeCCCCCccc
Q 018550 160 VCNGHFSVPRL 170 (354)
Q Consensus 160 lAtG~~s~~~~ 170 (354)
+|+|.++..+.
T Consensus 119 ~A~G~~s~~~~ 129 (232)
T 2cul_A 119 LAVGSFLGARL 129 (232)
T ss_dssp ECCTTCSSCEE
T ss_pred ECCCCChhhce
Confidence 99997655443
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-11 Score=114.50 Aligned_cols=155 Identities=18% Similarity=0.139 Sum_probs=92.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhc-------
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVN------- 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------- 72 (354)
.++|+|||||++|+++|..|+++|++|+|||+.+..+..-.. .++.+.. .+..-..++.+...
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~--------~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 76 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRA--------AGQNPRTMELLRIGGVADEVVRADDIRGTQ 76 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCS--------CCBCHHHHHHHHHTTCHHHHHHSCCSSCTT
T ss_pred cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCcc--------ceECHHHHHHHHHcCCHHHHHhhCCCcccc
Confidence 368999999999999999999999999999997654311100 0000000 00000000000000
Q ss_pred -----------cccccccc-cCCCCCccC-CCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC--
Q 018550 73 -----------LPRELMGF-QAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-- 137 (354)
Q Consensus 73 -----------~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-- 137 (354)
.......+ ..++..... ...........++..+.+.+.+.+.+.|++ ++++++|+++..++ +
T Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~-~~~ 153 (535)
T 3ihg_A 77 GDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGA--IRFGTRLLSFRQHD-DDA 153 (535)
T ss_dssp SCCEEEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEEC-GGG
T ss_pred cceeeeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECC-CCc
Confidence 00000000 000000000 000001122346688999999999988888 99999999999887 6
Q ss_pred --cEEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 138 --KWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 138 --~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.+++++.++.+ ..++.+|+||.|+|.+|.-
T Consensus 154 ~~~v~v~~~~~~~-~~~i~a~~vV~AdG~~S~v 185 (535)
T 3ihg_A 154 GAGVTARLAGPDG-EYDLRAGYLVGADGNRSLV 185 (535)
T ss_dssp CSEEEEEEEETTE-EEEEEEEEEEECCCTTCHH
T ss_pred cccEEEEEEcCCC-eEEEEeCEEEECCCCcchH
Confidence 78888887643 4689999999999987643
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-12 Score=117.55 Aligned_cols=151 Identities=17% Similarity=0.126 Sum_probs=88.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCC-cc-cccccccchhcc--ccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY-PV-HSSLYKSLRVNL--PRELM 78 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~ 78 (354)
+||+|||||++|+++|..|+++|++|+|+|+.+......-. ...|... .+ ....++.+.... .....
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~---------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 76 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGE---------SLLPRCMEHLDEAGFLDAVKAQGFQQKFGA 76 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCC---------BCCGGGHHHHHHTTCHHHHHHTTCEEECEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccC---------cccHhHHHHHHHcCChHHHHHcCCcccCCc
Confidence 79999999999999999999999999999997532100000 0000000 00 000011100000 00000
Q ss_pred cc------cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 79 GF------QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 79 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
.+ ..+++..... ..........+..+.+.+.+.+.+.|++ ++++++|+++..++ +.+.+.....++...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~L~~~a~~~gv~--i~~~~~v~~i~~~~-~~~~v~v~~~~g~~~~ 152 (421)
T 3nix_A 77 KFVRGKEIADFNFSDQFS-NGWNWTWQVPRGNFDKTLADEAARQGVD--VEYEVGVTDIKFFG-TDSVTTIEDINGNKRE 152 (421)
T ss_dssp EEEETTEEEEEETTSCSS-CSCCCEEECCHHHHHHHHHHHHHHHTCE--EECSEEEEEEEEET-TEEEEEEEETTSCEEE
T ss_pred EEEeCCeeEEEeehhhcC-CCCCceeEECHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCCCEEE
Confidence 00 0000100000 0001111256689999999999888998 99999999999876 6666665544444457
Q ss_pred EEeCEEEEeeCCCC
Q 018550 153 ETFDAVVVCNGHFS 166 (354)
Q Consensus 153 ~~~d~vIlAtG~~s 166 (354)
+.+|.||+|+|.++
T Consensus 153 ~~a~~vV~A~G~~s 166 (421)
T 3nix_A 153 IEARFIIDASGYGR 166 (421)
T ss_dssp EEEEEEEECCGGGC
T ss_pred EEcCEEEECCCCch
Confidence 99999999999655
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8e-12 Score=116.20 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=87.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+++|..|++.|++|+|||+.+.+|+.... .+.| .....+....... ...
T Consensus 92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~---------~~~~-------~~~~~l~~~g~~~--~~~ 153 (497)
T 2bry_A 92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVL---------HLWP-------FTIHDLRALGAKK--FYG 153 (497)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEE---------ECCH-------HHHHHHHTTTHHH--HCT
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcc---------cCCh-------hHHHHHHHcCCcc--ccc
Confidence 478999999999999999999999999999998766532111 0000 0000000000000 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeC--CCcEEEEEeec-CCceEEEEeCEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKK-DDVVEEETFDAV 158 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~~v~~~~g-~~~~~~~~~d~v 158 (354)
.+.. ......+..++.+.+.+.+.+.+++ ++++++|+++..++ ++.+.+++.+. ++...++.+|+|
T Consensus 154 ~~~~---------~~~~~~~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~V 222 (497)
T 2bry_A 154 RFCT---------GTLDHISIRQLQLLLLKVALLLGVE--IHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVL 222 (497)
T ss_dssp TTTC---------TTCCEEEHHHHHHHHHHHHHHTTCE--EEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEE
T ss_pred cccc---------cccccCCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEE
Confidence 0000 0001123478888898888888888 99999999998742 25678877432 221236899999
Q ss_pred EEeeCCCCCcc
Q 018550 159 VVCNGHFSVPR 169 (354)
Q Consensus 159 IlAtG~~s~~~ 169 (354)
|+|+|..+..+
T Consensus 223 V~A~G~~S~~r 233 (497)
T 2bry_A 223 ISAAGGKFVPE 233 (497)
T ss_dssp EECCCTTCCCT
T ss_pred EECCCCCcccc
Confidence 99999665544
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-12 Score=119.25 Aligned_cols=156 Identities=19% Similarity=0.084 Sum_probs=89.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhcccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (354)
.++|+|||||++|+++|..|+++|++|+|||+.+........ .++.+.. .+.....++.+..........
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~--------~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~ 120 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRA--------GALHIRTVETLDLRGLLDRFLEGTQVAKGL 120 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSC--------CCBCHHHHHHHHTTTCHHHHTTSCCBCSBC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceE--------EEECHHHHHHHHHcCChHHHHhcCcccCCc
Confidence 468999999999999999999999999999997654211000 0000000 000000111110000000000
Q ss_pred -ccCC---CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEe
Q 018550 80 -FQAY---PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF 155 (354)
Q Consensus 80 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~ 155 (354)
+... .+................+..+.+.+.+.+.+.+++ ++++++|++++.++ +.+++++.+.++ ..++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~l~~~~-~~v~v~~~~~~G-~~~~~a 196 (570)
T 3fmw_A 121 PFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAE--IPRGHEVTRLRQDA-EAVEVTVAGPSG-PYPVRA 196 (570)
T ss_dssp CBTTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEE--CCBSCEEEECCBCS-SCEEEEEEETTE-EEEEEE
T ss_pred eeCCcccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CeEEEEEEeCCC-cEEEEe
Confidence 0000 000000000001112356688999999999888888 89999999999877 778888753222 148999
Q ss_pred CEEEEeeCCCCCcc
Q 018550 156 DAVVVCNGHFSVPR 169 (354)
Q Consensus 156 d~vIlAtG~~s~~~ 169 (354)
|+||.|+|.+|..+
T Consensus 197 ~~vV~ADG~~S~vR 210 (570)
T 3fmw_A 197 RYGVGCDGGRSTVR 210 (570)
T ss_dssp SEEEECSCSSCHHH
T ss_pred CEEEEcCCCCchHH
Confidence 99999999776443
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-12 Score=111.84 Aligned_cols=154 Identities=17% Similarity=0.271 Sum_probs=85.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHH---cCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcc--cccccccchh---cc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR---EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV--HSSLYKSLRV---NL 73 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~---~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~ 73 (354)
+++|+|||||++|+++|+.|++ .|++|+||||++.+||.+............+......+ .......+.. ..
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~ 80 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL 80 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH
Confidence 3689999999999999999999 99999999999888887654211000000000000000 0000000000 00
Q ss_pred -ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE
Q 018550 74 -PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE 152 (354)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~ 152 (354)
.... ...+...............|.....+..+.+..++..+.+ ++++++|++|.+++ ++|+|++.+|. .
T Consensus 81 ~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~--i~~~~~V~~i~~~~-~~~~v~~~~g~----~ 151 (342)
T 3qj4_A 81 LAYGV--LRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAE--VYFRHRVTQINLRD-DKWEVSKQTGS----P 151 (342)
T ss_dssp HHTTS--CEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCE--EESSCCEEEEEECS-SSEEEEESSSC----C
T ss_pred HhCCC--eecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCE--EEeCCEEEEEEEcC-CEEEEEECCCC----E
Confidence 0000 0000000000000000111211233344555555666877 99999999999977 78999988764 5
Q ss_pred EEeCEEEEeeCC
Q 018550 153 ETFDAVVVCNGH 164 (354)
Q Consensus 153 ~~~d~vIlAtG~ 164 (354)
+.+|.||+|+..
T Consensus 152 ~~ad~vV~A~p~ 163 (342)
T 3qj4_A 152 EQFDLIVLTMPV 163 (342)
T ss_dssp EEESEEEECSCH
T ss_pred EEcCEEEECCCH
Confidence 799999999984
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.3e-12 Score=116.82 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=88.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc-------ceeecCCCCCCCC--CCCCCCCCcccccccccchh-
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-------GSWIYTSETESDP--LGVDPNRYPVHSSLYKSLRV- 71 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g-------g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~- 71 (354)
.++|+|||||++|+++|..|++.|++|+|+|+++.++ +.|......+... .+......+.+..++..+..
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 4789999999999999999999999999999987653 2333211000000 00000000000011110000
Q ss_pred -cccccccc-ccCCCCCccCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 72 -NLPRELMG-FQAYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 72 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
..+..... +..+..+.... ....... ....+.+.+.+.+.+.|++ ++++++|+++..+++..+.+++.++
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~---~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~--I~~~t~V~~I~~~~~~v~gV~l~~G 261 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEIL---YVSKPHIGTFKLVTMIEKMRATIIELGGE--IRFSTRVDDLHMEDGQITGVTLSNG 261 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGG---TBSSCCCCHHHHHHHHHHHHHHHHHTTCE--EESSCCEEEEEESSSBEEEEEETTS
T ss_pred cccHHHHHHHHHHcCCCceEe---eccccccccchHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEEeCCEEEEEEECCC
Confidence 00000000 00111100000 0000111 1256778888888888998 9999999999987633455777776
Q ss_pred CCceEEEEeCEEEEeeCCCC
Q 018550 147 DDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 147 ~~~~~~~~~d~vIlAtG~~s 166 (354)
. ++.+|.||+|+|.++
T Consensus 262 ~----~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 262 E----EIKSRHVVLAVGHSA 277 (549)
T ss_dssp C----EEECSCEEECCCTTC
T ss_pred C----EEECCEEEECCCCCh
Confidence 4 799999999999766
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.3e-12 Score=113.47 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=87.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccc---eeecCCCCC--CCCCCCCCCCCcccccccccchhc-ccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN-LPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 75 (354)
+++|+|||||++|+++|..|+++|++|+|+|+.+.+.. .+...+... ...++ .++.+... .+.
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg-----------~~~~~~~~~~~~ 91 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLG-----------MGDIMETFGGPL 91 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTT-----------CHHHHHHHSCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCC-----------CHHHHHhhcCCC
Confidence 47999999999999999999999999999999765421 111100000 00000 01100000 000
Q ss_pred ccccccC---------CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 76 ELMGFQA---------YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 76 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
..+.+.+ ++..... ...........+..+.+.+.+.+.+ .+ ++++++|++++.++ +.+++++.+|
T Consensus 92 ~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~--~~--i~~~~~v~~i~~~~-~~v~v~~~~g 165 (407)
T 3rp8_A 92 RRMAYRDFRSGENMTQFSLAPLI-ERTGSRPCPVSRAELQREMLDYWGR--DS--VQFGKRVTRCEEDA-DGVTVWFTDG 165 (407)
T ss_dssp CEEEEEETTTCCEEEEEECHHHH-HHHSSCCEEEEHHHHHHHHHHHHCG--GG--EEESCCEEEEEEET-TEEEEEETTS
T ss_pred cceEEEECCCCCEeEEecchhhh-hhcCCceEEEEHHHHHHHHHHhCCc--CE--EEECCEEEEEEecC-CcEEEEEcCC
Confidence 0000000 0000000 0000011123457788888887765 55 89999999999987 7888888877
Q ss_pred CCceEEEEeCEEEEeeCCCCCccc
Q 018550 147 DDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 147 ~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
. ++.+|+||.|+|.+|..+.
T Consensus 166 ~----~~~a~~vV~AdG~~S~vr~ 185 (407)
T 3rp8_A 166 S----SASGDLLIAADGSHSALRP 185 (407)
T ss_dssp C----EEEESEEEECCCTTCSSHH
T ss_pred C----EEeeCEEEECCCcChHHHH
Confidence 5 8999999999998776553
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=111.51 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=84.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc----cceeecCCCCC--CCCCCCCCCCCcccccccccchhcccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~----gg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (354)
+++|+|||||++|+++|..|++.|++|+|+|+.+.. |+.+...+... ...+++.+. ....+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~------------~~~~~~ 72 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELD------------SISVPS 72 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGG------------GTCBCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccc------------cccccc
Confidence 479999999999999999999999999999997643 11111100000 000011100 000000
Q ss_pred ccccccCC-CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 76 ELMGFQAY-PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 76 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
..+.+.+. ..... ........+..+..+.+.+.+.+ .+++ ++++++|+++..++ +.+++++.+|. ++.
T Consensus 73 ~~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~ 141 (397)
T 2vou_A 73 SSMEYVDALTGERV--GSVPADWRFTSYDSIYGGLYELF--GPER--YHTSKCLVGLSQDS-ETVQMRFSDGT----KAE 141 (397)
T ss_dssp CEEEEEETTTCCEE--EEEECCCCEEEHHHHHHHHHHHH--CSTT--EETTCCEEEEEECS-SCEEEEETTSC----EEE
T ss_pred cceEEEecCCCCcc--ccccCcccccCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecC-CEEEEEECCCC----EEE
Confidence 00000000 00000 00000111234466667666654 3677 99999999999877 77888887764 799
Q ss_pred eCEEEEeeCCCCCcc
Q 018550 155 FDAVVVCNGHFSVPR 169 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~ 169 (354)
+|+||.|+|.+|..+
T Consensus 142 ad~vV~AdG~~S~vr 156 (397)
T 2vou_A 142 ANWVIGADGGASVVR 156 (397)
T ss_dssp ESEEEECCCTTCHHH
T ss_pred CCEEEECCCcchhHH
Confidence 999999999776543
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=115.26 Aligned_cols=185 Identities=14% Similarity=0.094 Sum_probs=108.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC-CccceeecCCCCCCCCCCCCCCCCccc-ccccccchhcc------
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLRVNL------ 73 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------ 73 (354)
.+||+|||||+||++||..|++.|.+|+|+|+.. .+|. .+|.|...... ......+....
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~------------~~Cnps~GGia~g~lv~eldalgg~~~~~ 94 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ------------MSCNPAIGGIAKGIVVREIDALGGEMGKA 94 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC------------CCSCSEEECTTHHHHHHHHHHHTCSHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC------------cCccccccccchHHHHHHHHHhhhHHHHH
Confidence 3799999999999999999999999999999863 3331 12333211110 00111110000
Q ss_pred -ccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceE
Q 018550 74 -PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (354)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~ 151 (354)
......+..+....... ........++..+.+.+.+.+.+ .+++ + ++++|+++..+++..+.|.+.+|.
T Consensus 95 ~d~~gi~f~~l~~~kGpa--v~~~r~~~Dr~~~~~~L~~~Le~~~GVe--I-~~~~Vt~L~~e~g~V~GV~t~dG~---- 165 (637)
T 2zxi_A 95 IDQTGIQFKMLNTRKGKA--VQSPRAQADKKRYREYMKKVCENQENLY--I-KQEEVVDIIVKNNQVVGVRTNLGV---- 165 (637)
T ss_dssp HHHHEEEEEEESTTSCGG--GCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EESCEEEEEESSSBEEEEEETTSC----
T ss_pred hhhcccceeecccccCcc--ccchhhhCCHHHHHHHHHHHHHhCCCCE--E-EEeEEEEEEecCCEEEEEEECCCc----
Confidence 00000010000000000 00000112446788888888877 4777 6 578999998766233457776664
Q ss_pred EEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 152 ~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.+.++.||+||| ..+..+.++|...+ . +.+ .|+.++.+++..|.+.|.++..+.+.
T Consensus 166 ~i~AdaVVLATG--~~s~~~~~~G~~~~-----~-----------~Gr----~G~~~A~~la~~L~~lG~~v~~l~tg 221 (637)
T 2zxi_A 166 EYKTKAVVVTTG--TFLNGVIYIGDKMI-----P-----------GGR----LGEPRSEGLSDFYRRFDFPLIRFKTG 221 (637)
T ss_dssp EEECSEEEECCT--TCBTCEEEETTEEE-----E-----------CSB----TTBCCBCTHHHHHHHTTCCCEEEEEE
T ss_pred EEEeCEEEEccC--CCccCceeccceec-----C-----------CCC----CCchhHHHHHHHHHhcCCceEEecCC
Confidence 899999999999 44444445554321 0 111 24678999999999999888777653
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=5.3e-11 Score=107.64 Aligned_cols=152 Identities=19% Similarity=0.229 Sum_probs=87.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc------cceeecCCCCC-CCCCCCCCCCCcccccccccchhc-
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVN- 72 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~------gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 72 (354)
|+++|+|||||++|+++|..|++.|++|+|+|+.+.. ++......... ...++ .++.+...
T Consensus 1 m~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg-----------~~~~~~~~~ 69 (394)
T 1k0i_A 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAG-----------VDRRMARDG 69 (394)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTT-----------CCHHHHHHC
T ss_pred CCccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcC-----------CcHHHHhcC
Confidence 6789999999999999999999999999999997532 11100000000 00001 11111000
Q ss_pred ccccccccc------CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEE-ee
Q 018550 73 LPRELMGFQ------AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS-RK 145 (354)
Q Consensus 73 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~-~~ 145 (354)
.+...+.+. .+.+... . .........+..+.+.+.+.+.+.+++ ++++++|+++..++++.+.+++ .+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~L~~~~~~~g~~--i~~~~~v~~i~~~~~~~~~v~~~~~ 144 (394)
T 1k0i_A 70 LVHEGVEIAFAGQRRRIDLKRL--S-GGKTVTVYGQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQGERPYVTFERD 144 (394)
T ss_dssp EEESCEEEEETTEEEEECHHHH--H-TSCCEEECCHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTTSSSCEEEEEET
T ss_pred CccceEEEEECCceEEeccccc--c-CCCceEEechHHHHHHHHHHHHhcCCe--EEeceeEEEEEEecCCceEEEEecC
Confidence 000000000 0000000 0 000001123467778888888777888 9999999999875435677877 44
Q ss_pred cCCceEEEEeCEEEEeeCCCCCccc
Q 018550 146 KDDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 146 g~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
| ...++.+|+||.|+|.+|..+.
T Consensus 145 g--~~~~~~a~~vV~AdG~~S~vr~ 167 (394)
T 1k0i_A 145 G--ERLRLDCDYIAGCDGFHGISRQ 167 (394)
T ss_dssp T--EEEEEECSEEEECCCTTCSTGG
T ss_pred C--cEEEEEeCEEEECCCCCcHHHH
Confidence 3 2246899999999998776554
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-11 Score=113.83 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=88.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Cccc-ccccccchhc-cccc--
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVH-SSLYKSLRVN-LPRE-- 76 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~-~~~~-- 76 (354)
++|+|||||++|+++|..|+++|++|+|||+.+........ .+.|.. .++. ...++.+... .+..
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~---------~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~ 78 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGE---------SLLPATVHGICAMLGLTDEMKRAGFPIKRG 78 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCC---------BCCHHHHTTHHHHTTCHHHHHTTTCCEECE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCc---------ccCcchHHHHHHHhCcHHHHHHcCCccccC
Confidence 68999999999999999999999999999997522100000 000000 0000 0001110000 0000
Q ss_pred -cccccC------CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcE-EEEEeecCC
Q 018550 77 -LMGFQA------YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDD 148 (354)
Q Consensus 77 -~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g~~ 148 (354)
.+.+.. +.+.... ...........+..+.+.+.+.+.+.|++ ++++++|+++..++ +.. .+.+...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~~~~V~~v~~~~-~~v~gv~~~~~dG 154 (512)
T 3e1t_A 79 GTFRWGKEPEPWTFGFTRHP-DDPYGFAYQVERARFDDMLLRNSERKGVD--VRERHEVIDVLFEG-ERAVGVRYRNTEG 154 (512)
T ss_dssp EEEECSSCSSCEEEESSSSS-SSTTCCEEBCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEET-TEEEEEEEECSSS
T ss_pred ceEEecCCccccccccccCC-CCCcceeeEecHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEEC-CEEEEEEEEeCCC
Confidence 000000 0000000 00000111256788999999999888988 99999999999876 433 244444333
Q ss_pred ceEEEEeCEEEEeeCCCCCccc
Q 018550 149 VVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
...++.+|.||.|+|.++..+.
T Consensus 155 ~~~~i~ad~VI~AdG~~S~vr~ 176 (512)
T 3e1t_A 155 VELMAHARFIVDASGNRTRVSQ 176 (512)
T ss_dssp CEEEEEEEEEEECCCTTCSSGG
T ss_pred CEEEEEcCEEEECCCcchHHHH
Confidence 3458999999999997665443
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-11 Score=107.49 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
..+.+.+.+.+.+.|++ ++.+++|+++..++ +.+.+.+.++ ++.+|.||+|+|.|+....+
T Consensus 149 ~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~-~~~~v~~~~g-----~~~a~~vV~a~G~~s~~l~~ 209 (372)
T 2uzz_A 149 ELAIKTWIQLAKEAGCA--QLFNCPVTAIRHDD-DGVTIETADG-----EYQAKKAIVCAGTWVKDLLP 209 (372)
T ss_dssp HHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SSEEEEESSC-----EEEEEEEEECCGGGGGGTST
T ss_pred HHHHHHHHHHHHHCCCE--EEcCCEEEEEEEcC-CEEEEEECCC-----eEEcCEEEEcCCccHHhhcc
Confidence 57888888888888988 89999999999876 6688776654 58999999999987654433
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-11 Score=107.88 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
....+.+.+.+.+.+.|++ ++++++|+++..++++.+.+.+.+++ ..++.+|.||+|+|.|+..
T Consensus 148 ~~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~a~~VV~A~G~~s~~ 211 (369)
T 3dme_A 148 DSHALMLAYQGDAESDGAQ--LVFHTPLIAGRVRPEGGFELDFGGAE--PMTLSCRVLINAAGLHAPG 211 (369)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTSSEEEEECTTS--CEEEEEEEEEECCGGGHHH
T ss_pred CHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCceEEEEECCCc--eeEEEeCEEEECCCcchHH
Confidence 3467888888888889998 99999999999876344888877653 2479999999999987543
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=7.3e-11 Score=106.14 Aligned_cols=146 Identities=21% Similarity=0.155 Sum_probs=84.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccce---eecCCCCC--CCCCCCCCCCCcccccccccchhcccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
++|+|||||++|+++|..|+++|++|+|+|+.+.++.. ....+... ...+++.... .........+..... .
T Consensus 12 ~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~--g 88 (379)
T 3alj_A 12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDV-LQGSHTPPTYETWMH--N 88 (379)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHH-HTTCBCCSCEEEEET--T
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHH-HhhCCCccceEEEeC--C
Confidence 68999999999999999999999999999997655321 10000000 0000000000 000000000000000 0
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
..+..++.. ........+..+.+.+.+.+.+.|++ ++++++|++++. + + .+++.+|. ++.+|+
T Consensus 89 ~~~~~~~~~-------~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~-~-~--~v~~~~g~----~~~ad~ 151 (379)
T 3alj_A 89 KSVSKETFN-------GLPWRIMTRSHLHDALVNRARALGVD--ISVNSEAVAADP-V-G--RLTLQTGE----VLEADL 151 (379)
T ss_dssp EEEEEECGG-------GCCEEEEEHHHHHHHHHHHHHHTTCE--EESSCCEEEEET-T-T--EEEETTSC----EEECSE
T ss_pred ceeeeccCC-------CCceEEECHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEe-C-C--EEEECCCC----EEEcCE
Confidence 000000000 00112235588899999999888888 999999999986 3 4 77777654 799999
Q ss_pred EEEeeCCCCCc
Q 018550 158 VVVCNGHFSVP 168 (354)
Q Consensus 158 vIlAtG~~s~~ 168 (354)
||+|+|.++..
T Consensus 152 vV~AdG~~s~v 162 (379)
T 3alj_A 152 IVGADGVGSKV 162 (379)
T ss_dssp EEECCCTTCHH
T ss_pred EEECCCccHHH
Confidence 99999976543
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-11 Score=108.50 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=87.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhc-ccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVN-LPRELMG 79 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~ 79 (354)
++|+|||||++|+++|..|+++|++|+|+|+.+.+... +.. ..+.|.. .+..-..++.+... .+...+.
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~----~~~----~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 78 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAI----NGA----DLLKPAGIRVVEAAGLLAEVTRRGGRVRHEL 78 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC-------CCC----CEECHHHHHHHHHTTCHHHHHHTTCEEECEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCcc----Cce----eeECchHHHHHHHcCcHHHHHHhCCCcceeE
Confidence 68999999999999999999999999999997644100 000 0000000 00000001111000 0000000
Q ss_pred --------ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcE--EEEEeecCC
Q 018550 80 --------FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKW--KVKSRKKDD 148 (354)
Q Consensus 80 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~--~v~~~~g~~ 148 (354)
...++.... . .........+..+.+.+.+.+.+. +++ ++++++|++++.++ +.+ .+++.+|.
T Consensus 79 ~~~~~g~~~~~~~~~~~--~-~~~~~~~~~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~g~v~~~~g~- 151 (399)
T 2x3n_A 79 EVYHDGELLRYFNYSSV--D-ARGYFILMPCESLRRLVLEKIDGEATVE--MLFETRIEAVQRDE-RHAIDQVRLNDGR- 151 (399)
T ss_dssp EEEETTEEEEEEETTSS--C-GGGCEEECCHHHHHHHHHHHHTTCTTEE--EECSCCEEEEEECT-TSCEEEEEETTSC-
T ss_pred EEeCCCCEEEecchHHh--c-ccCccccccHHHHHHHHHHHhhhcCCcE--EEcCCEEEEEEEcC-CceEEEEEECCCC-
Confidence 000000000 0 000011245688899999888877 777 99999999999877 677 78887764
Q ss_pred ceEEEEeCEEEEeeCCCCCc
Q 018550 149 VVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~ 168 (354)
++.+|.||+|+|.+|..
T Consensus 152 ---~~~ad~vV~AdG~~s~v 168 (399)
T 2x3n_A 152 ---VLRPRVVVGADGIASYV 168 (399)
T ss_dssp ---EEEEEEEEECCCTTCHH
T ss_pred ---EEECCEEEECCCCChHH
Confidence 78999999999976653
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.1e-11 Score=106.96 Aligned_cols=148 Identities=20% Similarity=0.230 Sum_probs=86.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc-----ceeecCCCCCCCCCCCCCCCCcccccccccchhcc-cc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----GSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL-PR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 75 (354)
.++|+|||||++|+++|..|++.|++|+|||+.+.++ +.+...+... ...+.....++.+.... +.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~--------~~~l~~~gl~~~~~~~~~~~ 97 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSG--------QEAMKKAGLLQTYYDLALPM 97 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTH--------HHHHHHTTCHHHHHHHCBCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccH--------HHHHHhcChHHHHHHhhccc
Confidence 3689999999999999999999999999999976542 2222211000 00000000111111000 00
Q ss_pred --ccc-----cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 76 --ELM-----GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 76 --~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
..+ .+.....+.. .........+..+.+++.+.+. +.. ++++++|++++.++ +.+++++.+|.
T Consensus 98 ~~~~~~~~g~~~~~~~~~~~----~~~~~~~i~r~~l~~~L~~~~~--~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~- 167 (398)
T 2xdo_A 98 GVNIADEKGNILSTKNVKPE----NRFDNPEINRNDLRAILLNSLE--NDT--VIWDRKLVMLEPGK-KKWTLTFENKP- 167 (398)
T ss_dssp CEEEECSSSEEEEECCCGGG----TTSSCCEECHHHHHHHHHHTSC--TTS--EEESCCEEEEEECS-SSEEEEETTSC-
T ss_pred ceEEECCCCCchhhcccccc----CCCCCceECHHHHHHHHHhhcC--CCE--EEECCEEEEEEECC-CEEEEEECCCc-
Confidence 000 0000000000 0001112355677777766553 245 89999999999877 77889887764
Q ss_pred ceEEEEeCEEEEeeCCCCCccc
Q 018550 149 VVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
++.+|+||.|+|.+|..+.
T Consensus 168 ---~~~ad~vV~AdG~~S~vR~ 186 (398)
T 2xdo_A 168 ---SETADLVILANGGMSKVRK 186 (398)
T ss_dssp ---CEEESEEEECSCTTCSCCT
T ss_pred ---EEecCEEEECCCcchhHHh
Confidence 7899999999998776554
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-11 Score=113.31 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=87.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc--ceeecCCCCC---CCCCCCCCCC-Ccccccccccchhcccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--GSWIYTSETE---SDPLGVDPNR-YPVHSSLYKSLRVNLPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g--g~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 75 (354)
+++|+|||||++|+++|..|+++|++|+|+|+.+.+. ..+.- .... ...++..... ... ...+.......+.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g-~~l~~~~l~~lg~~~~~~~~~-~~~~~~~~~~~~~ 83 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCG-DAVSKAHFDKLGMPYPKGEEL-ENKINGIKLYSPD 83 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCC-CEEEHHHHHHTTCCCCCGGGE-EEEEEEEEEECTT
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCccccc-ccccHHHHHHhcCCCCchHHH-HhhhcceEEECCC
Confidence 4799999999999999999999999999999976431 11000 0000 0000000000 000 0000000000000
Q ss_pred ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEE-EEEeec-CCceEEE
Q 018550 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKK-DDVVEEE 153 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g-~~~~~~~ 153 (354)
.... +++. .......+..+.+.+.+.+.+.|++ ++++++|+++..++ +.+. +++.+. ++...++
T Consensus 84 ~~~~---~~~~--------~~~~~i~r~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~-~~v~gv~~~~~~~G~~~~~ 149 (453)
T 3atr_A 84 MQTV---WTVN--------GEGFELNAPLYNQRVLKEAQDRGVE--IWDLTTAMKPIFED-GYVKGAVLFNRRTNEELTV 149 (453)
T ss_dssp SSCE---EEEE--------EEEEEECHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEET-TEEEEEEEEETTTTEEEEE
T ss_pred CceE---EeEC--------CCcEEEcHHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEEC-CEEEEEEEEEcCCCceEEE
Confidence 0000 0000 0001235578899999998888888 99999999999876 5543 555532 3333579
Q ss_pred EeCEEEEeeCCCCCcc
Q 018550 154 TFDAVVVCNGHFSVPR 169 (354)
Q Consensus 154 ~~d~vIlAtG~~s~~~ 169 (354)
.+|.||+|+|.++..+
T Consensus 150 ~ad~VV~AdG~~s~vr 165 (453)
T 3atr_A 150 YSKVVVEATGYSRSFR 165 (453)
T ss_dssp ECSEEEECCGGGCTTG
T ss_pred EcCEEEECcCCchhhH
Confidence 9999999999766543
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-10 Score=109.25 Aligned_cols=158 Identities=17% Similarity=0.218 Sum_probs=88.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc------CCcEEEEeeCCCccceeecCCCCCCCCCC---CCCC----CCccccccc-c
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETESDPLG---VDPN----RYPVHSSLY-K 67 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~------g~~v~lie~~~~~gg~~~~~~~~~~~~~~---~~~~----~~~~~~~~~-~ 67 (354)
.+||+|||||++|+++|..|+++ |++|+||||.+.+|+.......+ .+.. +.+. ......... .
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l--~~~~l~~ll~~~~~~g~~~~~~~~~~ 112 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACL--DPRAFEELFPDWKEKGAPLNTPVTED 112 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEE--CTHHHHHHCTTHHHHTCCCCEECCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCcccccccc--CHHHHHHHHHHHHhcCCceeeeechh
Confidence 47899999999999999999999 99999999987766432111000 0000 0000 000000000 0
Q ss_pred cchhccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEE-EEEee-
Q 018550 68 SLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRK- 145 (354)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~- 145 (354)
.+.......... ++.... ............+..+.+++.+.+.+.|++ ++++++|+++..++++... |.+.+
T Consensus 113 ~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~g~~v~~l~~~~~g~V~gV~~~~~ 186 (584)
T 2gmh_A 113 RFGILTEKYRIP---VPILPG-LPMNNHGNYVVRLGHLVSWMGEQAEALGVE--VYPGYAAAEILFHEDGSVKGIATNDV 186 (584)
T ss_dssp EEEEECSSCEEE---CCCCTT-STTCCTTCEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEEECTTSSEEEEEECCE
T ss_pred heeeeccCCCcc---ccccCc-cccccCCCEEEeHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCCCEEEEEeCCc
Confidence 000000000000 110000 000001112246688999999999988998 9999999999987634333 66552
Q ss_pred ---cCCc-------eEEEEeCEEEEeeCCCCC
Q 018550 146 ---KDDV-------VEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 146 ---g~~~-------~~~~~~d~vIlAtG~~s~ 167 (354)
.++. ..++.+|+||+|+|.++.
T Consensus 187 g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 187 GIQKDGAPKTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp EECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred cccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence 1111 137999999999997664
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=110.48 Aligned_cols=164 Identities=18% Similarity=0.160 Sum_probs=91.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCC-------CCCC--CCCC----------ccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVD--PNRY----------PVH 62 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~-------~~~~--~~~~----------~~~ 62 (354)
.+||+|||||++|+++|..|+++|.+|+|+||.+.+|+......+..+.. .+.. ++.. ...
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND 205 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 36899999999999999999999999999999988876655433211000 0000 0000 000
Q ss_pred ccccccchhccccccccc--cCCCCCcc-CCCCCCCCC------CCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEE
Q 018550 63 SSLYKSLRVNLPRELMGF--QAYPFVAR-NYEGSVDLR------RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133 (354)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~ 133 (354)
......+....+.....+ .+.++... ......... .......+.+.+.+.+.+.+++ ++++++|+++..
T Consensus 206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~ 283 (571)
T 1y0p_A 206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNID--LRMNTRGIEVLK 283 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEE
T ss_pred HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCE--EEeCCEeeEeEE
Confidence 000000000000000000 01111100 000000000 0122467888899999888998 999999999998
Q ss_pred eCCC-cEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 134 VESN-KWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 134 ~~~~-~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
++++ .+.+...+.++....+.+|.||+|||.++.
T Consensus 284 ~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~ 318 (571)
T 1y0p_A 284 DDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK 318 (571)
T ss_dssp CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence 6523 233555542333457899999999997654
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-11 Score=112.32 Aligned_cols=163 Identities=18% Similarity=0.222 Sum_probs=91.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCC-------CCCCCC--CC----------cccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPN--RY----------PVHS 63 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~-------~~~~~~--~~----------~~~~ 63 (354)
+||+|||||++|+++|..|+++|.+|+|||+.+.+|+......+..+.. .+.... .. ....
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~ 201 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI 201 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 5899999999999999999999999999999887776544432211100 000000 00 0000
Q ss_pred cccccchhccccccccc--cCCCCCcc-CCCCCCC------CCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 64 SLYKSLRVNLPRELMGF--QAYPFVAR-NYEGSVD------LRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 64 ~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
.....+....+.....+ .+.++... ....... .........+.+.+.+.+.+.+++ ++++++|+++..+
T Consensus 202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~~ 279 (566)
T 1qo8_A 202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGID--TRLNSRVVKLVVN 279 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCC--EECSEEEEEEEEC
T ss_pred HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEEC
Confidence 00000000000000000 01111100 0000000 001123567888999999889998 9999999999876
Q ss_pred C-CCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 135 E-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 135 ~-~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+ +..+.+...+.++....+.+|.||+|||.++.
T Consensus 280 ~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 280 DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp TTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred CCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 5 22234555533333457899999999998765
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=108.42 Aligned_cols=153 Identities=22% Similarity=0.233 Sum_probs=88.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCC--cccccccccchhcc-c---c
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY--PVHSSLYKSLRVNL-P---R 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~---~ 75 (354)
.++|+|||||++|+++|..|+++|++|+|+|+.+......-. ++.|... +..-..++.+.... . .
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~---------~l~p~~~~~l~~lGl~~~l~~~~~~~~~~ 93 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGE---------SLLPGTMSILNRLGLQEKIDAQNYVKKPS 93 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCC---------BCCHHHHHHHHHTTCHHHHHHHCCEEECE
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceee---------eECHHHHHHHHHcCCcHHHHhcCCcccCC
Confidence 379999999999999999999999999999997433211000 0000000 00000000000000 0 0
Q ss_pred cccccc------CCCCCccCCCC-CCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCC
Q 018550 76 ELMGFQ------AYPFVARNYEG-SVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD 148 (354)
Q Consensus 76 ~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~ 148 (354)
..+.+. .+.+....... .........+..+.+.+.+.+.+.|++ ++++++|+++..++++.+.|++.+ ++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~g~~V~~v~~~~g~~~~V~~~~-~G 170 (591)
T 3i3l_A 94 ATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGIT--VHEETPVTDVDLSDPDRVVLTVRR-GG 170 (591)
T ss_dssp EEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEECCSTTCEEEEEEE-TT
T ss_pred cEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCEEEEEEec-CC
Confidence 000000 00000000000 000011245688999999999888998 999999999997643678888874 22
Q ss_pred ceEEEEeCEEEEeeCCCC
Q 018550 149 VVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s 166 (354)
...++.+|.||.|+|.++
T Consensus 171 ~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 171 ESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp EEEEEEESEEEECCGGGC
T ss_pred ceEEEEcCEEEECCCCcc
Confidence 235899999999999755
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=9.5e-12 Score=99.70 Aligned_cols=107 Identities=19% Similarity=0.123 Sum_probs=74.1
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCCcc------------------------ccccCCCCC-CeEEecceeEE
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE------------------------THEKQPGYD-NMWLHSMVERA 253 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~------------------------~~~~l~~~~-~~~~~~~v~~v 253 (354)
+++|||+|++|+++|..|++.|.+|+++.+.+... ..+.+++.+ +++.+ .|+++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 68999999999999999999999999999875200 011112333 77888 89988
Q ss_pred ecCCc---EEEccCcEEecCEEEEcccCCCccCcc---cccC-------chhhhhceeeeecccchh
Q 018550 254 NEDGT---VVFRNGRVVSADVIMHCTGLTGTSTTT---LFLK-------PMALLLWMTIVLGHCTST 307 (354)
Q Consensus 254 ~~~~~---v~~~~g~~~~~D~vi~a~G~~~~~p~~---~~l~-------~~~~~~~~i~a~GD~~~~ 307 (354)
+.++. +.+++| ++++|.||+|+|..++.+.. ++-. .......+|||+|||+..
T Consensus 82 ~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~ 147 (180)
T 2ywl_A 82 RDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGK 147 (180)
T ss_dssp EECSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTC
T ss_pred EEcCCEEEEEECCC-EEEECEEEECCCCCCCccccCCCCccCceEEeCCCCCcCCCCEEEeecccCc
Confidence 75432 666677 89999999999999432111 1100 001123469999999974
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-10 Score=98.02 Aligned_cols=139 Identities=16% Similarity=0.031 Sum_probs=81.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.+||+|||||++|+++|..|+++ |.+|+|+|+.+.+|+.+...+. ..............+. -
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~--------~~~~~~~~~~~~~~l~---------~ 101 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQ--------LFSAMIVRKPAHLFLD---------E 101 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCST--------TCCCEEEETTTHHHHH---------H
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCc--------chHHHHcCcHHHHHHH---------H
Confidence 36899999999999999999997 9999999998877654322111 1000000000000000 0
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCc-EEEEEee---------c-CC
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNK-WKVKSRK---------K-DD 148 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~---------g-~~ 148 (354)
.+.++... ...........+...+.+.+.+ .+++ ++++++|+++..++ +. ..+.+.. + .+
T Consensus 102 ~G~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~gv~--i~~~~~V~~i~~~~-~~v~gv~~~~~~~~~~~~~g~~g 173 (284)
T 1rp0_A 102 IGVAYDEQ-----DTYVVVKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQSCM 173 (284)
T ss_dssp HTCCCEEC-----SSEEEESCHHHHHHHHHHHHHTSTTEE--EEETEEEEEEEEET-TEEEEEEEEEHHHHTCTTTSSCC
T ss_pred cCCCcccC-----CCEEEecCHHHHHHHHHHHHHhcCCCE--EEcCcEEEEEEecC-CeEEEEEEeccccccccCccccC
Confidence 01111110 0000001235666666666654 5777 99999999999876 43 2344431 1 01
Q ss_pred ceEEEEeCEEEEeeCCC
Q 018550 149 VVEEETFDAVVVCNGHF 165 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~ 165 (354)
....+.+|.||+|+|..
T Consensus 174 ~~~~i~ad~VV~AtG~~ 190 (284)
T 1rp0_A 174 DPNVMEAKIVVSSCGHD 190 (284)
T ss_dssp CCEEEEEEEEEECCCSS
T ss_pred ceEEEECCEEEECCCCc
Confidence 23579999999999953
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.8e-11 Score=110.85 Aligned_cols=184 Identities=15% Similarity=0.164 Sum_probs=104.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC-CccceeecCCCCCCCCCCCCCCCCccc-ccccccchhc-------
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLRVN------- 72 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------- 72 (354)
.+||+|||||+||+++|..|++.|.+|+|+|+.. .+|+. +|.|...... ......+...
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~------------~c~ps~gGia~~~lv~el~al~g~~~~~ 88 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARM------------SCNPAIGGVAKGQITREIDALGGEMGKA 88 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC------------SSCSEEECHHHHHHHHHHHHHTCSHHHH
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCC------------ccccchhhhhHHHHHHHHHhcccHHHHH
Confidence 4799999999999999999999999999999864 23321 2222211100 0000000000
Q ss_pred cccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCcEE-EEEeecCCce
Q 018550 73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVV 150 (354)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~ 150 (354)
.......+.......... ........++..+...+.+.+.+. +++ + ++.+|+++..++ +... |.+.+|.
T Consensus 89 ~d~~gi~f~~l~~~kgpa--v~~~r~~~Dr~~l~~~L~~~l~~~~GV~--I-~~~~V~~L~~d~-g~V~GV~t~~G~--- 159 (641)
T 3cp8_A 89 IDATGIQFRMLNRSKGPA--MHSPRAQADKTQYSLYMRRIVEHEPNID--L-LQDTVIGVSANS-GKFSSVTVRSGR--- 159 (641)
T ss_dssp HHHHEEEEEEECSSSCTT--TCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEEET-TEEEEEEETTSC---
T ss_pred HHhcCCchhhcccccCcc--ccchhhhcCHHHHHHHHHHHHHhCCCCE--E-EeeEEEEEEecC-CEEEEEEECCCc---
Confidence 000000110000000000 000001234467888888888774 777 6 456899988766 5443 6666654
Q ss_pred EEEEeCEEEEeeCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEe
Q 018550 151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228 (354)
Q Consensus 151 ~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r 228 (354)
.+.+|.||+|||.++ +.+...|...+ . +.++ + |+.++++++..|.+.|.++..+..
T Consensus 160 -~i~Ad~VVLATG~~s--~~~i~~G~~~~-----~-----------~g~~--v-G~~~a~~la~~L~~~G~kv~~l~t 215 (641)
T 3cp8_A 160 -AIQAKAAILACGTFL--NGLIHIGMDHF-----P-----------GGRS--T-AEPPVEGLTESLASLGFSFGRLKT 215 (641)
T ss_dssp -EEEEEEEEECCTTCB--TCEEEETTEEE-----E-----------CSSS--T-TSCCBCSHHHHHHHTTCCEEEEEE
T ss_pred -EEEeCEEEECcCCCC--Cccceeeeeee-----c-----------cccc--c-CCchhhhhHHHHHhCCceEEeecC
Confidence 899999999999543 32222222211 0 0111 1 467889999999999988876644
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=112.66 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
....+...+.+.+.+.|++ ++++++|+++..++ +.|.|.+.++. ++.+|.||+|+|.++.
T Consensus 415 ~p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~-~~v~V~t~~G~----~i~Ad~VVlAtG~~s~ 474 (676)
T 3ps9_A 415 CPAELTRNVLELAQQQGLQ--IYYQYQLQNFSRKD-DCWLLNFAGDQ----QATHSVVVLANGHQIS 474 (676)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEET-TEEEEEETTSC----EEEESEEEECCGGGGG
T ss_pred CHHHHHHHHHHHHHhCCCE--EEeCCeeeEEEEeC-CeEEEEECCCC----EEECCEEEECCCcchh
Confidence 3467888888888888998 99999999999887 77888877654 7999999999997654
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=103.92 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=38.7
Q ss_pred EEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCccc
Q 018550 122 VRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 122 v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
+++++++++++..+++..++++.+|+ ++++|+||.|+|.+|..+.
T Consensus 126 v~~~~~v~~~~~~~~~~v~v~~~dG~----~~~adlvVgADG~~S~vR~ 170 (412)
T 4hb9_A 126 IQWNKTFVRYEHIENGGIKIFFADGS----HENVDVLVGADGSNSKVRK 170 (412)
T ss_dssp EECSCCEEEEEECTTSCEEEEETTSC----EEEESEEEECCCTTCHHHH
T ss_pred EEEEEEEEeeeEcCCCeEEEEECCCC----EEEeeEEEECCCCCcchHH
Confidence 89999999999876577889998886 8899999999998776553
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.3e-10 Score=102.20 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=88.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCc-EEEEeeCCCccc---eeecCCCCC--CCCCCCCCCCCcccccccccchhc-cc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN-LP 74 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~-v~lie~~~~~gg---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~ 74 (354)
.++|+|||||++|+++|..|++.|++ |+|+|+.+.++. .....+... ...++ .++.+... .+
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg-----------~~~~l~~~~~~ 72 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELG-----------LGPALAATAIP 72 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTT-----------CHHHHHHHSEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCC-----------ChHHHHhhCCC
Confidence 47999999999999999999999999 999999765431 111100000 00000 01111000 00
Q ss_pred cccccccCCCC------CccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hC-CcceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 75 RELMGFQAYPF------VARNYEGSVDLRRYPGHEEVLRYLQNFARE-FG-VDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 75 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
...+.+.+... ................+..+.+.+.+.+.+ .+ ++ ++++++|+++.. + +.+++++.+.
T Consensus 73 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~--v~~~~~v~~i~~-~-~~v~v~~~~~ 148 (410)
T 3c96_A 73 THELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQA--VRTGLGVERIEE-R-DGRVLIGARD 148 (410)
T ss_dssp ECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTS--EEESEEEEEEEE-E-TTEEEEEEEE
T ss_pred cceEEEEcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcE--EEECCEEEEEec-C-CccEEEEecC
Confidence 00000000000 000000000001123557888888888876 46 46 899999999998 5 6788887761
Q ss_pred -CCceEEEEeCEEEEeeCCCCCccc
Q 018550 147 -DDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 147 -~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
++...++.+|+||.|+|.+|..+.
T Consensus 149 ~~g~~~~~~ad~vV~AdG~~S~vR~ 173 (410)
T 3c96_A 149 GHGKPQALGADVLVGADGIHSAVRA 173 (410)
T ss_dssp TTSCEEEEEESEEEECCCTTCHHHH
T ss_pred CCCCceEEecCEEEECCCccchhHH
Confidence 122347899999999998776553
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=103.90 Aligned_cols=60 Identities=22% Similarity=0.165 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
.....+.+.+.+.+.+.|++ +..+++|+++..++ +.+.+.+.++ ++.+|.||+|+|.++.
T Consensus 161 ~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~a~~vV~A~G~~s~ 220 (382)
T 1ryi_A 161 VEPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDG-EALFIKTPSG-----DVWANHVVVASGVWSG 220 (382)
T ss_dssp CCHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSS-SSEEEEETTE-----EEEEEEEEECCGGGTH
T ss_pred EcHHHHHHHHHHHHHHCCCE--EEcCCcEEEEEEEC-CEEEEEcCCc-----eEEcCEEEECCChhHH
Confidence 34478888899988888988 99999999998776 6777766543 6899999999997654
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=104.20 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
...+...+.+.+.+.|++ ++.+++|+++..++ +.+.+.+.++ ++.+|.||+|+|.|+.
T Consensus 149 ~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~a~~vV~A~G~~~~ 206 (389)
T 2gf3_A 149 SENCIRAYRELAEARGAK--VLTHTRVEDFDISP-DSVKIETANG-----SYTADKLIVSMGAWNS 206 (389)
T ss_dssp HHHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SCEEEEETTE-----EEEEEEEEECCGGGHH
T ss_pred HHHHHHHHHHHHHHCCCE--EEcCcEEEEEEecC-CeEEEEeCCC-----EEEeCEEEEecCccHH
Confidence 367888888888888998 99999999999876 6677776443 6899999999997654
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-10 Score=101.85 Aligned_cols=58 Identities=24% Similarity=0.178 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEE-EEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
+...+...+.+.+.+.|++ +..+++|+++..++ +.+. +.+.++ ++.+|.||+|+|.|+
T Consensus 147 ~~~~l~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~-~~v~gv~~~~g-----~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 147 DPFEATTAFAVKAKEYGAK--LLEYTEVKGFLIEN-NEIKGVKTNKG-----IIKTGIVVNATNAWA 205 (382)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-SBEEEEEETTE-----EEECSEEEECCGGGH
T ss_pred CHHHHHHHHHHHHHHCCCE--EECCceEEEEEEEC-CEEEEEEECCc-----EEECCEEEECcchhH
Confidence 3477888888888888998 99999999999876 6676 766543 689999999999765
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=104.24 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhCCcceEEece---EEEEEEEeCCCcEE-EEEeecCCceEEEEeCEEEEeeCCCCCccc
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHT---EVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~---~v~~i~~~~~~~~~-v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
...+...+.+.+.+.|++ +++++ +|++|..++ +.++ |.+.++. ++.+|.||+|+|.|+....
T Consensus 160 ~~~~~~~L~~~a~~~Gv~--i~~~t~~~~V~~i~~~~-~~v~gV~t~~G~----~i~Ad~VV~AtG~~s~~l~ 225 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVK--FVTGTPQGRVVTLIFEN-NDVKGAVTADGK----IWRAERTFLCAGASAGQFL 225 (438)
T ss_dssp HHHHHHHHHHHHHHTTCE--EEESTTTTCEEEEEEET-TEEEEEEETTTE----EEECSEEEECCGGGGGGTS
T ss_pred HHHHHHHHHHHHHhcCCE--EEeCCcCceEEEEEecC-CeEEEEEECCCC----EEECCEEEECCCCChhhhc
Confidence 467888888888889998 99998 999999876 6776 8777663 7999999999998765433
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.2e-10 Score=104.04 Aligned_cols=159 Identities=11% Similarity=0.045 Sum_probs=86.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec---CCCCC--CCCCCCCCCCCccc-ccccc---cchhcc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY---TSETE--SDPLGVDPNRYPVH-SSLYK---SLRVNL 73 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~---~~~~~--~~~~~~~~~~~~~~-~~~~~---~~~~~~ 73 (354)
++|+||||||+|+++|..|+++|++|+|||+.+.++....- +++.. ...+++... +.. ..... ......
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~--~~~~~~~~~~~~~~~~~~ 104 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQ--IRTAGWPGDHPLDAAWVT 104 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHH--HHTSSCCTTSBCCEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHH--HHhhcCCcccccceEEec
Confidence 58999999999999999999999999999998655321100 00000 000000000 000 00000 000000
Q ss_pred ccccccccCCCCCccCC--C--CCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CC
Q 018550 74 PRELMGFQAYPFVARNY--E--GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DD 148 (354)
Q Consensus 74 ~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~ 148 (354)
......+..+++..... . .........++..+.+.+.+.+.+. ++++++|++++.++ +.+++++.+. ++
T Consensus 105 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~-~~v~v~~~~~~~G 178 (549)
T 2r0c_A 105 RVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRD-DHVRATITDLRTG 178 (549)
T ss_dssp SBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-----EECSEEEEEEEECS-SCEEEEEEETTTC
T ss_pred cCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeC-CEEEEEEEECCCC
Confidence 00000000011100000 0 0001112245577888888877664 78999999999877 7788888762 22
Q ss_pred ceEEEEeCEEEEeeCCCCCcc
Q 018550 149 VVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 149 ~~~~~~~d~vIlAtG~~s~~~ 169 (354)
...++.+|+||.|+|.+|..+
T Consensus 179 ~~~~i~a~~vVgADG~~S~vR 199 (549)
T 2r0c_A 179 ATRAVHARYLVACDGASSPTR 199 (549)
T ss_dssp CEEEEEEEEEEECCCTTCHHH
T ss_pred CEEEEEeCEEEECCCCCcHHH
Confidence 235799999999999877543
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=103.88 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+...+...+.+.+.+.|++ ++++++|+++..++ +.+.|.+.++ ++.+|.||+|+|.|+.
T Consensus 152 ~~~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~-~~~~V~t~~g-----~i~a~~VV~A~G~~s~ 210 (381)
T 3nyc_A 152 DTDALHQGYLRGIRRNQGQ--VLCNHEALEIRRVD-GAWEVRCDAG-----SYRAAVLVNAAGAWCD 210 (381)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EESSCCCCEEEEET-TEEEEECSSE-----EEEESEEEECCGGGHH
T ss_pred CHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEeC-CeEEEEeCCC-----EEEcCEEEECCChhHH
Confidence 3467888888888888998 99999999999887 6688877664 7899999999997653
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=107.49 Aligned_cols=214 Identities=20% Similarity=0.200 Sum_probs=106.5
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCC--CCCCCCCCCCccc----------ccccccchh
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES--DPLGVDPNRYPVH----------SSLYKSLRV 71 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~--~~~~~~~~~~~~~----------~~~~~~~~~ 71 (354)
||+|||+|++|+++|..|++.|.+|+|+||. ..++......+... ....+.|...+.+ ......+..
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~ 79 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS 79 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 6999999999999999999999999999998 55544332211110 0011222110000 000000000
Q ss_pred cccccccccc--CCCCCcc--CCCCCCCCC----CCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcE-EEE
Q 018550 72 NLPRELMGFQ--AYPFVAR--NYEGSVDLR----RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVK 142 (354)
Q Consensus 72 ~~~~~~~~~~--~~~~~~~--~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~ 142 (354)
..+.....+. +.++... ......... .-.....+...+.+.+++.+++ +..+++| ++..++ +.. .+.
T Consensus 80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~--i~~~~~v-~l~~~~-~~v~Gv~ 155 (472)
T 2e5v_A 80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIP--IIEDRLV-EIRVKD-GKVTGFV 155 (472)
T ss_dssp HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCC--EECCCEE-EEEEET-TEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCE--EEECcEE-EEEEeC-CEEEEEE
Confidence 0000000000 1111110 000000000 0012356777787777778998 9999999 998765 432 233
Q ss_pred EeecCCceEEEEeCEEEEeeCCCCCcccCCCC-CCCCCCcceeecc-----cCCCCCCCCCC-eEEEEccCCCHHHHHHH
Q 018550 143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVP-GIDSWPGKQMHSH-----NYRIPNPFQDQ-VVILIGHYASGLDIKRD 215 (354)
Q Consensus 143 ~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~-g~~~~~~~~~~~~-----~~~~~~~~~~~-~v~ViG~G~~g~e~a~~ 215 (354)
..+.+ .++.+|.||+||| ..+..+... +.....+..+... ...+....+.. +++++|+| +++++..
T Consensus 156 v~~~~---g~~~a~~VVlAtG--g~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~ 228 (472)
T 2e5v_A 156 TEKRG---LVEDVDKLVLATG--GYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTET 228 (472)
T ss_dssp ETTTE---EECCCSEEEECCC--CCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTH
T ss_pred EEeCC---CeEEeeeEEECCC--CCcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehh
Confidence 32211 2567999999999 555554432 1122223321110 01111111111 34455766 8888888
Q ss_pred HhccCCEEEEEEecC
Q 018550 216 LAGFAKEVHIASRSV 230 (354)
Q Consensus 216 l~~~g~~v~~~~r~~ 230 (354)
+...|..+ +..+.+
T Consensus 229 ~~~~G~~~-v~~~g~ 242 (472)
T 2e5v_A 229 LRGEGAQI-INENGE 242 (472)
T ss_dssp HHHTTCEE-EETTCC
T ss_pred hcCCceEE-ECCCCC
Confidence 88888766 444433
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.3e-10 Score=104.47 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-EEEEEeecCCceEEEEeC-EEEEeeCCCC
Q 018550 104 EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFD-AVVVCNGHFS 166 (354)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~~d-~vIlAtG~~s 166 (354)
.+...+.+.+.+.|++ ++++++|+++..++++. ..|...++ +...++.++ .||+|||.++
T Consensus 203 ~l~~~L~~~~~~~Gv~--i~~~t~v~~L~~~~~g~v~GV~~~~~-g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVR--AEYDMRVQTLVTDDTGRVVGIVAKQY-GKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCE--EECSEEEEEEEECTTCCEEEEEEEET-TEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCE--EEecCEeEEEEECCCCcEEEEEEEEC-CcEEEEEeCCeEEEeCCChh
Confidence 7888898888888998 99999999999873243 33555543 334578995 9999999766
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-10 Score=107.75 Aligned_cols=60 Identities=13% Similarity=0.332 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
...+...+.+.+.+.|++ ++++++|+++..++ +.|.|.+.+|. .++.+|.||+|+|.++.
T Consensus 411 p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~-~~v~V~t~~G~---~~i~Ad~VVlAtG~~s~ 470 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGMT--CHYQHELQRLKRID-SQWQLTFGQSQ---AAKHHATVILATGHRLP 470 (689)
T ss_dssp HHHHHHHHHHHHHHTTCE--EEESCCEEEEEECS-SSEEEEEC-CC---CCEEESEEEECCGGGTT
T ss_pred HHHHHHHHHHHHHhCCCE--EEeCCeEeEEEEeC-CeEEEEeCCCc---EEEECCEEEECCCcchh
Confidence 467888888888888998 99999999999887 67888887652 15899999999998754
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.4e-10 Score=101.06 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
..+...+.+.+.+.|++ +.++++|+++..++ +.+++.+.++ ++.+|.||+|+|.|+
T Consensus 153 ~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~v~t~~g-----~i~a~~VV~A~G~~s 208 (397)
T 2oln_A 153 RGTLAALFTLAQAAGAT--LRAGETVTELVPDA-DGVSVTTDRG-----TYRAGKVVLACGPYT 208 (397)
T ss_dssp HHHHHHHHHHHHHTTCE--EEESCCEEEEEEET-TEEEEEESSC-----EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCCE--EECCCEEEEEEEcC-CeEEEEECCC-----EEEcCEEEEcCCcCh
Confidence 56777788888888988 99999999999876 6677765443 789999999999754
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-10 Score=100.22 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=35.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCcccee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSW 41 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~ 41 (354)
.+||+|||||++|+++|..|+++ |++|+|+|+.+.+|+.+
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~ 120 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA 120 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence 47999999999999999999997 99999999987776543
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-09 Score=100.59 Aligned_cols=163 Identities=21% Similarity=0.192 Sum_probs=91.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCC---CC----CCCC--CCCC----------cccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES---DP----LGVD--PNRY----------PVHS 63 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~---~~----~~~~--~~~~----------~~~~ 63 (354)
++|+|||+|++|+++|..|++.|.+|+|+|+.+.+|+......+..+ .+ .+.. ++.. ....
T Consensus 127 ~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~ 206 (572)
T 1d4d_A 127 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP 206 (572)
T ss_dssp CSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 58999999999999999999999999999999888766554432211 00 0000 0000 0000
Q ss_pred cccccchhccccccccc--cCCCCCccC-CCCCCCC------CCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 64 SLYKSLRVNLPRELMGF--QAYPFVARN-YEGSVDL------RRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 64 ~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
.....+....+.....+ .+.++.... ....... ........+...+.+.+.+.+++ ++++++|+++..+
T Consensus 207 ~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~~~ 284 (572)
T 1d4d_A 207 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTD--IRLNSRVVRILED 284 (572)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEC
T ss_pred HHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCe--EEecCEEEEEEEC
Confidence 00000000000000000 011111000 0000000 01122467888899999888998 9999999999875
Q ss_pred C-CCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 135 E-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 135 ~-~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+ +..+.+...+.++....+.+|.||+|||.++.
T Consensus 285 ~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 285 ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp --CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred CCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 4 23344555543333457899999999997654
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.05 E-value=9e-10 Score=103.84 Aligned_cols=64 Identities=13% Similarity=0.006 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s 166 (354)
+...+...+...+.+.|.. +.++++|+++..+++..+.+.+.+. +++..++.++.||+|+|.|+
T Consensus 168 d~~~l~~~L~~~a~~~G~~--i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 168 DDARLTLEIMKEAVARGAV--ALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred cHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 3467888888888888998 9999999999987633356777652 22346899999999999765
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.5e-10 Score=107.68 Aligned_cols=155 Identities=16% Similarity=0.082 Sum_probs=89.3
Q ss_pred CeEEEEcCChHHHHHHHHHHH-cCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhc-------
Q 018550 3 RHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVN------- 72 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~-~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------- 72 (354)
++|+|||||++|+++|..|++ .|++|+|||+.+.+.....- .++.|.. .+..-...+.+...
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a--------~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~ 104 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQA--------DGIACRTMEMFEAFEFADSILKEACWINDV 104 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSC--------CEECHHHHHHHHHTTCHHHHHHHSEEECEE
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCce--------eeeCHHHHHHHHHcCcHHHHHHhcccccce
Confidence 589999999999999999999 99999999997654311100 0000000 00000000000000
Q ss_pred ---cc-----cccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCC--cceEEeceEEEEEEEeCC---CcE
Q 018550 73 ---LP-----RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGV--DQVVRLHTEVLNARLVES---NKW 139 (354)
Q Consensus 73 ---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~v~~~~~v~~i~~~~~---~~~ 139 (354)
.+ ........++.... ..........++..+.+.+.+.+.+.+. + ++++++|+++..+++ ..+
T Consensus 105 ~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~--v~~~~~v~~l~~~~~~~~~~v 180 (639)
T 2dkh_A 105 TFWKPDPGQPGRIARHGRVQDTED--GLSEFPHVILNQARVHDHYLERMRNSPSRLE--PHYARRVLDVKVDHGAADYPV 180 (639)
T ss_dssp EEEEECTTSTTCEEEEEEEESSCT--TSCSSCEEECCHHHHHHHHHHHHHHSTTCCC--CBCSEEEEEEEECTTCSSCCE
T ss_pred EEECCCCCCCcceEeecccCcccC--CCCCCceEeeCHHHHHHHHHHHHHhCCCCcE--EecCCEEEEEEECCCCCcCCE
Confidence 00 00000000000000 0000011124567899999999999876 6 899999999998652 257
Q ss_pred EEEEee----cCCceEEEEeCEEEEeeCCCCCcc
Q 018550 140 KVKSRK----KDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 140 ~v~~~~----g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
++++.+ .++...++.+|+||.|+|.+|..+
T Consensus 181 ~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR 214 (639)
T 2dkh_A 181 TVTLERCDAAHAGQIETVQARYVVGCDGARSNVR 214 (639)
T ss_dssp EEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHH
T ss_pred EEEEEeccccCCCCeEEEEeCEEEECCCcchHHH
Confidence 787765 233345899999999999877543
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=101.47 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~ 167 (354)
+...+...+.+.+.+.|++ +..+++|+++..++ +.|.+.+.+. ++...++.+|.||+|+|.|+.
T Consensus 147 ~~~~l~~~l~~~a~~~Gv~--i~~~~~V~~l~~~~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~ 211 (501)
T 2qcu_A 147 DDARLVLANAQMVVRKGGE--VLTRTRATSARREN-GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK 211 (501)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred cHHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeC-CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence 3467888888888888998 99999999999877 7788887642 222357899999999998754
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=98.65 Aligned_cols=101 Identities=23% Similarity=0.244 Sum_probs=81.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|++|+.+|..|++.|.+|+++|+.+.+..
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~------------------------------------------ 204 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP------------------------------------------ 204 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc------------------------------------------
Confidence 36899999999999999999999999999998753310
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .. .++.+.+.+.+++.|++ ++++++|++++.++ +.+.+.+.++. ++.+|.||+|
T Consensus 205 ---~-~~--------------~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~~D~vv~A 259 (455)
T 2yqu_A 205 ---T-MD--------------LEVSRAAERVFKKQGLT--IRTGVRVTAVVPEA-KGARVELEGGE----VLEADRVLVA 259 (455)
T ss_dssp ---T-SC--------------HHHHHHHHHHHHHHTCE--EECSCCEEEEEEET-TEEEEEETTSC----EEEESEEEEC
T ss_pred ---c-cC--------------HHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CEEEEEECCCe----EEEcCEEEEC
Confidence 0 00 66778888888888999 99999999999876 56667665543 7999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| .+|+.+
T Consensus 260 ~G--~~p~~~ 267 (455)
T 2yqu_A 260 VG--RRPYTE 267 (455)
T ss_dssp SC--EEECCT
T ss_pred cC--CCcCCC
Confidence 99 566554
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.2e-10 Score=102.32 Aligned_cols=42 Identities=31% Similarity=0.567 Sum_probs=38.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
++||+|||||++|+++|+.|+++|.+|+|+|+++.+||.+..
T Consensus 1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t 42 (431)
T 3k7m_X 1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYS 42 (431)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecc
Confidence 379999999999999999999999999999998889988763
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-09 Score=97.31 Aligned_cols=59 Identities=22% Similarity=0.166 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
+...+...+.+.+.+.|++ ++++++|+++..+++..+.+.+.++ ++.+|.||+|+|.++
T Consensus 172 ~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~~~~~~v~~~~g-----~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 172 KHDHVAWAFARKANEMGVD--IIQNCEVTGFIKDGEKVTGVKTTRG-----TIHAGKVALAGAGHS 230 (405)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSSBEEEEEETTC-----CEEEEEEEECCGGGH
T ss_pred CHHHHHHHHHHHHHHCCCE--EEcCCeEEEEEEeCCEEEEEEeCCc-----eEECCEEEECCchhH
Confidence 3467888888888888988 9999999999987523466766554 589999999999754
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=103.50 Aligned_cols=163 Identities=16% Similarity=0.108 Sum_probs=88.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-----cCCcEEEEeeCCCccce---eecCCCCC--CCCCCCCCCCCcccccccccchh
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR-----EGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRV 71 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~-----~g~~v~lie~~~~~gg~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 71 (354)
.++|+||||||+|+++|..|++ .|++|+|||+.+..... ....++.. ...+|+.... .........+..
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l-~~~~~~~~~~~~ 86 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKI-LSEANDMSTIAL 86 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHH-HTTCBCCCEEEE
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHH-HHhccccceEEE
Confidence 3689999999999999999999 99999999997543210 00000000 0001110000 000000000000
Q ss_pred cccc--cccc-ccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CcceEEeceEEEEEEEeC-------CCc
Q 018550 72 NLPR--ELMG-FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG---VDQVVRLHTEVLNARLVE-------SNK 138 (354)
Q Consensus 72 ~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~v~~~~~v~~i~~~~-------~~~ 138 (354)
..+. .... ...++.... ..........++..+.+.+.+.+.+.+ ++ ++++++++++..++ +..
T Consensus 87 ~~~~~~g~i~~~~~~~~~~~--~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~--v~~g~~v~~~~~d~~~~~~~~~~~ 162 (665)
T 1pn0_A 87 YNPDENGHIRRTDRIPDTLP--GISRYHQVVLHQGRIERRILDSIAEISDTRIK--VERPLIPEKMEIDSSKAEDPEAYP 162 (665)
T ss_dssp EEECTTSCEEEEEEEESSCT--TSCSSCCEECCHHHHHHHHHHHHHHHHTTSSC--EECSEEEEEEEECGGGTTCTTCCC
T ss_pred EeCCCCcceEeecccCcccC--CCCCCeeEEeeHHHHHHHHHHHHHhcCCCceE--EEeCCEEEEEEecCcccccCCCCC
Confidence 0000 0000 000000000 000011122456888899999988876 77 99999999998864 135
Q ss_pred EEEEEeec----------------------------------------CCceEEEEeCEEEEeeCCCCCcc
Q 018550 139 WKVKSRKK----------------------------------------DDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 139 ~~v~~~~g----------------------------------------~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
+++++.+. ++..+++.+|+||.|+|.+|..+
T Consensus 163 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR 233 (665)
T 1pn0_A 163 VTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVR 233 (665)
T ss_dssp EEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHH
T ss_pred EEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHH
Confidence 77766542 23346899999999999877644
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-09 Score=101.61 Aligned_cols=64 Identities=11% Similarity=-0.086 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEe-CCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLV-ESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+...+.+.+.+.+++ ++++++|+++..+ ++....+...+ .++....+.++.||+|||.++..
T Consensus 143 ~~l~~~L~~~~~~~gv~--i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~ 208 (588)
T 2wdq_A 143 HALLHTLYQQNLKNHTT--IFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_dssp HHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred HHHHHHHHHHHHhCCCE--EEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCccc
Confidence 57778888888888988 9999999999986 42334455543 23334578999999999976543
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-09 Score=100.36 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCCc
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+...+.+.+.+.+++ +..++.|+++..+++....+...+ .++....+.++.||+|||.++..
T Consensus 155 ~~l~~~L~~~~~~~gv~--i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~ 219 (621)
T 2h88_A 155 HSLLHTLYGRSLRYDTS--YFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT 219 (621)
T ss_dssp HHHHHHHHHHHTTSCCE--EEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred HHHHHHHHHHHHhCCCE--EEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence 46777777777777888 999999999987652233455443 23334578999999999976643
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-09 Score=94.89 Aligned_cols=101 Identities=22% Similarity=0.213 Sum_probs=81.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||+|+.|+.+|..|++.|.+|+++|+.+.+....
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~---------------------------------------- 184 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL---------------------------------------- 184 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc----------------------------------------
Confidence 4789999999999999999999999999999865331100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ ++++++|.++..++ +.+.+.+.++. ++++|.||+|
T Consensus 185 -----~~--------------~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~d~vv~a 238 (384)
T 2v3a_A 185 -----LH--------------PAAAKAVQAGLEGLGVR--FHLGPVLASLKKAG-EGLEAHLSDGE----VIPCDLVVSA 238 (384)
T ss_dssp -----SC--------------HHHHHHHHHHHHTTTCE--EEESCCEEEEEEET-TEEEEEETTSC----EEEESEEEEC
T ss_pred -----cC--------------HHHHHHHHHHHHHcCCE--EEeCCEEEEEEecC-CEEEEEECCCC----EEECCEEEEC
Confidence 00 66778888888888998 99999999998876 66777776664 7999999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| .+|+.
T Consensus 239 ~G--~~p~~ 245 (384)
T 2v3a_A 239 VG--LRPRT 245 (384)
T ss_dssp SC--EEECC
T ss_pred cC--CCcCH
Confidence 99 45543
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=9.5e-09 Score=94.80 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=82.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 207 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ----------------------------------------- 207 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-----------------------------------------
Confidence 368999999999999999999999999999987543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEe-ecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~~~~~~d~vIl 160 (354)
.. .++.+.+.+.+++.|++ ++++++|++++.++ +...+... +..+...++.+|.||+
T Consensus 208 -----~~--------------~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vv~ 265 (464)
T 2eq6_A 208 -----GD--------------PETAALLRRALEKEGIR--VRTKTKAVGYEKKK-DGLHVRLEPAEGGEGEEVVVDKVLV 265 (464)
T ss_dssp -----SC--------------HHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-TEEEEEEEETTCCSCEEEEESEEEE
T ss_pred -----cC--------------HHHHHHHHHHHHhcCCE--EEcCCEEEEEEEeC-CEEEEEEeecCCCceeEEEcCEEEE
Confidence 00 67778888888888999 99999999998776 56667765 3112234789999999
Q ss_pred eeCCCCCcccCC
Q 018550 161 CNGHFSVPRLAQ 172 (354)
Q Consensus 161 AtG~~s~~~~p~ 172 (354)
|+| ..|+...
T Consensus 266 a~G--~~p~~~~ 275 (464)
T 2eq6_A 266 AVG--RKPRTEG 275 (464)
T ss_dssp CSC--EEESCTT
T ss_pred CCC--cccCCCC
Confidence 999 6666543
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.4e-10 Score=95.76 Aligned_cols=43 Identities=35% Similarity=0.577 Sum_probs=39.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
|+.+|+||||||||+++|..|+++|++|+||||.+.+||.+..
T Consensus 1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~ 43 (336)
T 3kkj_A 1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSS 43 (336)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccc
Confidence 7899999999999999999999999999999999999987653
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.6e-10 Score=101.83 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEE---------EEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVL---------NARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~---------~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
...+...+.+.+.+.|++ +.++++|+ ++..++ +.+.+.+.++ ++.+|.||+|+|.|+
T Consensus 171 ~~~l~~~L~~~~~~~Gv~--i~~~~~v~~~~g~~~~~~i~~~~-~~v~v~~~~g-----~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 171 PGSLALLAAQQAIGQGAG--LLLNTRAELVPGGVRLHRLTVTN-THQIVVHETR-----QIRAGVIIVAAGAAG 236 (405)
T ss_dssp HHHHHHHHHHHHHTTTCE--EECSCEEEEETTEEEEECBCC--------CBCCE-----EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCE--EEcCCEEEeccccccccceEeeC-CeEEEEECCc-----EEECCEEEECCCccH
Confidence 366888888888888888 88999999 887655 5565554433 789999999999765
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.7e-09 Score=94.67 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=81.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 205 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS----------------------------------------- 205 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-----------------------------------------
Confidence 468999999999999999999999999999986533100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+.+.+.+++.|++ ++++++|.+++.++++...+.+.+|. ++.+|.||+|
T Consensus 206 -~----~--------------~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~----~i~~D~vv~a 260 (450)
T 1ges_A 206 -F----D--------------PMISETLVEVMNAEGPQ--LHTNAIPKAVVKNTDGSLTLELEDGR----SETVDCLIWA 260 (450)
T ss_dssp -S----C--------------HHHHHHHHHHHHHHSCE--EECSCCEEEEEECTTSCEEEEETTSC----EEEESEEEEC
T ss_pred -h----h--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCcEEEEEECCCc----EEEcCEEEEC
Confidence 0 0 56778888888888999 99999999998765234777777664 7899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| .+|+..
T Consensus 261 ~G--~~p~~~ 268 (450)
T 1ges_A 261 IG--REPAND 268 (450)
T ss_dssp SC--EEESCT
T ss_pred CC--CCcCCC
Confidence 99 566554
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=6.9e-09 Score=98.02 Aligned_cols=64 Identities=17% Similarity=0.045 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCC
Q 018550 102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~ 167 (354)
...+...+.+.+.+.|.. +..+++|+++..+++..+.+.+.+. ++...++.+|.||+|+|.|+.
T Consensus 187 ~~~l~~~l~~~a~~~Ga~--i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~ 251 (571)
T 2rgh_A 187 DARLVIDNIKKAAEDGAY--LVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVD 251 (571)
T ss_dssp HHHHHHHHHHHHHHTTCE--EESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHH
T ss_pred hHHHHHHHHHHHHHcCCe--EEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHH
Confidence 356666677777888998 9999999999987633356766542 222347999999999998753
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-09 Score=99.55 Aligned_cols=61 Identities=26% Similarity=0.313 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc--EEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK--WKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~--~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+..+.+.+.+.+.+.|++ ++++ +|+++..++ +. +.|.+.+|. ++.+|.||.|+|.+|..
T Consensus 170 ~~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~-~~~~~~v~~~~g~----~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 170 FDADEVARYLSEYAIARGVR--HVVD-DVQHVGQDE-RGWISGVHTKQHG----EISGDLFVDCTGFRGLL 232 (511)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECT-TSCEEEEEESSSC----EEECSEEEECCGGGCCC
T ss_pred EcHHHHHHHHHHHHHHCCCE--EEEC-eEeEEEEcC-CCCEEEEEECCCC----EEEcCEEEECCCcchHH
Confidence 45688999999999888988 8888 999998865 33 556666653 79999999999976654
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-08 Score=93.08 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=81.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 208 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG----------------------------------------- 208 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-----------------------------------------
Confidence 478999999999999999999999999999987543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ ++++++|.++..++ +...+.+.+. +...++++|.||+|
T Consensus 209 -----~~--------------~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~~-g~~~~~~~D~vv~a 265 (455)
T 1ebd_A 209 -----FE--------------KQMAAIIKKRLKKKGVE--VVTNALAKGAEERE-DGVTVTYEAN-GETKTIDADYVLVT 265 (455)
T ss_dssp -----SC--------------HHHHHHHHHHHHHTTCE--EEESEEEEEEEEET-TEEEEEEEET-TEEEEEEESEEEEC
T ss_pred -----cC--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeC-CeEEEEEEeC-CceeEEEcCEEEEC
Confidence 00 66778888888888999 99999999998765 5566665421 11247899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| .+|+..
T Consensus 266 ~G--~~p~~~ 273 (455)
T 1ebd_A 266 VG--RRPNTD 273 (455)
T ss_dssp SC--EEESCS
T ss_pred cC--CCcccC
Confidence 99 666654
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.9e-09 Score=98.07 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC-cEEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
.++..+...+.+.+.+.|++ ++.+ +|+++..++++ .+.|.+.+|. ++.+|.||+|+|.++..
T Consensus 162 i~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~~g~~~~v~~~~g~----~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 162 FDAHLVADFLKRWAVERGVN--RVVD-EVVDVRLNNRGYISNLLTKEGR----TLEADLFIDCSGMRGLL 224 (538)
T ss_dssp ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECTTSCEEEEEETTSC----EECCSEEEECCGGGCCC
T ss_pred EeHHHHHHHHHHHHHHCCCE--EEEe-eEeEEEEcCCCcEEEEEECCCc----EEEeCEEEECCCCchhh
Confidence 35588899999999888988 8888 89999886523 2466666653 79999999999976544
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.1e-10 Score=100.68 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=79.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCc---cceeecCCCCCCCCCCCCCCCCccccccc-cc-chhc-cc
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQV---GGSWIYTSETESDPLGVDPNRYPVHSSLY-KS-LRVN-LP 74 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~-~~ 74 (354)
++|+|||||++|+++|..|+++ |++|+|+|+.+.+ |......++.... ......+ .. +... .+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 71 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQH---------PANPLSYLDAPERLNPQF 71 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTC---------TTCGGGGSSCGGGGCCEE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHh---------hcCcchhhhhhHHHhhcc
Confidence 5899999999999999999999 9999999998766 4443333221110 0000011 00 0000 00
Q ss_pred cccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
.....+........ ...........+.++.+.+.+.+.+.+++ ++++++|++++.. . .+.
T Consensus 72 ~~~~~~~~~g~~~~--~~~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~------------~----~~~ 131 (381)
T 3c4a_A 72 LEDFKLVHHNEPSL--MSTGVLLCGVERRGLVHALRDKCRSQGIA--IRFESPLLEHGEL------------P----LAD 131 (381)
T ss_dssp ECCEEEEESSSEEE--CCCCSCEEEEEHHHHHHHHHHHHHHTTCE--EETTCCCCSGGGC------------C----GGG
T ss_pred ccceEEEeCCeeEE--ecCCCceeeecHHHHHHHHHHHHHHCCCE--EEeCCEeccchhc------------c----ccc
Confidence 00000000000000 00000001245688999999999888888 9999998877421 0 358
Q ss_pred eCEEEEeeCCCCC
Q 018550 155 FDAVVVCNGHFSV 167 (354)
Q Consensus 155 ~d~vIlAtG~~s~ 167 (354)
+|.||.|+|.+|.
T Consensus 132 ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 132 YDLVVLANGVNHK 144 (381)
T ss_dssp CSEEEECCGGGGG
T ss_pred CCEEEECCCCCch
Confidence 9999999998776
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.9e-09 Score=94.58 Aligned_cols=103 Identities=22% Similarity=0.236 Sum_probs=78.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|++|+.+|..|++.|.+|+++|+.+.+....
T Consensus 149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 188 (447)
T 1nhp_A 149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY---------------------------------------- 188 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccccc----------------------------------------
Confidence 3789999999999999999999999999999875331000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ ++++++|.++..++ ..+.+.+ ++. ++++|.||+|
T Consensus 189 -----~~--------------~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~v~~v~~-~~~----~i~~d~vi~a 241 (447)
T 1nhp_A 189 -----LD--------------KEFTDVLTEEMEANNIT--IATGETVERYEGDG-RVQKVVT-DKN----AYDADLVVVA 241 (447)
T ss_dssp -----CC--------------HHHHHHHHHHHHTTTEE--EEESCCEEEEECSS-BCCEEEE-SSC----EEECSEEEEC
T ss_pred -----CC--------------HHHHHHHHHHHHhCCCE--EEcCCEEEEEEccC-cEEEEEE-CCC----EEECCEEEEC
Confidence 00 66778888888888988 99999999998642 3334554 332 7899999999
Q ss_pred eCCCCCcccCCC
Q 018550 162 NGHFSVPRLAQV 173 (354)
Q Consensus 162 tG~~s~~~~p~~ 173 (354)
+| .+|+.+.+
T Consensus 242 ~G--~~p~~~~~ 251 (447)
T 1nhp_A 242 VG--VRPNTAWL 251 (447)
T ss_dssp SC--EEESCGGG
T ss_pred cC--CCCChHHH
Confidence 99 66665433
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=8.5e-09 Score=97.87 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCCcc
Q 018550 103 EEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
..+...+.+.+.+.+ ++ +..+++|+++..+++....+...+ .++....+.++.||+|||.++..+
T Consensus 134 ~~l~~~L~~~~~~~gnv~--i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~ 200 (602)
T 1kf6_A 134 FHMLHTLFQTSLQFPQIQ--RFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 200 (602)
T ss_dssp HHHHHHHHHHHTTCTTEE--EEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGS
T ss_pred HHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccc
Confidence 467777777776666 77 899999999998762223343332 223335789999999999766544
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=97.93 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCCCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
..+...+.+.+.+.+++ +..++.|+++..+++....+...+ .++....+.++.||+|||.++.
T Consensus 158 ~~l~~~L~~~a~~~gv~--i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~ 221 (660)
T 2bs2_A 158 HTMLFAVANECLKLGVS--IQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR 221 (660)
T ss_dssp HHHHHHHHHHHHHHTCE--EECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred HHHHHHHHHHHHhCCCE--EEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchh
Confidence 46778888888888998 999999999987652223344432 2233456899999999997654
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-08 Score=92.90 Aligned_cols=106 Identities=28% Similarity=0.420 Sum_probs=81.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+...+
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 222 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM---------------------------------------- 222 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSS----------------------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccccc----------------------------------------
Confidence 3689999999999999999999999999999876431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe-CCCcEEEEEeec-CCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV-ESNKWKVKSRKK-DDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~~v~~~~g-~~~~~~~~~d~vI 159 (354)
. .++.+++.+.+++.|++ ++++++|+++... +++...+.+.+. ++...++.+|.||
T Consensus 223 ------~--------------~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv 280 (478)
T 1v59_A 223 ------D--------------GEVAKATQKFLKKQGLD--FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL 280 (478)
T ss_dssp ------C--------------HHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred ------C--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEE
Confidence 0 66778888888889999 9999999999873 215566666521 1112478999999
Q ss_pred EeeCCCCCcccC
Q 018550 160 VCNGHFSVPRLA 171 (354)
Q Consensus 160 lAtG~~s~~~~p 171 (354)
+|+| .+|+..
T Consensus 281 ~a~G--~~p~~~ 290 (478)
T 1v59_A 281 VAVG--RRPYIA 290 (478)
T ss_dssp ECSC--EEECCT
T ss_pred ECCC--CCcCCC
Confidence 9999 666654
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=8.9e-09 Score=89.25 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=34.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccce
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGS 40 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~ 40 (354)
++|+|||||++|+++|..|++. |.+|+|+|+.+.+|+.
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg 105 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG 105 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccc
Confidence 4899999999999999999998 9999999998887644
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.4e-08 Score=89.91 Aligned_cols=105 Identities=26% Similarity=0.318 Sum_probs=80.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 213 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQ---------------------------------------- 213 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCC----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccC----------------------------------------
Confidence 3689999999999999999999999999999976431000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+.+++. ++ ++++++|.++..++ +...+...+.+++..++.+|.||+|
T Consensus 214 ------d--------------~~~~~~l~~~l~~~-V~--i~~~~~v~~i~~~~-~~v~v~~~~~~G~~~~i~~D~Vi~a 269 (492)
T 3ic9_A 214 ------D--------------EEMKRYAEKTFNEE-FY--FDAKARVISTIEKE-DAVEVIYFDKSGQKTTESFQYVLAA 269 (492)
T ss_dssp ------C--------------HHHHHHHHHHHHTT-SE--EETTCEEEEEEECS-SSEEEEEECTTCCEEEEEESEEEEC
T ss_pred ------C--------------HHHHHHHHHHHhhC-cE--EEECCEEEEEEEcC-CEEEEEEEeCCCceEEEECCEEEEe
Confidence 0 56677777777665 77 99999999999876 6677776532232358999999999
Q ss_pred eCCCCCcccCC
Q 018550 162 NGHFSVPRLAQ 172 (354)
Q Consensus 162 tG~~s~~~~p~ 172 (354)
+| ..|+...
T Consensus 270 ~G--~~p~~~~ 278 (492)
T 3ic9_A 270 TG--RKANVDK 278 (492)
T ss_dssp SC--CEESCSS
T ss_pred eC--CccCCCC
Confidence 99 6666543
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.86 E-value=7.4e-09 Score=97.60 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHh-CCcceEEeceEEEEEEEeCCCc--EEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 100 PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK--WKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~~-~~~~~v~~~~~v~~i~~~~~~~--~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+..+.+.+.+.+.+. |++ ++++ +|+++..++ +. ..|.+.+|. ++.+|.||+|+|.++..
T Consensus 191 ~~~~~l~~~L~~~~~~~~Gv~--i~~~-~V~~i~~~~-~g~~~~v~~~~G~----~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 191 FDAHLVADFLRRFATEKLGVR--HVED-RVEHVQRDA-NGNIESVRTATGR----VFDADLFVDCSGFRGLL 254 (550)
T ss_dssp ECHHHHHHHHHHHHHHHSCCE--EEEC-CEEEEEECT-TSCEEEEEETTSC----EEECSEEEECCGGGCCC
T ss_pred EcHHHHHHHHHHHHHhcCCcE--EEEC-eEeEEEEcC-CCCEEEEEECCCC----EEECCEEEECCCCchhh
Confidence 45678999999999988 998 8898 999998865 33 456666553 79999999999975543
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.7e-09 Score=102.66 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-EEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
+...+...+.+.+.+.|++ ++.+++|+++..++ +. +.+.+.++ ++.+|.||+|+|.|+
T Consensus 149 ~p~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~~~-~~v~~V~t~~G-----~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 149 SAARAVQLLIKRTESAGVT--YRGSTTVTGIEQSG-GRVTGVQTADG-----VIPADIVVSCAGFWG 207 (830)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEET-TEEEEEEETTE-----EEECSEEEECCGGGH
T ss_pred cHHHHHHHHHHHHHHcCCE--EECCceEEEEEEeC-CEEEEEEECCc-----EEECCEEEECCccch
Confidence 4467888888888888998 99999999999876 44 34666543 789999999999765
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.7e-08 Score=92.62 Aligned_cols=100 Identities=18% Similarity=0.397 Sum_probs=80.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~---~--------------------------------------- 214 (500)
T 1onf_A 177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR---K--------------------------------------- 214 (500)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT---T---------------------------------------
T ss_pred CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc---c---------------------------------------
Confidence 6899999999999999999999999999998754310 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEE-EEeCEEEEe
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE-ETFDAVVVC 161 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~-~~~d~vIlA 161 (354)
+ . .++.+.+.+.+++.|++ ++++++|.++..++++...+.+.+|+ + +.+|.||+|
T Consensus 215 ~----d--------------~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~----~~~~~D~vi~a 270 (500)
T 1onf_A 215 F----D--------------ESVINVLENDMKKNNIN--IVTFADVVEIKKVSDKNLSIHLSDGR----IYEHFDHVIYC 270 (500)
T ss_dssp S----C--------------HHHHHHHHHHHHHTTCE--EECSCCEEEEEESSTTCEEEEETTSC----EEEEESEEEEC
T ss_pred c----c--------------hhhHHHHHHHHHhCCCE--EEECCEEEEEEEcCCceEEEEECCCc----EEEECCEEEEC
Confidence 0 0 66778888888889999 99999999998764244677776654 4 899999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|+.
T Consensus 271 ~G--~~p~~ 277 (500)
T 1onf_A 271 VG--RSPDT 277 (500)
T ss_dssp CC--BCCTT
T ss_pred CC--CCcCC
Confidence 99 56665
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.1e-08 Score=90.64 Aligned_cols=105 Identities=25% Similarity=0.298 Sum_probs=83.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 237 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGM---------------------------------------- 237 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSS----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccC----------------------------------------
Confidence 3689999999999999999999999999999875431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~vIl 160 (354)
. .++.+.+.+.+++.|++ ++++++|.++..++ +...+...+.. +...++.+|.||+
T Consensus 238 ------d--------------~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~Vi~ 294 (491)
T 3urh_A 238 ------D--------------GEVAKQLQRMLTKQGID--FKLGAKVTGAVKSG-DGAKVTFEPVKGGEATTLDAEVVLI 294 (491)
T ss_dssp ------C--------------HHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-TEEEEEEEETTSCCCEEEEESEEEE
T ss_pred ------C--------------HHHHHHHHHHHHhCCCE--EEECCeEEEEEEeC-CEEEEEEEecCCCceEEEEcCEEEE
Confidence 0 67778888888888999 99999999999876 66777776522 2235889999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| ..|+..
T Consensus 295 a~G--~~p~~~ 303 (491)
T 3urh_A 295 ATG--RKPSTD 303 (491)
T ss_dssp CCC--CEECCT
T ss_pred eeC--CccCCC
Confidence 999 666554
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=92.49 Aligned_cols=101 Identities=21% Similarity=0.301 Sum_probs=81.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.....
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~--------------------------------------- 183 (410)
T 3ef6_A 143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVL--------------------------------------- 183 (410)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHH---------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhc---------------------------------------
Confidence 47899999999999999999999999999998754311000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. ..+.+.+.+.+++.|++ ++++++|.++..++ ....+.+.+|. ++++|.||+|
T Consensus 184 ------~--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~~~v~~~dg~----~i~aD~Vv~a 236 (410)
T 3ef6_A 184 ------G--------------RRIGAWLRGLLTELGVQ--VELGTGVVGFSGEG-QLEQVMASDGR----SFVADSALIC 236 (410)
T ss_dssp ------C--------------HHHHHHHHHHHHHHTCE--EECSCCEEEEECSS-SCCEEEETTSC----EEECSEEEEC
T ss_pred ------C--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEeccC-cEEEEEECCCC----EEEcCEEEEe
Confidence 0 66778888888889999 99999999998754 55577777765 8999999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|+.
T Consensus 237 ~G--~~p~~ 243 (410)
T 3ef6_A 237 VG--AEPAD 243 (410)
T ss_dssp SC--EEECC
T ss_pred eC--CeecH
Confidence 99 55553
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.9e-09 Score=96.54 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCc-EEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 100 PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 100 ~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+..+.+.+.+.+.+ .|++ ++++ +|+++..++++. ..+.+.+|. ++.+|+||.|+|.+|..
T Consensus 172 ~~r~~l~~~L~~~a~~~~Gv~--i~~~-~v~~i~~~~~g~~~~v~~~~g~----~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 172 LNAAKFSQLLTEHCTQKLGVT--HIRD-HVSQIINNQHGDIEKLITKQNG----EISGQLFIDCTGAKSLL 235 (526)
T ss_dssp ECHHHHHHHHHHHHHHTSCCE--EEEC-CEEEEEECTTSCEEEEEESSSC----EEECSEEEECSGGGCCC
T ss_pred EcHHHHHHHHHHHHHhcCCCE--EEEe-EEEEEEecCCCcEEEEEECCCC----EEEcCEEEECCCcchHH
Confidence 3568899999999988 8988 8888 699998865222 355565543 69999999999976543
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-09 Score=97.53 Aligned_cols=41 Identities=29% Similarity=0.472 Sum_probs=37.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC------CcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g------~~v~lie~~~~~gg~~~ 42 (354)
+++|+|||||++|+++|+.|+++| ++|+|+|+++.+||...
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~ 51 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQ 51 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEE
Confidence 479999999999999999999999 99999999988887544
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.4e-08 Score=92.01 Aligned_cols=102 Identities=21% Similarity=0.219 Sum_probs=80.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~----------------------------------------- 204 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ----------------------------------------- 204 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-----------------------------------------
Confidence 368999999999999999999999999999986533100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+.+.+.+++.|++ ++++++|.+++.++ +...+.+.+|. . ++.+|.||+|
T Consensus 205 -~----~--------------~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~G~--~-~i~~D~vv~a 259 (463)
T 2r9z_A 205 -F----D--------------PLLSATLAENMHAQGIE--THLEFAVAALERDA-QGTTLVAQDGT--R-LEGFDSVIWA 259 (463)
T ss_dssp -S----C--------------HHHHHHHHHHHHHTTCE--EESSCCEEEEEEET-TEEEEEETTCC--E-EEEESEEEEC
T ss_pred -c----C--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeC-CeEEEEEeCCc--E-EEEcCEEEEC
Confidence 0 0 56677888888888999 99999999998765 45777776552 1 6899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 260 ~G--~~p~~~ 267 (463)
T 2r9z_A 260 VG--RAPNTR 267 (463)
T ss_dssp SC--EEESCT
T ss_pred CC--CCcCCC
Confidence 99 566653
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-08 Score=90.10 Aligned_cols=101 Identities=27% Similarity=0.254 Sum_probs=81.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+....
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~---------------------------------------- 191 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV---------------------------------------- 191 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh----------------------------------------
Confidence 4789999999999999999999999999999875331000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-EEEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~~~d~vIl 160 (354)
.. ..+.+.+.+.+++.|++ ++++++|.++..++ +. ..+.+.+|. ++.+|.||+
T Consensus 192 -----~~--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~v~~v~l~dG~----~i~aD~Vv~ 245 (415)
T 3lxd_A 192 -----AG--------------EALSEFYQAEHRAHGVD--LRTGAAMDCIEGDG-TKVTGVRMQDGS----VIPADIVIV 245 (415)
T ss_dssp -----SC--------------HHHHHHHHHHHHHTTCE--EEETCCEEEEEESS-SBEEEEEESSSC----EEECSEEEE
T ss_pred -----cC--------------HHHHHHHHHHHHhCCCE--EEECCEEEEEEecC-CcEEEEEeCCCC----EEEcCEEEE
Confidence 00 77888888899999999 99999999998765 44 367777765 899999999
Q ss_pred eeCCCCCccc
Q 018550 161 CNGHFSVPRL 170 (354)
Q Consensus 161 AtG~~s~~~~ 170 (354)
|+| ..|+.
T Consensus 246 a~G--~~p~~ 253 (415)
T 3lxd_A 246 GIG--IVPCV 253 (415)
T ss_dssp CSC--CEESC
T ss_pred CCC--CccCh
Confidence 999 55554
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-08 Score=90.10 Aligned_cols=105 Identities=23% Similarity=0.253 Sum_probs=80.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 212 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT----------------------------------------- 212 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-----------------------------------------
Confidence 368999999999999999999999999999987543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHH-HHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
.. .++.+.+.+.+ ++.|++ ++++++|.++..++ +...+.+.+.+++..++.+|.||+
T Consensus 213 -----~d--------------~~~~~~l~~~l~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vv~ 270 (468)
T 2qae_A 213 -----LD--------------EDVTNALVGALAKNEKMK--FMTSTKVVGGTNNG-DSVSLEVEGKNGKRETVTCEALLV 270 (468)
T ss_dssp -----SC--------------HHHHHHHHHHHHHHTCCE--EECSCEEEEEEECS-SSEEEEEECC---EEEEEESEEEE
T ss_pred -----CC--------------HHHHHHHHHHHhhcCCcE--EEeCCEEEEEEEcC-CeEEEEEEcCCCceEEEECCEEEE
Confidence 00 66778888888 888999 99999999998765 556676652111124789999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| .+|+..
T Consensus 271 a~G--~~p~~~ 279 (468)
T 2qae_A 271 SVG--RRPFTG 279 (468)
T ss_dssp CSC--EEECCT
T ss_pred CCC--cccCCC
Confidence 999 566543
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4e-09 Score=98.92 Aligned_cols=38 Identities=42% Similarity=0.587 Sum_probs=32.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~ 41 (354)
+||+|||||++|+++|..|++ |.+|+|+||.+..++..
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s 46 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST 46 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence 689999999999999999999 99999999987665443
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.5e-08 Score=90.26 Aligned_cols=102 Identities=24% Similarity=0.253 Sum_probs=80.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+....
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~---------------------------------------- 181 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV---------------------------------------- 181 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc----------------------------------------
Confidence 3689999999999999999999999999999865331000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. ..+.+.+.+.+++.|++ ++++++|.++..+++....+.+.+|. ++.+|.||+|
T Consensus 182 -----~~--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~v~~V~~~dG~----~i~aD~Vv~a 236 (404)
T 3fg2_P 182 -----VT--------------PEISSYFHDRHSGAGIR--MHYGVRATEIAAEGDRVTGVVLSDGN----TLPCDLVVVG 236 (404)
T ss_dssp -----SC--------------HHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTSC----EEECSEEEEC
T ss_pred -----cC--------------HHHHHHHHHHHHhCCcE--EEECCEEEEEEecCCcEEEEEeCCCC----EEEcCEEEEC
Confidence 00 67788888889999999 99999999998765233457777764 8999999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|+.
T Consensus 237 ~G--~~p~~ 243 (404)
T 3fg2_P 237 VG--VIPNV 243 (404)
T ss_dssp CC--EEECC
T ss_pred cC--CccCH
Confidence 99 55553
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.7e-08 Score=89.88 Aligned_cols=103 Identities=24% Similarity=0.265 Sum_probs=81.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 186 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKY---------------------------------------- 186 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT----------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccccc----------------------------------------
Confidence 3689999999999999999999999999999875431000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ ++++++|.++...+ +...+.+.++ ++.+|.||+|
T Consensus 187 -----~d--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~v~v~~~~g-----~i~aD~Vv~A 239 (452)
T 3oc4_A 187 -----FD--------------KEMVAEVQKSLEKQAVI--FHFEETVLGIEETA-NGIVLETSEQ-----EISCDSGIFA 239 (452)
T ss_dssp -----CC--------------HHHHHHHHHHHHTTTEE--EEETCCEEEEEECS-SCEEEEESSC-----EEEESEEEEC
T ss_pred -----CC--------------HHHHHHHHHHHHHcCCE--EEeCCEEEEEEccC-CeEEEEECCC-----EEEeCEEEEC
Confidence 00 67788888888888998 99999999998765 5566666443 7899999999
Q ss_pred eCCCCCcccCCC
Q 018550 162 NGHFSVPRLAQV 173 (354)
Q Consensus 162 tG~~s~~~~p~~ 173 (354)
+| ..|+...+
T Consensus 240 ~G--~~p~~~~l 249 (452)
T 3oc4_A 240 LN--LHPQLAYL 249 (452)
T ss_dssp SC--CBCCCSSC
T ss_pred cC--CCCChHHH
Confidence 99 66665443
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-08 Score=91.66 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=81.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
.++++|||+|+.|+.+|..|++. |.+|+++++.+.+...
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-------------------------------------- 228 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-------------------------------------- 228 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT--------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc--------------------------------------
Confidence 36899999999999999999999 9999999987543100
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
+ . .++.+.+.+.+++.|++ ++++++|.++..++++...+.+.+|. ++.+|.|
T Consensus 229 ----~----d--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~G~----~i~~D~v 280 (490)
T 1fec_A 229 ----F----D--------------SELRKQLTEQLRANGIN--VRTHENPAKVTKNADGTRHVVFESGA----EADYDVV 280 (490)
T ss_dssp ----S----C--------------HHHHHHHHHHHHHTTEE--EEETCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred ----c----C--------------HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCEEEEEECCCc----EEEcCEE
Confidence 0 0 66778888888888998 99999999998765334777777664 7999999
Q ss_pred EEeeCCCCCcccC
Q 018550 159 VVCNGHFSVPRLA 171 (354)
Q Consensus 159 IlAtG~~s~~~~p 171 (354)
|+|+| .+|+..
T Consensus 281 v~a~G--~~p~~~ 291 (490)
T 1fec_A 281 MLAIG--RVPRSQ 291 (490)
T ss_dssp EECSC--EEESCT
T ss_pred EEccC--CCcCcc
Confidence 99999 566553
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-09 Score=89.38 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=61.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------------------------------ccccccCCCC-C
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------------------------------DETHEKQPGY-D 242 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------------------------------~~~~~~l~~~-~ 242 (354)
..|+|||+|++|+++|..|++.|.+|+++++... ..+.+.+++. +
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 4699999999999999999999999999998620 0111223343 4
Q ss_pred -CeEEecceeEEecC-Cc---EEEccCcEEecCEEEEcccCC
Q 018550 243 -NMWLHSMVERANED-GT---VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 243 -~~~~~~~v~~v~~~-~~---v~~~~g~~~~~D~vi~a~G~~ 279 (354)
+++ ++.|+++..+ +. |.+.+|+++.+|.||+|+|..
T Consensus 84 v~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~ 124 (232)
T 2cul_A 84 LHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 124 (232)
T ss_dssp EEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred cEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCC
Confidence 555 6788888743 32 566778889999999999994
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5e-08 Score=90.02 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=81.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 209 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN----------------------------------------- 209 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-----------------------------------------
Confidence 468999999999999999999999999999987543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEe-ecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~-~g~~~~~~~~~d~vIl 160 (354)
.. .++.+++.+.+++.|++ ++++++|.++..++ +...+... +++ ..++.+|.||+
T Consensus 210 -----~~--------------~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~~g~--~~~~~~D~vv~ 265 (464)
T 2a8x_A 210 -----ED--------------ADVSKEIEKQFKKLGVT--ILTATKVESIADGG-SQVTVTVTKDGV--AQELKAEKVLQ 265 (464)
T ss_dssp -----SC--------------HHHHHHHHHHHHHHTCE--EECSCEEEEEEECS-SCEEEEEESSSC--EEEEEESEEEE
T ss_pred -----cC--------------HHHHHHHHHHHHHcCCE--EEeCcEEEEEEEcC-CeEEEEEEcCCc--eEEEEcCEEEE
Confidence 00 66778888888889999 99999999998765 55666664 332 34789999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| ..|+..
T Consensus 266 a~G--~~p~~~ 274 (464)
T 2a8x_A 266 AIG--FAPNVE 274 (464)
T ss_dssp CSC--EEECCS
T ss_pred CCC--CCccCC
Confidence 999 566554
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.3e-08 Score=89.58 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=77.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 184 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA---------------------------------------- 184 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccc----------------------------------------
Confidence 3789999999999999999999999999999875331000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ ++++++|.++. + + .+.+.+|. ++++|.||+|
T Consensus 185 -----~~--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~i~--~-~--~v~~~~g~----~i~~D~vi~a 234 (408)
T 2gqw_A 185 -----AP--------------ATLADFVARYHAAQGVD--LRFERSVTGSV--D-G--VVLLDDGT----RIAADMVVVG 234 (408)
T ss_dssp -----SC--------------HHHHHHHHHHHHHTTCE--EEESCCEEEEE--T-T--EEEETTSC----EEECSEEEEC
T ss_pred -----cC--------------HHHHHHHHHHHHHcCcE--EEeCCEEEEEE--C-C--EEEECCCC----EEEcCEEEEC
Confidence 00 66778888888889999 99999999998 3 4 56666654 8999999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|+.
T Consensus 235 ~G--~~p~~ 241 (408)
T 2gqw_A 235 IG--VLAND 241 (408)
T ss_dssp SC--EEECC
T ss_pred cC--CCccH
Confidence 99 55543
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.9e-08 Score=89.84 Aligned_cols=104 Identities=25% Similarity=0.342 Sum_probs=83.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 218 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA----------------------------------------- 218 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-----------------------------------------
Confidence 368999999999999999999999999999987533100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ ++++++|.++..++ +...+...++++ ..++.+|.||+|
T Consensus 219 -----~~--------------~~~~~~l~~~l~~~Gv~--v~~~~~v~~i~~~~-~~~~v~~~~~~g-~~~~~~D~vi~a 275 (476)
T 3lad_A 219 -----VD--------------EQVAKEAQKILTKQGLK--ILLGARVTGTEVKN-KQVTVKFVDAEG-EKSQAFDKLIVA 275 (476)
T ss_dssp -----SC--------------HHHHHHHHHHHHHTTEE--EEETCEEEEEEECS-SCEEEEEESSSE-EEEEEESEEEEC
T ss_pred -----cC--------------HHHHHHHHHHHHhCCCE--EEECCEEEEEEEcC-CEEEEEEEeCCC-cEEEECCEEEEe
Confidence 00 66778888888888998 99999999999876 667777775433 357899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 276 ~G--~~p~~~ 283 (476)
T 3lad_A 276 VG--RRPVTT 283 (476)
T ss_dssp SC--EEECCT
T ss_pred eC--CcccCC
Confidence 99 566553
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=92.80 Aligned_cols=102 Identities=23% Similarity=0.256 Sum_probs=78.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+...
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 209 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT----------------------------------------- 209 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-----------------------------------------
Confidence 468999999999999999999999999999987643110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ ++++++|++++. + + ..+...+|+ ..++.+|.||+|
T Consensus 210 -----~~--------------~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~-~-~-v~v~~~~G~--~~~i~~D~vv~a 263 (458)
T 1lvl_A 210 -----YD--------------SELTAPVAESLKKLGIA--LHLGHSVEGYEN-G-C-LLANDGKGG--QLRLEADRVLVA 263 (458)
T ss_dssp -----SC--------------HHHHHHHHHHHHHHTCE--EETTCEEEEEET-T-E-EEEECSSSC--CCEECCSCEEEC
T ss_pred -----cC--------------HHHHHHHHHHHHHCCCE--EEECCEEEEEEe-C-C-EEEEECCCc--eEEEECCEEEEC
Confidence 00 66777888888888999 999999999975 3 3 444422231 247899999999
Q ss_pred eCCCCCcccCC
Q 018550 162 NGHFSVPRLAQ 172 (354)
Q Consensus 162 tG~~s~~~~p~ 172 (354)
+| .+|+.+.
T Consensus 264 ~G--~~p~~~~ 272 (458)
T 1lvl_A 264 VG--RRPRTKG 272 (458)
T ss_dssp CC--EEECCSS
T ss_pred cC--CCcCCCC
Confidence 99 6666543
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.5e-08 Score=91.42 Aligned_cols=102 Identities=18% Similarity=0.239 Sum_probs=80.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 223 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK----------------------------------------- 223 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-----------------------------------------
Confidence 368999999999999999999999999999987543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC-cEEEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
.. .++.+.+.+.+++.|++ ++++++|+++..++++ ...+.+.+|+ .++.+|.||+
T Consensus 224 -----~d--------------~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~~v~~~~G~---~~i~~D~vv~ 279 (479)
T 2hqm_A 224 -----FD--------------ECIQNTITDHYVKEGIN--VHKLSKIVKVEKNVETDKLKIHMNDSK---SIDDVDELIW 279 (479)
T ss_dssp -----SC--------------HHHHHHHHHHHHHHTCE--EECSCCEEEEEECC-CCCEEEEETTSC---EEEEESEEEE
T ss_pred -----cC--------------HHHHHHHHHHHHhCCeE--EEeCCEEEEEEEcCCCcEEEEEECCCc---EEEEcCEEEE
Confidence 00 66778888888888999 9999999999875422 3667776652 3799999999
Q ss_pred eeCCCCCccc
Q 018550 161 CNGHFSVPRL 170 (354)
Q Consensus 161 AtG~~s~~~~ 170 (354)
|+| .+|+.
T Consensus 280 a~G--~~p~~ 287 (479)
T 2hqm_A 280 TIG--RKSHL 287 (479)
T ss_dssp CSC--EEECC
T ss_pred CCC--CCCcc
Confidence 999 56655
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-08 Score=91.24 Aligned_cols=101 Identities=15% Similarity=0.198 Sum_probs=81.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
.++++|||+|+.|+.+|..|++. |.+|+++++.+.+...
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-------------------------------------- 232 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-------------------------------------- 232 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT--------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc--------------------------------------
Confidence 36899999999999999999999 9999999987533100
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
+ . .++.+.+.+.+++.|++ ++++++|.++..++++...+.+.+|. ++++|.|
T Consensus 233 ----~----d--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~G~----~i~~D~v 284 (495)
T 2wpf_A 233 ----F----D--------------ETIREEVTKQLTANGIE--IMTNENPAKVSLNTDGSKHVTFESGK----TLDVDVV 284 (495)
T ss_dssp ----S----C--------------HHHHHHHHHHHHHTTCE--EEESCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred ----c----C--------------HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCceEEEEECCCc----EEEcCEE
Confidence 0 0 66778888888889999 99999999998765344777777664 7999999
Q ss_pred EEeeCCCCCccc
Q 018550 159 VVCNGHFSVPRL 170 (354)
Q Consensus 159 IlAtG~~s~~~~ 170 (354)
|+|+| .+|+.
T Consensus 285 v~a~G--~~p~~ 294 (495)
T 2wpf_A 285 MMAIG--RIPRT 294 (495)
T ss_dssp EECSC--EEECC
T ss_pred EECCC--Ccccc
Confidence 99999 56654
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=4e-08 Score=90.84 Aligned_cols=105 Identities=24% Similarity=0.285 Sum_probs=81.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 215 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT----------------------------------------- 215 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-----------------------------------------
Confidence 468999999999999999999999999999987543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIl 160 (354)
.. .++.+.+.+.+++.|++ ++++++|.++..++ +...+.+.+. ++...++.+|.||+
T Consensus 216 -----~~--------------~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~ 273 (470)
T 1dxl_A 216 -----MD--------------AEIRKQFQRSLEKQGMK--FKLKTKVVGVDTSG-DGVKLTVEPSAGGEQTIIEADVVLV 273 (470)
T ss_dssp -----SC--------------HHHHHHHHHHHHHSSCC--EECSEEEEEEECSS-SSEEEEEEESSSCCCEEEEESEEEC
T ss_pred -----cc--------------HHHHHHHHHHHHHcCCE--EEeCCEEEEEEEcC-CeEEEEEEecCCCcceEEECCEEEE
Confidence 00 67778888888889999 99999999998765 5566666521 11124789999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| ..|+..
T Consensus 274 a~G--~~p~~~ 282 (470)
T 1dxl_A 274 SAG--RTPFTS 282 (470)
T ss_dssp CCC--EEECCT
T ss_pred CCC--CCcCCC
Confidence 999 566543
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-08 Score=93.02 Aligned_cols=101 Identities=21% Similarity=0.243 Sum_probs=80.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~----------------------------------------- 223 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG----------------------------------------- 223 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-----------------------------------------
Confidence 468999999999999999999999999999987543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee----cCCceEEEEeCE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK----KDDVVEEETFDA 157 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~----g~~~~~~~~~d~ 157 (354)
.. .++.+.+.+.+++.|++ ++++++|.+++.++ +...+.+.+ +. ++.+|.
T Consensus 224 -----~~--------------~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~~~g~----~~~~D~ 277 (482)
T 1ojt_A 224 -----AD--------------RDLVKVWQKQNEYRFDN--IMVNTKTVAVEPKE-DGVYVTFEGANAPKE----PQRYDA 277 (482)
T ss_dssp -----SC--------------HHHHHHHHHHHGGGEEE--EECSCEEEEEEEET-TEEEEEEESSSCCSS----CEEESC
T ss_pred -----cC--------------HHHHHHHHHHHHhcCCE--EEECCEEEEEEEcC-CeEEEEEeccCCCce----EEEcCE
Confidence 00 66778888888888888 99999999998766 556677665 32 678999
Q ss_pred EEEeeCCCCCcccC
Q 018550 158 VVVCNGHFSVPRLA 171 (354)
Q Consensus 158 vIlAtG~~s~~~~p 171 (354)
||+|+| .+|+..
T Consensus 278 vv~a~G--~~p~~~ 289 (482)
T 1ojt_A 278 VLVAAG--RAPNGK 289 (482)
T ss_dssp EEECCC--EEECGG
T ss_pred EEECcC--CCcCCC
Confidence 999999 666553
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.4e-08 Score=90.65 Aligned_cols=106 Identities=27% Similarity=0.333 Sum_probs=80.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--~-------------------------------------- 217 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV--G-------------------------------------- 217 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS--S--------------------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc--c--------------------------------------
Confidence 368999999999999999999999999999987543100 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc-EEEEEeec-CCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKK-DDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~~v~~~~g-~~~~~~~~~d~vI 159 (354)
.. .++.+.+.+.+++.|++ ++++++|.++..++ +. ..+...+. .+...++++|.||
T Consensus 218 -----~~--------------~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~i~~D~vv 275 (474)
T 1zmd_A 218 -----ID--------------MEISKNFQRILQKQGFK--FKLNTKVTGATKKS-DGKIDVSIEAASGGKAEVITCDVLL 275 (474)
T ss_dssp -----CC--------------HHHHHHHHHHHHHTTCE--EECSEEEEEEEECT-TSCEEEEEEETTSCCCEEEEESEEE
T ss_pred -----cC--------------HHHHHHHHHHHHHCCCE--EEeCceEEEEEEcC-CceEEEEEEecCCCCceEEEcCEEE
Confidence 00 67778888888889999 99999999998765 44 66665320 0112478999999
Q ss_pred EeeCCCCCcccC
Q 018550 160 VCNGHFSVPRLA 171 (354)
Q Consensus 160 lAtG~~s~~~~p 171 (354)
+|+| .+|+..
T Consensus 276 ~a~G--~~p~~~ 285 (474)
T 1zmd_A 276 VCIG--RRPFTK 285 (474)
T ss_dssp ECSC--EEECCT
T ss_pred ECcC--CCcCCC
Confidence 9999 566544
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-08 Score=89.74 Aligned_cols=100 Identities=24% Similarity=0.321 Sum_probs=78.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~---------------------------------------- 188 (431)
T 1q1r_A 149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV---------------------------------------- 188 (431)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccch----------------------------------------
Confidence 3689999999999999999999999999999865321000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEE--eCCCcE-EEEEeecCCceEEEEeCEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL--VESNKW-KVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~--~~~~~~-~v~~~~g~~~~~~~~~d~v 158 (354)
.. .++.+.+.+.+++.|++ ++++++|.++.. .+ +.. .+.+.+|. ++.+|.|
T Consensus 189 -----~~--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~-~~v~~v~~~~G~----~i~~D~V 242 (431)
T 1q1r_A 189 -----TA--------------PPVSAFYEHLHREAGVD--IRTGTQVCGFEMSTDQ-QKVTAVLCEDGT----RLPADLV 242 (431)
T ss_dssp -----SC--------------HHHHHHHHHHHHHHTCE--EECSCCEEEEEECTTT-CCEEEEEETTSC----EEECSEE
T ss_pred -----hh--------------HHHHHHHHHHHHhCCeE--EEeCCEEEEEEeccCC-CcEEEEEeCCCC----EEEcCEE
Confidence 00 66777888888888999 999999999987 33 333 67776664 7899999
Q ss_pred EEeeCCCCCcc
Q 018550 159 VVCNGHFSVPR 169 (354)
Q Consensus 159 IlAtG~~s~~~ 169 (354)
|+|+| .+|+
T Consensus 243 v~a~G--~~p~ 251 (431)
T 1q1r_A 243 IAGIG--LIPN 251 (431)
T ss_dssp EECCC--EEEC
T ss_pred EECCC--CCcC
Confidence 99999 5554
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=8.3e-09 Score=94.83 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEE---------------eCCCc-EEEEEeecCCceEEE--EeCEEEEee
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL---------------VESNK-WKVKSRKKDDVVEEE--TFDAVVVCN 162 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~---------------~~~~~-~~v~~~~g~~~~~~~--~~d~vIlAt 162 (354)
+...+...+.+.+.+.|++ ++.+++|+++.. .+ +. +.+.+.++ ++ .+|.||+|+
T Consensus 179 ~~~~l~~~L~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~~~~~~~~~~~~-~~v~~V~t~~g-----~i~~~Ad~VV~At 250 (448)
T 3axb_A 179 DAEKVVDYYYRRASGAGVE--FIFGRRVVGVELKPRVELGIEGEPLPWQE-ARASAAVLSDG-----TRVEVGEKLVVAA 250 (448)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEEESSCCCCTTSSCTTSC-EEEEEEEETTS-----CEEEEEEEEEECC
T ss_pred cHHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecccccccccccccccCC-CceEEEEeCCC-----EEeecCCEEEECC
Confidence 4468888888888888998 999999999987 33 33 45666544 57 999999999
Q ss_pred CCCCC
Q 018550 163 GHFSV 167 (354)
Q Consensus 163 G~~s~ 167 (354)
|.|+.
T Consensus 251 G~~s~ 255 (448)
T 3axb_A 251 GVWSN 255 (448)
T ss_dssp GGGHH
T ss_pred CcCHH
Confidence 97654
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.7e-08 Score=89.82 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=81.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.++|+|||+|+.|+.+|..|++. |.+|+++++.+.+...
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~---------------------------------------- 198 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG---------------------------------------- 198 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT----------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc----------------------------------------
Confidence 36899999999999999999999 9999999986532100
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
. .. .++.+.+.+.+++.|++ ++++++|.++..++ +...+.+.++. ++.+|.||+
T Consensus 199 ----~-~~--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~i~aD~Vv~ 252 (472)
T 3iwa_A 199 ----F-TS--------------KSLSQMLRHDLEKNDVV--VHTGEKVVRLEGEN-GKVARVITDKR----TLDADLVIL 252 (472)
T ss_dssp ----T-SC--------------HHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-SBEEEEEESSC----EEECSEEEE
T ss_pred ----c-cC--------------HHHHHHHHHHHHhcCCE--EEeCCEEEEEEccC-CeEEEEEeCCC----EEEcCEEEE
Confidence 0 00 67788888888889999 99999999998755 66777777764 899999999
Q ss_pred eeCCCCCcc
Q 018550 161 CNGHFSVPR 169 (354)
Q Consensus 161 AtG~~s~~~ 169 (354)
|+| ..|+
T Consensus 253 a~G--~~p~ 259 (472)
T 3iwa_A 253 AAG--VSPN 259 (472)
T ss_dssp CSC--EEEC
T ss_pred CCC--CCcC
Confidence 999 5554
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=7.2e-08 Score=89.76 Aligned_cols=101 Identities=18% Similarity=0.141 Sum_probs=81.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||+|+.|+.+|..|.+.|.+|+++++.+.+...
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 220 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY----------------------------------------- 220 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-----------------------------------------
Confidence 368999999999999999999999999999987543100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ ++++++|.++..++ +...+...++. ++.+|.||+|
T Consensus 221 -----~d--------------~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~aD~Vv~a 274 (499)
T 1xdi_A 221 -----ED--------------ADAALVLEESFAERGVR--LFKNARAASVTRTG-AGVLVTMTDGR----TVEGSHALMT 274 (499)
T ss_dssp -----SS--------------HHHHHHHHHHHHHTTCE--EETTCCEEEEEECS-SSEEEEETTSC----EEEESEEEEC
T ss_pred -----cC--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeC-CEEEEEECCCc----EEEcCEEEEC
Confidence 00 67788888888899999 99999999998765 55666655543 7999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| .+|+..
T Consensus 275 ~G--~~p~~~ 282 (499)
T 1xdi_A 275 IG--SVPNTS 282 (499)
T ss_dssp CC--EEECCS
T ss_pred CC--CCcCCC
Confidence 99 566553
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6.1e-08 Score=89.80 Aligned_cols=99 Identities=23% Similarity=0.365 Sum_probs=76.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 224 (480)
T 3cgb_A 186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI----------------------------------------- 224 (480)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-----------------------------------------
Confidence 478999999999999999999999999999986532110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+.+.+.+++.|++ ++++++|.++..++ +.+.+.+.+ .++++|.||+|
T Consensus 225 -~----~--------------~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~v~~v~~~~-----~~i~~D~vi~a 277 (480)
T 3cgb_A 225 -Y----D--------------GDMAEYIYKEADKHHIE--ILTNENVKAFKGNE-RVEAVETDK-----GTYKADLVLVS 277 (480)
T ss_dssp -S----C--------------HHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-BEEEEEETT-----EEEECSEEEEC
T ss_pred -C----C--------------HHHHHHHHHHHHHcCcE--EEcCCEEEEEEcCC-cEEEEEECC-----CEEEcCEEEEC
Confidence 0 0 66778888888889999 99999999998643 333344432 27899999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|+.
T Consensus 278 ~G--~~p~~ 284 (480)
T 3cgb_A 278 VG--VKPNT 284 (480)
T ss_dssp SC--EEESC
T ss_pred cC--CCcCh
Confidence 99 55554
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=6.3e-08 Score=89.43 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=79.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---~-------------------------------------- 214 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR---E-------------------------------------- 214 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT---S--------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC---C--------------------------------------
Confidence 36899999999999999999999999999998653310 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+.+++.|++ ++++++|.++..++ +.+.+.+.+ .++.+|.||+|
T Consensus 215 ------~--------------~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~~~v~~~~-----~~i~aD~Vv~a 266 (467)
T 1zk7_A 215 ------D--------------PAIGEAVTAAFRAEGIE--VLEHTQASQVAHMD-GEFVLTTTH-----GELRADKLLVA 266 (467)
T ss_dssp ------C--------------HHHHHHHHHHHHHTTCE--EETTCCEEEEEEET-TEEEEEETT-----EEEEESEEEEC
T ss_pred ------C--------------HHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEECC-----cEEEcCEEEEC
Confidence 0 66778888888889999 99999999998765 556666542 37899999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| .+|..
T Consensus 267 ~G--~~p~~ 273 (467)
T 1zk7_A 267 TG--RTPNT 273 (467)
T ss_dssp SC--EEESC
T ss_pred CC--CCcCC
Confidence 99 55554
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.2e-08 Score=89.08 Aligned_cols=102 Identities=20% Similarity=0.259 Sum_probs=78.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 188 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKY---------------------------------------- 188 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhh----------------------------------------
Confidence 3689999999999999999999999999999865331000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ ++++++|+++...+ +.......++. ++.+|.||+|
T Consensus 189 -----~~--------------~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~v~~v~~~g~----~i~~D~vv~a 242 (452)
T 2cdu_A 189 -----FD--------------KEFTDILAKDYEAHGVN--LVLGSKVAAFEEVD-DEIITKTLDGK----EIKSDIAILC 242 (452)
T ss_dssp -----SC--------------HHHHHHHHHHHHHTTCE--EEESSCEEEEEEET-TEEEEEETTSC----EEEESEEEEC
T ss_pred -----hh--------------hhHHHHHHHHHHHCCCE--EEcCCeeEEEEcCC-CeEEEEEeCCC----EEECCEEEEC
Confidence 00 67778888888899999 99999999998654 44432222443 7899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|+..
T Consensus 243 ~G--~~p~~~ 250 (452)
T 2cdu_A 243 IG--FRPNTE 250 (452)
T ss_dssp CC--EEECCG
T ss_pred cC--CCCCHH
Confidence 99 566544
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.9e-08 Score=89.80 Aligned_cols=100 Identities=18% Similarity=0.118 Sum_probs=82.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|||||+.|+.+|..+++.|.+|+++++...+ .
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L----~--------------------------------------- 259 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL----R--------------------------------------- 259 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS----T---------------------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccc----c---------------------------------------
Confidence 478999999999999999999999999999874211 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
..+ .++.+.+.+.+++.++. ++++..+.++...+ +...+...++. ++.+|.|++|
T Consensus 260 ---~~D---------------~ei~~~l~~~l~~~gi~--~~~~~~v~~~~~~~-~~~~v~~~~~~----~~~~D~vLvA 314 (542)
T 4b1b_A 260 ---GFD---------------QQCAVKVKLYMEEQGVM--FKNGILPKKLTKMD-DKILVEFSDKT----SELYDTVLYA 314 (542)
T ss_dssp ---TSC---------------HHHHHHHHHHHHHTTCE--EEETCCEEEEEEET-TEEEEEETTSC----EEEESEEEEC
T ss_pred ---ccc---------------hhHHHHHHHHHHhhcce--eecceEEEEEEecC-CeEEEEEcCCC----eEEEEEEEEc
Confidence 000 77888899999999998 99999999999887 77777777664 7789999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| .+|+..
T Consensus 315 vG--R~Pnt~ 322 (542)
T 4b1b_A 315 IG--RKGDID 322 (542)
T ss_dssp SC--EEESCG
T ss_pred cc--ccCCcc
Confidence 99 555543
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.9e-08 Score=88.81 Aligned_cols=101 Identities=16% Similarity=0.289 Sum_probs=82.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 229 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN----------------------------------------- 229 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-----------------------------------------
Confidence 468999999999999999999999999999986533100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+.+.+.+++.|++ ++++++|.++..++ +.+.+.+.++. ++.+|.||+|
T Consensus 230 -~----~--------------~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~aD~Vi~A 283 (484)
T 3o0h_A 230 -F----D--------------YDLRQLLNDAMVAKGIS--IIYEATVSQVQSTE-NCYNVVLTNGQ----TICADRVMLA 283 (484)
T ss_dssp -S----C--------------HHHHHHHHHHHHHHTCE--EESSCCEEEEEECS-SSEEEEETTSC----EEEESEEEEC
T ss_pred -c----C--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEeeC-CEEEEEECCCc----EEEcCEEEEe
Confidence 0 0 66778888888888999 99999999999876 66788887764 8999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|...
T Consensus 284 ~G--~~p~~~ 291 (484)
T 3o0h_A 284 TG--RVPNTT 291 (484)
T ss_dssp CC--EEECCT
T ss_pred eC--CCcCCC
Confidence 99 555544
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.8e-08 Score=90.18 Aligned_cols=101 Identities=21% Similarity=0.327 Sum_probs=77.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 233 (490)
T 2bc0_A 194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGY---------------------------------------- 233 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhH----------------------------------------
Confidence 3689999999999999999999999999999875331000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ ++++++|+++..++ ....+.+ ++. ++++|.||+|
T Consensus 234 -----~~--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~v~~v~~-~g~----~i~~D~Vi~a 286 (490)
T 2bc0_A 234 -----YD--------------RDLTDLMAKNMEEHGIQ--LAFGETVKEVAGNG-KVEKIIT-DKN----EYDVDMVILA 286 (490)
T ss_dssp -----SC--------------HHHHHHHHHHHHTTTCE--EEETCCEEEEECSS-SCCEEEE-SSC----EEECSEEEEC
T ss_pred -----HH--------------HHHHHHHHHHHHhCCeE--EEeCCEEEEEEcCC-cEEEEEE-CCc----EEECCEEEEC
Confidence 00 67778888888888999 99999999998632 2223444 443 7999999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| .+|+.+
T Consensus 287 ~G--~~p~~~ 294 (490)
T 2bc0_A 287 VG--FRPNTT 294 (490)
T ss_dssp CC--EEECCG
T ss_pred CC--CCcChH
Confidence 99 666554
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-07 Score=88.90 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=79.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------------------------------ 252 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI------------------------------------------ 252 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC------------------------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc------------------------------------------
Confidence 78999999999999999999999999999987533100
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc---EEEEEeecCCceEEEEeCEEE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK---WKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~---~~v~~~~g~~~~~~~~~d~vI 159 (354)
.. .++.+.+.+.+++.|++ ++++++|+++..++++. +.+.+.+|. .++.+|.||
T Consensus 253 ----~~--------------~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~~~~v~~~~v~~~~G~---~~i~aD~Vv 309 (523)
T 1mo9_A 253 ----KD--------------NETRAYVLDRMKEQGME--IISGSNVTRIEEDANGRVQAVVAMTPNGE---MRIETDFVF 309 (523)
T ss_dssp ----CS--------------HHHHHHHHHHHHHTTCE--EESSCEEEEEEECTTSBEEEEEEEETTEE---EEEECSCEE
T ss_pred ----cc--------------HHHHHHHHHHHHhCCcE--EEECCEEEEEEEcCCCceEEEEEEECCCc---EEEEcCEEE
Confidence 00 67788888888889999 99999999998765232 566665541 378999999
Q ss_pred EeeCCCCCccc
Q 018550 160 VCNGHFSVPRL 170 (354)
Q Consensus 160 lAtG~~s~~~~ 170 (354)
+|+| .+|+.
T Consensus 310 ~A~G--~~p~~ 318 (523)
T 1mo9_A 310 LGLG--EQPRS 318 (523)
T ss_dssp ECCC--CEECC
T ss_pred ECcC--CccCC
Confidence 9999 55554
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-07 Score=85.49 Aligned_cols=104 Identities=20% Similarity=0.219 Sum_probs=82.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||+|+.|+.+|..|++.|.+|+++++.. + ..
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~----l~-------------------------------------- 223 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI-V----LR-------------------------------------- 223 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC-S----ST--------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC-C----Cc--------------------------------------
Confidence 3689999999999999999999999999998742 1 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~vIl 160 (354)
.+ . .++.+.+.+.+++.|++ ++++++|.++...+++...++..++. +...++.+|.||+
T Consensus 224 ~~----d--------------~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~ 283 (483)
T 3dgh_A 224 GF----D--------------QQMAELVAASMEERGIP--FLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLW 283 (483)
T ss_dssp TS----C--------------HHHHHHHHHHHHHTTCC--EEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEE
T ss_pred cc----C--------------HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEE
Confidence 00 0 67788888888889999 99999999999865355777777754 3346899999999
Q ss_pred eeCCCCCccc
Q 018550 161 CNGHFSVPRL 170 (354)
Q Consensus 161 AtG~~s~~~~ 170 (354)
|+| ..|+.
T Consensus 284 a~G--~~p~~ 291 (483)
T 3dgh_A 284 AIG--RKGLV 291 (483)
T ss_dssp CSC--EEECC
T ss_pred Ccc--cccCc
Confidence 999 55554
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=5.4e-08 Score=93.18 Aligned_cols=67 Identities=9% Similarity=-0.023 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHh-CC-cceEEeceEEEEEEEeCC---CcEEEEEee-cCCceEEEEeCEEEEeeCCCCCcccC
Q 018550 103 EEVLRYLQNFAREF-GV-DQVVRLHTEVLNARLVES---NKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVPRLA 171 (354)
Q Consensus 103 ~~~~~~l~~~~~~~-~~-~~~v~~~~~v~~i~~~~~---~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~~~p 171 (354)
..+...+.+.+.+. ++ + +..++.|+++..+++ ....+...+ .++....+.++.||+|||.++....|
T Consensus 151 ~~~~~~l~~~~~~~~gv~~--i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~y~~ 223 (643)
T 1jnr_A 151 ESYKPIIAEAAKMAVGEEN--IYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRP 223 (643)
T ss_dssp TTHHHHHHHHHHHHHCGGG--EECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCC
T ss_pred HHHHHHHHHHHHhcCCCcE--EEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccccccC
Confidence 34666777777776 88 8 999999999988653 222333322 22233578999999999987664444
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=87.57 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=51.3
Q ss_pred hCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEEeeCCCCCcc--cCCCCCCCCCCcceeecccCCCC
Q 018550 116 FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPR--LAQVPGIDSWPGKQMHSHNYRIP 192 (354)
Q Consensus 116 ~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIlAtG~~s~~~--~p~~~g~~~~~~~~~~~~~~~~~ 192 (354)
.+++ +.++++|+++..++ +.+.+++.+. ++...++.+|.||+||| ..|+ .+.+.++....+.+.....++..
T Consensus 329 ~~v~--i~~~~~v~~v~~~~-~~~~v~~~~~~~g~~~~~~~D~Vv~AtG--~~p~~~~~~l~~l~~~~g~i~v~~~~~~~ 403 (463)
T 3s5w_A 329 PRHA--FRCMTTVERATATA-QGIELALRDAGSGELSVETYDAVILATG--YERQLHRQLLEPLAEYLGDHEIGRDYRLQ 403 (463)
T ss_dssp CCSE--EETTEEEEEEEEET-TEEEEEEEETTTCCEEEEEESEEEECCC--EECCC-CTTTGGGGGGBC--CCCTTSBCC
T ss_pred CCeE--EEeCCEEEEEEecC-CEEEEEEEEcCCCCeEEEECCEEEEeeC--CCCCCccchhHHHHHHhCCcccCcccccc
Confidence 3666 99999999999877 7888888743 23345799999999999 5555 33344333211222222222211
Q ss_pred -CCCCCCeEEEEcc
Q 018550 193 -NPFQDQVVILIGH 205 (354)
Q Consensus 193 -~~~~~~~v~ViG~ 205 (354)
......+|.++|.
T Consensus 404 ~~~~~~~~Ifa~G~ 417 (463)
T 3s5w_A 404 TDERCKVAIYAQGF 417 (463)
T ss_dssp BCTTBCSEEEESSC
T ss_pred cCCCCCCeEEEcCC
Confidence 1112346888884
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-07 Score=85.95 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=81.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----~-------------------------------------- 224 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL----R-------------------------------------- 224 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC----T--------------------------------------
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc----c--------------------------------------
Confidence 3689999999999999999999999999999865431 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC-cEEEEEeecC-Cce--EEEEeCE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKD-DVV--EEETFDA 157 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~-~~~--~~~~~d~ 157 (354)
.+ . .++.+.+.+.+++.|++ ++.++++.+++..+++ ...+...+.. +.. .++.+|.
T Consensus 225 ~~----d--------------~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~ 284 (478)
T 3dk9_A 225 SF----D--------------SMISTNCTEELENAGVE--VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDC 284 (478)
T ss_dssp TS----C--------------HHHHHHHHHHHHHTTCE--EETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESE
T ss_pred cc----C--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCE
Confidence 00 0 67778888888889999 9999999999876523 3556665421 211 5789999
Q ss_pred EEEeeCCCCCcccC
Q 018550 158 VVVCNGHFSVPRLA 171 (354)
Q Consensus 158 vIlAtG~~s~~~~p 171 (354)
||+|+| ..|+..
T Consensus 285 vi~a~G--~~p~~~ 296 (478)
T 3dk9_A 285 LLWAIG--RVPNTK 296 (478)
T ss_dssp EEECSC--EEESCT
T ss_pred EEEeec--cccCCC
Confidence 999999 566554
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-07 Score=89.37 Aligned_cols=100 Identities=22% Similarity=0.289 Sum_probs=79.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------- 188 (565)
T 3ntd_A 152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT------------------------------------------- 188 (565)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT-------------------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch-------------------------------------------
Confidence 6899999999999999999999999999998653210
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe------------------CCCcEEEEEe
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV------------------ESNKWKVKSR 144 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~------------------~~~~~~v~~~ 144 (354)
. .. .++.+.+.+.+++.|++ +++++++.++..+ .++...+...
T Consensus 189 --~-~~--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 249 (565)
T 3ntd_A 189 --P-VD--------------REMAGFAHQAIRDQGVD--LRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLS 249 (565)
T ss_dssp --T-SC--------------HHHHHHHHHHHHHTTCE--EEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEET
T ss_pred --h-cC--------------HHHHHHHHHHHHHCCCE--EEeCCeEEEEeccccccccccccccccccccCCCcEEEEEc
Confidence 0 00 66778888888889999 9999999999874 2255667666
Q ss_pred ecCCceEEEEeCEEEEeeCCCCCccc
Q 018550 145 KKDDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 145 ~g~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
++. ++.+|.||+|+| ..|..
T Consensus 250 ~g~----~i~~D~vi~a~G--~~p~~ 269 (565)
T 3ntd_A 250 NGE----LLETDLLIMAIG--VRPET 269 (565)
T ss_dssp TSC----EEEESEEEECSC--EEECC
T ss_pred CCC----EEEcCEEEECcC--Cccch
Confidence 554 899999999999 55543
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=88.37 Aligned_cols=101 Identities=22% Similarity=0.263 Sum_probs=78.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHH----cCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~----~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
.++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+...
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~------------------------------------- 222 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK------------------------------------- 222 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT-------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccc-------------------------------------
Confidence 3689999999999999999987 47899999875422000
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
.++ ..+.+.+.+.+++.|++ ++++++|.++..++ +...+.+.+|. ++.+|.
T Consensus 223 --------------------~l~--~~~~~~~~~~l~~~GV~--v~~~~~V~~i~~~~-~~~~v~l~dG~----~i~aD~ 273 (493)
T 1m6i_A 223 --------------------ILP--EYLSNWTMEKVRREGVK--VMPNAIVQSVGVSS-GKLLIKLKDGR----KVETDH 273 (493)
T ss_dssp --------------------TSC--HHHHHHHHHHHHTTTCE--EECSCCEEEEEEET-TEEEEEETTSC----EEEESE
T ss_pred --------------------cCC--HHHHHHHHHHHHhcCCE--EEeCCEEEEEEecC-CeEEEEECCCC----EEECCE
Confidence 011 56677788888888999 99999999998765 55667777664 899999
Q ss_pred EEEeeCCCCCccc
Q 018550 158 VVVCNGHFSVPRL 170 (354)
Q Consensus 158 vIlAtG~~s~~~~ 170 (354)
||+|+| ..|+.
T Consensus 274 Vv~a~G--~~pn~ 284 (493)
T 1m6i_A 274 IVAAVG--LEPNV 284 (493)
T ss_dssp EEECCC--EEECC
T ss_pred EEECCC--CCccH
Confidence 999999 55554
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-08 Score=95.85 Aligned_cols=66 Identities=12% Similarity=-0.046 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHh--CCcceEEeceEEEEEEEeCC---CcEEEEEee-cCCceEEEEeCEEEEeeCCCCCccc
Q 018550 103 EEVLRYLQNFAREF--GVDQVVRLHTEVLNARLVES---NKWKVKSRK-KDDVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 103 ~~~~~~l~~~~~~~--~~~~~v~~~~~v~~i~~~~~---~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
..+...+.+.+.+. +++ +..++.++++..+++ ....+...+ .++....+.++.||+|||.++....
T Consensus 166 ~~i~~~L~~~a~~~~~gV~--i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~~y~ 237 (662)
T 3gyx_A 166 ESYKVIVAEAAKNALGQDR--IIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVNVYR 237 (662)
T ss_dssp TSHHHHHHHHHHHHHCTTT--EECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSC
T ss_pred HHHHHHHHHHHHhcCCCcE--EEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCccccccc
Confidence 46777777777776 898 999999999988763 223343332 2233467899999999997664333
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-07 Score=85.92 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=75.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||+.|+.+|..+++.|.+|+++++.+.+...+.
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d--------------------------------------- 187 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMD--------------------------------------- 187 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSC---------------------------------------
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccccc---------------------------------------
Confidence 36899999999999999999999999999998764311000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.++.+.+.+..++.+++ ++++++|.+++. ..+++.+++ ++++|.|++|
T Consensus 188 ---------------------~~~~~~~~~~l~~~gV~--i~~~~~v~~~~~-----~~v~~~~g~----~~~~D~vl~a 235 (437)
T 4eqs_A 188 ---------------------ADMNQPILDELDKREIP--YRLNEEINAING-----NEITFKSGK----VEHYDMIIEG 235 (437)
T ss_dssp ---------------------GGGGHHHHHHHHHTTCC--EEESCCEEEEET-----TEEEETTSC----EEECSEEEEC
T ss_pred ---------------------chhHHHHHHHhhccceE--EEeccEEEEecC-----CeeeecCCe----EEeeeeEEEE
Confidence 44557778888888999 999999988752 236666664 8899999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|+.
T Consensus 236 ~G--~~Pn~ 242 (437)
T 4eqs_A 236 VG--THPNS 242 (437)
T ss_dssp CC--EEESC
T ss_pred ec--eecCc
Confidence 99 56654
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=5.8e-07 Score=83.37 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=81.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.. + +..
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~---l~~-------------------------------------- 222 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-P---LRG-------------------------------------- 222 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-S---STT--------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-c---ccc--------------------------------------
Confidence 3679999999999999999999999999999742 1 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC-CceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~-~~~~~~~~d~vIl 160 (354)
+ . .++.+.+.+.+++.|++ +++++++.++...+++...+...+.. ++..++.+|.||+
T Consensus 223 -~----d--------------~~~~~~l~~~l~~~gv~--~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~ 281 (488)
T 3dgz_A 223 -F----D--------------QQMSSLVTEHMESHGTQ--FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLW 281 (488)
T ss_dssp -S----C--------------HHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEE
T ss_pred -C----C--------------HHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEE
Confidence 0 0 67788888888889999 99999999998755356777776632 2334689999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| ..|+..
T Consensus 282 a~G--~~p~~~ 290 (488)
T 3dgz_A 282 AIG--RVPETR 290 (488)
T ss_dssp CSC--EEESCG
T ss_pred ccc--CCcccC
Confidence 999 555543
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-07 Score=85.34 Aligned_cols=101 Identities=13% Similarity=0.194 Sum_probs=80.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+. .
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l----~-------------------------------------- 207 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL----S-------------------------------------- 207 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS----T--------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc----c--------------------------------------
Confidence 4689999999999999999999999999999865331 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEE-EeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVK-SRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~-~~~g~~~~~~~~~d~vIl 160 (354)
.+ . .++.+.+.+.+++.|++ ++.+++|.++..++++...+. +.+| ++.+|.||+
T Consensus 208 ~~----~--------------~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~g-----~i~aD~Vv~ 262 (463)
T 4dna_A 208 RF----D--------------QDMRRGLHAAMEEKGIR--ILCEDIIQSVSADADGRRVATTMKHG-----EIVADQVML 262 (463)
T ss_dssp TS----C--------------HHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTSCEEEEESSSC-----EEEESEEEE
T ss_pred cc----C--------------HHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCCEEEEEEcCCC-----eEEeCEEEE
Confidence 00 0 67788888888899999 999999999998653445666 5554 389999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| .+|+..
T Consensus 263 a~G--~~p~~~ 271 (463)
T 4dna_A 263 ALG--RMPNTN 271 (463)
T ss_dssp CSC--EEESCT
T ss_pred eeC--cccCCC
Confidence 999 555544
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=83.70 Aligned_cols=93 Identities=26% Similarity=0.366 Sum_probs=74.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---~--------------------------------------- 181 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG---L--------------------------------------- 181 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT---C---------------------------------------
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc---C---------------------------------------
Confidence 6899999999999999999999999999998754311 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
. .++.+++.+.+++.|++ +.++++|.+++ . + .+.+.+| . +++|.||+|+
T Consensus 182 -----~--------------~~~~~~l~~~l~~~gV~--i~~~~~v~~i~--~-~--~v~~~~g----~-i~~D~vi~a~ 230 (367)
T 1xhc_A 182 -----D--------------EELSNMIKDMLEETGVK--FFLNSELLEAN--E-E--GVLTNSG----F-IEGKVKICAI 230 (367)
T ss_dssp -----C--------------HHHHHHHHHHHHHTTEE--EECSCCEEEEC--S-S--EEEETTE----E-EECSCEEEEC
T ss_pred -----C--------------HHHHHHHHHHHHHCCCE--EEcCCEEEEEE--e-e--EEEECCC----E-EEcCEEEECc
Confidence 0 67778888888888998 99999999986 2 2 3555443 3 8999999999
Q ss_pred CCCCCccc
Q 018550 163 GHFSVPRL 170 (354)
Q Consensus 163 G~~s~~~~ 170 (354)
| ..|+.
T Consensus 231 G--~~p~~ 236 (367)
T 1xhc_A 231 G--IVPNV 236 (367)
T ss_dssp C--EEECC
T ss_pred C--CCcCH
Confidence 9 55554
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.6e-07 Score=79.09 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=76.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .
T Consensus 145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----~-------------------------------------- 182 (320)
T 1trb_A 145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR----A-------------------------------------- 182 (320)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC----C--------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc----c--------------------------------------
Confidence 3689999999999999999999999999999864320 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC--CceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--DVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~~~~d~vI 159 (354)
. ..+.+.+.+.+.+.+++ +++++++.++..+++....+.+.+.. +...++.+|.||
T Consensus 183 ------~--------------~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv 240 (320)
T 1trb_A 183 ------E--------------KILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF 240 (320)
T ss_dssp ------C--------------HHHHHHHHHHHHTSSEE--EECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEE
T ss_pred ------C--------------HHHHHHHHHhcccCCeE--EEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEE
Confidence 0 45556666667777888 99999999998765222335555421 223578999999
Q ss_pred EeeCCCCCcccC
Q 018550 160 VCNGHFSVPRLA 171 (354)
Q Consensus 160 lAtG~~s~~~~p 171 (354)
+|+| ..|...
T Consensus 241 ~a~G--~~p~~~ 250 (320)
T 1trb_A 241 VAIG--HSPNTA 250 (320)
T ss_dssp ECSC--EEESCG
T ss_pred EEeC--CCCChH
Confidence 9999 555543
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.6e-08 Score=91.88 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEE-EEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 104 EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~-v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
.+.+.+.+.+++.|.+ |+++++|++|..++ ++++ |++.+|+ ++.+|.||.+++.+.
T Consensus 222 ~l~~aL~~~~~~~Gg~--I~~~~~V~~I~~~~-~~~~gV~~~~g~----~~~ad~VV~~a~~~~ 278 (501)
T 4dgk_A 222 ALVQGMIKLFQDLGGE--VVLNARVSHMETTG-NKIEAVHLEDGR----RFLTQAVASNADVVH 278 (501)
T ss_dssp HHHHHHHHHHHHTTCE--EECSCCEEEEEEET-TEEEEEEETTSC----EEECSCEEECCC---
T ss_pred chHHHHHHHHHHhCCc--eeeecceeEEEeeC-CeEEEEEecCCc----EEEcCEEEECCCHHH
Confidence 4556667777788888 99999999999987 5554 7788875 899999999988543
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-08 Score=89.94 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=31.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC------CcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g------~~v~lie~~~~ 36 (354)
+||+|||||++|+++|+.|+++| .+|+|+|++..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence 58999999999999999999998 89999999753
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.4e-07 Score=83.67 Aligned_cols=104 Identities=16% Similarity=0.288 Sum_probs=74.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+.
T Consensus 172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~--------------------------------------- 212 (466)
T 3l8k_A 172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLE--------------------------------------- 212 (466)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSC---------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCC---------------------------------------
Confidence 36899999999999999999999999999998653310000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+.+.+... ++ +.++++|.++..++++...+...+.++...++.+|.||+|
T Consensus 213 ------d--------------~~~~~~l~~~l~---v~--i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a 267 (466)
T 3l8k_A 213 ------D--------------QDIVNTLLSILK---LN--IKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLA 267 (466)
T ss_dssp ------C--------------HHHHHHHHHHHC---CC--EECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEEC
T ss_pred ------C--------------HHHHHHHHhcCE---EE--EEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEEC
Confidence 0 455555554443 77 8999999999875424456666521222357899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| .+|+..
T Consensus 268 ~G--~~p~~~ 275 (466)
T 3l8k_A 268 AG--RRPVIP 275 (466)
T ss_dssp CC--EEECCC
T ss_pred cC--CCcccc
Confidence 99 666554
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-06 Score=81.83 Aligned_cols=105 Identities=14% Similarity=0.223 Sum_probs=77.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||+|+.|+.+|..|++.|.+|+++++. .+ ..
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~----l~-------------------------------------- 246 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL----LR-------------------------------------- 246 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CS----ST--------------------------------------
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-cc----cc--------------------------------------
Confidence 357999999999999999999999999999974 21 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC---CcEEEEEeecCC-ceEEEEeCE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES---NKWKVKSRKKDD-VVEEETFDA 157 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~---~~~~v~~~~g~~-~~~~~~~d~ 157 (354)
.+ . .++.+.+.+.+++.|++ ++.++++.++...++ +...+.....++ +..++.+|.
T Consensus 247 ~~----d--------------~~~~~~~~~~l~~~GV~--v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~ 306 (519)
T 3qfa_A 247 GF----D--------------QDMANKIGEHMEEHGIK--FIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNT 306 (519)
T ss_dssp TS----C--------------HHHHHHHHHHHHHTTCE--EEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESE
T ss_pred cC----C--------------HHHHHHHHHHHHHCCCE--EEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCE
Confidence 00 0 67788888888889999 999988888876432 345555443322 224678999
Q ss_pred EEEeeCCCCCcccC
Q 018550 158 VVVCNGHFSVPRLA 171 (354)
Q Consensus 158 vIlAtG~~s~~~~p 171 (354)
||+|+| ..|+..
T Consensus 307 vi~a~G--~~p~~~ 318 (519)
T 3qfa_A 307 VMLAIG--RDACTR 318 (519)
T ss_dssp EEECSC--EEESCS
T ss_pred EEEecC--CcccCC
Confidence 999999 666554
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=86.64 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=73.2
Q ss_pred eEEEEcCChHHHHHHHHHHHc--------------CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccc
Q 018550 4 HVAVIGAGAAGLVVGHELLRE--------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL 69 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~--------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (354)
+++|||||+.|+.+|..|++. ..+|+|+|+.+.+-..
T Consensus 219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~----------------------------- 269 (502)
T 4g6h_A 219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNM----------------------------- 269 (502)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTT-----------------------------
T ss_pred ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccC-----------------------------
Confidence 699999999999999998754 3689999987643100
Q ss_pred hhccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEe--ecC
Q 018550 70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR--KKD 147 (354)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~--~g~ 147 (354)
|+ .++.+++.+.+++.|++ ++++++|++++. +...+... ++.
T Consensus 270 -----------------------------~~--~~~~~~~~~~L~~~GV~--v~~~~~v~~v~~---~~~~~~~~~~dg~ 313 (502)
T 4g6h_A 270 -----------------------------FE--KKLSSYAQSHLENTSIK--VHLRTAVAKVEE---KQLLAKTKHEDGK 313 (502)
T ss_dssp -----------------------------SC--HHHHHHHHHHHHHTTCE--EETTEEEEEECS---SEEEEEEECTTSC
T ss_pred -----------------------------CC--HHHHHHHHHHHHhccee--eecCceEEEEeC---CceEEEEEecCcc
Confidence 00 78889999999999999 999999999864 33444443 332
Q ss_pred CceEEEEeCEEEEeeCC
Q 018550 148 DVVEEETFDAVVVCNGH 164 (354)
Q Consensus 148 ~~~~~~~~d~vIlAtG~ 164 (354)
..++++++|.||.|+|.
T Consensus 314 ~~~~~i~ad~viwa~Gv 330 (502)
T 4g6h_A 314 ITEETIPYGTLIWATGN 330 (502)
T ss_dssp EEEEEEECSEEEECCCE
T ss_pred cceeeeccCEEEEccCC
Confidence 23467999999999994
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.2e-08 Score=86.17 Aligned_cols=88 Identities=7% Similarity=0.240 Sum_probs=67.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--------------ccccccC--------CCCC-CeEEecceeEEe
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--------------DETHEKQ--------PGYD-NMWLHSMVERAN 254 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--------------~~~~~~l--------~~~~-~~~~~~~v~~v~ 254 (354)
-+|+|||+|+.|+.+|..|.+.+.+|+++.+++. ....+++ .+.+ +++.++.|+.+.
T Consensus 10 ~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id 89 (385)
T 3klj_A 10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSID 89 (385)
T ss_dssp CSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEE
T ss_pred CCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEE
Confidence 4599999999999999999878889999998774 0001111 1223 677888999998
Q ss_pred cCCc-EEEccCcEEecCEEEEcccCCCccCcc
Q 018550 255 EDGT-VVFRNGRVVSADVIMHCTGLTGTSTTT 285 (354)
Q Consensus 255 ~~~~-v~~~~g~~~~~D~vi~a~G~~~~~p~~ 285 (354)
.+.+ |++++|+++.+|.+|+|||.+|..|..
T Consensus 90 ~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i 121 (385)
T 3klj_A 90 PNNKLVTLKSGEKIKYEKLIIASGSIANKIKV 121 (385)
T ss_dssp TTTTEEEETTSCEEECSEEEECCCEEECCCCC
T ss_pred CCCCEEEECCCCEEECCEEEEecCCCcCCCCC
Confidence 6544 888999999999999999998655543
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-07 Score=85.73 Aligned_cols=90 Identities=12% Similarity=0.063 Sum_probs=66.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhccC--CEEEEEEecCC-----------------ccc---cccCCCCCCeEEecceeEEe
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFA--KEVHIASRSVA-----------------DET---HEKQPGYDNMWLHSMVERAN 254 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g--~~v~~~~r~~~-----------------~~~---~~~l~~~~~~~~~~~v~~v~ 254 (354)
+|+|+|||+|+.|+.+|..|++.+ .+|++|++++. +.. ++.+.+.+.-+....++.+.
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~id 81 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGID 81 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEEE
Confidence 689999999999999999998775 58999988763 111 11122334334566788888
Q ss_pred cCCc-EEEccCcEEecCEEEEcccCCCccCccc
Q 018550 255 EDGT-VVFRNGRVVSADVIMHCTGLTGTSTTTL 286 (354)
Q Consensus 255 ~~~~-v~~~~g~~~~~D~vi~a~G~~~~~p~~~ 286 (354)
.+.+ +++.+|.++.+|.+++|||.+++.|..+
T Consensus 82 ~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~ 114 (401)
T 3vrd_B 82 PDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIE 114 (401)
T ss_dssp TTTTEEEETTSCEEECSEEEECCCEEECGGGSB
T ss_pred ccCcEEEecccceeecceeeeccCCccccCCcc
Confidence 6554 8888999999999999999985544443
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=4e-07 Score=86.53 Aligned_cols=98 Identities=21% Similarity=0.266 Sum_probs=77.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 225 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP----------------------------------------- 225 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-----------------------------------------
Confidence 468999999999999999999999999999986532100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+.+.+.+++.|++ ++++++|.++..++ + .+.+.++. ++.+|.||+|
T Consensus 226 -----~~--------------~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~--~v~~~~g~----~i~~D~Vi~a 277 (588)
T 3ics_A 226 -----ID--------------YEMAAYVHEHMKNHDVE--LVFEDGVDALEENG-A--VVRLKSGS----VIQTDMLILA 277 (588)
T ss_dssp -----SC--------------HHHHHHHHHHHHHTTCE--EECSCCEEEEEGGG-T--EEEETTSC----EEECSEEEEC
T ss_pred -----CC--------------HHHHHHHHHHHHHcCCE--EEECCeEEEEecCC-C--EEEECCCC----EEEcCEEEEc
Confidence 00 67778888888889999 99999999997643 3 45666654 8999999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|+.
T Consensus 278 ~G--~~p~~ 284 (588)
T 3ics_A 278 IG--VQPES 284 (588)
T ss_dssp SC--EEECC
T ss_pred cC--CCCCh
Confidence 99 55543
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-07 Score=90.54 Aligned_cols=39 Identities=38% Similarity=0.626 Sum_probs=36.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccce
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~ 40 (354)
.++|+|||||++|+++|..|++.|++|+|+|+.+.+||.
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggr 374 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGR 374 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceece
Confidence 368999999999999999999999999999998888873
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-07 Score=85.47 Aligned_cols=83 Identities=17% Similarity=0.307 Sum_probs=63.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccC--CEEEEEEecCC-----------------ccc---cccC-CCCCCeEEecceeEEe
Q 018550 198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSVA-----------------DET---HEKQ-PGYDNMWLHSMVERAN 254 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g--~~v~~~~r~~~-----------------~~~---~~~l-~~~~~~~~~~~v~~v~ 254 (354)
|+|+|||+|+.|+.+|..|++.+ .+|+++.+++. ++. ++.+ .+.+.-+....++.+.
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~Id 82 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESID 82 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEEE
Confidence 68999999999999999998875 68999998873 111 1122 2233223456788888
Q ss_pred cCCc-EEEccCcEEecCEEEEcccCCC
Q 018550 255 EDGT-VVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 255 ~~~~-v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
.+.+ |++++|+++++|.+|+|||.++
T Consensus 83 ~~~~~V~~~~g~~i~YD~LViAtG~~~ 109 (430)
T 3hyw_A 83 PDANTVTTQSGKKIEYDYLVIATGPKL 109 (430)
T ss_dssp TTTTEEEETTCCEEECSEEEECCCCEE
T ss_pred CCCCEEEECCCCEEECCEEEEeCCCCc
Confidence 6554 8899999999999999999874
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-07 Score=84.81 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=66.1
Q ss_pred CeEEEEccCCCHHHHHHHHhc---cCCEEEEEEecCC-----------------ccc----cccCCCCC-CeEEecceeE
Q 018550 198 QVVILIGHYASGLDIKRDLAG---FAKEVHIASRSVA-----------------DET----HEKQPGYD-NMWLHSMVER 252 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~---~g~~v~~~~r~~~-----------------~~~----~~~l~~~~-~~~~~~~v~~ 252 (354)
++|+|||||+.|+.+|..|++ .+.+|+++.+.+. ++. .+.+.+.+ ++ ....++.
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~-~~~~v~~ 83 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHF-IAQSAEQ 83 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEE-ECSCEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEE-EEeEEEE
Confidence 689999999999999999998 7899999998874 011 11122344 44 4678888
Q ss_pred EecCCc-EEEccCcEEecCEEEEcccCCCccCc
Q 018550 253 ANEDGT-VVFRNGRVVSADVIMHCTGLTGTSTT 284 (354)
Q Consensus 253 v~~~~~-v~~~~g~~~~~D~vi~a~G~~~~~p~ 284 (354)
+..+.. |++++++++.+|.+|+|||..++.|.
T Consensus 84 id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ 116 (437)
T 3sx6_A 84 IDAEAQNITLADGNTVHYDYLMIATGPKLAFEN 116 (437)
T ss_dssp EETTTTEEEETTSCEEECSEEEECCCCEECGGG
T ss_pred EEcCCCEEEECCCCEEECCEEEECCCCCcCccc
Confidence 886543 88888889999999999999955443
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.7e-07 Score=77.87 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=75.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|..|+.+|..|++.|.+|+++++.+.+ ..
T Consensus 152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~----~~-------------------------------------- 189 (335)
T 2zbw_A 152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQF----RA-------------------------------------- 189 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC----CS--------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCcc----Cc--------------------------------------
Confidence 368999999999999999999999999999986532 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIl 160 (354)
.....+.+.+.+++.+++ +++++++.++..++ +...+.+... ++...++.+|.||+
T Consensus 190 --------------------~~~~~~~l~~~l~~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~ 246 (335)
T 2zbw_A 190 --------------------HEASVKELMKAHEEGRLE--VLTPYELRRVEGDE-RVRWAVVFHNQTQEELALEVDAVLI 246 (335)
T ss_dssp --------------------CHHHHHHHHHHHHTTSSE--EETTEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEE
T ss_pred --------------------cHHHHHHHHhccccCCeE--EecCCcceeEccCC-CeeEEEEEECCCCceEEEecCEEEE
Confidence 034456666666777888 99999999998743 4335665521 22235789999999
Q ss_pred eeCCCCCccc
Q 018550 161 CNGHFSVPRL 170 (354)
Q Consensus 161 AtG~~s~~~~ 170 (354)
|+| ..|..
T Consensus 247 a~G--~~p~~ 254 (335)
T 2zbw_A 247 LAG--YITKL 254 (335)
T ss_dssp CCC--EEEEC
T ss_pred eec--CCCCc
Confidence 999 56654
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.9e-08 Score=90.69 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=37.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~gg~~~ 42 (354)
.+||+|||||++|++||+.|+++ |++|+|+|+++.+||.+.
T Consensus 10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~ 51 (513)
T 4gde_A 10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLAS 51 (513)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGC
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCee
Confidence 46899999999999999999985 999999999999999764
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-06 Score=81.37 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=74.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||||+.|+.+|..|++.|.+|+++++. .+ .. .
T Consensus 287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~----l~--------------------------------------~ 323 (598)
T 2x8g_A 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS-IL----LR--------------------------------------G 323 (598)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CS----ST--------------------------------------T
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cC----cC--------------------------------------c
Confidence 57999999999999999999999999999975 21 00 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe-----CC---CcEEEEEeecCCceEEEE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV-----ES---NKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~-----~~---~~~~v~~~~g~~~~~~~~ 154 (354)
+ . .++.+.+.+.+++.|++ +++++.+.++... ++ +...+.....++.+..+.
T Consensus 324 ~----d--------------~~~~~~~~~~l~~~gv~--i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~ 383 (598)
T 2x8g_A 324 F----D--------------QQMAEKVGDYMENHGVK--FAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEE 383 (598)
T ss_dssp S----C--------------HHHHHHHHHHHHHTTCE--EEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEE
T ss_pred C----C--------------HHHHHHHHHHHHhCCCE--EEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEecc
Confidence 0 0 56677788888888999 9999888888653 21 334454332222234456
Q ss_pred eCEEEEeeCCCCCccc
Q 018550 155 FDAVVVCNGHFSVPRL 170 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~ 170 (354)
+|.||+|+| ..|+.
T Consensus 384 ~D~vi~a~G--~~p~~ 397 (598)
T 2x8g_A 384 FETVIFAVG--REPQL 397 (598)
T ss_dssp ESEEEECSC--EEECG
T ss_pred CCEEEEEeC--Ccccc
Confidence 999999999 56654
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.2e-07 Score=82.81 Aligned_cols=98 Identities=23% Similarity=0.343 Sum_probs=72.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------------- 187 (449)
T 3kd9_A 149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRS----------------------------------------- 187 (449)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT-----------------------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh-----------------------------------------
Confidence 589999999999999999999999999999875331000
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
.. .++.+.+.+.+.+. ++ +++++.+.++..++ ....+ ..++ .++.+|.||+|+
T Consensus 188 ----~~--------------~~~~~~l~~~l~~~-v~--i~~~~~v~~i~~~~-~v~~v-~~~g----~~i~~D~Vv~a~ 240 (449)
T 3kd9_A 188 ----FD--------------KEVTDILEEKLKKH-VN--LRLQEITMKIEGEE-RVEKV-VTDA----GEYKAELVILAT 240 (449)
T ss_dssp ----SC--------------HHHHHHHHHHHTTT-SE--EEESCCEEEEECSS-SCCEE-EETT----EEEECSEEEECS
T ss_pred ----cC--------------HHHHHHHHHHHHhC-cE--EEeCCeEEEEeccC-cEEEE-EeCC----CEEECCEEEEee
Confidence 00 66777777777766 77 89999999997543 22223 3333 379999999999
Q ss_pred CCCCCccc
Q 018550 163 GHFSVPRL 170 (354)
Q Consensus 163 G~~s~~~~ 170 (354)
| ..|+.
T Consensus 241 G--~~p~~ 246 (449)
T 3kd9_A 241 G--IKPNI 246 (449)
T ss_dssp C--EEECC
T ss_pred C--CccCH
Confidence 9 55543
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.1e-07 Score=79.19 Aligned_cols=107 Identities=13% Similarity=0.207 Sum_probs=74.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.... . +
T Consensus 167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~-~--------------------------------------d 207 (369)
T 3d1c_A 167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPD-A--------------------------------------D 207 (369)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-------------------------------------------------
T ss_pred CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCC-C--------------------------------------C
Confidence 589999999999999999999999999999865331000 0 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
... .++ ..+.+.+.+..++.+ ++ ++.+++|.++..++ +.+.+.+.+|. ....+|.||+|
T Consensus 208 ~~~------------~~~--~~~~~~l~~~l~~~g~v~--~~~~~~v~~i~~~~-~~~~v~~~~g~---~~~~~d~vi~a 267 (369)
T 3d1c_A 208 PSV------------RLS--PYTRQRLGNVIKQGARIE--MNVHYTVKDIDFNN-GQYHISFDSGQ---SVHTPHEPILA 267 (369)
T ss_dssp CTT------------SCC--HHHHHHHHHHHHTTCCEE--EECSCCEEEEEEET-TEEEEEESSSC---CEEESSCCEEC
T ss_pred CCc------------cCC--HHHHHHHHHHHhhCCcEE--EecCcEEEEEEecC-CceEEEecCCe---EeccCCceEEe
Confidence 000 000 455666777777675 88 89999999998665 66777777764 12346999999
Q ss_pred eCCCCCccc
Q 018550 162 NGHFSVPRL 170 (354)
Q Consensus 162 tG~~s~~~~ 170 (354)
+| ..|..
T Consensus 268 ~G--~~~~~ 274 (369)
T 3d1c_A 268 TG--FDATK 274 (369)
T ss_dssp CC--BCGGG
T ss_pred ec--cCCcc
Confidence 99 56655
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.41 E-value=2.4e-06 Score=81.33 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=35.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~ 41 (354)
.+||+|||||++|+.+|..|++.|++|+|||+.+..++.+
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence 3689999999999999999999999999999987776533
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.6e-06 Score=77.05 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=73.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.+.+|+++++.+.+. .
T Consensus 163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~----~-------------------------------------- 200 (360)
T 3ab1_A 163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQ----G-------------------------------------- 200 (360)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCS----S--------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCC----C--------------------------------------
Confidence 3689999999999999999999999999999865320 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcE-EEEEeecCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~~~~d~vIl 160 (354)
...+.+.+.+..++.+++ +++++++.++..++ +.. .+.+...++....+.+|.||+
T Consensus 201 --------------------~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~~v~~~~~~g~~~~i~~D~vi~ 257 (360)
T 3ab1_A 201 --------------------HGKTAHEVERARANGTID--VYLETEVASIEESN-GVLTRVHLRSSDGSKWTVEADRLLI 257 (360)
T ss_dssp --------------------CSHHHHSSHHHHHHTSEE--EESSEEEEEEEEET-TEEEEEEEEETTCCEEEEECSEEEE
T ss_pred --------------------CHHHHHHHHHHhhcCceE--EEcCcCHHHhccCC-CceEEEEEEecCCCeEEEeCCEEEE
Confidence 022334455556667888 99999999998765 332 455442222235889999999
Q ss_pred eeCCCCCccc
Q 018550 161 CNGHFSVPRL 170 (354)
Q Consensus 161 AtG~~s~~~~ 170 (354)
|+| ..|..
T Consensus 258 a~G--~~p~~ 265 (360)
T 3ab1_A 258 LIG--FKSNL 265 (360)
T ss_dssp CCC--BCCSC
T ss_pred CCC--CCCCH
Confidence 999 55543
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.6e-07 Score=86.96 Aligned_cols=43 Identities=37% Similarity=0.487 Sum_probs=39.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCCCccceeec
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~~~gg~~~~ 43 (354)
|+++|+|||||++|+++|+.|+++|. +|+|+|+++.+||.+..
T Consensus 1 m~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t 45 (477)
T 3nks_A 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRS 45 (477)
T ss_dssp -CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCE
T ss_pred CCceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEE
Confidence 67899999999999999999999999 99999999999887643
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.3e-07 Score=79.01 Aligned_cols=87 Identities=22% Similarity=0.275 Sum_probs=64.1
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc-----------------------cccccCCCCC-CeEEecceeEE
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-----------------------ETHEKQPGYD-NMWLHSMVERA 253 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-----------------------~~~~~l~~~~-~~~~~~~v~~v 253 (354)
.+|+|||+|+.|+.+|..|++.|.+|+++.+.+.. ...+.+.+.. ..+....++.+
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i 82 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDA 82 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEE
Confidence 46999999999999999999999999999975430 0111113332 23346688888
Q ss_pred ecCC---cEEEccCcEEecCEEEEcccCCCccCc
Q 018550 254 NEDG---TVVFRNGRVVSADVIMHCTGLTGTSTT 284 (354)
Q Consensus 254 ~~~~---~v~~~~g~~~~~D~vi~a~G~~~~~p~ 284 (354)
..++ .|.+.+++++.+|.+|+|||..+..|.
T Consensus 83 ~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~ 116 (297)
T 3fbs_A 83 KGSFGEFIVEIDGGRRETAGRLILAMGVTDELPE 116 (297)
T ss_dssp EEETTEEEEEETTSCEEEEEEEEECCCCEEECCC
T ss_pred EEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCC
Confidence 7543 277788889999999999999955443
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=76.74 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=71.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------------------------------------------ 210 (338)
T 3itj_A 173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------------------------------------------ 210 (338)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS------------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC------------------------------------------
Confidence 36899999999999999999999999999998653200
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vI 159 (354)
.+.+.+.+.+ .+++ +++++++.++..+++....+.+.+. ++...++.+|.||
T Consensus 211 ------------------------~~~~~~~l~~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi 264 (338)
T 3itj_A 211 ------------------------STIMQKRAEKNEKIE--ILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLF 264 (338)
T ss_dssp ------------------------CHHHHHHHHHCTTEE--EECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEE
T ss_pred ------------------------CHHHHHHHHhcCCeE--EeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEE
Confidence 0122333333 4888 8999999999986623334666652 2223589999999
Q ss_pred EeeCCCCCccc
Q 018550 160 VCNGHFSVPRL 170 (354)
Q Consensus 160 lAtG~~s~~~~ 170 (354)
+|+| ..|..
T Consensus 265 ~a~G--~~p~~ 273 (338)
T 3itj_A 265 YAIG--HTPAT 273 (338)
T ss_dssp ECSC--EEECC
T ss_pred EEeC--CCCCh
Confidence 9999 55544
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=76.90 Aligned_cols=100 Identities=24% Similarity=0.216 Sum_probs=69.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .
T Consensus 152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----~-------------------------------------- 189 (325)
T 2q7v_A 152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR----A-------------------------------------- 189 (325)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC----S--------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC----c--------------------------------------
Confidence 3689999999999999999999999999999864320 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIl 160 (354)
. ..+. ++..++.+++ +++++++.++..++ ....+.+.+ .++...++.+|.||+
T Consensus 190 -------------------~-~~~~---~~l~~~~gv~--i~~~~~v~~i~~~~-~v~~v~~~~~~~g~~~~i~~D~vi~ 243 (325)
T 2q7v_A 190 -------------------N-KVAQ---ARAFANPKMK--FIWDTAVEEIQGAD-SVSGVKLRNLKTGEVSELATDGVFI 243 (325)
T ss_dssp -------------------C-HHHH---HHHHTCTTEE--EECSEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEE
T ss_pred -------------------c-hHHH---HHHHhcCCce--EecCCceEEEccCC-cEEEEEEEECCCCcEEEEEcCEEEE
Confidence 0 2221 2222234777 88999999998743 333566553 122235789999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| ..|+..
T Consensus 244 a~G--~~p~~~ 252 (325)
T 2q7v_A 244 FIG--HVPNTA 252 (325)
T ss_dssp CSC--EEESCG
T ss_pred ccC--CCCChH
Confidence 999 555543
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=3.4e-07 Score=82.96 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=63.0
Q ss_pred CeEEEEccCCCHHHHHHHHhc---cCCEEEEEEecCC-----------------cc----ccccCCCCC-CeEEecceeE
Q 018550 198 QVVILIGHYASGLDIKRDLAG---FAKEVHIASRSVA-----------------DE----THEKQPGYD-NMWLHSMVER 252 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~---~g~~v~~~~r~~~-----------------~~----~~~~l~~~~-~~~~~~~v~~ 252 (354)
++|+|||+|++|+.+|..|++ .|.+|+++.+++. ++ ..+.+.+.+ +++.+ .++.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 80 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK 80 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence 579999999999999999999 8899999998774 00 011122233 45544 7888
Q ss_pred EecCCc-EEEccCc----EEecCEEEEcccCCCccCc
Q 018550 253 ANEDGT-VVFRNGR----VVSADVIMHCTGLTGTSTT 284 (354)
Q Consensus 253 v~~~~~-v~~~~g~----~~~~D~vi~a~G~~~~~p~ 284 (354)
+..+.. |+++++. ++.+|.+|+|+|..+..|.
T Consensus 81 i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ 117 (409)
T 3h8l_A 81 IDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATEL 117 (409)
T ss_dssp EETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGG
T ss_pred EeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccC
Confidence 875543 7777774 3899999999999955443
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.37 E-value=2.9e-06 Score=73.64 Aligned_cols=98 Identities=21% Similarity=0.271 Sum_probs=70.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.+.+|+++++.+.+ ..
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~----~~-------------------------------------- 181 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM----KA-------------------------------------- 181 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC----CS--------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc----Cc--------------------------------------
Confidence 368999999999999999999999999999986532 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcE-EEEEeec-CCceEEEEeCEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW-KVKSRKK-DDVVEEETFDAV 158 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g-~~~~~~~~~d~v 158 (354)
. +.+.+.+.+ .+++ +++++++.++..++ +.. .+.+.++ +++..++.+|.|
T Consensus 182 ---------------------~---~~~~~~l~~~~gv~--v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~v 234 (310)
T 1fl2_A 182 ---------------------D---QVLQDKLRSLKNVD--IILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELAGI 234 (310)
T ss_dssp ---------------------C---HHHHHHHHTCTTEE--EESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEE
T ss_pred ---------------------c---HHHHHHHhhCCCeE--EecCCceEEEEcCC-CcEEEEEEEECCCCcEEEEEcCEE
Confidence 0 122233333 4777 89999999998754 433 4666552 233457899999
Q ss_pred EEeeCCCCCccc
Q 018550 159 VVCNGHFSVPRL 170 (354)
Q Consensus 159 IlAtG~~s~~~~ 170 (354)
|+|+| ..|+.
T Consensus 235 i~a~G--~~p~~ 244 (310)
T 1fl2_A 235 FVQIG--LLPNT 244 (310)
T ss_dssp EECSC--EEESC
T ss_pred EEeeC--CccCc
Confidence 99999 55554
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-06 Score=75.61 Aligned_cols=101 Identities=14% Similarity=0.058 Sum_probs=69.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. .
T Consensus 143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----~-------------------------------------- 180 (311)
T 2q0l_A 143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR----C-------------------------------------- 180 (311)
T ss_dssp TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC----S--------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC----C--------------------------------------
Confidence 3689999999999999999999999999999864320 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIl 160 (354)
. ..+.+ ...++.+++ +.+++++.++..++++...+.+.+ .++...++.+|.||+
T Consensus 181 -----~---------------~~~~~---~l~~~~gv~--v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~ 235 (311)
T 2q0l_A 181 -----A---------------PITLE---HAKNNDKIE--FLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFI 235 (311)
T ss_dssp -----C---------------HHHHH---HHHTCTTEE--EETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred -----C---------------HHHHH---HHhhCCCeE--EEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEE
Confidence 0 22222 122235777 889999999987641222455553 122235789999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| ..|..+
T Consensus 236 a~G--~~p~~~ 244 (311)
T 2q0l_A 236 FVG--YDVNNA 244 (311)
T ss_dssp CSC--EEECCG
T ss_pred Eec--CccChh
Confidence 999 566543
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.36 E-value=3e-07 Score=83.67 Aligned_cols=41 Identities=39% Similarity=0.726 Sum_probs=37.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+||+|||||++|+++|+.|+++|.+|+|+|+++.+||.+..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTN 41 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEE
Confidence 58999999999999999999999999999999888876543
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-07 Score=81.17 Aligned_cols=42 Identities=40% Similarity=0.684 Sum_probs=39.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC-CCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~-~~~gg~~~~ 43 (354)
.++|+|||||++|+++|..|.+.|++|+|+|++ +.+||.+..
T Consensus 44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t 86 (376)
T 2e1m_A 44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT 86 (376)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceee
Confidence 468999999999999999999999999999999 899998765
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-06 Score=74.75 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=71.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|.+.+.+|+++++.+.+..
T Consensus 154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------ 191 (323)
T 3f8d_A 154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA------------------------------------------ 191 (323)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS------------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc------------------------------------------
Confidence 36899999999999999999999999999998653200
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIl 160 (354)
. .. ++.+..++.+++ +.+++++.++..++ +...+.+.+ .+++..++.+|.||+
T Consensus 192 ------~--------------~~---~~~~~~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~ 245 (323)
T 3f8d_A 192 ------Q--------------PI---YVETVKKKPNVE--FVLNSVVKEIKGDK-VVKQVVVENLKTGEIKELNVNGVFI 245 (323)
T ss_dssp ------C--------------HH---HHHHHHTCTTEE--EECSEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEE
T ss_pred ------C--------------HH---HHHHHHhCCCcE--EEeCCEEEEEeccC-ceeEEEEEECCCCceEEEEcCEEEE
Confidence 0 22 223333344777 89999999998764 555577766 122235789999999
Q ss_pred eeCCCCCcc
Q 018550 161 CNGHFSVPR 169 (354)
Q Consensus 161 AtG~~s~~~ 169 (354)
|+| ..|.
T Consensus 246 a~G--~~p~ 252 (323)
T 3f8d_A 246 EIG--FDPP 252 (323)
T ss_dssp CCC--EECC
T ss_pred EEC--CCCC
Confidence 999 5555
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=76.10 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=71.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|.+.+.+|+++++.+.+ ..
T Consensus 147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~----~~-------------------------------------- 184 (315)
T 3r9u_A 147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF----RA-------------------------------------- 184 (315)
T ss_dssp TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC----BS--------------------------------------
T ss_pred cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC----CC--------------------------------------
Confidence 368999999999999999999999999999986532 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .. .+.+..++.+++ +++++++.++..+++....+.+...+++..++.+|.||+|
T Consensus 185 ------~--------------~~---~~~~~~~~~gv~--~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a 239 (315)
T 3r9u_A 185 ------A--------------PS---TVEKVKKNEKIE--LITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTF 239 (315)
T ss_dssp ------C--------------HH---HHHHHHHCTTEE--EECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEEC
T ss_pred ------C--------------HH---HHHHHHhcCCeE--EEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEE
Confidence 0 22 223333556787 8999999999876522233555522233458899999999
Q ss_pred eCCCCCcccC
Q 018550 162 NGHFSVPRLA 171 (354)
Q Consensus 162 tG~~s~~~~p 171 (354)
+| ..|...
T Consensus 240 ~G--~~p~~~ 247 (315)
T 3r9u_A 240 VG--LNVRNE 247 (315)
T ss_dssp SC--EEECCG
T ss_pred Ec--CCCCch
Confidence 99 555543
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.1e-07 Score=82.79 Aligned_cols=41 Identities=39% Similarity=0.652 Sum_probs=37.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~gg~~~ 42 (354)
+++|+|||||++|+++|..|++.| .+|+|+|+++.+||.+.
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~ 47 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCH 47 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCccc
Confidence 478999999999999999999999 89999999999987654
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-06 Score=75.60 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=70.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|..|+.+|..|++.|.+|+++++.+.+. .
T Consensus 159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~----~-------------------------------------- 196 (333)
T 1vdc_A 159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR----A-------------------------------------- 196 (333)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC----S--------------------------------------
T ss_pred CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC----c--------------------------------------
Confidence 3689999999999999999999999999999865320 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC-cE-EEEEeec-CCceEEEEeCEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KW-KVKSRKK-DDVVEEETFDAV 158 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~-~v~~~~g-~~~~~~~~~d~v 158 (354)
. ..+. ++..++.+++ +++++++.++..++++ .. .+.+.+. ++...++.+|.|
T Consensus 197 ------~--------------~~~~---~~~~~~~gv~--i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~v 251 (333)
T 1vdc_A 197 ------S--------------KIMQ---QRALSNPKID--VIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGL 251 (333)
T ss_dssp ------C--------------HHHH---HHHHTCTTEE--EECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEE
T ss_pred ------c--------------HHHH---HHHHhCCCee--EecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEE
Confidence 0 1111 2233445777 8889999999875421 32 3555532 222358999999
Q ss_pred EEeeCCCCCcccC
Q 018550 159 VVCNGHFSVPRLA 171 (354)
Q Consensus 159 IlAtG~~s~~~~p 171 (354)
|+|+| ..|...
T Consensus 252 i~a~G--~~p~~~ 262 (333)
T 1vdc_A 252 FFAIG--HEPATK 262 (333)
T ss_dssp EECSC--EEESCG
T ss_pred EEEeC--CccchH
Confidence 99999 555543
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.2e-07 Score=83.51 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=38.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.+||+|||||++|+++|..|++.|++|+++|+++.+||.+..
T Consensus 11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence 368999999999999999999999999999999999987643
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.6e-07 Score=83.19 Aligned_cols=40 Identities=38% Similarity=0.629 Sum_probs=37.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
+||+|||||++|+++|+.|+++|.+|+|+|+++.+||.+.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~ 40 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFT 40 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCcee
Confidence 5899999999999999999999999999999988887653
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.9e-07 Score=86.03 Aligned_cols=40 Identities=38% Similarity=0.643 Sum_probs=37.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCccceee
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~gg~~~ 42 (354)
++|+|||||++|++||..|++.| .+|+|+|+++.+||.+.
T Consensus 9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~ 49 (516)
T 1rsg_A 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQ 49 (516)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCC
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCcee
Confidence 68999999999999999999999 99999999999998764
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=98.31 E-value=7.3e-07 Score=77.34 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=60.9
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc-----------------------cccccCCCCC-CeEEecceeEEe
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-----------------------ETHEKQPGYD-NMWLHSMVERAN 254 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-----------------------~~~~~l~~~~-~~~~~~~v~~v~ 254 (354)
.|+|||+|+.|+.+|..+++.|.+|+++.+...- ..++++.+.. ..+....+..+.
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT 87 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence 4899999999999999999999999999975430 0111223333 333444444444
Q ss_pred c--CC--cEEEccCcEEecCEEEEcccCCCccCcc
Q 018550 255 E--DG--TVVFRNGRVVSADVIMHCTGLTGTSTTT 285 (354)
Q Consensus 255 ~--~~--~v~~~~g~~~~~D~vi~a~G~~~~~p~~ 285 (354)
. ++ .+.+.+|+++.+|.||+|||.+|..|..
T Consensus 88 ~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i 122 (304)
T 4fk1_A 88 KQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSI 122 (304)
T ss_dssp ECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSC
T ss_pred ecCCCcEEEEECCCCEEEeCEEEEccCCccccccc
Confidence 2 22 2777888999999999999998555543
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.9e-06 Score=72.02 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=70.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.+.+|+++++.+.+. .
T Consensus 156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~----~--------------------------------------- 192 (319)
T 3cty_A 156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM----C--------------------------------------- 192 (319)
T ss_dssp SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC----S---------------------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC----C---------------------------------------
Confidence 689999999999999999999999999999864320 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC-cEEEEEee-cCCceEEEEeCEEEE
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVV 160 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~-g~~~~~~~~~d~vIl 160 (354)
. ..+ .+.+.+.+++ +++++++.++..++ + ...+.+.+ .++...++.+|.||+
T Consensus 193 -----~--------------~~l----~~~l~~~gv~--i~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi~ 246 (319)
T 3cty_A 193 -----E--------------NAY----VQEIKKRNIP--YIMNAQVTEIVGDG-KKVTGVKYKDRTTGEEKLIETDGVFI 246 (319)
T ss_dssp -----C--------------HHH----HHHHHHTTCC--EECSEEEEEEEESS-SSEEEEEEEETTTCCEEEECCSEEEE
T ss_pred -----C--------------HHH----HHHHhcCCcE--EEcCCeEEEEecCC-ceEEEEEEEEcCCCceEEEecCEEEE
Confidence 0 222 2333467888 99999999998764 3 23455542 122235789999999
Q ss_pred eeCCCCCccc
Q 018550 161 CNGHFSVPRL 170 (354)
Q Consensus 161 AtG~~s~~~~ 170 (354)
|+| ..|+.
T Consensus 247 a~G--~~p~~ 254 (319)
T 3cty_A 247 YVG--LIPQT 254 (319)
T ss_dssp CCC--EEECC
T ss_pred eeC--CccCh
Confidence 999 55554
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.29 E-value=4.8e-07 Score=84.67 Aligned_cols=42 Identities=33% Similarity=0.484 Sum_probs=38.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t 45 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYT 45 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceee
Confidence 478999999999999999999999999999999999887643
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=5.8e-07 Score=80.47 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=39.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 70 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD 70 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence 468999999999999999999999999999999999998874
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.3e-07 Score=80.87 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=39.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|..|++. |.+|+|+|+++.+||.+..
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~ 49 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS 49 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeee
Confidence 47899999999999999999999 9999999999999998865
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.4e-06 Score=76.60 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=69.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.+.+|+++++.+.+. .
T Consensus 155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~----~-------------------------------------- 192 (335)
T 2a87_A 155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR----A-------------------------------------- 192 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS----S--------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC----c--------------------------------------
Confidence 3689999999999999999999999999999864320 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIl 160 (354)
. ..+. .+..++.+++ +.+++++.++..++ +...+.+.+. ++...++.+|.||+
T Consensus 193 -----~---------------~~~~---~~~~~~~gV~--v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~ 246 (335)
T 2a87_A 193 -----S---------------KIML---DRARNNDKIR--FLTNHTVVAVDGDT-TVTGLRVRDTNTGAETTLPVTGVFV 246 (335)
T ss_dssp -----C---------------TTHH---HHHHHCTTEE--EECSEEEEEEECSS-SCCEEEEEEETTSCCEEECCSCEEE
T ss_pred -----c---------------HHHH---HHHhccCCcE--EEeCceeEEEecCC-cEeEEEEEEcCCCceEEeecCEEEE
Confidence 0 1111 1223446777 88999999998654 3333444431 12235789999999
Q ss_pred eeCCCCCcccCC
Q 018550 161 CNGHFSVPRLAQ 172 (354)
Q Consensus 161 AtG~~s~~~~p~ 172 (354)
|+| ..|....
T Consensus 247 a~G--~~p~~~~ 256 (335)
T 2a87_A 247 AIG--HEPRSGL 256 (335)
T ss_dssp CSC--EEECCTT
T ss_pred ccC--CccChhH
Confidence 999 6665443
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.4e-07 Score=82.37 Aligned_cols=40 Identities=38% Similarity=0.550 Sum_probs=37.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~ 41 (354)
.++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 50 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRV 50 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCce
Confidence 4789999999999999999999999999999999999864
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=6e-06 Score=72.24 Aligned_cols=99 Identities=17% Similarity=0.085 Sum_probs=72.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|+.|+.+|..|++.+.+|+++++.+.+ ..
T Consensus 154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~----~~-------------------------------------- 191 (332)
T 3lzw_A 154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKF----RA-------------------------------------- 191 (332)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSC----SS--------------------------------------
T ss_pred CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcC----Cc--------------------------------------
Confidence 368999999999999999999999999999986532 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIl 160 (354)
. ... .+.+.+.+++ ++.++++.++..++ +...+++.++ .++..++.+|.||+
T Consensus 192 -------------------~-~~~----~~~l~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~ 244 (332)
T 3lzw_A 192 -------------------H-EHS----VENLHASKVN--VLTPFVPAELIGED-KIEQLVLEEVKGDRKEILEIDDLIV 244 (332)
T ss_dssp -------------------C-HHH----HHHHHHSSCE--EETTEEEEEEECSS-SCCEEEEEETTSCCEEEEECSEEEE
T ss_pred -------------------c-HHH----HHHHhcCCeE--EEeCceeeEEecCC-ceEEEEEEecCCCceEEEECCEEEE
Confidence 0 111 1224567888 99999999998765 4556666663 22346889999999
Q ss_pred eeCCCCCcccC
Q 018550 161 CNGHFSVPRLA 171 (354)
Q Consensus 161 AtG~~s~~~~p 171 (354)
|+| ..|..+
T Consensus 245 a~G--~~p~~~ 253 (332)
T 3lzw_A 245 NYG--FVSSLG 253 (332)
T ss_dssp CCC--EECCCG
T ss_pred eec--cCCCch
Confidence 999 555443
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=7.5e-07 Score=81.80 Aligned_cols=40 Identities=40% Similarity=0.663 Sum_probs=37.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
++|+|||||++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 45 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW 45 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence 6899999999999999999999999999999988987763
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.4e-07 Score=80.60 Aligned_cols=35 Identities=34% Similarity=0.581 Sum_probs=31.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|+|||||++|+++|..|+++|++|+|||+.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 45799999999999999999999999999999965
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=9.6e-07 Score=81.69 Aligned_cols=40 Identities=38% Similarity=0.620 Sum_probs=36.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~ 41 (354)
.++|+|||||++|+++|..|++.|++|+|+|+++.+||.+
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~ 55 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV 55 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence 4789999999999999999999999999999999998754
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=98.19 E-value=1e-06 Score=78.58 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=38.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 42 (367)
T 1i8t_A 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (367)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence 368999999999999999999999999999999999988754
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1e-05 Score=70.23 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=31.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+
T Consensus 152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~ 185 (314)
T 4a5l_A 152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD 185 (314)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred CCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence 3689999999999999999999999999999753
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-06 Score=78.03 Aligned_cols=42 Identities=29% Similarity=0.652 Sum_probs=39.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 44 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD 44 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence 369999999999999999999999999999999999988754
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=77.93 Aligned_cols=100 Identities=24% Similarity=0.198 Sum_probs=72.2
Q ss_pred CeEEEEc--CChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 3 RHVAVIG--AGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 3 ~~vvIIG--~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++|+||| +|+.|+.+|..|++.|.+|+++++.+.+......
T Consensus 524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~------------------------------------- 566 (690)
T 3k30_A 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNN------------------------------------- 566 (690)
T ss_dssp SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGG-------------------------------------
T ss_pred CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccccc-------------------------------------
Confidence 5799999 9999999999999999999999987543211110
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
..+...+.+.+++.|++ ++.+++|+++.. +...+.... .+...++.+|.||+
T Consensus 567 ----------------------~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~---~~~~v~~~~-~~~~~~i~aD~VV~ 618 (690)
T 3k30_A 567 ----------------------TFEVNRIQRRLIENGVA--RVTDHAVVAVGA---GGVTVRDTY-ASIERELECDAVVM 618 (690)
T ss_dssp ----------------------GTCHHHHHHHHHHTTCE--EEESEEEEEEET---TEEEEEETT-TCCEEEEECSEEEE
T ss_pred ----------------------chhHHHHHHHHHHCCCE--EEcCcEEEEEEC---CeEEEEEcc-CCeEEEEECCEEEE
Confidence 12235566677778999 999999999974 333444321 11235789999999
Q ss_pred eeCCCCCcc
Q 018550 161 CNGHFSVPR 169 (354)
Q Consensus 161 AtG~~s~~~ 169 (354)
|+| ..|.
T Consensus 619 A~G--~~p~ 625 (690)
T 3k30_A 619 VTA--RLPR 625 (690)
T ss_dssp ESC--EEEC
T ss_pred CCC--CCCC
Confidence 999 5554
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-06 Score=81.32 Aligned_cols=40 Identities=40% Similarity=0.618 Sum_probs=37.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~ 41 (354)
.++|+|||||++|+++|..|++.|++|+|+|+++.+||.+
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~ 52 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKL 52 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 3789999999999999999999999999999999998764
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-06 Score=80.26 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=37.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~ 42 (354)
+++|+|||||++|+++|+.|++.| .+|+|+|+++.+||.+.
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~ 46 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVA 46 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCC
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeE
Confidence 479999999999999999999999 99999999888887543
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-06 Score=81.02 Aligned_cols=40 Identities=30% Similarity=0.518 Sum_probs=37.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
++|+|||||++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~ 79 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSW 79 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcce
Confidence 6899999999999999999999999999999999987653
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-06 Score=79.49 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=38.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~~gg~~~~ 43 (354)
+++|+|||||++|+++|..|++.| .+|+|+|+++.+||.+..
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence 478999999999999999999998 799999999999988765
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-05 Score=73.70 Aligned_cols=98 Identities=21% Similarity=0.281 Sum_probs=70.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+. .
T Consensus 355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~----~-------------------------------------- 392 (521)
T 1hyu_A 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK----A-------------------------------------- 392 (521)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC----S--------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC----c--------------------------------------
Confidence 3689999999999999999999999999999865320 0
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcE-EEEEeec-CCceEEEEeCEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW-KVKSRKK-DDVVEEETFDAV 158 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~g-~~~~~~~~~d~v 158 (354)
. ..+.+.+.+ .+++ ++++++++++..++ +.. .+.+.+. ++...++.+|.|
T Consensus 393 ---------------------~---~~l~~~l~~~~gV~--v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~v 445 (521)
T 1hyu_A 393 ---------------------D---QVLQDKVRSLKNVD--IILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHSVALAGI 445 (521)
T ss_dssp ---------------------C---HHHHHHHTTCTTEE--EECSEEEEEEEECS-SSEEEEEEEETTTCCEEEEECSEE
T ss_pred ---------------------C---HHHHHHHhcCCCcE--EEeCCEEEEEEcCC-CcEEEEEEEeCCCCceEEEEcCEE
Confidence 0 123333334 4677 89999999998754 443 4666552 233457899999
Q ss_pred EEeeCCCCCccc
Q 018550 159 VVCNGHFSVPRL 170 (354)
Q Consensus 159 IlAtG~~s~~~~ 170 (354)
++|+| ..|+.
T Consensus 446 i~a~G--~~pn~ 455 (521)
T 1hyu_A 446 FVQIG--LLPNT 455 (521)
T ss_dssp EECCC--EEESC
T ss_pred EECcC--CCCCc
Confidence 99999 55554
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2.4e-06 Score=79.47 Aligned_cols=41 Identities=41% Similarity=0.603 Sum_probs=37.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
+++|+|||||++|+++|..|++.|.+|+|+|+++.+||.+.
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~ 73 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR 73 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcee
Confidence 47899999999999999999999999999999999998653
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.05 E-value=3e-06 Score=73.65 Aligned_cols=87 Identities=10% Similarity=0.111 Sum_probs=57.5
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccc------ccc-------------------CCCCC-CeEEecceeE
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADET------HEK-------------------QPGYD-NMWLHSMVER 252 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~------~~~-------------------l~~~~-~~~~~~~v~~ 252 (354)
.|+|||+|+.|+.+|..+++.|.+|+++.+...-.. ... ..+.. .+.....+..
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV 87 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence 599999999999999999999999999987643000 000 01112 2333333333
Q ss_pred EecC-CcEEEccCcEEecCEEEEcccCCCccCcc
Q 018550 253 ANED-GTVVFRNGRVVSADVIMHCTGLTGTSTTT 285 (354)
Q Consensus 253 v~~~-~~v~~~~g~~~~~D~vi~a~G~~~~~p~~ 285 (354)
.... ..+...+++++.+|.+|+|||.+|..|..
T Consensus 88 ~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~i 121 (312)
T 4gcm_A 88 EDKGEYKVINFGNKELTAKAVIIATGAEYKKIGV 121 (312)
T ss_dssp EECSSCEEEECSSCEEEEEEEEECCCEEECCCCC
T ss_pred eeeecceeeccCCeEEEeceeEEcccCccCcCCC
Confidence 3322 22556677899999999999988554443
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=98.02 E-value=4.1e-06 Score=76.40 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=38.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.++|+|||+|++|+++|..|++.|++|+++|+++.+||.+..
T Consensus 6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s 47 (433)
T 1d5t_A 6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS 47 (433)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccc
Confidence 478999999999999999999999999999999999988754
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=6.1e-06 Score=77.64 Aligned_cols=72 Identities=14% Similarity=0.095 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCcceEEeceEEEEEEEeC---CC-cEEEEEeecCCceEEEEeC-EEEEeeCCCCCcccCCCCCCC
Q 018550 104 EVLRYLQNFAREFGVDQVVRLHTEVLNARLVE---SN-KWKVKSRKKDDVVEEETFD-AVVVCNGHFSVPRLAQVPGID 177 (354)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~---~~-~~~v~~~~g~~~~~~~~~d-~vIlAtG~~s~~~~p~~~g~~ 177 (354)
....|+.....+.++. +.+++.|++|..++ ++ ...|...+..+...++.++ -||+|+|+...|.++.+.|+.
T Consensus 228 aa~ayL~p~~~r~NL~--V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIG 304 (583)
T 3qvp_A 228 AAREWLLPNYQRPNLQ--VLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIG 304 (583)
T ss_dssp HHHHHTTTTTTCTTEE--EECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTBS
T ss_pred HHHHHHHHhhcCCCcE--EEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCCC
Confidence 3445555544455666 99999999999873 12 2335444323445678886 699999998888877666543
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=5.8e-06 Score=73.51 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=32.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++||+|||||++|+++|+.|+++|.+|+|+|+..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 4699999999999999999999999999999964
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.98 E-value=4e-06 Score=74.10 Aligned_cols=80 Identities=21% Similarity=0.136 Sum_probs=59.1
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc--------------------------------------cccccC-
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--------------------------------------ETHEKQ- 238 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~--------------------------------------~~~~~l- 238 (354)
.+|+|||+|+.|+.+|..|++.|.+|+++.+.+.. .....+
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 46999999999999999999999999999987520 000000
Q ss_pred ---CCCC-CeEEecceeEEecCCc----EEEccCcEEecCEEEEcccC
Q 018550 239 ---PGYD-NMWLHSMVERANEDGT----VVFRNGRVVSADVIMHCTGL 278 (354)
Q Consensus 239 ---~~~~-~~~~~~~v~~v~~~~~----v~~~~g~~~~~D~vi~a~G~ 278 (354)
++.+ +++.++.|+.+..++. |.+.++ ++.+|.||+|+|.
T Consensus 84 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~ 130 (357)
T 4a9w_A 84 QYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGT 130 (357)
T ss_dssp HHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCS
T ss_pred HHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCC
Confidence 1122 6778889999875443 444455 8999999999995
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.96 E-value=5.8e-06 Score=75.57 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=37.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
+||+|||+|++|+++|..|++.|.+|+++|+++.+||.+.
T Consensus 21 ~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~ 60 (475)
T 3p1w_A 21 YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETA 60 (475)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCcc
Confidence 6899999999999999999999999999999999987654
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=9e-06 Score=76.29 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=64.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------cc-----------------------cc---------
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DE-----------------------TH--------- 235 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~-----------------------~~--------- 235 (354)
.+|+|||+|++|+.+|..|++.|.+|+++.+.+. .. ..
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei 101 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI 101 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence 5799999999999999999999999999998542 00 00
Q ss_pred ----cc-CCCCC---CeEEecceeEEecC-C----cEEEccCcEEecCEEEEccc--CCCccCcc
Q 018550 236 ----EK-QPGYD---NMWLHSMVERANED-G----TVVFRNGRVVSADVIMHCTG--LTGTSTTT 285 (354)
Q Consensus 236 ----~~-l~~~~---~~~~~~~v~~v~~~-~----~v~~~~g~~~~~D~vi~a~G--~~~~~p~~ 285 (354)
.. +.+.+ .+++++.|+++..+ . .|++.+|+++.+|.||+||| ..|..|..
T Consensus 102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~i 166 (549)
T 4ap3_A 102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAF 166 (549)
T ss_dssp HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCC
T ss_pred HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCC
Confidence 00 01112 57888899988732 2 37788888999999999999 45444443
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.93 E-value=7.2e-06 Score=78.84 Aligned_cols=40 Identities=33% Similarity=0.544 Sum_probs=37.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~ 41 (354)
.++|+|||+|++|+++|..|++.|++|+|+|+.+.+||.+
T Consensus 107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~ 146 (662)
T 2z3y_A 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV 146 (662)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTC
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 4789999999999999999999999999999998888754
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.5e-05 Score=74.64 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=64.5
Q ss_pred CeEEEEccCCCHHHHHHHHh-ccCCEEEEEEecCC----------cc---------------------------------
Q 018550 198 QVVILIGHYASGLDIKRDLA-GFAKEVHIASRSVA----------DE--------------------------------- 233 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~-~~g~~v~~~~r~~~----------~~--------------------------------- 233 (354)
.+|+|||+|++|+.+|..|+ +.|.+|+++.+.+. +.
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e 88 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE 88 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence 46999999999999999999 89999999998642 00
Q ss_pred ccc---c-CCCCC---CeEEecceeEEecC-C----cEEEccCcEEecCEEEEcccC--CCccCcc
Q 018550 234 THE---K-QPGYD---NMWLHSMVERANED-G----TVVFRNGRVVSADVIMHCTGL--TGTSTTT 285 (354)
Q Consensus 234 ~~~---~-l~~~~---~~~~~~~v~~v~~~-~----~v~~~~g~~~~~D~vi~a~G~--~~~~p~~ 285 (354)
... . +.+.+ .+++++.|+++..+ + .|++++|+++.+|.||+|+|. .|..|..
T Consensus 89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~i 154 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNL 154 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCC
T ss_pred HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCC
Confidence 000 0 01112 57888999988733 2 277788888999999999994 5444443
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1e-05 Score=71.30 Aligned_cols=36 Identities=36% Similarity=0.505 Sum_probs=33.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~ 37 (354)
+++|+|||||+||+.+|..|++.|.+|+|+|+++..
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~ 36 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKR 36 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTS
T ss_pred CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCc
Confidence 478999999999999999999999999999997644
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.91 E-value=8.6e-06 Score=79.87 Aligned_cols=40 Identities=33% Similarity=0.544 Sum_probs=37.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~ 41 (354)
.++|+|||+|++|+++|..|++.|++|+|+|+.+.+||.+
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~ 317 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV 317 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCce
Confidence 4689999999999999999999999999999998888753
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=7.6e-06 Score=75.55 Aligned_cols=41 Identities=27% Similarity=0.504 Sum_probs=37.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~ 42 (354)
.++|+|||||++|+++|..|++.|+ +|+|+|+++.+||.+.
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~ 45 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH 45 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCcee
Confidence 4789999999999999999999999 8999999988887654
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.7e-05 Score=75.69 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=69.9
Q ss_pred CeEEEEc--CChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 3 RHVAVIG--AGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 3 ~~vvIIG--~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
++|+||| +|..|+.+|..|++.|.+|+++++.+ +.......
T Consensus 529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~------------------------------------ 571 (729)
T 1o94_A 529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFT------------------------------------ 571 (729)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHT------------------------------------
T ss_pred CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccc------------------------------------
Confidence 6899999 99999999999999999999999865 32110000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEe--ecC-----------
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR--KKD----------- 147 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~--~g~----------- 147 (354)
.. ...+.+.+++.|++ +++++++.++.. +...+... ++.
T Consensus 572 ----------------------~~-~~~~~~~l~~~GV~--i~~~~~v~~i~~---~~v~~~~~~~~~~~~~~~~~~~~~ 623 (729)
T 1o94_A 572 ----------------------LE-YPNMMRRLHELHVE--ELGDHFCSRIEP---GRMEIYNIWGDGSKRTYRGPGVSP 623 (729)
T ss_dssp ----------------------TC-HHHHHHHHHHTTCE--EECSEEEEEEET---TEEEEEETTCSCSCCCCCCTTSCS
T ss_pred ----------------------cc-HHHHHHHHHhCCCE--EEcCcEEEEEEC---CeEEEEEecCCceEEecccccccc
Confidence 00 23455666778998 999999999863 33334321 111
Q ss_pred ----CceEEEEeCEEEEeeCCCCCccc
Q 018550 148 ----DVVEEETFDAVVVCNGHFSVPRL 170 (354)
Q Consensus 148 ----~~~~~~~~d~vIlAtG~~s~~~~ 170 (354)
+.++.+.+|.||+|+| ..|..
T Consensus 624 ~~~~~~~~~i~aD~Vv~a~G--~~p~~ 648 (729)
T 1o94_A 624 RDANTSHRWIEFDSLVLVTG--RHSEC 648 (729)
T ss_dssp SCCCCCCEEEECSEEEEESC--EEECC
T ss_pred cccCCcceeeeCCEEEECCC--CCCCh
Confidence 1123489999999999 55553
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=4.7e-05 Score=69.68 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=31.5
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCC--EEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~--~v~~~~r~~ 230 (354)
..+|+|||+|++|+.+|..|++.|. +|+++.+.+
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~ 41 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 41 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence 4689999999999999999999998 999999875
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.6e-05 Score=71.17 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=63.8
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCcc--------------cc---------------------------
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE--------------TH--------------------------- 235 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~--------------~~--------------------------- 235 (354)
..+|+|||+|++|+.+|..|++.|.+|+++++.+... .+
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 4689999999999999999999999999999865310 00
Q ss_pred ------------------------ccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCC
Q 018550 236 ------------------------EKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 236 ------------------------~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
+.+.+.+ +++.++.|+++..++.|++.+|+++.+|+||.|+|..+
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG~~s 160 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGVGS 160 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCCTTC
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCCccH
Confidence 0001122 67777888888753357778888999999999999983
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=9.9e-06 Score=75.96 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=62.8
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---------------------------cc-----c-cccC------
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---------------------------DE-----T-HEKQ------ 238 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---------------------------~~-----~-~~~l------ 238 (354)
.+|+|||+|++|+.+|..|++.|.+|+++.+.+. +. . ....
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei 89 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM 89 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence 5799999999999999999999999999998742 00 0 0000
Q ss_pred --------CC---CCCeEEecceeEEecCC-----cEEEccCcEEecCEEEEccc--CCCccCcc
Q 018550 239 --------PG---YDNMWLHSMVERANEDG-----TVVFRNGRVVSADVIMHCTG--LTGTSTTT 285 (354)
Q Consensus 239 --------~~---~~~~~~~~~v~~v~~~~-----~v~~~~g~~~~~D~vi~a~G--~~~~~p~~ 285 (354)
.+ ...+.+++.|+.+..+. .|++++|+++.+|.||+|+| ..|..|..
T Consensus 90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~i 154 (545)
T 3uox_A 90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDI 154 (545)
T ss_dssp HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCC
T ss_pred HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCC
Confidence 01 12577888898887322 27778888999999999999 55544443
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1.9e-05 Score=71.38 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=63.4
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC------------------------------------------c-
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------------------------------------------D- 232 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~------------------------------------------~- 232 (354)
+..+|+|||+|++|+-+|..|++.|.+|+++.+.+. .
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS 101 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence 446799999999999999999999999999998763 0
Q ss_pred c-cc-----------------------------ccCCCCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCC
Q 018550 233 E-TH-----------------------------EKQPGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 233 ~-~~-----------------------------~~l~~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~ 279 (354)
. .. +.+.+ .+++.++.|+.+..++. |++.+|+++.+|+||.|.|..
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~ 180 (407)
T 3rp8_A 102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR-DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSH 180 (407)
T ss_dssp CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG-GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTT
T ss_pred CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc-CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcC
Confidence 0 00 00011 45778888888874432 667888999999999999987
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=5.7e-05 Score=75.68 Aligned_cols=95 Identities=17% Similarity=0.146 Sum_probs=70.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++|+|||+|+.|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~-------------------------------------------- 320 (965)
T 2gag_A 285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS-------------------------------------------- 320 (965)
T ss_dssp SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC--------------------------------------------
T ss_pred CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc--------------------------------------------
Confidence 689999999999999999999999999999864220
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe-CCCcEEEEEee--c---CCceEEEEeC
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV-ESNKWKVKSRK--K---DDVVEEETFD 156 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~~v~~~~--g---~~~~~~~~~d 156 (354)
.. .+.+++.|++ +++++.+.++..+ ++....+++.+ . .+...++.+|
T Consensus 321 --------------------~~-----~~~l~~~GV~--v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D 373 (965)
T 2gag_A 321 --------------------AA-----AAQAVADGVQ--VISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEAD 373 (965)
T ss_dssp --------------------HH-----HHHHHHTTCC--EEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECS
T ss_pred --------------------hh-----HHHHHhCCeE--EEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcC
Confidence 11 3345677999 9999999999874 31322455443 1 1113589999
Q ss_pred EEEEeeCCCCCccc
Q 018550 157 AVVVCNGHFSVPRL 170 (354)
Q Consensus 157 ~vIlAtG~~s~~~~ 170 (354)
.||+|+| ..|+.
T Consensus 374 ~Vv~a~G--~~P~~ 385 (965)
T 2gag_A 374 VLAVAGG--FNPVV 385 (965)
T ss_dssp EEEEECC--EEECC
T ss_pred EEEECCC--cCcCh
Confidence 9999999 55553
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.81 E-value=6.9e-06 Score=74.33 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~ 60 (417)
T 3v76_A 28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR 60 (417)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 579999999999999999999999999999865
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=4.7e-05 Score=73.41 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcc
Q 018550 106 LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 106 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
..++.+.+++.|++ ++.++++.++.. +..++. .+| +..++.+|.||+|+| ..|+
T Consensus 576 ~~~~~~~l~~~GV~--v~~~~~v~~i~~---~~v~~~-~~G--~~~~i~~D~Vi~a~G--~~p~ 629 (671)
T 1ps9_A 576 GWIHRTTLLSRGVK--MIPGVSYQKIDD---DGLHVV-ING--ETQVLAVDNVVICAG--QEPN 629 (671)
T ss_dssp HHHHHHHHHHTTCE--EECSCEEEEEET---TEEEEE-ETT--EEEEECCSEEEECCC--EEEC
T ss_pred HHHHHHHHHhcCCE--EEeCcEEEEEeC---CeEEEe-cCC--eEEEEeCCEEEECCC--cccc
Confidence 34556677778998 999999999862 444443 333 235799999999999 5554
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=7.3e-05 Score=68.48 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=30.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--------------------CC-cEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--------------------GH-TVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--------------------g~-~v~lie~~~~ 36 (354)
.++|+|||+|..|+.+|..|++. +. +|+++++...
T Consensus 147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~ 202 (456)
T 1lqt_A 147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 202 (456)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence 36899999999999999999974 54 8999998653
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=97.77 E-value=2.4e-05 Score=67.01 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=60.6
Q ss_pred CeEEEEccCCCHHHHHHHHhcc-CCEEEEEEecCCc--------------------------------------------
Q 018550 198 QVVILIGHYASGLDIKRDLAGF-AKEVHIASRSVAD-------------------------------------------- 232 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~-g~~v~~~~r~~~~-------------------------------------------- 232 (354)
..|+|||+|++|+.+|..|++. |.+|+++.+.+..
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 4699999999999999999997 9999999987521
Q ss_pred ----cccccCCC-CC-CeEEecceeEEec-CCc---EEEc---------cC-----cEEecCEEEEcccCCC
Q 018550 233 ----ETHEKQPG-YD-NMWLHSMVERANE-DGT---VVFR---------NG-----RVVSADVIMHCTGLTG 280 (354)
Q Consensus 233 ----~~~~~l~~-~~-~~~~~~~v~~v~~-~~~---v~~~---------~g-----~~~~~D~vi~a~G~~~ 280 (354)
.+.+++.+ .+ +++.++.|+++.. ++. |.+. ++ .++.+|.||.|+|..+
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s 191 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG 191 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCch
Confidence 01111222 34 7888899999873 332 3442 22 5789999999999763
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.76 E-value=5.6e-05 Score=69.18 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=30.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||||..|+.+|..+.+.|. +|+++++.+
T Consensus 265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~ 298 (456)
T 2vdc_G 265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD 298 (456)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence 689999999999999999999998 599998864
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00017 Score=66.10 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHH--------------------HcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELL--------------------REGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~--------------------~~g~-~v~lie~~~ 35 (354)
++|+|||+|..|+.+|..|+ +.+. +|+|+++..
T Consensus 146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~ 199 (460)
T 1cjc_A 146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 199 (460)
T ss_dssp SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCC
Confidence 68999999999999999999 5687 799999865
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00013 Score=67.12 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~ 230 (464)
T 2xve_A 197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT 230 (464)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence 4789999999999999999999999999999864
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=2.2e-05 Score=72.83 Aligned_cols=85 Identities=12% Similarity=0.109 Sum_probs=63.6
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc-------------------------------------------
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD------------------------------------------- 232 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~------------------------------------------- 232 (354)
...+|+|||||++|+.+|..|++.|.+|+++.+.+..
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~ 170 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQL 170 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHH
Confidence 4578999999999999999999999999999987530
Q ss_pred cccccCCCCC-CeEEecceeEEecC---Cc---EEE--c-cC--cEEecCEEEEcccCCC
Q 018550 233 ETHEKQPGYD-NMWLHSMVERANED---GT---VVF--R-NG--RVVSADVIMHCTGLTG 280 (354)
Q Consensus 233 ~~~~~l~~~~-~~~~~~~v~~v~~~---~~---v~~--~-~g--~~~~~D~vi~a~G~~~ 280 (354)
.+.+.+.+.+ +++.++.|+++..+ +. |++ . +| .++.+|+||.|+|..+
T Consensus 171 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S 230 (497)
T 2bry_A 171 LLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKF 230 (497)
T ss_dssp HHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTC
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCc
Confidence 0001112233 78899999999753 21 555 3 55 4689999999999984
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=97.73 E-value=6.3e-05 Score=67.66 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=62.4
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc---------------cccccC-----------------C-----
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---------------ETHEKQ-----------------P----- 239 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~---------------~~~~~l-----------------~----- 239 (354)
..+|+|||+|++|+-+|..|++.|.+|+++++.+.. +.++++ .
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 367999999999999999999999999999986530 000000 0
Q ss_pred -------------------------CCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCC
Q 018550 240 -------------------------GYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 240 -------------------------~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~ 279 (354)
...+++.++.|+++..++. |++.+|+++.+|+||.|.|..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 152 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGA 152 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTT
T ss_pred ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcc
Confidence 0125667778888874432 667788899999999999987
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.3e-05 Score=73.20 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=64.1
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc--------------------------------------------
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------------------------------------------- 232 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-------------------------------------------- 232 (354)
...|+|||+|++|+.+|..|++.|.+|+++.+.+..
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 467999999999999999999999999999986310
Q ss_pred --------------------------------------cccccCCCC-CCeEEecceeEEecC-Cc---EEEccCcEEec
Q 018550 233 --------------------------------------ETHEKQPGY-DNMWLHSMVERANED-GT---VVFRNGRVVSA 269 (354)
Q Consensus 233 --------------------------------------~~~~~l~~~-~~~~~~~~v~~v~~~-~~---v~~~~g~~~~~ 269 (354)
.+.+.+++. .+++.++.|+++..+ +. |++.+|+++.+
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~A 266 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKS 266 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEEC
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEEC
Confidence 000001122 378889999998743 32 67788889999
Q ss_pred CEEEEcccCC
Q 018550 270 DVIMHCTGLT 279 (354)
Q Consensus 270 D~vi~a~G~~ 279 (354)
|.||+|+|..
T Consensus 267 d~VVlA~G~~ 276 (549)
T 3nlc_A 267 RHVVLAVGHS 276 (549)
T ss_dssp SCEEECCCTT
T ss_pred CEEEECCCCC
Confidence 9999999998
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.72 E-value=4e-05 Score=69.09 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=30.7
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-+|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~ 34 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS 34 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 379999999999999999999999999999865
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.71 E-value=3.4e-05 Score=69.41 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=61.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc------------------------------------------c--
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD------------------------------------------E-- 233 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~------------------------------------------~-- 233 (354)
.+|+|||+|++|+-+|..|++.|.+|+++++.+.. .
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~ 86 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL 86 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence 46999999999999999999999999999986420 0
Q ss_pred c--------------------------cccCCCC-C-CeEEecceeEEecCC-----cEEEccCcEEecCEEEEcccCC
Q 018550 234 T--------------------------HEKQPGY-D-NMWLHSMVERANEDG-----TVVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 234 ~--------------------------~~~l~~~-~-~~~~~~~v~~v~~~~-----~v~~~~g~~~~~D~vi~a~G~~ 279 (354)
. .+.+.+. + +++.++.|+++..++ .|++.+|+++.+|+||.|+|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~ 165 (399)
T 2x3n_A 87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIA 165 (399)
T ss_dssp EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTT
T ss_pred EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCC
Confidence 0 0001222 3 677888888887432 3556788889999999999987
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=6.5e-05 Score=70.51 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=60.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------cc--------cc---------------ccC------
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DE--------TH---------------EKQ------ 238 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~--------~~---------------~~l------ 238 (354)
.+|+|||+|++|+.+|..|++.|.+|+++.+.+. +. .+ ...
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i 96 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 96 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence 4699999999999999999999999999998642 00 00 000
Q ss_pred --------CCC---CCeEEecceeEEecCC---c--EEEccCcEEecCEEEEcccC
Q 018550 239 --------PGY---DNMWLHSMVERANEDG---T--VVFRNGRVVSADVIMHCTGL 278 (354)
Q Consensus 239 --------~~~---~~~~~~~~v~~v~~~~---~--v~~~~g~~~~~D~vi~a~G~ 278 (354)
.+. ..+++++.|.++..++ . |++++|+++.+|.||+|+|.
T Consensus 97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~ 152 (542)
T 1w4x_A 97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ 152 (542)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence 011 2577788898887322 2 67778888999999999995
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00038 Score=70.20 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||||..|+.+|..|.+.|. +|+++++.+
T Consensus 333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~ 366 (1025)
T 1gte_A 333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 366 (1025)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence 589999999999999999999997 899999864
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00019 Score=64.59 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=63.2
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc--------------c---cccc----------------------
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--------------E---THEK---------------------- 237 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~--------------~---~~~~---------------------- 237 (354)
..+|+|||+|++|+-+|..|++.|.+|+++++.+.. . .+++
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 105 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK 105 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence 468999999999999999999999999999986520 0 0000
Q ss_pred ------C-------------------------CCCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCCC
Q 018550 238 ------Q-------------------------PGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLTG 280 (354)
Q Consensus 238 ------l-------------------------~~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~~ 280 (354)
. .....++.++.|+++..++. |++.+|+++.+|+||.|.|...
T Consensus 106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 182 (398)
T 2xdo_A 106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMS 182 (398)
T ss_dssp SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTC
T ss_pred CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcch
Confidence 0 00135778888988875432 6677888899999999999873
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=97.56 E-value=2.8e-05 Score=70.50 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 469999999999999999999999999999875
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=3.4e-05 Score=73.82 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=33.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC--------CcEEEEeeCC-Cc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG--------HTVVVYEKGE-QV 37 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g--------~~v~lie~~~-~~ 37 (354)
++|+|||||++|+++|+.|.+.| ++|+|+|+++ .+
T Consensus 57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 68999999999999999999998 9999999998 88
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=8.7e-05 Score=65.28 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=30.0
Q ss_pred CeEEEEccCCCHHHHHHHHhc---cCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAG---FAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~---~g~~v~~~~r~~ 230 (354)
.+|+|||+|.+|+-+|..|++ .|.+|+++++++
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~ 37 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD 37 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence 369999999999999999999 899999998764
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00011 Score=68.91 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=32.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
.+|++|||+|++|+.+|..|++.|.+|+|+|++..
T Consensus 7 ~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 7 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 41 (546)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred ceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 47999999999999999999999999999999753
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0001 Score=67.43 Aligned_cols=33 Identities=27% Similarity=0.188 Sum_probs=30.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~ 59 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN 59 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 469999999999999999999999999999865
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=68.61 Aligned_cols=35 Identities=26% Similarity=0.504 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-cCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~-~g~~v~lie~~~~ 36 (354)
.+|+||||+|++|+.+|..|++ .+++|+|+|+++.
T Consensus 17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~ 52 (526)
T 3t37_A 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE 52 (526)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence 4799999999999999999998 6789999999754
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00017 Score=68.25 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
...|+|||||++|+-+|..|++.|.+|+++.+.+
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~ 56 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA 56 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence 4689999999999999999999999999999874
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00012 Score=65.95 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=30.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+.+|..+++.|.+|+++.+.+
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~ 37 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 359999999999999999999999999999865
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=65.30 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 35 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 359999999999999999999999999999865
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00027 Score=66.76 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=39.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
|++||+|||+|..|..+|..|++.|.+|.++|+++..||.|.
T Consensus 7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~ 48 (650)
T 1vg0_A 7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA 48 (650)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccc
Confidence 368999999999999999999999999999999999998754
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00035 Score=67.39 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=30.9
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
...|+|||+|.+|+-+|..|++.|.+|+++.+.
T Consensus 272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~ 304 (676)
T 3ps9_A 272 KREAAIIGGGIASALLSLALLRRGWQVTLYCAD 304 (676)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 368999999999999999999999999999985
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=63.24 Aligned_cols=33 Identities=36% Similarity=0.369 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 469999999999999999999999999999874
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=67.49 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=32.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~ 36 (354)
.+|+||||||.||+.+|..|++.+ .+|+|+|+++.
T Consensus 6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp EEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 479999999999999999999987 79999999765
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00016 Score=67.69 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=31.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~ 37 (354)
+|++|||+|.||+.+|..|++ |.+|+|+|++...
T Consensus 27 yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~ 60 (536)
T 1ju2_A 27 YDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP 60 (536)
T ss_dssp EEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred ccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence 689999999999999999999 9999999998654
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00018 Score=67.01 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence 469999999999999999999999999999876
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00038 Score=65.78 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=30.1
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
-.|+|||+|+.|+++|..+++.|.+|.++++.
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~ 60 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHN 60 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeec
Confidence 46999999999999999999999999999976
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00045 Score=65.07 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=30.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
-.|+|||+|+.|+++|..+++.|.+|.++++.
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~ 59 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLN 59 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEec
Confidence 46999999999999999999999999999986
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00038 Score=64.61 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=33.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~g 38 (354)
.++++|||+|++|+.+|..|++.|.+|+|+|++...+
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN 41 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 4789999999999999999999999999999976443
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00023 Score=65.88 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=58.1
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc-----------------------cccccCCCCC-CeEEecceeEE
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-----------------------ETHEKQPGYD-NMWLHSMVERA 253 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-----------------------~~~~~l~~~~-~~~~~~~v~~v 253 (354)
.+|+|||+|+.|+.+|..|++. .+|+++.+.+.. ...+.+ ..+ +++.++.+..+
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i 186 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV 186 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence 4699999999999999999999 999999987630 001122 222 45566677666
Q ss_pred ecCCc-EEE---ccCc--EEecCEEEEcccCCCccC
Q 018550 254 NEDGT-VVF---RNGR--VVSADVIMHCTGLTGTST 283 (354)
Q Consensus 254 ~~~~~-v~~---~~g~--~~~~D~vi~a~G~~~~~p 283 (354)
..++. +.+ ++++ ++.+|.+++|||..+..|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~ 222 (493)
T 1y56_A 187 FDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTM 222 (493)
T ss_dssp EECSSSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred EcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence 54432 322 3443 688999999999884433
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00045 Score=64.04 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=31.4
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
...|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~ 45 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLP 45 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3579999999999999999999999999999865
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0002 Score=67.49 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~ 82 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLV 82 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 469999999999999999999999999999865
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00026 Score=64.84 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=30.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~ 39 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP 39 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 359999999999999999999999999999865
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00023 Score=63.34 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=30.0
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+.|+|||+|.+|+-+|..|+ .|.+|+++.+.+
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~ 41 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA 41 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence 467999999999999999999 599999999874
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00054 Score=63.65 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=32.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
.++++|||+|++|+.+|..|++.|.+|+++|++..
T Consensus 11 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 11 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 47899999999999999999999999999999754
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00041 Score=62.59 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCE-EEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKE-VHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~-v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+ |+++.+.+
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 38 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS 38 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 5799999999999999999999999 99999865
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00056 Score=63.42 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=31.3
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
...|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~ 44 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLV 44 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3569999999999999999999999999999865
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0003 Score=65.99 Aligned_cols=36 Identities=36% Similarity=0.394 Sum_probs=32.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-cCCcEEEEeeCCCc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQV 37 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~-~g~~v~lie~~~~~ 37 (354)
.+|++|||||.||+.+|..|++ .+.+|+|+|+++..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 5899999999999999999998 68999999997544
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00029 Score=62.89 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=30.0
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~ 37 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP 37 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 38999999999999999999999999999865
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00081 Score=64.97 Aligned_cols=34 Identities=12% Similarity=-0.031 Sum_probs=31.2
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
...|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~ 297 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADA 297 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3679999999999999999999999999999853
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0011 Score=49.91 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=31.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+.+|+|||+|..|..+|..|.+.|++|+++|+++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 5689999999999999999999999999999864
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00057 Score=64.08 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=32.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCCCc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQV 37 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~~~ 37 (354)
.+|++|||+|++|+.+|..|++. +.+|+++|++...
T Consensus 13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD 49 (546)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence 47999999999999999999998 8999999997543
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00083 Score=63.50 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=32.2
Q ss_pred CeEEEEcCChHHHHHHHHHHH-cCCcEEEEeeCCCc
Q 018550 3 RHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQV 37 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~-~g~~v~lie~~~~~ 37 (354)
+|++|||+|++|+.+|..|++ .|.+|+++|++...
T Consensus 25 ~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence 699999999999999999999 79999999997543
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.001 Score=61.73 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhcc-CCEEEEEEecCC
Q 018550 198 QVVILIGHYASGLDIKRDLAGF-AKEVHIASRSVA 231 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~-g~~v~~~~r~~~ 231 (354)
-.|+|||+|.+|+-+|..|++. |.+|+++++++.
T Consensus 11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~ 45 (513)
T 4gde_A 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET 45 (513)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 3599999999999999999875 899999998873
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0011 Score=62.57 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
-.|+|||+|..|+++|..+++.|.+|.++++.
T Consensus 22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~ 53 (641)
T 3cp8_A 22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSD 53 (641)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEec
Confidence 57999999999999999999999999999986
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0013 Score=47.65 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=31.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~ 35 (354)
|+++|+|+|+|..|..++..|.+.| ++|+++++++
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 3578999999999999999999999 8999999853
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0015 Score=49.12 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3589999999999999999999999999999864
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00067 Score=63.51 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~ 38 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRP 38 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 579999999999999999999999999999875
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0017 Score=49.80 Aligned_cols=34 Identities=29% Similarity=0.540 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|..|..+|..|.+.|++|+++|+++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3689999999999999999999999999999864
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00072 Score=55.03 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=32.8
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..+++|+|||+|.+|...+..|.+.|.+|+++.+..
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~ 64 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV 64 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 367999999999999999999999999999998754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0028 Score=48.39 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
+++|+|+|+|..|..++..|.+.|++|+++|++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 468999999999999999999999999999985
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0029 Score=47.29 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|||+|..|..+|..|.+.|++|+++|+++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 689999999999999999999999999999853
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0015 Score=61.64 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=30.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~ 154 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP 154 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 369999999999999999999999999999865
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0019 Score=60.54 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=30.7
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~ 59 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTD 59 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 469999999999999999999999999999865
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0033 Score=54.55 Aligned_cols=35 Identities=37% Similarity=0.571 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|+|||+|..|.+.|..|++.|.+|+++++++
T Consensus 1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 1 MSLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp --CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 67899999999999999999999999999999853
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0026 Score=55.39 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhcc--CCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGF--AKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~ 230 (354)
..|+|||+|+.|+-+|..|++. |.+|+++.+.+
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~ 114 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV 114 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4699999999999999999997 99999999875
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.043 Score=50.73 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=29.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~ 35 (354)
.|+|+|||+|.+|+.++..|++. +.+|+++-|.+
T Consensus 246 gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~ 281 (501)
T 4b63_A 246 PYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS 281 (501)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 36899999999999999999876 67899998864
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0041 Score=46.65 Aligned_cols=33 Identities=36% Similarity=0.481 Sum_probs=30.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
+++|+|+|+|..|..++..|.+.|++|+++|++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999999999999999999999999985
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0039 Score=53.90 Aligned_cols=35 Identities=37% Similarity=0.545 Sum_probs=30.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|+|||+|..|.+.|..|++.|.+|+++++++
T Consensus 1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 1 MSLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp ---CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 67899999999999999999999999999999853
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0024 Score=53.64 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=30.1
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|++|+-+|..|++.|.+|+++.+++
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 49999999999999999999999999999865
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0062 Score=48.00 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHc-CCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~-g~~v~lie~~~ 35 (354)
.+|+|||+|..|..+|..|.+. |++|+++|+++
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 5799999999999999999999 99999999864
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0047 Score=52.86 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|+|||+|..|.+.|..|++.|.+|+++++..
T Consensus 1 M~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 1 MSLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 67899999999999999999999999999999863
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0053 Score=53.09 Aligned_cols=32 Identities=34% Similarity=0.329 Sum_probs=29.8
Q ss_pred eEEEEccCCCHHHHHHHHhcc--CCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGF--AKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~ 230 (354)
.|+|||+|++|+-+|..|++. |.+|+++.+.+
T Consensus 67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~ 100 (326)
T 2gjc_A 67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 100 (326)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCc
Confidence 699999999999999999998 99999999855
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0062 Score=55.40 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|.|||+|..|+..|..|++.|++|+++|+++
T Consensus 1 M~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 1 MSLDIAVVGIGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 56799999999999999999999999999999864
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0072 Score=49.17 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|||+|..|..+|..|.+.|++|+++|+++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 479999999999999999999999999999864
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.012 Score=47.48 Aligned_cols=35 Identities=29% Similarity=0.551 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
.++|.|||+|..|.+.|..|++.|++|+++++++.
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46899999999999999999999999999998653
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.01 Score=51.06 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=30.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|+|||+|..|.+.|..|+ .|.+|+++++.+
T Consensus 1 M~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 1 MSLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 6789999999999999999999 999999999853
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.011 Score=48.13 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||||..|...+..|.+.|.+|+++++.
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 478999999999999999999999999999874
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.012 Score=50.49 Aligned_cols=33 Identities=39% Similarity=0.638 Sum_probs=30.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|++.|++|+++|+++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 679999999999999999999999999999863
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.011 Score=50.95 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|.|||+|..|...|..|++.|++|+++++++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 4689999999999999999999999999999853
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.014 Score=51.55 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=32.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
+|+|+|||||..|..+++.+.+.|++++++|.++.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 57899999999999999999999999999997643
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.013 Score=49.70 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=31.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 689999999999999999999999999999864
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.015 Score=50.49 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=31.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
+++|+|||+|..|..+|..|+..|+ +|+++|.++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 4689999999999999999999998 999999864
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.013 Score=50.37 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=30.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.+|+|||+|..|...|..++.+|++|+++|..+
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999999754
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0082 Score=54.54 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=32.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
.++|+|||.|.+|+++|+.|.++|++|+++|....
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~ 39 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence 47899999999999999999999999999998653
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.013 Score=53.40 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||.|.+|+++|..|.++|++|++.|+.+
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 3789999999999999999999999999999854
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.016 Score=49.91 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=31.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
|+++|+|||+|..|..+|..|+..|. ++.++|.++
T Consensus 1 M~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 1 MRKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 66899999999999999999999997 999999753
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.014 Score=50.85 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=31.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
|..+|.|||+|..|.+.|..|++.|++|+++++.
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~ 46 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARR 46 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5679999999999999999999999999999985
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.013 Score=49.30 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||||..|...+..|.+.|.+|+++++.
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 478999999999999999999999999999985
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.012 Score=50.40 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=29.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|.+||-|..|...|..|.+.|++|+++|+.+
T Consensus 4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~ 38 (297)
T 4gbj_A 4 MSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA 38 (297)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred CCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 67789999999999999999999999999999865
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.018 Score=49.01 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=31.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
++|.|||+|..|...|..|++.|++|+++++++.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~ 34 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence 3799999999999999999999999999998653
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.014 Score=49.54 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|+|.|+|..|..++..|.+.|++|+++.+.+
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 56899999999999999999999999999999864
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.02 Score=47.47 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||+|..|.++|..|++.|++|+++++++
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 4789999999999999999999999999999864
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.018 Score=49.88 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
+++|+|||+|..|..+|..|++.|+ +|+++|++.
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4689999999999999999999998 999999853
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.021 Score=50.72 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=31.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
..+|+|||+|.+|+.+|..|...|.+|+++|+.+
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 223 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP 223 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3589999999999999999999999999999865
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.019 Score=49.27 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|.|||.|..|...|..|++.|++|+++++++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4689999999999999999999999999999864
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.013 Score=50.15 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=32.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
+++|.|||.|..|...|..|++.|++|+++|+++.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 45899999999999999999999999999998754
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.02 Score=49.79 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=30.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||+|..|.++|..|+..|+ +|+|+|.++
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence 589999999999999999999998 999999864
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.017 Score=49.96 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~ 35 (354)
|+++|.|||.|..|...|..|++.| ++|+++++++
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4578999999999999999999999 9999999864
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.02 Score=49.45 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||+|..|..+|..|++.|+ +|+++|+++
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence 689999999999999999999998 999999864
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.023 Score=47.10 Aligned_cols=35 Identities=14% Similarity=0.373 Sum_probs=32.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCC----cEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGH----TVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~----~v~lie~~~ 35 (354)
|+++|.|||+|..|.+.|..|.+.|+ +|.++++++
T Consensus 1 M~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~ 39 (247)
T 3gt0_A 1 MDKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT 39 (247)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence 67899999999999999999999998 999999854
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.022 Score=49.66 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
++|+|||+|..|.+.|..|++.|++|+++++.
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 68999999999999999999999999999974
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.017 Score=52.69 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=52.2
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--ccccccCCCCC-CeEEecceeEEecCCcEEEccCcE-Ee-c
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRV-VS-A 269 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~-~~-~ 269 (354)
..+++|.|||.|.+|+-+|..|+++|.+|++..+.+. ....+.|++.+ +++.+.... .. -. +
T Consensus 7 ~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~-------------~~~~~~~ 73 (451)
T 3lk7_A 7 FENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPL-------------ELLDEDF 73 (451)
T ss_dssp TTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCG-------------GGGGSCE
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChH-------------HhhcCCC
Confidence 4679999999999999999999999999999987642 11222232222 222221100 01 12 8
Q ss_pred CEEEEcccCCCccCccc
Q 018550 270 DVIMHCTGLTGTSTTTL 286 (354)
Q Consensus 270 D~vi~a~G~~~~~p~~~ 286 (354)
|+||.+.|..++.|...
T Consensus 74 d~vv~spgi~~~~p~~~ 90 (451)
T 3lk7_A 74 CYMIKNPGIPYNNPMVK 90 (451)
T ss_dssp EEEEECTTSCTTSHHHH
T ss_pred CEEEECCcCCCCChhHH
Confidence 99999999986555433
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.023 Score=48.96 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|.|||.|..|...|..|++.|++|+++++++
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 54 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL 54 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4689999999999999999999999999999864
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.022 Score=52.01 Aligned_cols=35 Identities=14% Similarity=0.381 Sum_probs=32.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-CC-cEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-GH-TVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-g~-~v~lie~~~~ 36 (354)
.++|.|||+|..|+..|..|++. |+ +|+++|+++.
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 36899999999999999999999 99 9999998764
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.021 Score=50.29 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
..+|+|||+|.+|..+|..|...|.+|+++|+.+
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.021 Score=52.28 Aligned_cols=34 Identities=32% Similarity=0.561 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||+|..|+..|..|++.|++|+++|+++
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4789999999999999999999999999999854
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.021 Score=50.18 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|.|||+|..|.+.|..|++.|++|+++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~ 62 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES 62 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3689999999999999999999999999999864
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.023 Score=48.36 Aligned_cols=33 Identities=33% Similarity=0.425 Sum_probs=30.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||+|..|...|..|+ .|++|+++|+.+
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~ 44 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE 44 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence 478999999999999999999 999999999864
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.018 Score=50.07 Aligned_cols=76 Identities=9% Similarity=-0.041 Sum_probs=50.8
Q ss_pred CCeEEEEccCCCHHH-HHHHHhccCCEEEEEEecCCccccccCCCCC-CeEEecceeEEecCCcEEEccCcEE---ecCE
Q 018550 197 DQVVILIGHYASGLD-IKRDLAGFAKEVHIASRSVADETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVV---SADV 271 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e-~a~~l~~~g~~v~~~~r~~~~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~---~~D~ 271 (354)
.++|.|||.|.+|+- +|..|.++|.+|++..+.......++|++.+ .++.... ...+ .+|+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~--------------~~~l~~~~~d~ 69 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFD--------------AAQLDEFKADV 69 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCC--------------GGGGGSCCCSE
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCC--------------HHHcCCCCCCE
Confidence 478999999999996 8899999999999998765322223333222 2221110 0112 4899
Q ss_pred EEEcccCCCccCccc
Q 018550 272 IMHCTGLTGTSTTTL 286 (354)
Q Consensus 272 vi~a~G~~~~~p~~~ 286 (354)
||.+.|..++.|...
T Consensus 70 vV~Spgi~~~~p~~~ 84 (326)
T 3eag_A 70 YVIGNVAKRGMDVVE 84 (326)
T ss_dssp EEECTTCCTTCHHHH
T ss_pred EEECCCcCCCCHHHH
Confidence 999999996555443
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.021 Score=48.79 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=30.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|.|||+|..|...|..|.+.|++|.++++++
T Consensus 4 M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 38 (299)
T 1vpd_A 4 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 38 (299)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred ccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45689999999999999999999999999999853
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.02 Score=50.82 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcC-------CcEEEEeeCCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKGEQ 36 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g-------~~v~lie~~~~ 36 (354)
|+++|.|||+|..|.+.|..|++.| ++|+++++++.
T Consensus 20 ~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~ 62 (375)
T 1yj8_A 20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF 62 (375)
T ss_dssp SCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence 3468999999999999999999999 99999998654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.024 Score=43.17 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=32.7
Q ss_pred CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 193 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
....+++++|+|+|.+|..++..|.+.|.+|+++.+++
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 33456899999999999999999999999999998865
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.026 Score=47.94 Aligned_cols=34 Identities=21% Similarity=0.512 Sum_probs=31.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||.|..|...|..|++.|++|+++++++
T Consensus 1 s~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pef_A 1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP 34 (287)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 3689999999999999999999999999999864
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.031 Score=45.27 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=30.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|.+.|++|.+++++.
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999999853
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.015 Score=52.69 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=31.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 679999999999999999999999999999876
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.011 Score=44.43 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=30.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|..|...+..|.+.|.+|+++++..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4689999999999999999999999999999853
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.014 Score=47.45 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=30.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEE-EeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVV-YEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~l-ie~~ 34 (354)
+++|.|||+|..|.+.|..|.+.|++|++ ++++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~ 56 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRG 56 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence 46899999999999999999999999998 7765
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.034 Score=47.24 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=31.2
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|.|||+ |..|...|..|.+.|++|+++++++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~ 45 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP 45 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 468999999 9999999999999999999999853
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.023 Score=48.29 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||.|..|...|..|++.|++|+++++++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999999864
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.032 Score=49.03 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=30.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|++.|++|+++++.+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 37 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 37 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 689999999999999999999999999999853
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.034 Score=48.10 Aligned_cols=32 Identities=41% Similarity=0.579 Sum_probs=29.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
+++|+|||+|..|.+.|..|++.|++|+++ ++
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence 578999999999999999999999999999 64
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.034 Score=50.35 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=31.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|++.|++|+++|+++
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 87 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE 87 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence 689999999999999999999999999999865
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.037 Score=48.04 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=30.8
Q ss_pred CCeEEEEcCChHHHH-HHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLV-VGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~-~a~~l~~~g~~v~lie~~~ 35 (354)
+++|.|||.|.+|++ +|..|.++|++|++.|+.+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 478999999999996 7889999999999999864
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.018 Score=50.95 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=30.7
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+.|+|||+|..|+++|..+++.|.+|.++.+++
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 469999999999999999999999999999865
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.034 Score=46.22 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
++|+|||+|-.|..+|..|++.|. +++++|++
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d 64 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 64 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 689999999999999999999998 89999985
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.035 Score=51.10 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=32.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|..+|.|||.|..|..+|..|+++|++|+++++.+
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~ 43 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ 43 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 56789999999999999999999999999999864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.038 Score=47.61 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=31.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
.++|.|||.|..|.+.|..|.+.|+ +|+++|+++
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~ 68 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 68 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence 3689999999999999999999999 999999864
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.036 Score=48.71 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=30.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
..+|||+|+|.+|+.+|..|...|. +|+++|+.
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~ 221 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF 221 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 3589999999999999999999999 99999985
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.034 Score=47.57 Aligned_cols=34 Identities=15% Similarity=0.412 Sum_probs=31.1
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG-~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.||| +|..|.+.|..|++.|++|.++++++
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 45899999 99999999999999999999998754
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.034 Score=48.10 Aligned_cols=33 Identities=24% Similarity=0.563 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||.|..|...|..|++.|++|+++++.+
T Consensus 32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 589999999999999999999999999999864
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.037 Score=47.50 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=30.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
++|+|||+|..|..+|..|+..|+ +|.++|.++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 479999999999999999999998 999999853
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.039 Score=47.39 Aligned_cols=34 Identities=32% Similarity=0.611 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||.|..|...|..|.+.|++|+++++++
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.015 Score=53.00 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|+|+|-.|..+|..|.+.|++|+++|+++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 4789999999999999999999999999999864
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.023 Score=51.18 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=30.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~ 33 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA 33 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 369999999999999999999999999999865
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.038 Score=49.37 Aligned_cols=34 Identities=32% Similarity=0.346 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
..+|+|||+|.+|+.++..|...|.+|+++|+..
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3689999999999999999999999999999854
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.044 Score=47.38 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
+++|+|||+|..|..+|..|+..|+ +|.++|.++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 3689999999999999999999998 999999754
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.037 Score=50.55 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|++.|++|+++|+++
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~ 70 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP 70 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999999864
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.04 Score=49.91 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=32.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~ 37 (354)
-+|.|||.|..|+..|..|++.|++|+++|+++.-
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k 43 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK 43 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 47999999999999999999999999999997643
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.022 Score=50.54 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=30.6
Q ss_pred eEEEEccCCCHHHHHHHHhcc--CCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGF--AKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~~ 231 (354)
+|+|||+|++|+-+|..|++. |.+|+++++.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~ 36 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE 36 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 699999999999999999999 999999998753
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.023 Score=50.64 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~ 37 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT 37 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 369999999999999999999999999999854
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.042 Score=48.22 Aligned_cols=33 Identities=36% Similarity=0.375 Sum_probs=30.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
..+|+|+|+|.+|..+|..|...|. +|+++|+.
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 3689999999999999999999998 89999985
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.024 Score=52.35 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=32.8
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
...+|+|||+|.+|+.+|..|++.|.+|+++++++.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~ 67 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER 67 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 357899999999999999999999999999998764
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.055 Score=45.77 Aligned_cols=34 Identities=24% Similarity=0.498 Sum_probs=31.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|+|.|+|..|..++..|.+.|++|+++.+..
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3689999999999999999999999999999864
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.048 Score=48.47 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
..+|+|||+|.+|+.++..+...|.+|+++|+.+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 205 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.045 Score=49.08 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=32.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
+.+|+|||.|..|..+|..|.+.|++|+++|+++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~ 38 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD 38 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 35799999999999999999999999999998643
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.036 Score=46.48 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=33.1
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.+++|+|||+|.+|...+..|.+.|++|+++.....
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~ 47 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH 47 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 579999999999999999999999999999997653
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.023 Score=50.38 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=30.8
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999999999999999999999999999865
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.022 Score=50.32 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=30.1
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+|.|||+|..|.+.|..|++.|++|+++++++
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~ 48 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 48 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 89999999999999999999999999999853
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.042 Score=49.86 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=49.8
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccccccCCCCC-CeEEecceeEEecCCcEEEccCcEE-ecCEE
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVV-SADVI 272 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~-~~D~v 272 (354)
+.+++|+|||.|.+|+..|..|+++|.+|+.+..+........+. .+ ++..++.. ...+ .+|.|
T Consensus 3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~-------------~~~~~~~d~v 68 (439)
T 2x5o_A 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLN-------------DEWLMAADLI 68 (439)
T ss_dssp CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCC-------------HHHHHTCSEE
T ss_pred CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCc-------------HHHhccCCEE
Confidence 356889999999999999999999999999988765322112222 22 22222210 0111 48999
Q ss_pred EEcccCCCccC
Q 018550 273 MHCTGLTGTST 283 (354)
Q Consensus 273 i~a~G~~~~~p 283 (354)
|++.|..++.|
T Consensus 69 V~s~gi~~~~p 79 (439)
T 2x5o_A 69 VASPGIALAHP 79 (439)
T ss_dssp EECTTSCTTCH
T ss_pred EeCCCCCCCCH
Confidence 99999985444
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.038 Score=50.11 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=30.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|++.|++|+++|+++
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 379999999999999999999999999999853
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.043 Score=49.31 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|+..|..|++ |++|+++|+++
T Consensus 37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~ 68 (432)
T 3pid_A 37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ 68 (432)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence 589999999999999999998 99999999864
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.034 Score=47.90 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=29.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc-----C-CcEEEEee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE-----G-HTVVVYEK 33 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~-----g-~~v~lie~ 33 (354)
+++|.|||+|..|...|..|++. | ++|+++++
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 35899999999999999999999 9 99999987
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.045 Score=49.27 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+.+|.|||.|+.|+..|..+++.|++|+.+|-++
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 4689999999999999999999999999999754
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.062 Score=44.99 Aligned_cols=34 Identities=24% Similarity=0.529 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++++|||+|-+|.+++..|.+.|.+|+++.|..
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~ 151 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS 151 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.045 Score=47.55 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=29.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEee
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~ 33 (354)
++|.|||+|..|...|..|++.|++|+++++
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence 3799999999999999999999999999998
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.062 Score=46.39 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
.++|+|||+|..|.++|..|+..++ +++++|..+
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~ 41 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE 41 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 3589999999999999999999998 999999864
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.026 Score=50.56 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=29.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHH-cCCcEEEEe
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLR-EGHTVVVYE 32 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~-~g~~v~lie 32 (354)
|+++|+|||+|..|.+.|..|++ .|++|++++
T Consensus 1 ~~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~ 33 (404)
T 3c7a_A 1 MTVKVCVCGGGNGAHTLSGLAASRDGVEVRVLT 33 (404)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence 56789999999999999999988 599999998
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.034 Score=48.93 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=30.1
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
..|+|||+|.+|+-+|..|++.|.+|+++.+.
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 57999999999999999999999999999975
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.026 Score=50.04 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~ 36 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 369999999999999999999999999999754
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.057 Score=46.45 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~ 35 (354)
++|+|||+|..|..+|..|++. +.+|+++|+++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4799999999999999999985 78999999864
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.02 Score=50.48 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~ 35 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM 35 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 369999999999999999999999999999864
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.055 Score=43.54 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=30.2
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG-~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+||| +|..|...|..|.+.|++|+++++++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3799999 99999999999999999999999853
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.041 Score=50.49 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=30.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~ 35 (354)
+++|.|||+|..|+..|..|++. |++|+++|+++
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 36899999999999999999998 78999999753
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=94.02 E-value=0.062 Score=47.30 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|+|+|.+|.+++..|...|.+|+++++.+
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 689999999999999999999999999999853
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.068 Score=42.50 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=30.8
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|+|| |..|..++..|.+.|++|+++.+.+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 68999999 9999999999999999999999853
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.061 Score=46.28 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=30.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
++|+|||+|..|..+|..|+..|+ +++++|..
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 589999999999999999999999 99999985
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.059 Score=46.52 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
++|+|||+|..|..+|..|+..+. ++.++|.+.
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 589999999999999999999987 899999753
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.056 Score=49.51 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|++.|++|+++|+++
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~ 38 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA 38 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 589999999999999999999999999999864
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.052 Score=46.66 Aligned_cols=33 Identities=33% Similarity=0.660 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~ 35 (354)
++|+|||+|..|.++|..|++.| .+|+++|++.
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~ 36 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence 58999999999999999999999 6999999853
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.058 Score=47.35 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=31.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||.|..|...|..|++.|++|+++++.+
T Consensus 23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 689999999999999999999999999999864
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.068 Score=45.20 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC---cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH---TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~---~v~lie~~~ 35 (354)
+++|.|||+|..|.+.|..|.+.|+ +|+++++++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~ 39 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL 39 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence 4789999999999999999999998 999999864
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.035 Score=50.81 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=31.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCC--EEEEEEecCC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAK--EVHIASRSVA 231 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~--~v~~~~r~~~ 231 (354)
++|+|||+|.+|+-+|..|++.|. +|+++++++.
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~ 38 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSER 38 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCC
Confidence 579999999999999999999998 9999998764
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.04 Score=48.71 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=32.0
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.+.+|+|||+|.+|+-+|..|++.|.+|++++++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~ 76 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN 76 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence 4578999999999999999999999999999988
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.028 Score=49.80 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=30.7
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999999999999999999999999865
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.064 Score=46.22 Aligned_cols=33 Identities=30% Similarity=0.595 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|.+.|++|+++++++
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~ 63 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA 63 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 689999999999999999999999999999854
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.056 Score=46.68 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
++|+|||+|..|.++|..|++.|+ +|+++|+++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~ 35 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 479999999999999999999998 999999853
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.063 Score=44.79 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=30.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC----CcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g----~~v~lie~~~ 35 (354)
++|.|||+|..|.+.|..|.+.| ++|.++++++
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~ 41 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK 41 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Confidence 68999999999999999999999 6999999864
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.062 Score=45.96 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
+++|+|||+|..|...|..|+..|+ ++.|+|..+
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 3689999999999999999999998 999999864
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.083 Score=42.72 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=30.7
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHH-HcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGA-GAAGLVVGHELL-REGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~-G~aG~~~a~~l~-~~g~~v~lie~~~ 35 (354)
|+++|+|.|| |..|.+++..|+ +.|++|+++.+++
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence 3456999995 999999999999 8999999999863
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.072 Score=43.60 Aligned_cols=34 Identities=32% Similarity=0.373 Sum_probs=31.4
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|.|| |..|..++..|.+.|++|+++.|++
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 478999998 9999999999999999999999864
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.07 Score=45.08 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
++|.|||+|..|.+.|..|.+.|+ +|+++++++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~ 36 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 579999999999999999999998 899998853
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.056 Score=46.54 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
++|.|||.|..|...|..|++.|+ +|++++++
T Consensus 25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 689999999999999999999999 99999985
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.092 Score=48.30 Aligned_cols=57 Identities=16% Similarity=0.004 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhC-CcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 103 EEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~-~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
..+.+.+.+.+...+ ++ ++++++|++|...+ +.+.|++.+|. ++.+|+||+|+|...
T Consensus 255 ~~l~~~l~~~l~~~g~~~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~~~ad~vI~a~~~~~ 312 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLG--YVFGCPVRSVVNER-DAARVTARDGR----EFVAKRVVCTIPLNV 312 (495)
T ss_dssp HHHHHHHHHHHHTTTCEE--EESSCCEEEEEECS-SSEEEEETTCC----EEEEEEEEECCCGGG
T ss_pred HHHHHHHHHHhhhcCceE--EEeCCEEEEEEEcC-CEEEEEECCCC----EEEcCEEEECCCHHH
Confidence 455555555555555 66 89999999999876 77888887664 789999999999643
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=93.70 E-value=0.078 Score=44.60 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++++|+|+|-+|.++|..|++.|.+|++++|+
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~ 151 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 151 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence 368999999999999999999999999999885
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.033 Score=50.21 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=29.9
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~ 34 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE 34 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 59999999999999999999999999999854
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.078 Score=45.51 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=31.6
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|+|.|| |..|..++..|.+.|++|+++++..
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 41 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLR 41 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCC
Confidence 578999999 9999999999999999999999864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.078 Score=46.84 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|+|+|..|..+|..|...|.+|+++|+.+
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3689999999999999999999999999999853
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.075 Score=45.52 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=31.3
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 1 ~~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
|+++|+|.|| |..|..++..|.+.|++|+++.+.
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 7789999995 999999999999999999999986
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.67 E-value=0.071 Score=44.99 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|.+.|..|.+.|++|+++++++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 33 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 379999999999999999999999999998753
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.084 Score=42.49 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=30.2
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|+|| |..|..++..|.+.|++|+++.|++
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence 46999996 9999999999999999999999864
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.073 Score=48.65 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=32.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
+++|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS 38 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998653
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.087 Score=45.46 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=30.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++|+|||+|..|.++|..|+..+. ++.++|..+
T Consensus 6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~ 39 (321)
T 3p7m_A 6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ 39 (321)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence 689999999999999999999988 999999864
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.048 Score=50.13 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~ 45 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTR 45 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 346899999999999999999999999999998764
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.04 Score=49.58 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.8
Q ss_pred CCeEEEEccCCCHHHHHHHHhccC-CEEEEEEecCC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSVA 231 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~~ 231 (354)
..+|+|||+|.+|+-+|..|++.| .+|+++++++.
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~ 41 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDH 41 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence 467999999999999999999999 89999998764
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.083 Score=46.80 Aligned_cols=34 Identities=35% Similarity=0.341 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|..|..+|..+...|.+|+++|+.+
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI 201 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4689999999999999999999999999999853
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.095 Score=44.58 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=31.1
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
++|+|.|| |+.|..++..|.+.|++|+++.|++.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 57999998 99999999999999999999988654
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.084 Score=45.67 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=30.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
..+|+|||+|-.|..+|..|++.|+ +++++|.+
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 4689999999999999999999998 79999975
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.046 Score=47.98 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=31.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC-------CcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g-------~~v~lie~~~~ 36 (354)
++|.|||+|..|.+.|..|++.| ++|+++++++.
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~ 49 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED 49 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence 58999999999999999999999 89999998653
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.073 Score=44.45 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|.+.| ++|.++++++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~ 34 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA 34 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence 37999999999999999999999 9999999853
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=93.48 E-value=0.028 Score=46.12 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=29.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|+|+|+|..|..+|..|.+.|+ |+++|+++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~ 41 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDEN 41 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence 4689999999999999999999999 99999864
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.075 Score=48.41 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=32.4
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+++|+|||+|.+|...+..|.+.|.+|+++....
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~ 45 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence 56899999999999999999999999999998754
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.086 Score=45.88 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||.|..|.++|..|.+.|++|.++|+++
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 41 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR 41 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.079 Score=45.21 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
.++++|||+|-+|.++|..|.+.|. +|++++|..
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~ 175 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV 175 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 3689999999999999999999998 899999853
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.066 Score=49.07 Aligned_cols=34 Identities=18% Similarity=0.402 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|.|||+|..|..+|..|++.|++|+++++.+
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~ 48 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR 48 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4789999999999999999999999999999863
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.06 Score=45.63 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=29.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|.+ |++|+++++++
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~ 33 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF 33 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 579999999999999999999 99999999854
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.037 Score=49.37 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=30.6
Q ss_pred CeEEEEccCCCHHHHHHHHhc-cC-CEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAG-FA-KEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~-~g-~~v~~~~r~~ 230 (354)
..|+|||+|.+|+-+|..|++ .| .+|+++.+.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 479999999999999999999 89 8999999865
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.074 Score=45.24 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
++|+|||+|..|.++|..|+..+. ++.++|..+
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~ 35 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 479999999999999999999998 899999854
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.072 Score=45.36 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|...|..|.+.|++|+++++++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~ 33 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP 33 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 369999999999999999999999999999864
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.055 Score=48.41 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=29.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|..|+..|..|++ |++|+++|+++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~ 32 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP 32 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence 379999999999999999999 99999999853
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.075 Score=45.36 Aligned_cols=34 Identities=35% Similarity=0.490 Sum_probs=31.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|.|||+|..|...|..|.+.|++|+++++++
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 37 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME 37 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3689999999999999999999999999999853
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.075 Score=48.38 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=31.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||+|..|...+..|.+.|.+|++++++
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~ 44 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence 478999999999999999999999999999975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 354 | ||||
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 8e-28 | |
| d2gv8a2 | 107 | c.3.1.5 (A:181-287) Flavin-dependent monoxygenase | 2e-19 | |
| d1w4xa1 | 298 | c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy | 4e-18 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 4e-13 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 1e-11 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 3e-10 | |
| d2bi7a1 | 314 | c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu | 2e-09 | |
| d2ivda1 | 347 | c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox | 4e-09 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 4e-09 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 4e-09 | |
| d1i8ta1 | 298 | c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu | 5e-09 | |
| d2dw4a2 | 449 | c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist | 6e-09 | |
| d2v5za1 | 383 | c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H | 2e-08 | |
| d1w4xa2 | 235 | c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T | 3e-08 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 5e-08 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 2e-07 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 6e-07 | |
| d1k0ia1 | 292 | c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr | 7e-07 | |
| d1lqta2 | 239 | c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct | 1e-06 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 2e-06 | |
| d1d4ca2 | 322 | c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 ( | 3e-06 | |
| d1qo8a2 | 317 | c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 ( | 4e-06 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 4e-06 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 6e-06 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 7e-06 | |
| d1y0pa2 | 308 | c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 ( | 8e-06 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 9e-06 | |
| d1c0pa1 | 268 | c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida | 1e-05 | |
| d1ryia1 | 276 | c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO { | 1e-05 | |
| d2gf3a1 | 281 | c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac | 2e-05 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 2e-05 | |
| d2f5va1 | 379 | c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W | 4e-05 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 7e-05 | |
| d1kifa1 | 246 | c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N | 7e-05 | |
| d3coxa1 | 370 | c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of | 1e-04 | |
| d1n4wa1 | 367 | c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of | 1e-04 | |
| d2bs2a2 | 336 | c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo | 3e-04 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 3e-04 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 3e-04 | |
| d1neka2 | 330 | c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase | 7e-04 | |
| d1pj5a2 | 305 | c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox | 0.001 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 0.001 | |
| d3c96a1 | 288 | c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps | 0.001 | |
| d1ps9a3 | 179 | c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu | 0.002 | |
| d1f0ya2 | 192 | c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA | 0.002 | |
| d2gmha1 | 380 | c.3.1.2 (A:4-236,A:336-482) Electron transfer flav | 0.002 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 0.002 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 0.003 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.003 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 0.004 |
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 109 bits (272), Expect = 8e-28
Identities = 65/291 (22%), Positives = 110/291 (37%), Gaps = 51/291 (17%)
Query: 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSET------------- 47
R +A+IGAG +GLV LL E V ++E+ GG W YTS
Sbjct: 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 64
Query: 48 ESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR 107
++P+ S LY+ L+ N P ELMG+ F ++P +
Sbjct: 65 TTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKP-------QTLQFPHRHTIQE 117
Query: 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWK--VKSRKKDDVVEEETFDAVVVCNGHF 165
Y + +A+ ++L T+VL+ + W K K + ++ FDAV +CNGH+
Sbjct: 118 YQRIYAQPLLPF--IKLATDVLDIE-KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY 174
Query: 166 SVPRLAQVPGI-----------------DSWPGKQMHSHNYRIPNP---FQDQVVILIGH 205
VP + + D ++ H + IP+P F + ++
Sbjct: 175 EVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPF 234
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQPGYDNMWLHSMVER 252
S ++ + + S+ DE G +NM+ +
Sbjct: 235 PTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMYHSLDYPK 285
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 80.0 bits (197), Expect = 2e-19
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 173 VPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228
+ G+D + PG +HS +R P F + V+++G +S D+ R L AK S
Sbjct: 4 IKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSL 63
Query: 229 SVADETHEKQPGYDNMWLHSMVERANEDG-TVVFRNGRVVSA-DVIMHC 275
+++ + + + + + G+V+S D +++C
Sbjct: 64 L-----GGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC 107
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 81.4 bits (200), Expect = 4e-18
Identities = 42/194 (21%), Positives = 65/194 (33%), Gaps = 30/194 (15%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
V V+GAG +GL + L G +V V E VGG W + NRYP
Sbjct: 10 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW-------------NRYPGARC 56
Query: 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
+S+ Q + + RY E+LRY+ A +F + +
Sbjct: 57 DIESIEYCYSFSEEVLQEWNWT----------ERYASQPEILRYINFVADKFDLRSGITF 106
Query: 125 HTEVLNARL-VESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPG--IDSWPG 181
HT V A +N W V + D +++ +G S + I
Sbjct: 107 HTTVTAAAFDEATNTWTVDTNHGDR----IRARYLIMASGQLSDALTGALFKIDIRGVGN 162
Query: 182 KQMHSHNYRIPNPF 195
+ P +
Sbjct: 163 VALKEKWAAGPRTY 176
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 66.1 bits (160), Expect = 4e-13
Identities = 33/170 (19%), Positives = 72/170 (42%), Gaps = 8/170 (4%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESD--PLGVDPNRYPVH 62
+IGAGAAGL +L + G +V V++ G+++G + + + L V P Y
Sbjct: 7 NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ 66
Query: 63 SS--LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQ 120
+ + +L + + A + + + L G E+++ L++ ++G
Sbjct: 67 NPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKI 126
Query: 121 VVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170
L +EV +++++ + + + ++V G S+P L
Sbjct: 127 --LLRSEVSQVERIQNDEKVRFVLQVNS--TQWQCKNLIVATGGLSMPGL 172
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 61.6 bits (148), Expect = 1e-11
Identities = 45/233 (19%), Positives = 76/233 (32%), Gaps = 23/233 (9%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT-----SETESDPLGVDPNRY 59
V VIG G +GL+ EG V++ +KG ++G + + T PL
Sbjct: 5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64
Query: 60 PVHSSLYKSLRVNLPRE--LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG 117
P + S E + F+ + + + V+ L ++ G
Sbjct: 65 PGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLG 124
Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
V E + E+ + K + + + VV+ G SVP+
Sbjct: 125 VKIRTNTPVETI---EYENGQTKAVILQTGE---VLETNHVVIAVGGKSVPQTGSTGDGY 178
Query: 178 SWPGKQMHSHNY--------RIPNPFQDQVVILIGHYASG--LDIKRDLAGFA 220
+W K H+ + NP + G Y G LDI G+
Sbjct: 179 AWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYN 231
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 58.6 bits (140), Expect = 3e-10
Identities = 44/285 (15%), Positives = 84/285 (29%), Gaps = 31/285 (10%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD--PNRYP 60
+HV ++GAG AGL + L GH V V E E+ GG + T E + P R P
Sbjct: 31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG-RVRTYRNEEAGWYANLGPMRLP 89
Query: 61 VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQ 120
+ + L F A + ++ + ++
Sbjct: 90 EKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKS 149
Query: 121 VVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWP 180
+L+ E L K + ++ ++ +S G S
Sbjct: 150 AGQLYEESL--------------GKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPG 195
Query: 181 GKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPG 240
M + + + + H E+ + +
Sbjct: 196 AVDMIGDLLNEDSGYYVSFIESLKHDDIF-----AYEKRFDEIVDGMDKLPTAMYRDIQD 250
Query: 241 YDNMWLHSMVERANEDG---TVVFR----NGRVVSADVIMHCTGL 278
+ ++ V + ++ TVV+ V+AD ++ CT
Sbjct: 251 K--VHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTS 293
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Score = 56.0 bits (134), Expect = 2e-09
Identities = 20/146 (13%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD--PNRYP 60
+ + ++GAG +G V+G +L +GH V + ++ + +GG+ ++E++ + P+ +
Sbjct: 3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFH 62
Query: 61 VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQ 120
+ + + + +V+ + + + Q F++ D+
Sbjct: 63 TDNETVWNYVNKHAEMMPYV-------NRVKATVNGQVFSLPINLHTINQFFSKTCSPDE 115
Query: 121 VVRLHTEVLNARLVESNKWKVKSRKK 146
L E ++ + + ++ ++ +
Sbjct: 116 ARALIAEKGDSTIADPQTFEEEALRF 141
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Score = 55.1 bits (131), Expect = 4e-09
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
VAV+G G +GL V H L G V+ E ++GG + T + PN +
Sbjct: 3 VAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG-AVGTHALAGYLVEQGPNSFLDREP 61
Query: 65 LYKSL 69
++L
Sbjct: 62 ATRAL 66
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.8 bits (130), Expect = 4e-09
Identities = 30/287 (10%), Positives = 55/287 (19%), Gaps = 22/287 (7%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
V V+G G ++ + G V+ ++ GG + Y
Sbjct: 9 VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS--------ITPLEELYKRFQL 60
Query: 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
L P V + Y L + +
Sbjct: 61 LEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYK 120
Query: 125 HTEVLNARLVES------------NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ 172
L + V + ++D E D
Sbjct: 121 VPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLG 180
Query: 173 VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE--VHIASRSV 230
ID + + + I Y+ L + +
Sbjct: 181 QDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGF 240
Query: 231 ADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
A + Y + N V G V ++
Sbjct: 241 ARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPS 287
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 54.8 bits (130), Expect = 4e-09
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN----R 58
+ VAVIGAG +GL ++L G V V+E + GG + + + N
Sbjct: 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG-KLRSVSQDGLIWDEGANTMTES 60
Query: 59 YPVHSSLYKSLRVNLPRELMGFQAYPFVARNY 90
+ L SL + ++ Q ++ARN
Sbjct: 61 EGDVTFLIDSLGLREKQQFPLSQNKRYIARNG 92
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 54.4 bits (130), Expect = 5e-09
Identities = 36/238 (15%), Positives = 78/238 (32%), Gaps = 16/238 (6%)
Query: 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP 60
M+ ++G+G G V +EL + V+V EK +GG YT + E G+ ++Y
Sbjct: 1 MYD-YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG-NAYTEDCE----GIQIHKYG 54
Query: 61 VH-SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
H + +L+ F + L P + +
Sbjct: 55 AHIFHTNDKYIWDYVNDLVEFNRFTNSPLAIY-KDKLFNLPFNMNTFHQMWGVKDPQEAQ 113
Query: 120 QVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW 179
++ + ++ E+ + + S +D+ + + G+ + ++
Sbjct: 114 NIINAQKKKYGDKVPENLEEQAISLVGEDLYQA-------LIKGYTEKQWGRSAKELPAF 166
Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
K++ + N + I I++ L G ++ I D K
Sbjct: 167 IIKRIPV-RFTFDNNYFSDRYQGIPVGGYTKLIEKMLEGVDVKLGIDFLKDKDSLASK 223
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (130), Expect = 6e-09
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR----- 58
V +IG+G +GL +L G V + E ++VGG + T + +
Sbjct: 7 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG-RVATFRKGNYVADLGAMVVTGLG 65
Query: 59 YPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF 116
+ + K + + L + Y + D +L + +
Sbjct: 66 GNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQL 123
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 2e-08
Identities = 40/281 (14%), Positives = 66/281 (23%), Gaps = 26/281 (9%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD------PNR 58
V V+G G +G+ L G VVV E ++VGG YT + VD
Sbjct: 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG-RTYTLRNQ-KVKYVDLGGSYVGPT 59
Query: 59 YPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGV 118
L K L + + + V + NF R
Sbjct: 60 QNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDD 119
Query: 119 DQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDS 178
A L E D + E+ + + V
Sbjct: 120 MGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALW 179
Query: 179 WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238
+ + SG +R + V +
Sbjct: 180 FLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERP---------- 229
Query: 239 PGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLT 279
+++ E+ V N + A ++ T
Sbjct: 230 --------VIYIDQTRENVLVETLNHEMYEAKYVISAIPPT 262
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 51.7 bits (122), Expect = 3e-08
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Query: 167 VPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI 225
VP+L PG+ + G H+ N+ P F Q V +IG +SG+ + +A A E+ +
Sbjct: 1 VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV 60
Query: 226 ASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRN 263
R+ + D +L + +R E
Sbjct: 61 FQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNT 98
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 51.9 bits (122), Expect = 5e-08
Identities = 26/281 (9%), Positives = 69/281 (24%), Gaps = 24/281 (8%)
Query: 4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR---- 58
V V+GAG +G+ L G +++ E + +GG ++ + + + N
Sbjct: 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG-RMHKTNFAGINVELGANWVEGV 60
Query: 59 -YPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG 117
+ ++ + L Y+ + ++ + +
Sbjct: 61 NGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGE 120
Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
+ + ++ + + D PR+ +
Sbjct: 121 KLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTV 180
Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
+ + ++ ++
Sbjct: 181 PLATFSDFGDDVYFVADQRGYEAVVYYLA-----------------GQYLKTDDKSGKIV 223
Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGL 278
P + ++ + TV + V SAD +M L
Sbjct: 224 DPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL 264
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.1 bits (116), Expect = 2e-07
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 4 HVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIY 43
+ V+G+G AG LL+ V +YEK G +
Sbjct: 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF 44
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 6e-07
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41
V V+G G ++ L +G V+ +K + GG
Sbjct: 8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEA 44
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Score = 47.6 bits (112), Expect = 7e-07
Identities = 35/216 (16%), Positives = 61/216 (28%), Gaps = 15/216 (6%)
Query: 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN--- 57
M VA+IGAG +GL++G L + G V+ E+ ++
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDY------VLGRIRAGVLEQGMVD 54
Query: 58 ---RYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR 114
V + + V+ E+ + G EV R L
Sbjct: 55 LLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEARE 114
Query: 115 EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVP 174
G V + L + + ++D D + C+G + R +
Sbjct: 115 ACGATTVYQAAEVRL---HDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPA 171
Query: 175 GIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGL 210
+ I P + + L S L
Sbjct: 172 ERMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 207
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 47.0 bits (110), Expect = 1e-06
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHT-------VVVYEKGEQVGGSWIY 43
++A++G+G + LL+ T V + E G
Sbjct: 4 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS 50
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 46.8 bits (110), Expect = 2e-06
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 5 VAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIY 43
V V+GAG+AGL +E+ + V + E+ GG
Sbjct: 36 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL 75
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Score = 46.1 bits (108), Expect = 3e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45
V +IG+G AGL G V++ EK GG+ +
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAA 66
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 45.7 bits (107), Expect = 4e-06
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45
V V+GAG+AG + G V++ +K GG+ + ++
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISA 62
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 45.4 bits (106), Expect = 4e-06
Identities = 41/273 (15%), Positives = 79/273 (28%), Gaps = 21/273 (7%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
+ VIG G+ G+ R V + EK +GG+ + P
Sbjct: 4 LIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNV------------GCVPKKIM 50
Query: 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
+ ++ + + N V+ R Y QN +++
Sbjct: 51 FNAASVHDILENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTA 110
Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQM 184
N L++ K E +++ G+ V R +
Sbjct: 111 SFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVE 170
Query: 185 HSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNM 244
++NY + + Q V YA G D K I ++ +E++
Sbjct: 171 TNNNYIVVDENQRTSV--NNIYAVG-----DCCMVKKSKEIEDLNLLKLYNEERYLNKKE 223
Query: 245 WLHSMVERANEDGTVVFRNGRVVSADVIMHCTG 277
+ + + V GR++ AD +
Sbjct: 224 NVTEDIFYNVQLTPVAINAGRLL-ADRLFLKKT 255
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.9 bits (105), Expect = 6e-06
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 5 VAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
V ++GAG++GL + + R V + E GG + S +
Sbjct: 53 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMV 102
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (104), Expect = 7e-06
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES 49
V +IG G AG V + + G EK ++GG+ + S
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPS 52
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 44.6 bits (104), Expect = 8e-06
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
V V+G+G AG G V++ EK +GG+
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 54
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 44.0 bits (103), Expect = 9e-06
Identities = 14/55 (25%), Positives = 21/55 (38%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY 59
V +IG G G V + + G EK +GG+ + S L + Y
Sbjct: 6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 60
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Score = 44.3 bits (103), Expect = 1e-05
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
+ V V+G+G GL L R+G++V + + S
Sbjct: 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS 44
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Score = 44.0 bits (102), Expect = 1e-05
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41
VIG G G + + L +E ++E G G +
Sbjct: 7 AVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTT 43
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
V V+GAG+ G+ G++L ++G ++ + + +
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTN 41
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
V V+G G G EG V + E+ + +GG + S L
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKAL 56
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Score = 42.7 bits (99), Expect = 4e-05
Identities = 16/96 (16%), Positives = 32/96 (33%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
V ++G+G G EL+ G+ V +++ GE G I + + + +++
Sbjct: 7 VVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQ 66
Query: 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYP 100
L+ P + V P
Sbjct: 67 GQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNP 102
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 41.6 bits (96), Expect = 7e-05
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41
+AV+G +GL L G V VYE+ Q +
Sbjct: 7 IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGF 43
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 41.4 bits (96), Expect = 7e-05
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
V VIGAG GL + H+V+ +
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA 36
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Score = 41.4 bits (96), Expect = 1e-04
Identities = 10/55 (18%), Positives = 15/55 (27%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY 59
VIG+G G V L + G + E G + +
Sbjct: 10 ALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMW 64
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 3/99 (3%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG---VDPNRYPV 61
VIG G V L G ++ E G+ + +
Sbjct: 5 AVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRT 64
Query: 62 HSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYP 100
+ L L +++ + A NY+
Sbjct: 65 EAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRG 103
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Score = 40.1 bits (92), Expect = 3e-04
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
VIG G AGL ++G + +V
Sbjct: 8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH 43
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 39.0 bits (89), Expect = 3e-04
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 5 VAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIY 43
+A++GAG A + L R G++ + ++EK E VGG
Sbjct: 7 IALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS 46
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 39.1 bits (90), Expect = 3e-04
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44
IG G+ G+ + G + E ++GG+ +
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNV 43
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Score = 38.7 bits (89), Expect = 7e-04
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
VIGAG AG+ ++ + G T + K +
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVS 48
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Score = 38.2 bits (87), Expect = 0.001
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 5 VAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGS 40
+ +IGAG G + EL+ G + + V ++G
Sbjct: 4 IVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPG 40
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 37.5 bits (86), Expect = 0.001
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44
V+GAG G V + G V + EKG +GG +
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCLNV 44
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Score = 37.8 bits (86), Expect = 0.001
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVG 38
+ + GAG GL L + G V + E ++
Sbjct: 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 38
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Score = 36.7 bits (84), Expect = 0.002
Identities = 16/71 (22%), Positives = 30/71 (42%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
+++AV+GAG AGL GH V +++ ++GG + + + RY
Sbjct: 44 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRR 103
Query: 63 SSLYKSLRVNL 73
+ + L
Sbjct: 104 MIEVTGVTLKL 114
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
+ +HV VIG G G + GHTVV+ ++ E + E +
Sbjct: 3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKV 54
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Score = 37.1 bits (85), Expect = 0.002
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 5 VAVIGAGAAGLVVGHELLR------EGHTVVVYEKGEQVGG 39
V ++GAG AGL L + + V + EK +G
Sbjct: 35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGA 75
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 36.6 bits (83), Expect = 0.002
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41
V VIGAG G V + + G + EK + G
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT 42
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 36.5 bits (83), Expect = 0.003
Identities = 33/231 (14%), Positives = 59/231 (25%), Gaps = 38/231 (16%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
IG GAAG L G ++ ++ +GGS + P+ +
Sbjct: 45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHN--------ACVPHHLFSDCA 96
Query: 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
F + E V ++ R G+
Sbjct: 97 AE-------LMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGR-----NGPHGIMNFQSK 144
Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQM 184
L L K + + F A + + P + P
Sbjct: 145 EQLNLEYILNCPAKVIDNHTVEAA---GKVFKAKNLILAVGAGPG---TLDVPEQPRSAE 198
Query: 185 HSHNYRIPNPFQDQVVI-------LIGHYASGLDIKRDLAGFAKEVHIASR 228
+ + + +V++ + YA G DL G E+ A +
Sbjct: 199 LAKILGLDLGPKGEVLVNEYLQTSVPNVYAVG-----DLIGGPMEMFKARK 244
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 36.0 bits (82), Expect = 0.003
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37
+ AV+G G G L +G +V+ ++ Q
Sbjct: 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQR 36
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 36.1 bits (82), Expect = 0.004
Identities = 21/175 (12%), Positives = 52/175 (29%), Gaps = 4/175 (2%)
Query: 5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
+ VIGAG+ GL G V ++ G Y + + + + +
Sbjct: 6 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTG 65
Query: 65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
+ V N++ + + + V ++ F + +
Sbjct: 66 ANYMDTIRESAGFGWELDRESVRPNWKALIAAKN----KAVSGINDSYEGMFADTEGLTF 121
Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW 179
H + + + + V+E + +++ G + +VP +
Sbjct: 122 HQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVPRSQTL 176
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 354 | |||
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.85 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.84 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.76 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.74 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.69 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.68 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.65 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.6 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.58 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.56 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.53 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.5 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.48 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.48 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.48 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.47 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.46 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.46 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.46 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.45 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.45 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.45 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.44 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.44 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.44 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.44 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.43 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.43 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.43 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.42 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.42 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.41 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.41 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.41 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.41 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.4 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.4 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.39 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.36 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.35 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.35 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 99.34 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.34 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.34 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.34 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.33 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.33 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.32 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.31 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.31 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.31 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.31 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.3 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.3 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.28 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.28 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.27 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.27 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.27 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.27 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 99.26 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.25 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.24 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.23 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.23 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 99.23 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.23 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.23 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.22 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.22 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 99.21 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.21 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 99.2 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.2 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.2 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 99.19 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.19 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.19 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.19 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.14 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.11 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 99.08 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 99.07 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 99.07 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 99.06 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.04 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.03 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.02 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.01 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.0 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.99 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.97 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.94 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.93 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.91 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.9 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.83 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.82 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.81 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.8 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.79 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.75 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.74 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.74 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.73 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.73 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.72 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.69 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.66 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 98.65 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.61 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.61 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.59 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.57 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.56 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.46 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.44 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.43 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.42 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.41 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.39 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.38 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.35 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.32 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.32 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.3 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.3 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.29 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.27 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.18 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.17 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.17 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.17 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 98.16 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 98.13 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.1 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.1 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.03 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 97.97 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 97.95 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 97.95 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.93 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 97.93 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 97.92 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.9 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.89 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 97.87 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.86 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.86 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 97.85 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 97.85 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.82 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.75 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 97.73 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.71 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.7 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.63 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.6 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.58 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.53 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.51 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.45 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.44 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.42 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 97.33 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 97.31 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.23 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.21 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.21 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 97.19 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.16 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 97.13 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.96 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.95 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.94 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.88 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.83 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.8 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.8 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.79 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 96.75 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.72 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.62 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.62 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.6 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.6 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.59 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.58 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.56 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.5 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 96.5 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.44 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 96.3 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 96.17 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.17 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.13 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 96.08 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 96.06 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 96.05 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.04 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.04 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.03 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 95.99 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.93 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.89 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.88 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 95.88 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 95.83 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 95.83 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 95.82 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 95.8 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.76 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.76 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 95.74 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.74 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 95.74 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 95.68 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.62 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.54 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 95.53 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 95.53 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 95.49 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.36 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 95.36 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 95.32 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 95.29 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 95.18 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 95.14 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 95.03 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 95.0 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 94.96 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 94.87 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 94.85 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.7 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 94.65 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.55 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.52 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.51 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.46 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.44 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 94.3 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 94.23 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 94.15 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 94.04 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 94.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.92 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 93.8 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 93.76 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.73 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 93.65 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 93.52 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 93.51 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.37 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 93.27 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 93.09 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.99 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 92.96 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.95 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 92.89 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.86 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 92.82 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 92.64 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 92.53 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 92.49 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 92.49 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.47 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 92.46 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 92.38 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 92.3 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 92.19 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 92.08 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.08 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 92.02 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 91.97 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 91.86 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 91.83 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 91.82 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 91.72 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 91.68 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.67 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 91.65 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.5 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 91.49 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 91.49 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 91.48 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 91.22 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 91.11 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 90.89 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 90.88 | |
| d1iowa1 | 96 | D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge | 90.69 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 90.68 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 90.53 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 90.49 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 90.18 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 90.18 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 90.12 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 90.09 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 89.94 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.91 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 89.89 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 89.74 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 89.65 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 89.53 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 89.36 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 89.34 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 89.24 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 89.24 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 89.23 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.22 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 89.12 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 89.02 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 88.81 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 88.77 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 88.77 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 88.47 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 88.47 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 88.2 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 88.15 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 88.09 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 88.03 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 88.01 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 87.92 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 87.91 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 87.82 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 87.74 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 87.47 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 87.41 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 87.35 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 87.31 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 87.29 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 86.98 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 86.97 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 86.96 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 86.94 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 86.86 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 86.75 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 86.72 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 86.62 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 86.6 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 86.59 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 86.58 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 86.44 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 86.42 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 86.29 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 86.17 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 86.15 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 86.09 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 86.03 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 85.7 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 85.65 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 85.63 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 85.54 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 85.53 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 85.51 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 85.46 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 85.25 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 85.06 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 85.02 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 84.69 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 84.67 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 84.61 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 84.6 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 84.38 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 84.38 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 84.22 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 84.15 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 84.14 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 84.11 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 84.01 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 83.91 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 83.9 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 83.85 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 83.67 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 83.52 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 83.51 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 83.42 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 83.42 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 83.2 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 83.06 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 82.88 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 82.8 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 82.78 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 82.75 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 82.48 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 82.39 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 82.35 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 82.3 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 82.23 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 82.22 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 82.21 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 82.19 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 82.15 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 82.14 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 82.12 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 82.05 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 82.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 81.95 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 81.91 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 81.87 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 81.76 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 81.73 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 81.61 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 81.59 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 81.49 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 81.35 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 81.28 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 81.27 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 81.21 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 81.2 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 81.1 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 81.06 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 81.05 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 80.95 | |
| d1o0sa1 | 308 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 80.92 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 80.92 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 80.76 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 80.66 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 80.59 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 80.51 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 80.38 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.36 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 80.29 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 80.23 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 80.2 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 80.18 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 80.17 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 80.09 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 80.09 |
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.85 E-value=9.5e-21 Score=165.93 Aligned_cols=163 Identities=31% Similarity=0.557 Sum_probs=126.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCC--------CCCC-----CCCCCCccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETES--------DPLG-----VDPNRYPVHSSLY 66 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~--------~~~~-----~~~~~~~~~~~~~ 66 (354)
.|+|+|||||++|+++|..|++.+ .+|+||||++.+||.|.++..... .... .........+..|
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y 83 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 83 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence 478999999999999999998876 599999999999999987533220 0000 0011123345677
Q ss_pred ccchhccccccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 67 KSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
..+..+.+...+.+++++++. ....||++.++.+|+..+++.++.. ++++++|++++.++ ++|+|+++++
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~-------~~~~f~~~~~~~~yl~~~~~~~~~~--I~~~t~V~~v~~~~-~~w~Vt~~~~ 153 (335)
T d2gv8a1 84 RDLQTNTPIELMGYCDQSFKP-------QTLQFPHRHTIQEYQRIYAQPLLPF--IKLATDVLDIEKKD-GSWVVTYKGT 153 (335)
T ss_dssp TTCBCSSCHHHHSCTTCCCCT-------TCCSSCBHHHHHHHHHHHHGGGGGG--EECSEEEEEEEEET-TEEEEEEEES
T ss_pred hhhhcCCcHhhhhhhhhcCCc-------ccccCCchHHHHHHHHHHHHHhhhc--ccCceEEEEEEecC-CEEEEEEEec
Confidence 777777787777777766654 4567899999999999999887766 99999999999988 8999998875
Q ss_pred CC--ceEEEEeCEEEEeeCCCCCcccCCCC
Q 018550 147 DD--VVEEETFDAVVVCNGHFSVPRLAQVP 174 (354)
Q Consensus 147 ~~--~~~~~~~d~vIlAtG~~s~~~~p~~~ 174 (354)
.. +.....||+||+|||..+.|..|.+.
T Consensus 154 ~~~~~~~~~~~d~VI~AtG~~s~p~~~~~~ 183 (335)
T d2gv8a1 154 KAGSPISKDIFDAVSICNGHYEVPYTGYLY 183 (335)
T ss_dssp STTCCEEEEEESEEEECCCSSSSBCCCBCC
T ss_pred CCCCeEEEEEeeEEEEcccccccceecccc
Confidence 43 23566899999999999999888654
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.84 E-value=1.2e-21 Score=167.68 Aligned_cols=149 Identities=27% Similarity=0.392 Sum_probs=115.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
.||+|||||++|+++|+.|.+.|++++|||+++.+||+|..+ .|+.+..+.+...+.++.
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n--------------------~ypg~~~d~~~~~~~~s~ 67 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN--------------------RYPGARCDIESIEYCYSF 67 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC--------------------CCTTCBCSSCTTTSSCCS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccC--------------------CCCCceeccccccccccc
Confidence 589999999999999999999999999999999999999764 122222222222222221
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC-CcEEEEEeecCCceEEEEeCEEEEe
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+... ....+...||.+.++.+|++++++++++..+++++++|+++.++++ +.|+|.+.++. ++++|+||+|
T Consensus 68 ~~~~~---~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~----~~~~~~~i~a 140 (298)
T d1w4xa1 68 SEEVL---QEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD----RIRARYLIMA 140 (298)
T ss_dssp CHHHH---HHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC----EEEEEEEEEC
T ss_pred ccccc---CCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecccccc----ccccceEEEe
Confidence 11100 0113456688899999999999999999777999999999998654 67999998875 8999999999
Q ss_pred eCCCCCcccCCCCCCCC
Q 018550 162 NGHFSVPRLAQVPGIDS 178 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~ 178 (354)
||..+.|..|.+++.+.
T Consensus 141 tG~ls~~~~p~~~~~~i 157 (298)
T d1w4xa1 141 SGQLSDALTGALFKIDI 157 (298)
T ss_dssp CCSCCCCTTHHHHTSEE
T ss_pred ecccccccCCccccccc
Confidence 99999999888877764
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.1e-20 Score=146.33 Aligned_cols=122 Identities=26% Similarity=0.478 Sum_probs=95.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+||||||||++||..|+++|++|+|||+.+.+||.+.....
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~----------------------------------- 87 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQ----------------------------------- 87 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTT-----------------------------------
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEe-----------------------------------
Confidence 589999999999999999999999999999999999998875211
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+.+....++.+++.+.+++.+++ ++++++|+. + ....+|.||+|
T Consensus 88 --------------~p~~~~~~~~~~~~~~~~~~~gV~--i~l~~~Vt~--------------~-----~~~~~d~vilA 132 (179)
T d1ps9a3 88 --------------IPGKEEFYETLRYYRRMIEVTGVT--LKLNHTVTA--------------D-----QLQAFDETILA 132 (179)
T ss_dssp --------------STTCTTHHHHHHHHHHHHHHHTCE--EEESCCCCS--------------S-----SSCCSSEEEEC
T ss_pred --------------CcccchHHHHHHHHHHhhhcCCeE--EEeCCEEcc--------------c-----ccccceeEEEe
Confidence 011222378889999999999998 899887632 1 13578999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHH
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIK 213 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a 213 (354)
|| +.++.+.+++.+ .+++++|||+|.+++++.
T Consensus 133 tG--~~~~~~~~pg~~------------------~g~~v~vigggd~a~~~~ 164 (179)
T d1ps9a3 133 SG--IPNRALAQPLID------------------SGKTVHLIGGCDVAMELD 164 (179)
T ss_dssp CC--EECCTTHHHHHT------------------TTCCEEECGGGTCCSSCC
T ss_pred ec--CCCcccccchhc------------------cCCEEEEECCcHhhhhcc
Confidence 99 666665544422 368899999999999873
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.74 E-value=2.4e-21 Score=160.72 Aligned_cols=166 Identities=12% Similarity=0.088 Sum_probs=101.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+||||||||+++|..|+++|++|+|+|+++.+||.|.......
T Consensus 49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~--------------------------------- 95 (233)
T d1djqa3 49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALP--------------------------------- 95 (233)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTST---------------------------------
T ss_pred CceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccc---------------------------------
Confidence 47999999999999999999999999999999999999988631100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.+........+....+.+.... .. ... +.. +...+...+. .++.+|+||+|
T Consensus 96 ----------------~~~~~~~~~~~~~~~~~~~~~~--~~-~~~---~~~---~~~~~~~~~~----~~~~~d~vviA 146 (233)
T d1djqa3 96 ----------------GLGEWSYHRDYRETQITKLLKK--NK-ESQ---LAL---GQKPMTADDV----LQYGADKVIIA 146 (233)
T ss_dssp ----------------TCGGGGHHHHHHHHHHHHHHTT--CT-TCE---EEC---SCCCCCHHHH----HTSCCSEEEEC
T ss_pred ----------------eeecccccchhHHHHHHHHhhc--ce-eee---eec---ccccccchhh----hhhccceeeec
Confidence 0000123334444444433222 00 011 110 1111222222 25689999999
Q ss_pred eCCCCCcccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 162 tG~~s~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
|| +.++.|..++.........+...........+++++|+|+|.+|+|+|..|++.|++|++++|++.
T Consensus 147 tG--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~ 214 (233)
T d1djqa3 147 TG--ASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRET 214 (233)
T ss_dssp CC--EECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCC
T ss_pred cC--CCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEeccc
Confidence 99 555544333222110011111111111123568899999999999999999999999999999864
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.69 E-value=5.7e-20 Score=154.85 Aligned_cols=60 Identities=22% Similarity=0.443 Sum_probs=51.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchh
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRV 71 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (354)
|||+||||||+|+.+|..++++|.+|.|+|++ .+||+|.+ .+|.|.+.++.+........
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~n--------~gciPsK~l~~~~~~~~~~~ 61 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVN--------VGCVPKKIMFNAASVHDILE 61 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHH--------TSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEEe--------eCCcchHHHHhhhhcccchh
Confidence 79999999999999999999999999999985 69999988 48999888777655444333
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=6.5e-19 Score=144.38 Aligned_cols=183 Identities=15% Similarity=0.217 Sum_probs=110.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc-ccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (354)
+|||+||||||+|+++|..|++.|.+|+|||++ .+||+|.+. +|.|.+.+.... .+..+........+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~~~--------gc~p~k~l~~~a~~~~~~~~~~~~~g~~~ 72 (217)
T d1gesa1 2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNV--------GCVPKKVMWHAAQIREAIHMYGPDYGFDT 72 (217)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHHTTGGGGTEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEecc--------cccccccchhhHHHHHHHHhhhhhcCccC
Confidence 589999999999999999999999999999995 799999874 777776665443 2322322222211111
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~ 149 (354)
... ...+..+.++ .+..+.+.+++ +......... ...+.. ++
T Consensus 73 ~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~--v~~~~~~~~~------~~~~~~-~~--- 125 (217)
T d1gesa1 73 TIN---------------KFNWETLIASRTAYIDRIHTSYENVLGKNNVD--VIKGFARFVD------AKTLEV-NG--- 125 (217)
T ss_dssp EEE---------------EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESCCEEEE------TTEEEE-TT---
T ss_pred Ccc---------------cccHHHHHHHHHHHHHHHHHHHHHHHhCCeEE--EEeeecccce------eeeecC-CC---
Confidence 000 0011222222 23333444665 4443222111 111111 11
Q ss_pred eEEEEeCEEEEeeCCCCCcccCCCCCCCCCC----cceeecccCCC---CCCCCCCeEEEEccCCCHHHHHHHHhccCCE
Q 018550 150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWP----GKQMHSHNYRI---PNPFQDQVVILIGHYASGLDIKRDLAGFAKE 222 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~~s~~~~p~~~g~~~~~----~~~~~~~~~~~---~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~ 222 (354)
..+.++.+++||| +.|..|.+|+.+... +.......+.. ......++|.+||+|.+|+|+|..+.+.|.+
T Consensus 126 -~~~~~~~~iiatG--~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~ 202 (217)
T d1gesa1 126 -ETITADHILIATG--GRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRR 202 (217)
T ss_dssp -EEEEEEEEEECCC--EEECCCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHH
T ss_pred -ceeeeeeeeeecC--ccccCCCCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHH
Confidence 4889999999999 888888777654321 01111111111 1112456899999999999999999888876
Q ss_pred E
Q 018550 223 V 223 (354)
Q Consensus 223 v 223 (354)
|
T Consensus 203 v 203 (217)
T d1gesa1 203 L 203 (217)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.65 E-value=6.9e-17 Score=135.12 Aligned_cols=161 Identities=19% Similarity=0.234 Sum_probs=94.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCc-----ccccccccc-hhccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP-----VHSSLYKSL-RVNLP 74 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~ 74 (354)
|++||+|||||++|+++|..|+++|++|+||||++.+|+................+...+ .....+... .....
T Consensus 1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T d2i0za1 1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN 80 (251)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence 789999999999999999999999999999999988876544321111000000000000 000000000 00000
Q ss_pred cccccc---cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceE
Q 018550 75 RELMGF---QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151 (354)
Q Consensus 75 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~ 151 (354)
.....+ .+.+...... ............+.+.+.+.+++.+++ ++++++|++|..+++..+.+.+.+++
T Consensus 81 ~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~i~~~L~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~---- 152 (251)
T d2i0za1 81 EDIITFFENLGVKLKEEDH--GRMFPVSNKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYENGQTKAVILQTGE---- 152 (251)
T ss_dssp HHHHHHHHHTTCCEEECGG--GEEEETTCCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTCC----
T ss_pred HHHHHHHHhcCCccccccc--cceecccccHHHHHHHHHHHHHHcCCc--ccCCcEEEEEEEECCEEEEEEeCCCC----
Confidence 000000 0111110000 000001123367888888888889998 99999999999887333446666664
Q ss_pred EEEeCEEEEeeCCCCCcc
Q 018550 152 EETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 152 ~~~~d~vIlAtG~~s~~~ 169 (354)
.+++|+||+|||..|.|+
T Consensus 153 ~i~a~~vI~AtGg~S~p~ 170 (251)
T d2i0za1 153 VLETNHVVIAVGGKSVPQ 170 (251)
T ss_dssp EEECSCEEECCCCSSSGG
T ss_pred eEecCeEEEccCCccccc
Confidence 899999999999776654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=7.9e-15 Score=106.56 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=82.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...+
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~---------------------------------------- 60 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF---------------------------------------- 60 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS----------------------------------------
T ss_pred CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhc----------------------------------------
Confidence 4789999999999999999999999999999976441100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+++.+.+++.|++ ++++++|+++..++++..++++.+|. ++.+|.||+|
T Consensus 61 ------d--------------~~~~~~~~~~l~~~GV~--~~~~~~v~~i~~~~~~~~~v~~~~g~----~~~~D~vi~a 114 (116)
T d1gesa2 61 ------D--------------PMISETLVEVMNAEGPQ--LHTNAIPKAVVKNTDGSLTLELEDGR----SETVDCLIWA 114 (116)
T ss_dssp ------C--------------HHHHHHHHHHHHHHSCE--EECSCCEEEEEECTTSCEEEEETTSC----EEEESEEEEC
T ss_pred ------c--------------hhhHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCcEEEEEECCCC----EEEcCEEEEe
Confidence 0 77889999999999999 99999999999876567888888875 8999999999
Q ss_pred eC
Q 018550 162 NG 163 (354)
Q Consensus 162 tG 163 (354)
+|
T Consensus 115 ~G 116 (116)
T d1gesa2 115 IG 116 (116)
T ss_dssp SC
T ss_pred cC
Confidence 98
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.58 E-value=7.6e-16 Score=128.80 Aligned_cols=158 Identities=20% Similarity=0.385 Sum_probs=90.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCC--CCCCCCCCCCccc--ccccccchhcccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES--DPLGVDPNRYPVH--SSLYKSLRVNLPREL 77 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (354)
.+||+|||||+||+++|..|+++|.+|+|||+.+.+|..+...++... .+....|...... ......+....+...
T Consensus 4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (253)
T d2gqfa1 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF 83 (253)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccch
Confidence 478999999999999999999999999999999888755433211100 0001111110000 001111111111111
Q ss_pred ccc---cCCCCCccCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC-cEEEEEeecCCceE
Q 018550 78 MGF---QAYPFVARNYEGSVDLRRYP--GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVE 151 (354)
Q Consensus 78 ~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~ 151 (354)
..+ ....+... .....|+ ...++.+.+.+.+++.+++ ++++++|+++...+++ ...+...... .
T Consensus 84 ~~~~~~~g~~~~~~-----~~~~~~~~~~a~~i~~~L~~~~~~~gV~--i~~~~~V~~i~~~~~~~~v~~~~~~~~---~ 153 (253)
T d2gqfa1 84 ISLVAEQGITYHEK-----ELGQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEKVRFVLQVNS---T 153 (253)
T ss_dssp HHHHHHTTCCEEEC-----STTEEEETTCTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCSCSSCCEEEEETT---E
T ss_pred hhhhhhcCcceeee-----cCCccccccchhHHHHHHHHHHHHcCCC--eecCceEEEEEeecCCceeEEEEecCC---E
Confidence 111 01111110 0111111 2367889999999999999 9999999999987632 1122222221 3
Q ss_pred EEEeCEEEEeeCCCCCcc
Q 018550 152 EETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 152 ~~~~d~vIlAtG~~s~~~ 169 (354)
++++|+||+|||..+.|.
T Consensus 154 ~~~a~~VIiAtGG~S~p~ 171 (253)
T d2gqfa1 154 QWQCKNLIVATGGLSMPG 171 (253)
T ss_dssp EEEESEEEECCCCSSCGG
T ss_pred EEEeCEEEEcCCcccccc
Confidence 899999999999765544
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.56 E-value=1.1e-15 Score=111.83 Aligned_cols=81 Identities=14% Similarity=0.243 Sum_probs=69.6
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----------ccccccCCCCC-CeEEecceeEEecCCcEEEcc
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRN 263 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~ 263 (354)
.+++++|||+|++|+|+|..|++.|.+||++.+++. +...+.+++.+ ++++++.|+++..+. ++++|
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~~-v~l~d 107 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGV-VLLDD 107 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEETTE-EEETT
T ss_pred cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCE-EEECC
Confidence 579999999999999999999999999999999885 11223345555 899999999987665 99999
Q ss_pred CcEEecCEEEEccc
Q 018550 264 GRVVSADVIMHCTG 277 (354)
Q Consensus 264 g~~~~~D~vi~a~G 277 (354)
|++++||+||+|+|
T Consensus 108 g~~i~~D~vi~a~G 121 (121)
T d1d7ya2 108 GTRIAADMVVVGIG 121 (121)
T ss_dssp SCEEECSEEEECSC
T ss_pred CCEEECCEEEEeeC
Confidence 99999999999998
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.53 E-value=1.1e-13 Score=100.89 Aligned_cols=98 Identities=27% Similarity=0.365 Sum_probs=83.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|||||+.|+.+|..|++.|.+|+++++.+++-..
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~----------------------------------------- 60 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA----------------------------------------- 60 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-----------------------------------------
Confidence 478999999999999999999999999999997644100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+++++.+++.|++ +++++++++++..+ ++.+++..++.+ .+++.+|.|++|
T Consensus 61 ----~d---------------~ei~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~v~v~~~~~~~-~~~~~~D~vlvA 117 (119)
T d3lada2 61 ----VD---------------EQVAKEAQKILTKQGLK--ILLGARVTGTEVKN-KQVTVKFVDAEG-EKSQAFDKLIVA 117 (119)
T ss_dssp ----SC---------------HHHHHHHHHHHHHTTEE--EEETCEEEEEEECS-SCEEEEEESSSE-EEEEEESEEEEC
T ss_pred ----cc---------------chhHHHHHHHHHhcCce--eecCcEEEEEEEeC-CEEEEEEEECCC-CEEEECCEEEEe
Confidence 00 78899999999999999 99999999999887 778888776532 368899999999
Q ss_pred eC
Q 018550 162 NG 163 (354)
Q Consensus 162 tG 163 (354)
+|
T Consensus 118 vG 119 (119)
T d3lada2 118 VG 119 (119)
T ss_dssp SC
T ss_pred eC
Confidence 98
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.50 E-value=9.4e-15 Score=106.03 Aligned_cols=101 Identities=14% Similarity=0.254 Sum_probs=76.6
Q ss_pred cCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------ccccccCC
Q 018550 170 LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DETHEKQP 239 (354)
Q Consensus 170 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~~~~~l~ 239 (354)
.|++||.+. .+++.+..... .+++++|||||++|+|+|..|++.|.+||++.|++. +...+.++
T Consensus 1 ~P~IpG~e~----~~ts~~~~~l~--~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~ 74 (117)
T d1onfa2 1 FPPVKGIEN----TISSDEFFNIK--ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMK 74 (117)
T ss_dssp CCSCTTGGG----CEEHHHHTTCC--CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred CcccCCHhH----cCchhHHhccC--CCCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHH
Confidence 377888754 24444443333 369999999999999999999999999999999875 22333445
Q ss_pred CCC-CeEEecceeEEec--CCc--EEEccCcEE-ecCEEEEcc
Q 018550 240 GYD-NMWLHSMVERANE--DGT--VVFRNGRVV-SADVIMHCT 276 (354)
Q Consensus 240 ~~~-~~~~~~~v~~v~~--~~~--v~~~~g~~~-~~D~vi~a~ 276 (354)
+.+ ++++++.|+++++ ++. +++++|+.+ ++|.||||.
T Consensus 75 ~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 75 KNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp HTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred hCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 555 9999999999973 333 778899877 489999985
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.48 E-value=3.4e-16 Score=115.07 Aligned_cols=106 Identities=21% Similarity=0.268 Sum_probs=79.0
Q ss_pred CcccCCCCCCCCCCcceeecccCCCC-----CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---------c
Q 018550 167 VPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---------D 232 (354)
Q Consensus 167 ~~~~p~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---------~ 232 (354)
+|+.|++||.+. .++.....+. ....+++++|||||++|+|+|..|++.|.+||++++++. +
T Consensus 1 R~r~p~ipG~e~----~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~ 76 (122)
T d1xhca2 1 RAREPQIKGKEY----LLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSN 76 (122)
T ss_dssp EECCCCSBTGGG----EECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHH
T ss_pred CCCCcCCCCccc----eEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccCCCHHHHH
Confidence 468889999643 2322221111 111458999999999999999999999999999999875 1
Q ss_pred cccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccC
Q 018550 233 ETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGL 278 (354)
Q Consensus 233 ~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~ 278 (354)
...+.+++.+ ++++++.++++..++ + +.+++.+++|+||||+|.
T Consensus 77 ~~~~~l~~~GV~~~~~~~v~~~~~~~-v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 77 MIKDMLEETGVKFFLNSELLEANEEG-V-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHHHHTTEEEECSCCEEEECSSE-E-EETTEEEECSCEEEECCE
T ss_pred HHHHHHHHCCcEEEeCCEEEEEeCCE-E-EeCCCEEECCEEEEEEEe
Confidence 2233345556 899999999998776 4 567789999999999995
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=8.2e-15 Score=106.46 Aligned_cols=82 Identities=13% Similarity=0.245 Sum_probs=69.0
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCC--c--EE
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDG--T--VV 260 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~--~--v~ 260 (354)
.+++++|||+|++|+|+|..|++.|.+||++.+.+. +..++.+++.+ ++++++.|+++.+++ . +.
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~ 99 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLE 99 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEE
T ss_pred CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEE
Confidence 568999999999999999999999999999999875 22234444555 899999999998543 2 67
Q ss_pred EccCcEEecCEEEEccc
Q 018550 261 FRNGRVVSADVIMHCTG 277 (354)
Q Consensus 261 ~~~g~~~~~D~vi~a~G 277 (354)
+++|+++++|.||+|+|
T Consensus 100 ~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 100 LEDGRSETVDCLIWAIG 116 (116)
T ss_dssp ETTSCEEEESEEEECSC
T ss_pred ECCCCEEEcCEEEEecC
Confidence 78999999999999998
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.48 E-value=2.7e-14 Score=101.99 Aligned_cols=101 Identities=23% Similarity=0.410 Sum_probs=81.9
Q ss_pred cCCCCCCCC----CCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeE
Q 018550 170 LAQVPGIDS----WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMW 245 (354)
Q Consensus 170 ~p~~~g~~~----~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~l~~~~~~~ 245 (354)
+|.+||+++ ++|..+|+..|+.+..+++|+|+|||+|.+|+|+|..|++.+++++++++++... .....+.
T Consensus 1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~-----~~~~~~~ 75 (107)
T d2gv8a2 1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD-----IQNESLQ 75 (107)
T ss_dssp BCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS-----CBCSSEE
T ss_pred CcCCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccc-----cccccce
Confidence 477888665 4689999999999999999999999999999999999999999988888776311 1122455
Q ss_pred EecceeEEecCCc-EEEccCcEEe-cCEEEEc
Q 018550 246 LHSMVERANEDGT-VVFRNGRVVS-ADVIMHC 275 (354)
Q Consensus 246 ~~~~v~~v~~~~~-v~~~~g~~~~-~D~vi~a 275 (354)
....+.++..++. +.+.||+.+. +|.||+|
T Consensus 76 ~~~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 76 QVPEITKFDPTTREIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp EECCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred ecCCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence 6667888876554 9999998876 8999997
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.47 E-value=1.1e-12 Score=95.21 Aligned_cols=96 Identities=19% Similarity=0.246 Sum_probs=79.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...+
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~---------------------------------------- 61 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGF---------------------------------------- 61 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTS----------------------------------------
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecceecccc----------------------------------------
Confidence 4789999999999999999999999999999987542110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+++.+..++.|++ ++++++|++++..+ +..+++...+ +++.++++|.|++.
T Consensus 62 -----d---------------~~~~~~l~~~l~~~GI~--i~~~~~v~~i~~~~-~~~~v~~~~~-g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 62 -----E---------------KQMAAIIKKRLKKKGVE--VVTNALAKGAEERE-DGVTVTYEAN-GETKTIDADYVLVT 117 (117)
T ss_dssp -----C---------------HHHHHHHHHHHHHTTCE--EEESEEEEEEEEET-TEEEEEEEET-TEEEEEEESEEEEC
T ss_pred -----c---------------chhHHHHHHHHHhcCCE--EEcCCEEEEEEEcC-CEEEEEEEeC-CCEEEEEeEEEEEC
Confidence 0 67889999999999999 99999999999887 6677776543 33468999999973
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.46 E-value=4.3e-13 Score=97.50 Aligned_cols=96 Identities=18% Similarity=0.242 Sum_probs=80.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc---CCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
+++++|||||+.|+.+|..|++. |.+|+++|+.+.+...+
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~------------------------------------- 60 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGF------------------------------------- 60 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTS-------------------------------------
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccc-------------------------------------
Confidence 47899999999999999877654 78999999876441000
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
. .++.+++++.+++.|++ ++++++++++...+++...+...+|. +++||.|
T Consensus 61 ---------d--------------~~~~~~~~~~l~~~GI~--v~~~~~v~~i~~~~~g~~~v~~~~g~----~i~~D~V 111 (117)
T d1feca2 61 ---------D--------------SELRKQLTEQLRANGIN--VRTHENPAKVTKNADGTRHVVFESGA----EADYDVV 111 (117)
T ss_dssp ---------C--------------HHHHHHHHHHHHHTTEE--EEETCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred ---------c--------------chhhHHHHHHHhhCcEE--EEcCCEEEEEEECCCCEEEEEECCCC----EEEcCEE
Confidence 0 67889999999999999 99999999999876566778888875 8999999
Q ss_pred EEeeC
Q 018550 159 VVCNG 163 (354)
Q Consensus 159 IlAtG 163 (354)
|+|+|
T Consensus 112 i~a~G 116 (117)
T d1feca2 112 MLAIG 116 (117)
T ss_dssp EECSC
T ss_pred EEecC
Confidence 99999
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.46 E-value=6.4e-14 Score=110.89 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=75.1
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc--------------------cccccC-CC-CCCeEEecceeEEec
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--------------------ETHEKQ-PG-YDNMWLHSMVERANE 255 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~--------------------~~~~~l-~~-~~~~~~~~~v~~v~~ 255 (354)
.+|+|||||++|+|+|..|++.|.+++++.+++.. ...... .. ..+++.+..++++..
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~ 83 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP 83 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence 45999999999999999999999776666654320 000111 12 236788889999876
Q ss_pred CCc-EEEccCcEEecCEEEEcccCCCccCcccccCch-----h--------------hhhceeeeecccch
Q 018550 256 DGT-VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPM-----A--------------LLLWMTIVLGHCTS 306 (354)
Q Consensus 256 ~~~-v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~-----~--------------~~~~~i~a~GD~~~ 306 (354)
+.. +++++|+++++|++|+|+|.. |++.+++.. + ....+|||+|||+.
T Consensus 84 ~~~~~~~~~g~~~~~D~vi~a~G~~---p~~~~~~~~~~~~~gl~~~~~I~vd~~~~ts~~~IyA~GD~a~ 151 (183)
T d1d7ya1 84 QAHTVALSDGRTLPYGTLVLATGAA---PRAVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTR 151 (183)
T ss_dssp TTTEEEETTSCEEECSEEEECCCEE---ECCEEECCHHHHHTTCCBSSSEECCTTCBCSSTTEEECGGGEE
T ss_pred ccceeEecCCcEeeeeeEEEEEEEE---cccccccccccceeeEeeCCcEEeccceeccccccchhhhhhc
Confidence 554 888999999999999999999 554433211 0 01245999999975
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.46 E-value=4.9e-13 Score=99.29 Aligned_cols=97 Identities=24% Similarity=0.302 Sum_probs=78.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+....
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~---------------------------------------- 74 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV---------------------------------------- 74 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT----------------------------------------
T ss_pred CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc----------------------------------------
Confidence 4789999999999999999999999999999976431100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC-cE-EEEEeecCCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KW-KVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~-~v~~~~g~~~~~~~~~d~vI 159 (354)
.. ..+.+++++..++.|++ ++++++|++++...++ .. .+.+.+|. ++++|.||
T Consensus 75 -----~~--------------~~~~~~~~~~~~~~GV~--i~~~~~v~~i~~~~~~~~v~~v~~~~G~----~i~~D~vi 129 (133)
T d1q1ra2 75 -----TA--------------PPVSAFYEHLHREAGVD--IRTGTQVCGFEMSTDQQKVTAVLCEDGT----RLPADLVI 129 (133)
T ss_dssp -----SC--------------HHHHHHHHHHHHHHTCE--EECSCCEEEEEECTTTCCEEEEEETTSC----EEECSEEE
T ss_pred -----cc--------------hhhhhhhhhcccccccE--EEeCCeEEEEEEeCCCceEEEEECCCCC----EEECCEEE
Confidence 00 67888899999999999 9999999999886522 22 35566765 89999999
Q ss_pred EeeC
Q 018550 160 VCNG 163 (354)
Q Consensus 160 lAtG 163 (354)
+|+|
T Consensus 130 ~a~G 133 (133)
T d1q1ra2 130 AGIG 133 (133)
T ss_dssp ECCC
T ss_pred EeeC
Confidence 9998
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.45 E-value=2.5e-13 Score=99.45 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=83.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++++|||||+.|+.+|..+++.|.+|+++|+.+.+...+
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~---------------------------------------- 65 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA---------------------------------------- 65 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc----------------------------------------
Confidence 4789999999999999999999999999999976441110
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+++.+..++.|++ +++++++.+++..+ ++..+++.++.+..+++++|.|++|
T Consensus 66 ------d--------------~~~~~~l~~~l~~~gv~--~~~~~~v~~v~~~~-~g~~v~~~~~~g~~~~i~~D~vl~A 122 (125)
T d1ojta2 66 ------D--------------RDLVKVWQKQNEYRFDN--IMVNTKTVAVEPKE-DGVYVTFEGANAPKEPQRYDAVLVA 122 (125)
T ss_dssp ------C--------------HHHHHHHHHHHGGGEEE--EECSCEEEEEEEET-TEEEEEEESSSCCSSCEEESCEEEC
T ss_pred ------h--------------hhHHHHHHHHHHHcCcc--cccCcEEEEEEEcC-CcEEEEEEeCCCCeEEEEcCEEEEe
Confidence 0 78889999999999998 99999999999887 6677777665544458999999999
Q ss_pred eC
Q 018550 162 NG 163 (354)
Q Consensus 162 tG 163 (354)
+|
T Consensus 123 ~G 124 (125)
T d1ojta2 123 AG 124 (125)
T ss_dssp CC
T ss_pred cC
Confidence 99
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.5e-14 Score=106.23 Aligned_cols=110 Identities=24% Similarity=0.319 Sum_probs=90.6
Q ss_pred ccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----ccccccCCCC--C
Q 018550 169 RLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQPGY--D 242 (354)
Q Consensus 169 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~~l~~~--~ 242 (354)
|.+.+||.++|.++.++.+..++...+++++|+|||+|.+|+|.|..|++..++|++++|++. +...+++.+. .
T Consensus 2 R~L~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~I 81 (126)
T d1fl2a2 2 RNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNV 81 (126)
T ss_dssp CCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTE
T ss_pred CcCCCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccccccccccccccccccce
Confidence 567899999999999999888888889999999999999999999999999999999999875 2223344333 3
Q ss_pred CeEEecceeEEecCC-c---EEEcc---C--cEEecCEEEEcccC
Q 018550 243 NMWLHSMVERANEDG-T---VVFRN---G--RVVSADVIMHCTGL 278 (354)
Q Consensus 243 ~~~~~~~v~~v~~~~-~---v~~~~---g--~~~~~D~vi~a~G~ 278 (354)
++++++++.++.+++ . +++.| | +++++|.+|++.|.
T Consensus 82 ~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 82 DIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp EEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred eEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence 788999999999763 3 55544 4 56899999999984
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.45 E-value=4.3e-14 Score=110.11 Aligned_cols=104 Identities=14% Similarity=0.250 Sum_probs=74.7
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccc--------------cccC--------CCCC-CeEEecceeEEe
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADET--------------HEKQ--------PGYD-NMWLHSMVERAN 254 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~--------------~~~l--------~~~~-~~~~~~~v~~v~ 254 (354)
.+|+|||+|++|+|+|..|++ +.+||++.+.+.... ...+ .+.+ +++.++.++.+.
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 79 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLID 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEE
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccc
Confidence 379999999999999999976 568999998764100 0111 1122 567788888888
Q ss_pred cCCcEEEccCcEEecCEEEEcccCCCccCcccccCchhh--------------hhceeeeecccch
Q 018550 255 EDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMAL--------------LLWMTIVLGHCTS 306 (354)
Q Consensus 255 ~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~--------------~~~~i~a~GD~~~ 306 (354)
.+..+.+.++.++++|.++||+|.. |+ +++...+. ...+|||+|||+.
T Consensus 80 ~~~~~~~~~~~~i~~D~li~a~G~~---~~-~~~~~~gl~~~~~i~v~~~~~t~~~~i~aiGD~~~ 141 (167)
T d1xhca1 80 RGRKVVITEKGEVPYDTLVLATGAP---NV-DLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAE 141 (167)
T ss_dssp TTTTEEEESSCEEECSEEEECCCEE---CC-HHHHHTTCCBSSSEECCTTSBCSSTTEEECGGGEE
T ss_pred cccccccccccccccceeEEEEEec---CC-chhhhcCceeCCceeeccccEecCCCeEEeeeccc
Confidence 7666888888899999999999987 32 33322222 1245999999975
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.44 E-value=3.2e-13 Score=97.79 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=75.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|||||+.|+.+|..|++.|.+|+++|+.+.+...
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~----------------------------------------- 59 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT----------------------------------------- 59 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-----------------------------------------
Confidence 478999999999999999999999999999997654100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
+ . .++.+++++..++.|++ ++++++|++++. +.......++. ..++++|.||+|
T Consensus 60 -~---d---------------~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~---~~~~~~~~~~~--~~~i~~D~vi~A 113 (115)
T d1lvla2 60 -Y---D---------------SELTAPVAESLKKLGIA--LHLGHSVEGYEN---GCLLANDGKGG--QLRLEADRVLVA 113 (115)
T ss_dssp -S---C---------------HHHHHHHHHHHHHHTCE--EETTCEEEEEET---TEEEEECSSSC--CCEECCSCEEEC
T ss_pred -c---c---------------chhHHHHHHHHHhhcce--EEcCcEEEEEcC---CeEEEEEcCCC--eEEEEcCEEEEe
Confidence 0 0 67889999999999999 999999999852 33333333332 358999999999
Q ss_pred eC
Q 018550 162 NG 163 (354)
Q Consensus 162 tG 163 (354)
+|
T Consensus 114 ~G 115 (115)
T d1lvla2 114 VG 115 (115)
T ss_dssp CC
T ss_pred cC
Confidence 98
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.44 E-value=2.2e-14 Score=105.23 Aligned_cols=106 Identities=11% Similarity=0.126 Sum_probs=78.5
Q ss_pred cccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------cccccc
Q 018550 168 PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DETHEK 237 (354)
Q Consensus 168 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~~~~~ 237 (354)
|++|.+|+.+ +++++.+.... ...+++++|||+|++|+|+|..+++.|.+||++.+++. +...+.
T Consensus 2 ~~lP~ip~~~----~i~ts~~~l~l-~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~ 76 (125)
T d1ojta2 2 TKLPFIPEDP----RIIDSSGALAL-KEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQ 76 (125)
T ss_dssp CCCSSCCCCT----TEECHHHHTTC-CCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHH
T ss_pred CCCCCCCCCC----cEEcHHHhhCc-cccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHH
Confidence 4566666533 34555544443 34579999999999999999999999999999999885 223444
Q ss_pred CCCCC-CeEEecceeEEecCCc---EEEccC----cEEecCEEEEcccC
Q 018550 238 QPGYD-NMWLHSMVERANEDGT---VVFRNG----RVVSADVIMHCTGL 278 (354)
Q Consensus 238 l~~~~-~~~~~~~v~~v~~~~~---v~~~~g----~~~~~D~vi~a~G~ 278 (354)
+++.+ +++.++.+++++.+.. ++++++ +++++|.|++|+|+
T Consensus 77 l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 77 NEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp HGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred HHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence 55666 8999999999984432 555443 47999999999995
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.44 E-value=4.7e-14 Score=102.72 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=67.8
Q ss_pred CCCeEEEEccCCCHHHHHHHHhc---cCCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecC--Cc-
Q 018550 196 QDQVVILIGHYASGLDIKRDLAG---FAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANED--GT- 258 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~---~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~--~~- 258 (354)
.|++++|||||++|+|+|..+++ .|.+|+++.+++. ....+.+++.+ ++++++.|+++..+ +.
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~ 96 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTR 96 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCE
T ss_pred cCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEE
Confidence 56999999999999999987655 4889999999875 22333455666 99999999999743 33
Q ss_pred -EEEccCcEEecCEEEEcccC
Q 018550 259 -VVFRNGRVVSADVIMHCTGL 278 (354)
Q Consensus 259 -v~~~~g~~~~~D~vi~a~G~ 278 (354)
+++++|++++||.||||+|+
T Consensus 97 ~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 97 HVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp EEEETTSCEEEESEEEECSCE
T ss_pred EEEECCCCEEEcCEEEEecCC
Confidence 78899999999999999995
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.44 E-value=3.3e-13 Score=98.33 Aligned_cols=92 Identities=21% Similarity=0.256 Sum_probs=75.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+-...
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~---------------------------------------- 69 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA---------------------------------------- 69 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc----------------------------------------
Confidence 4789999999999999999999999999999976431000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. ..+.+++++..++.|++ ++++++|+++.. + .+++.+|. ++++|.||+|
T Consensus 70 -----~~--------------~~~~~~~~~~l~~~GV~--i~~~~~v~~~~~---~--~v~l~dg~----~i~~D~vi~a 119 (121)
T d1d7ya2 70 -----AP--------------ATLADFVARYHAAQGVD--LRFERSVTGSVD---G--VVLLDDGT----RIAADMVVVG 119 (121)
T ss_dssp -----SC--------------HHHHHHHHHHHHTTTCE--EEESCCEEEEET---T--EEEETTSC----EEECSEEEEC
T ss_pred -----CC--------------HHHHHHHHHHHHHCCcE--EEeCCEEEEEeC---C--EEEECCCC----EEECCEEEEe
Confidence 00 77888999999999999 999999988752 2 35666765 8999999999
Q ss_pred eC
Q 018550 162 NG 163 (354)
Q Consensus 162 tG 163 (354)
+|
T Consensus 120 ~G 121 (121)
T d1d7ya2 120 IG 121 (121)
T ss_dssp SC
T ss_pred eC
Confidence 98
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.43 E-value=7.8e-14 Score=113.99 Aligned_cols=43 Identities=30% Similarity=0.523 Sum_probs=39.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~ 44 (354)
+++||+||||||+|+++|..+++.|.+|+|||+. .+||+|...
T Consensus 2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~-~~GG~~~~~ 44 (223)
T d1ebda1 2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNV 44 (223)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHT
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecC-CCCcceecc
Confidence 4689999999999999999999999999999995 789988774
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.43 E-value=9.3e-13 Score=95.28 Aligned_cols=95 Identities=16% Similarity=0.354 Sum_probs=79.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~----------------------------------------- 60 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK----------------------------------------- 60 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-----------------------------------------
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-----------------------------------------
Confidence 468999999999999999999999999999997644100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEE-EeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE-TFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~-~~d~vIl 160 (354)
+ . .++.+++++.+++.|++ ++++++|++++..+++..++++.+|. .+ .+|.||+
T Consensus 61 -~----d--------------~~~~~~~~~~l~~~gV~--i~~~~~v~~i~~~~~~~~~v~~~~G~----~~~~~D~Vi~ 115 (117)
T d1onfa2 61 -F----D--------------ESVINVLENDMKKNNIN--IVTFADVVEIKKVSDKNLSIHLSDGR----IYEHFDHVIY 115 (117)
T ss_dssp -S----C--------------HHHHHHHHHHHHHTTCE--EECSCCEEEEEESSTTCEEEEETTSC----EEEEESEEEE
T ss_pred -c----c--------------HHHHHHHHHHHHhCCCE--EEECCEEEEEEEcCCCeEEEEECCCC----EEEeCCEEEE
Confidence 0 0 78899999999999999 99999999999876577888888875 44 6799999
Q ss_pred ee
Q 018550 161 CN 162 (354)
Q Consensus 161 At 162 (354)
|.
T Consensus 116 AI 117 (117)
T d1onfa2 116 CV 117 (117)
T ss_dssp CC
T ss_pred eC
Confidence 84
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.43 E-value=2e-12 Score=94.61 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=79.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+....
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~---------------------------------------- 61 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIK---------------------------------------- 61 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCC----------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhccc----------------------------------------
Confidence 3789999999999999999999999999999976431000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
. .++.+++++..++.+++ +++++++.+++.++++..........+.++++++|.||+|
T Consensus 62 ------d--------------~~~~~~~~~~l~~~gI~--v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a 119 (121)
T d1mo9a2 62 ------D--------------NETRAYVLDRMKEQGME--IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLG 119 (121)
T ss_dssp ------S--------------HHHHHHHHHHHHHTTCE--EESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEEC
T ss_pred ------c--------------cchhhhhhhhhhccccE--EEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEE
Confidence 0 67889999999999999 9999999999987644444333333333468999999999
Q ss_pred eC
Q 018550 162 NG 163 (354)
Q Consensus 162 tG 163 (354)
+|
T Consensus 120 ~G 121 (121)
T d1mo9a2 120 LG 121 (121)
T ss_dssp CC
T ss_pred EC
Confidence 98
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=3.7e-12 Score=92.93 Aligned_cols=98 Identities=27% Similarity=0.402 Sum_probs=79.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|||||+.|+.+|..|++.|.+|+++|+++.+-..+
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~---------------------------------------- 62 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM---------------------------------------- 62 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSS----------------------------------------
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhh----------------------------------------
Confidence 5789999999999999999999999999999976541100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC-cEEEEEeecC-CceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKD-DVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~~v~~~~g~-~~~~~~~~d~vI 159 (354)
. .++.+++++.+++.|++ ++++++|++++..+++ ...++..++. ++.+++++|.|+
T Consensus 63 ------d--------------~ei~~~l~~~l~~~GV~--i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vl 120 (122)
T d1v59a2 63 ------D--------------GEVAKATQKFLKKQGLD--FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL 120 (122)
T ss_dssp ------C--------------HHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred ------h--------------hhhHHHHHHHHHhccce--EEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEE
Confidence 0 78899999999999999 9999999999987633 3445555543 345789999999
Q ss_pred Ee
Q 018550 160 VC 161 (354)
Q Consensus 160 lA 161 (354)
+|
T Consensus 121 vA 122 (122)
T d1v59a2 121 VA 122 (122)
T ss_dssp EC
T ss_pred EC
Confidence 87
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.42 E-value=7.4e-14 Score=110.64 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=76.8
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc-------cccccCC-----C-------------CC-CeEEecc
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------ETHEKQP-----G-------------YD-NMWLHSM 249 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-------~~~~~l~-----~-------------~~-~~~~~~~ 249 (354)
..++|+|||||++|+|+|..|++.|.+++++.+.+.. .....+. . .. .+.....
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ 81 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence 4588999999999999999999999888877766531 1111110 0 01 2233444
Q ss_pred eeEEecCC-cEEEccCcEEecCEEEEcccCCCccCcccccCchhhh--------------hceeeeecccch
Q 018550 250 VERANEDG-TVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL--------------LWMTIVLGHCTS 306 (354)
Q Consensus 250 v~~v~~~~-~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~--------------~~~i~a~GD~~~ 306 (354)
+..+..+. .+...++.++++|.+++++|.++..|++++++..... ..+|||+|||+.
T Consensus 82 ~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~ts~~~vya~GD~~~ 153 (185)
T d1q1ra1 82 VTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCAR 153 (185)
T ss_dssp EEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSBCSSTTEEECGGGEE
T ss_pred eeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccccchhhhhcchhhhc
Confidence 55555443 3777888999999999999999777777766443322 244999999976
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=9.8e-13 Score=98.30 Aligned_cols=96 Identities=22% Similarity=0.257 Sum_probs=80.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHH----cCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~----~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
.++++|||||+.|+.+|..|++ .|.+|+++++++.+...
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~------------------------------------- 79 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK------------------------------------- 79 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT-------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc-------------------------------------
Confidence 3689999999999999999964 58999999987643100
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
.|+ .++.+++.+.+++.|++ +++++.|.+++.++ +...+++.+|+ ++.+|.
T Consensus 80 --------------------~~~--~~~~~~~~~~l~~~GV~--~~~~~~V~~i~~~~-~~~~v~l~~G~----~i~aD~ 130 (137)
T d1m6ia2 80 --------------------ILP--EYLSNWTMEKVRREGVK--VMPNAIVQSVGVSS-GKLLIKLKDGR----KVETDH 130 (137)
T ss_dssp --------------------TSC--HHHHHHHHHHHHTTTCE--EECSCCEEEEEEET-TEEEEEETTSC----EEEESE
T ss_pred --------------------cCC--HHHHHHHHHHHHhCCcE--EEeCCEEEEEEecC-CEEEEEECCCC----EEECCE
Confidence 011 67888999999999999 99999999999887 78889998875 899999
Q ss_pred EEEeeC
Q 018550 158 VVVCNG 163 (354)
Q Consensus 158 vIlAtG 163 (354)
||.|+|
T Consensus 131 Vi~A~G 136 (137)
T d1m6ia2 131 IVAAVG 136 (137)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 999999
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.41 E-value=1.2e-13 Score=116.62 Aligned_cols=62 Identities=21% Similarity=0.135 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCc
Q 018550 99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168 (354)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~ 168 (354)
..+...+...+.+.+++.|++ ++.+++|++|.+++ +.+.|.+.++ ++.||.||+|+|.|+..
T Consensus 147 ~i~~~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~-~~~~V~t~~g-----~i~a~~vV~AaG~~s~~ 208 (276)
T d1ryia1 147 HVEPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDG-EALFIKTPSG-----DVWANHVVVASGVWSGM 208 (276)
T ss_dssp BCCHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSS-SSEEEEETTE-----EEEEEEEEECCGGGTHH
T ss_pred eeecccchhHHHHHHHHcCCE--EecceEEEeEEeec-ceEEEecCCe-----EEEcCEEEECCCccHHH
Confidence 345578888899999999998 99999999999876 7899988775 78999999999987643
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.41 E-value=1.9e-13 Score=112.57 Aligned_cols=63 Identities=30% Similarity=0.545 Sum_probs=57.9
Q ss_pred cccCCCCCCCCCCcceeecccCC-CCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 168 PRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 168 ~~~p~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
|++|++||.+.|.|.++|+.+|. ....+++|+|+|||+|.+|+|+|.++++.+++++++.|++
T Consensus 2 P~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 2 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp CCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence 78999999999999999999995 4567899999999999999999999999999998888776
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.6e-12 Score=92.93 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=79.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|||||+.|+.+|..|++.|.+|+++++.+.+-..
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~----------------------------------------- 60 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS----------------------------------------- 60 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------------------------------------
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-----------------------------------------
Confidence 478999999999999999999999999999997644100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC---C--ceEEEEeC
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD---D--VVEEETFD 156 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~---~--~~~~~~~d 156 (354)
+ . .++.+++.+..++.|++ ++++++++++...+ +++.+...... . ......+|
T Consensus 61 -~----d--------------~~~~~~~~~~l~~~Gv~--i~~~~~v~~i~~~~-~g~~v~~~~~~~g~~~~~~~~~~~D 118 (125)
T d3grsa2 61 -F----D--------------SMISTNCTEELENAGVE--VLKFSQVKEVKKTL-SGLEVSMVTAVPGRLPVMTMIPDVD 118 (125)
T ss_dssp -S----C--------------HHHHHHHHHHHHHTTCE--EETTEEEEEEEEET-TEEEEEEEECCTTSCCEEEEEEEES
T ss_pred -h----h--------------hHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeEEEEEEEccCCcCcCccccccCC
Confidence 0 0 77889999999999999 99999999999887 66665543321 1 12467899
Q ss_pred EEEEeeC
Q 018550 157 AVVVCNG 163 (354)
Q Consensus 157 ~vIlAtG 163 (354)
.|++|+|
T Consensus 119 ~vl~a~G 125 (125)
T d3grsa2 119 CLLWAIG 125 (125)
T ss_dssp EEEECSC
T ss_pred EEEEEeC
Confidence 9999998
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.40 E-value=2.4e-13 Score=115.15 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcc
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
..+...+.+.+++.|++ ++.+++|+++...+ ++|.|.+.++ ++.+|.||+|+|.|+...
T Consensus 150 ~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~V~t~~g-----~i~a~~VViAaG~~s~~l 208 (281)
T d2gf3a1 150 ENCIRAYRELAEARGAK--VLTHTRVEDFDISP-DSVKIETANG-----SYTADKLIVSMGAWNSKL 208 (281)
T ss_dssp HHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SCEEEEETTE-----EEEEEEEEECCGGGHHHH
T ss_pred ccccccccccccccccc--ccCCcEEEEEEEEC-CEEEEEECCc-----EEEcCEEEECCCCcchhh
Confidence 67888899999999998 99999999999987 8899988776 789999999999866543
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=3.6e-13 Score=108.95 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=86.2
Q ss_pred CeEEEEccCCCHHHHHHHHhccC--CEEEEEEecCC--------------------------------------------
Q 018550 198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSVA-------------------------------------------- 231 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g--~~v~~~~r~~~-------------------------------------------- 231 (354)
.+++|||+|++|+++|..|.+.+ .+|+++.+.+.
T Consensus 5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (213)
T d1m6ia1 5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 84 (213)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence 46899999999999999998775 56999986432
Q ss_pred --ccccccCCCCC-CeEEecceeEEecCC-cEEEccCcEEecCEEEEcccCCCccCcccccCchhhh-------------
Q 018550 232 --DETHEKQPGYD-NMWLHSMVERANEDG-TVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMALL------------- 294 (354)
Q Consensus 232 --~~~~~~l~~~~-~~~~~~~v~~v~~~~-~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~~------------- 294 (354)
......+++.+ ++++++.|++++.+. .|+++||++++||.+|+|+|..+ |++++....+..
T Consensus 85 ~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~--~~~~l~~~~gl~~~~~~~~i~vd~~ 162 (213)
T d1m6ia1 85 VSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTE--PNVELAKTGGLEIDSDFGGFRVNAE 162 (213)
T ss_dssp BCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEE--ECCTTHHHHTCCBCTTTCSEECCTT
T ss_pred hhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeec--chhhhhhccchhhhhhhhhhhhhHh
Confidence 00011123344 788899999998554 49999999999999999999773 222222211110
Q ss_pred ---hceeeeecccch---------------hhHHHHHHHhhhccCCC
Q 018550 295 ---LWMTIVLGHCTS---------------TFFRQSWHQAFHLLGYH 323 (354)
Q Consensus 295 ---~~~i~a~GD~~~---------------~~~~~~~~~~~~~~~~~ 323 (354)
..+|||+|||+. ....|+...|.+++|..
T Consensus 163 l~~~~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~ 209 (213)
T d1m6ia1 163 LQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA 209 (213)
T ss_dssp CEEETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred cCcCCceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCC
Confidence 134999999975 23456777788887654
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.39 E-value=1.7e-13 Score=99.75 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=73.6
Q ss_pred ceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------ccccccCCCCC-CeEEecce
Q 018550 182 KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMV 250 (354)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v 250 (354)
.++++.+..... ..|++++|||+|++|+|+|..|++.|++|+++.+++. ....+.+++.+ ++++++.+
T Consensus 8 ~v~~s~~~l~l~-~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v 86 (119)
T d3lada2 8 VIVDSTGALDFQ-NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARV 86 (119)
T ss_dssp SEEEHHHHTSCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred EEEchhHhhCcc-cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEE
Confidence 345555544433 3679999999999999999999999999999999885 22344455666 89999999
Q ss_pred eEEecCCc---EEEccC---cEEecCEEEEccc
Q 018550 251 ERANEDGT---VVFRNG---RVVSADVIMHCTG 277 (354)
Q Consensus 251 ~~v~~~~~---v~~~~g---~~~~~D~vi~a~G 277 (354)
++++.++. +++.++ +++.||.||+|+|
T Consensus 87 ~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 87 TGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred EEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 99985543 555554 6789999999998
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.36 E-value=7.4e-12 Score=90.69 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=78.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC---CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g---~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (354)
.++++|||||+.|+.+|..|.+.+ .+|+++|+.+.+- .
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL----~----------------------------------- 60 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL----R----------------------------------- 60 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS----T-----------------------------------
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh----c-----------------------------------
Confidence 478999999999999998777654 5799999976441 0
Q ss_pred cccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEE
Q 018550 79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV 158 (354)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~v 158 (354)
.+ . .++.+++.+..++.|++ +++++++++++...++...+++.+|+ ++++|.|
T Consensus 61 ---~~----d--------------~~~~~~l~~~l~~~GV~--v~~~~~v~~ie~~~~~~~~v~~~~G~----~i~~D~V 113 (117)
T d1aoga2 61 ---GF----D--------------HTLREELTKQLTANGIQ--ILTKENPAKVELNADGSKSVTFESGK----KMDFDLV 113 (117)
T ss_dssp ---TS----C--------------HHHHHHHHHHHHHTTCE--EEESCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred ---cc----c--------------hHHHHHHHHHHHhcCcE--EEcCCEEEEEEEcCCCeEEEEECCCc----EEEeCEE
Confidence 00 0 78889999999999999 99999999999876577889988875 8999999
Q ss_pred EEee
Q 018550 159 VVCN 162 (354)
Q Consensus 159 IlAt 162 (354)
|+|.
T Consensus 114 i~AI 117 (117)
T d1aoga2 114 MMAI 117 (117)
T ss_dssp EECS
T ss_pred EEeC
Confidence 9983
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.35 E-value=2.5e-13 Score=100.88 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=67.5
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC------c-----cccccCCCCC-CeEEecceeEEecCC---c--
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------D-----ETHEKQPGYD-NMWLHSMVERANEDG---T-- 258 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~------~-----~~~~~l~~~~-~~~~~~~v~~v~~~~---~-- 258 (354)
.+++++|||+|++|+|+|..|++.|.+|+++.+.+. + ...+.+++.+ ++++++.+++++... .
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~ 113 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVT 113 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEE
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEE
Confidence 579999999999999999999999999999999875 1 1122234444 899999999997432 2
Q ss_pred -EEEccCcEEecCEEEEccc
Q 018550 259 -VVFRNGRVVSADVIMHCTG 277 (354)
Q Consensus 259 -v~~~~g~~~~~D~vi~a~G 277 (354)
+.+++|+++++|+||+|+|
T Consensus 114 ~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 114 AVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp EEEETTSCEEECSEEEECCC
T ss_pred EEECCCCCEEECCEEEEeeC
Confidence 6789999999999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.35 E-value=7.1e-13 Score=97.00 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=67.7
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC------c-----cccccCCCCC-CeEEecceeEEecCCc--EEE
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------D-----ETHEKQPGYD-NMWLHSMVERANEDGT--VVF 261 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~------~-----~~~~~l~~~~-~~~~~~~v~~v~~~~~--v~~ 261 (354)
.+++++|||+|++|+|+|..|++.|.+||++.+.+. + ...+.+++.+ +++.++.++++++++. .++
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~ 108 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVV 108 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEE
T ss_pred CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEE
Confidence 568999999999999999999999999999999874 1 1123345556 9999999999997764 557
Q ss_pred ccCcEEecCEEEEcc
Q 018550 262 RNGRVVSADVIMHCT 276 (354)
Q Consensus 262 ~~g~~~~~D~vi~a~ 276 (354)
.||++++||+||+|.
T Consensus 109 ~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 109 TDKNAYDADLVVVAV 123 (123)
T ss_dssp ESSCEEECSEEEECS
T ss_pred eCCCEEECCEEEEEC
Confidence 899999999999984
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.34 E-value=1.7e-12 Score=108.62 Aligned_cols=146 Identities=16% Similarity=0.074 Sum_probs=80.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCcccee----ecCCCCC--CCCCCCCCCCCcccccccccchhcccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW----IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR 75 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (354)
..+|+||||||+|+++|..|+++|++|+||||++.++..+ ...+... ....+.. .........
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~-----------~~~~~~~~~ 72 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVE-----------LDSISVPSS 72 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCC-----------GGGTCBCCC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcc-----------hhhhccCCC
Confidence 4789999999999999999999999999999976543221 1110000 0000000 000000000
Q ss_pred ccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHH-HhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR-EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
.+.+..+...... ........+ ......+..... ..+.. ++++.+++++.... +.+++++.+|. ++.
T Consensus 73 -~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~v~v~~~dG~----~~~ 140 (265)
T d2voua1 73 -SMEYVDALTGERV-GSVPADWRF---TSYDSIYGGLYELFGPER--YHTSKCLVGLSQDS-ETVQMRFSDGT----KAE 140 (265)
T ss_dssp -EEEEEETTTCCEE-EEEECCCCE---EEHHHHHHHHHHHHCSTT--EETTCCEEEEEECS-SCEEEEETTSC----EEE
T ss_pred -cceeEeccCCcee-ccccccccc---chhHHHHHHHHHhcccce--eecCcEEEEEEeeC-CceEEEECCCC----EEE
Confidence 0000000000000 000000000 111222222232 33556 89999999999887 88999998886 899
Q ss_pred eCEEEEeeCCCCCccc
Q 018550 155 FDAVVVCNGHFSVPRL 170 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~ 170 (354)
+|++|.|+|.++..+.
T Consensus 141 ~d~~v~adG~~s~~r~ 156 (265)
T d2voua1 141 ANWVIGADGGASVVRK 156 (265)
T ss_dssp ESEEEECCCTTCHHHH
T ss_pred EEEEeccccccccccc
Confidence 9999999997665554
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.34 E-value=4.2e-12 Score=92.78 Aligned_cols=94 Identities=21% Similarity=0.214 Sum_probs=74.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+-..+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~---------------------------------------- 69 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY---------------------------------------- 69 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc----------------------------------------
Confidence 3689999999999999999999999999999976431000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.. .++.+++++..++.|++ +++++++++++.++ ....+ ..++. ++++|.||+|
T Consensus 70 -----~d--------------~~~~~~~~~~l~~~gv~--~~~~~~v~~i~~~~-~~~~v-~~dg~----~i~~D~vi~a 122 (123)
T d1nhpa2 70 -----LD--------------KEFTDVLTEEMEANNIT--IATGETVERYEGDG-RVQKV-VTDKN----AYDADLVVVA 122 (123)
T ss_dssp -----CC--------------HHHHHHHHHHHHTTTEE--EEESCCEEEEECSS-BCCEE-EESSC----EEECSEEEEC
T ss_pred -----cc--------------hhhHHHHHHHhhcCCeE--EEeCceEEEEEcCC-CEEEE-EeCCC----EEECCEEEEE
Confidence 00 67888999999888999 99999999998643 32333 45554 8999999998
Q ss_pred e
Q 018550 162 N 162 (354)
Q Consensus 162 t 162 (354)
.
T Consensus 123 I 123 (123)
T d1nhpa2 123 V 123 (123)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.34 E-value=1.5e-14 Score=119.63 Aligned_cols=148 Identities=16% Similarity=0.105 Sum_probs=90.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-------CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP 74 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (354)
+++|+||||||||++||..|+++| ++|+|||+.+.+||.|++. +.|.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~g---------i~p~----------------- 55 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSG---------VAPD----------------- 55 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHT---------SCTT-----------------
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeec---------cCcc-----------------
Confidence 579999999999999999999987 4799999999999999762 1100
Q ss_pred cccccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
+.....+.++........+++ +++++++.... ...+ ....
T Consensus 56 ------------------------~~~~~~~~~~~~~~~~~~g~~--~~~~~~v~~~~---------~~~~-----~~~~ 95 (239)
T d1lqta2 56 ------------------------HPKIKSISKQFEKTAEDPRFR--FFGNVVVGEHV---------QPGE-----LSER 95 (239)
T ss_dssp ------------------------CTGGGGGHHHHHHHHTSTTEE--EEESCCBTTTB---------CHHH-----HHHH
T ss_pred ------------------------cccchhhhhhhhhhhccCCce--EEEEEEecccc---------chhh-----hhcc
Confidence 000134445555555556666 77776541100 0001 1347
Q ss_pred eCEEEEeeCCCCCcccCCCCCCCCC---CcceeecccCCCCC-------CCCCCeEEEEccCCCHHHHHHHHh
Q 018550 155 FDAVVVCNGHFSVPRLAQVPGIDSW---PGKQMHSHNYRIPN-------PFQDQVVILIGHYASGLDIKRDLA 217 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~p~~~g~~~~---~~~~~~~~~~~~~~-------~~~~~~v~ViG~G~~g~e~a~~l~ 217 (354)
||.+++|||. .+..+..++.... .............. ...+++++|+|+|..+++++..+.
T Consensus 96 ~~~v~~atGa--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v 166 (239)
T d1lqta2 96 YDAVIYAVGA--QSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLI 166 (239)
T ss_dssp SSEEEECCCC--CEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHH
T ss_pred ccceeeecCC--CccccccccccccccccchhhhhhhhccccccccceeecCCCEEEEeCCCchHHHHHHHHH
Confidence 8999999994 4555444444321 10000000000000 113567888888999999987664
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.34 E-value=7.6e-12 Score=91.40 Aligned_cols=98 Identities=23% Similarity=0.265 Sum_probs=79.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|||||+.|+.+|..+++.|.+|+++|+.+.+..
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~------------------------------------------ 62 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP------------------------------------------ 62 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------------
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc------------------------------------------
Confidence 47899999999999999999999999999999764410
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV 160 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vIl 160 (354)
... .++.+++.+.+++.|++ +++++++.+++..+ ++.+++.... .+++..+++|+|++
T Consensus 63 ---~~d---------------~~~~~~l~~~l~~~GI~--i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vLv 121 (123)
T d1dxla2 63 ---TMD---------------AEIRKQFQRSLEKQGMK--FKLKTKVVGVDTSG-DGVKLTVEPSAGGEQTIIEADVVLV 121 (123)
T ss_dssp ---TSC---------------HHHHHHHHHHHHHSSCC--EECSEEEEEEECSS-SSEEEEEEESSSCCCEEEEESEEEC
T ss_pred ---hhh---------------hcchhhhhhhhhcccce--EEcCCceEEEEEcc-CeEEEEEEECCCCeEEEEEcCEEEE
Confidence 000 77889999999999999 99999999999877 6666665432 23346789999998
Q ss_pred ee
Q 018550 161 CN 162 (354)
Q Consensus 161 At 162 (354)
|.
T Consensus 122 AA 123 (123)
T d1dxla2 122 SA 123 (123)
T ss_dssp CC
T ss_pred cC
Confidence 73
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.33 E-value=2e-13 Score=98.95 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=70.3
Q ss_pred ceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------ccccccCCCCC-CeEEecce
Q 018550 182 KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMV 250 (354)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v 250 (354)
+.+++.+..... ..|++++|||||++|+|+|..|++.|++||++++.+. +..++.+++.+ ++++++.|
T Consensus 7 ~~~~s~~~l~~~-~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V 85 (115)
T d1lvla2 7 PVISSTEALAPK-ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSV 85 (115)
T ss_dssp TEECHHHHTCCS-SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEE
T ss_pred cEECChHHhCcc-cCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEE
Confidence 344444443332 3569999999999999999999999999999999875 12333445555 89999999
Q ss_pred eEEecCCcEEE-ccC--cEEecCEEEEccc
Q 018550 251 ERANEDGTVVF-RNG--RVVSADVIMHCTG 277 (354)
Q Consensus 251 ~~v~~~~~v~~-~~g--~~~~~D~vi~a~G 277 (354)
++++.+..+.. .++ +++++|.|++|+|
T Consensus 86 ~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 86 EGYENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp EEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred EEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 99975543332 222 5799999999998
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=2.2e-11 Score=88.62 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=78.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
+++++|||||+.|+.+|..|++.|.+|+|++++ .+ ..
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~----l~-------------------------------------- 56 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL----LR-------------------------------------- 56 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SS----ST--------------------------------------
T ss_pred CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hh----hc--------------------------------------
Confidence 468999999999999999999999999999864 22 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCC---CcEEEEEeecCC-ceEEEEeCE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES---NKWKVKSRKKDD-VVEEETFDA 157 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~---~~~~v~~~~g~~-~~~~~~~d~ 157 (354)
.+ . .++.+++.+.+++.|++ +++++.|+++...++ +...++...+.+ +.....+|.
T Consensus 57 ~~----D--------------~~~~~~l~~~l~~~Gv~--i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~ 116 (122)
T d1h6va2 57 GF----D--------------QDMANKIGEHMEEHGIK--FIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNT 116 (122)
T ss_dssp TS----C--------------HHHHHHHHHHHHHTTEE--EEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESE
T ss_pred cC----C--------------HHHHHHHHHHHHHCCCE--EEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCE
Confidence 00 0 78899999999999999 999999999986532 345666665443 335678999
Q ss_pred EEEeeC
Q 018550 158 VVVCNG 163 (354)
Q Consensus 158 vIlAtG 163 (354)
|++|+|
T Consensus 117 vl~AiG 122 (122)
T d1h6va2 117 VLLAVG 122 (122)
T ss_dssp EECCCC
T ss_pred EEEEeC
Confidence 999998
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1.2e-13 Score=101.44 Aligned_cols=106 Identities=17% Similarity=0.228 Sum_probs=84.3
Q ss_pred CCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----ccccccC----C-CCC
Q 018550 172 QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQ----P-GYD 242 (354)
Q Consensus 172 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~~l----~-~~~ 242 (354)
.+||.++|.++.++++..++...+++++|+|||+|.+|+|.|..|++.+++|++++|++. +...+++ . ...
T Consensus 2 ~ipge~~~~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~~~~i 81 (126)
T d1trba2 2 GLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNI 81 (126)
T ss_dssp CCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSE
T ss_pred cCCCHHHhcCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccchhHHHHHHHHhhcccce
Confidence 467778888899998888888888999999999999999999999999999999999875 1122222 1 223
Q ss_pred CeEEecceeEEecCCc----EEEccC------cEEecCEEEEccc
Q 018550 243 NMWLHSMVERANEDGT----VVFRNG------RVVSADVIMHCTG 277 (354)
Q Consensus 243 ~~~~~~~v~~v~~~~~----v~~~~g------~~~~~D~vi~a~G 277 (354)
.++.++.+.++.+++. |++.|. +++++|.+|++.|
T Consensus 82 ~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 82 ILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp EEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred eEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 6778889999987653 556542 4689999999987
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.31 E-value=1.7e-12 Score=103.88 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=74.7
Q ss_pred eEEEEccCCCHHHHHHHHhcc--CCEEEEEEecCCcc---------------ccc--------cCCCCC-CeEEecceeE
Q 018550 199 VVILIGHYASGLDIKRDLAGF--AKEVHIASRSVADE---------------THE--------KQPGYD-NMWLHSMVER 252 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~~~~---------------~~~--------~l~~~~-~~~~~~~v~~ 252 (354)
+|+|||+|++|+|+|..|++. +.+|+++++.+... ... .+++.+ ++++++.|++
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~ 81 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA 81 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence 699999999999999999887 45799999865310 011 122333 7889999999
Q ss_pred EecCCc-EEEc---cC--cEEecCEEEEcccCCCcc-----CcccccCchhhh---------------hceeeeecccch
Q 018550 253 ANEDGT-VVFR---NG--RVVSADVIMHCTGLTGTS-----TTTLFLKPMALL---------------LWMTIVLGHCTS 306 (354)
Q Consensus 253 v~~~~~-v~~~---~g--~~~~~D~vi~a~G~~~~~-----p~~~~l~~~~~~---------------~~~i~a~GD~~~ 306 (354)
++.++. |++. +| .++++|.+++|+|..++. |++.+++..... ..+|||+|||+.
T Consensus 82 i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD~a~ 161 (198)
T d1nhpa1 82 IQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATL 161 (198)
T ss_dssp EETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGGSC
T ss_pred EeeccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEecceee
Confidence 986554 5543 34 357899999999987331 455555432211 234999999974
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.31 E-value=3.6e-13 Score=98.70 Aligned_cols=83 Identities=14% Similarity=0.164 Sum_probs=65.4
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCC--c---
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDG--T--- 258 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~--~--- 258 (354)
.++++++|||||++|+|+|..|++.|.+|+++.+++. +...+.+++.+ ++++++.+++++.++ .
T Consensus 20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~ 99 (121)
T d1mo9a2 20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQA 99 (121)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEE
Confidence 3579999999999999999999999999999999875 12233344455 899999999998553 2
Q ss_pred EE---EccCcEEecCEEEEccc
Q 018550 259 VV---FRNGRVVSADVIMHCTG 277 (354)
Q Consensus 259 v~---~~~g~~~~~D~vi~a~G 277 (354)
+. ..++++++||+||+|+|
T Consensus 100 ~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 100 VVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEEEETTEEEEEECSCEEECCC
T ss_pred EEEEeCCCCEEEEcCEEEEEEC
Confidence 11 12347899999999998
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=6.4e-13 Score=99.34 Aligned_cols=83 Identities=20% Similarity=0.256 Sum_probs=68.2
Q ss_pred CCCeEEEEccCCCHHHHHHHHhc----cCCEEEEEEecCC-----------ccccccCCCCC-CeEEecceeEEecCCc-
Q 018550 196 QDQVVILIGHYASGLDIKRDLAG----FAKEVHIASRSVA-----------DETHEKQPGYD-NMWLHSMVERANEDGT- 258 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~----~g~~v~~~~r~~~-----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~- 258 (354)
.+++++|||||++|+|+|..|++ .|.+|+++.+.+. ....+.+++.+ ++++++.|++++.++.
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~ 115 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGK 115 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTE
T ss_pred cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCE
Confidence 46899999999999999999964 5889999999774 12233445666 9999999999986542
Q ss_pred --EEEccCcEEecCEEEEcccC
Q 018550 259 --VVFRNGRVVSADVIMHCTGL 278 (354)
Q Consensus 259 --v~~~~g~~~~~D~vi~a~G~ 278 (354)
++++||+++++|+||||+|.
T Consensus 116 ~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 116 LLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp EEEEETTSCEEEESEEEECCCE
T ss_pred EEEEECCCCEEECCEEEEeecC
Confidence 88899999999999999994
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.31 E-value=5.5e-13 Score=96.78 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=64.8
Q ss_pred CCCeEEEEccCCCHHHHHHHHhcc---CCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEec--CCc-
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGF---AKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANE--DGT- 258 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~---g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~--~~~- 258 (354)
.+++++|||||++|+|+|..+... +.+||++.+.+. ....+.+++.+ ++++++.+++++. ++.
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~ 98 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSK 98 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCE
T ss_pred cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeE
Confidence 578999999999999999877655 457999999875 22333445555 9999999999974 333
Q ss_pred -EEEccCcEEecCEEEEcc
Q 018550 259 -VVFRNGRVVSADVIMHCT 276 (354)
Q Consensus 259 -v~~~~g~~~~~D~vi~a~ 276 (354)
+++++|++++||+||||.
T Consensus 99 ~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 99 SVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp EEEETTSCEEEESEEEECS
T ss_pred EEEECCCcEEEeCEEEEeC
Confidence 788999999999999984
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.30 E-value=5.6e-12 Score=108.02 Aligned_cols=163 Identities=18% Similarity=0.157 Sum_probs=90.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC---------CCCCCC----------Cccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL---------GVDPNR----------YPVH 62 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~---------~~~~~~----------~~~~ 62 (354)
.+||+|||+|++|+++|+.|+++|.+|+||||.+..||....+.+...... ...+.. ...+
T Consensus 16 ~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d 95 (308)
T d1y0pa2 16 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND 95 (308)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccc
Confidence 379999999999999999999999999999998877765444322110000 000000 0000
Q ss_pred ccccccchhcccccccccc--CCCCCccCCC--CCC----CCC-CCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEE
Q 018550 63 SSLYKSLRVNLPRELMGFQ--AYPFVARNYE--GSV----DLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133 (354)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~----~~~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~ 133 (354)
..+...+..+.+.....+. +.++...... ... ... .......+...+.+.+.+.++. ++++++++++..
T Consensus 96 ~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~--i~~~~~v~~li~ 173 (308)
T d1y0pa2 96 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNID--LRMNTRGIEVLK 173 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEE
T ss_pred hHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccce--EEEeeccchhhh
Confidence 0000011111111000000 1111110000 000 000 0111245677777778888998 999999999988
Q ss_pred eCCCc-EEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 134 VESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 134 ~~~~~-~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
++++. .-+...+..+....+.++.||+|||.++
T Consensus 174 ~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~ 207 (308)
T d1y0pa2 174 DDKGTVKGILVKGMYKGYYWVKADAVILATGGFA 207 (308)
T ss_dssp CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred hcccccccccccccccceeEeecCeEEEccCccc
Confidence 76443 3456665555567899999999999654
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.30 E-value=5e-13 Score=97.85 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=69.9
Q ss_pred ceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------ccccccCCCCC-CeEEecce
Q 018550 182 KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMV 250 (354)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v 250 (354)
.++++...... ...|++++|||+|++|+|+|..+++.|.+||++.|++. +...+.+++.+ ++++++.+
T Consensus 11 ~v~ts~~~l~l-~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v 89 (123)
T d1dxla2 11 KIVSSTGALAL-SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKV 89 (123)
T ss_dssp SEECHHHHTTC-SSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred eEEeHHHhhCc-cccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCce
Confidence 34455444433 33579999999999999999999999999999999885 23344455665 99999999
Q ss_pred eEEecCCc---EEEc---cC--cEEecCEEEEcc
Q 018550 251 ERANEDGT---VVFR---NG--RVVSADVIMHCT 276 (354)
Q Consensus 251 ~~v~~~~~---v~~~---~g--~~~~~D~vi~a~ 276 (354)
++++.++. +.+. +| ++++||+|++|.
T Consensus 90 ~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 90 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp EEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred EEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 99985432 3332 23 458999999874
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=4.9e-13 Score=98.24 Aligned_cols=82 Identities=12% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------ccccccCCCCC-CeEEecceeEEecCCc---EEE
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVERANEDGT---VVF 261 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~---v~~ 261 (354)
.+++++|||+|++|+|+|..|++.|.+||++.|++. +...+.+++.+ +++.++.++++++++. +.+
T Consensus 21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~ 100 (125)
T d3grsa2 21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSM 100 (125)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEE
T ss_pred cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEE
Confidence 468999999999999999999999999999999875 22333445555 9999999999975432 222
Q ss_pred ---ccC------cEEecCEEEEccc
Q 018550 262 ---RNG------RVVSADVIMHCTG 277 (354)
Q Consensus 262 ---~~g------~~~~~D~vi~a~G 277 (354)
.+| ..+++|.||||+|
T Consensus 101 ~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 101 VTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EECCTTSCCEEEEEEEESEEEECSC
T ss_pred EEccCCcCcCccccccCCEEEEEeC
Confidence 233 2467999999998
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.28 E-value=8.7e-13 Score=101.23 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=91.4
Q ss_pred EeeCCCCCcccC-CCCCCCCCCcceeecccCCCCCCCCCCeEEEE--ccCCCHHHHHHHHhccCCEEEEEEecCC-----
Q 018550 160 VCNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILI--GHYASGLDIKRDLAGFAKEVHIASRSVA----- 231 (354)
Q Consensus 160 lAtG~~s~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~Vi--G~G~~g~e~a~~l~~~g~~v~~~~r~~~----- 231 (354)
.||| +.|..| ++||.+.-...++++.+........++.++|+ |||++|+|+|..|+++|++||++++.+.
T Consensus 3 ~atG--~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~ 80 (156)
T d1djqa2 3 NTDG--TNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMH 80 (156)
T ss_dssp CSSC--CCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHH
T ss_pred cCCC--CCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccccc
Confidence 3899 777776 68998753234555555544455556777776 9999999999999999999999999875
Q ss_pred -----ccccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEcccCCCccCcccccCchhh
Q 018550 232 -----DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMAL 293 (354)
Q Consensus 232 -----~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~~ 293 (354)
...+++|.+.+ ++++++.+.+++.++ +.+.+......+.++.++|.. |+....+....
T Consensus 81 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-v~l~~~~~~~~~~v~~~~g~~---~~~~~~~~~~l 144 (156)
T d1djqa2 81 FTLEYPNMMRRLHELHVEELGDHFCSRIEPGR-MEIYNIWGDGSKRTYRGPGVS---PRDANTSHRWI 144 (156)
T ss_dssp HTTCHHHHHHHHHHTTCEEEETEEEEEEETTE-EEEEETTCSCSCCCCCCTTSC---SSCCCCCCEEE
T ss_pred chhHHHHHHHHHhhccceEEeccEEEEecCcc-eEEEeeeccccceeeeeeEEE---ecccCCccCcE
Confidence 22344454555 999999999998776 666665555567777777777 55555444443
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.27 E-value=1.2e-12 Score=95.67 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=68.1
Q ss_pred eeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------ccccccCCCCC-CeEEeccee
Q 018550 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMVE 251 (354)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v~ 251 (354)
.+++.+..+.. ..+++++|||+|++|+|+|..|++.|.+||++.+++. +...+.+++.+ ++++++.++
T Consensus 10 v~ts~~~~~l~-~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~ 88 (122)
T d1v59a2 10 IVSSTGALSLK-EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVI 88 (122)
T ss_dssp EECHHHHTTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred EEehHHhhCcc-cCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEE
Confidence 44444433332 3579999999999999999999999999999999885 22333445566 999999999
Q ss_pred EEecC--Cc---EEEccC-----cEEecCEEEEc
Q 018550 252 RANED--GT---VVFRNG-----RVVSADVIMHC 275 (354)
Q Consensus 252 ~v~~~--~~---v~~~~g-----~~~~~D~vi~a 275 (354)
+++.+ +. +++.++ +++++|.|++|
T Consensus 89 ~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 89 SAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred EEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 99743 32 344443 47899999986
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.27 E-value=1.2e-12 Score=95.10 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=68.9
Q ss_pred ceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----------ccccccCCCCC-CeEEecce
Q 018550 182 KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------DETHEKQPGYD-NMWLHSMV 250 (354)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------~~~~~~l~~~~-~~~~~~~v 250 (354)
+++++.+..... ..|++++|||||++|+|+|..+++.|.+||++.+.+. +...+.+++.+ ++++++.+
T Consensus 8 ~i~~s~~~l~~~-~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v 86 (117)
T d1ebda2 8 RILDSTGALNLG-EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALA 86 (117)
T ss_dssp SEECHHHHHTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred CEEChhHhhChh-hcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEE
Confidence 345554443332 3579999999999999999999999999999999885 12233444555 99999999
Q ss_pred eEEecCCc---EEEc-cC--cEEecCEEEEc
Q 018550 251 ERANEDGT---VVFR-NG--RVVSADVIMHC 275 (354)
Q Consensus 251 ~~v~~~~~---v~~~-~g--~~~~~D~vi~a 275 (354)
++++.++. +++. +| +++++|.||++
T Consensus 87 ~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 87 KGAEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred EEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 99985432 4443 34 57899999974
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.27 E-value=4.7e-12 Score=99.78 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=60.7
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccC--CEEEEEEecCC-------------cccccc-------CCCCCCeEEecceeEE
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFA--KEVHIASRSVA-------------DETHEK-------QPGYDNMWLHSMVERA 253 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g--~~v~~~~r~~~-------------~~~~~~-------l~~~~~~~~~~~v~~v 253 (354)
.+|+|+|||+|++|+|+|..|.+.+ .+|+++++.+. ...... +...........+..+
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 80 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGI 80 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEEC
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEee
Confidence 3789999999999999999999887 47999988774 000000 0111212223333333
Q ss_pred ecC-CcEEEccCcEEecCEEEEcccCCCccCccccc
Q 018550 254 NED-GTVVFRNGRVVSADVIMHCTGLTGTSTTTLFL 288 (354)
Q Consensus 254 ~~~-~~v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l 288 (354)
... ..+.+.+++++++|.+|+|||.+ |+.+++
T Consensus 81 ~~~~~~~~~~~~~~i~~D~li~atG~~---~~~~~i 113 (186)
T d1fcda1 81 DPDKKLVKTAGGAEFGYDRCVVAPGIE---LIYDKI 113 (186)
T ss_dssp CTTTTEEEETTSCEEECSEEEECCCEE---ECCTTS
T ss_pred eeccceeecccceeeccceEEEEeccc---cchhhh
Confidence 333 33777888999999999999999 555444
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.27 E-value=1.2e-11 Score=90.25 Aligned_cols=88 Identities=24% Similarity=0.305 Sum_probs=71.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA 82 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
++++|||||+.|+.+|..|+++|.+|+++|+.+.+.+ .
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~---~--------------------------------------- 70 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG---L--------------------------------------- 70 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT---C---------------------------------------
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC---C---------------------------------------
Confidence 6899999999999999999999999999998764310 0
Q ss_pred CCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEee
Q 018550 83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN 162 (354)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAt 162 (354)
. .++.+++.+.+.+.|++ +++++++.++.. + . +. .++ ..+++|.||+|+
T Consensus 71 -----d--------------~~~~~~~~~~l~~~GV~--~~~~~~v~~~~~---~-~-v~-~~~----~~i~~D~vi~a~ 119 (122)
T d1xhca2 71 -----D--------------EELSNMIKDMLEETGVK--FFLNSELLEANE---E-G-VL-TNS----GFIEGKVKICAI 119 (122)
T ss_dssp -----C--------------HHHHHHHHHHHHHTTEE--EECSCCEEEECS---S-E-EE-ETT----EEEECSCEEEEC
T ss_pred -----C--------------HHHHHHHHHHHHHCCcE--EEeCCEEEEEeC---C-E-EE-eCC----CEEECCEEEEEE
Confidence 0 77888888999999998 999999988853 2 2 22 233 389999999999
Q ss_pred C
Q 018550 163 G 163 (354)
Q Consensus 163 G 163 (354)
|
T Consensus 120 G 120 (122)
T d1xhca2 120 G 120 (122)
T ss_dssp C
T ss_pred E
Confidence 9
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.26 E-value=2.1e-11 Score=103.51 Aligned_cols=161 Identities=17% Similarity=0.157 Sum_probs=86.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhc-ccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVN-LPREL 77 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~ 77 (354)
|+.+|+||||||+|+++|..|+++|++|+|+||.+..+..-. ++.. .+.|.. .+..-..++.+... .+...
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~--~~~~----~l~~~~~~~l~~lg~~~~l~~~~~~~~~ 74 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGR--IRAG----VLEQGMVDLLREAGVDRRMARDGLVHEG 74 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTC--CCCC----EECHHHHHHHHHTTCCHHHHHHCEEESC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCC--ceEE----EECHHHHHHHHHcCchHHHHhhcccccc
Confidence 788999999999999999999999999999999753210000 0000 000000 00000011111100 00000
Q ss_pred ccccCCCCCccCC--C-CCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEE
Q 018550 78 MGFQAYPFVARNY--E-GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET 154 (354)
Q Consensus 78 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~ 154 (354)
+.+.+........ . ..........+..+.+.+.+.+...+.. +.+...++.....+++...++..++ +++.++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~-g~~~~i~ 151 (292)
T d1k0ia1 75 VEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQGERPYVTFERD-GERLRLD 151 (292)
T ss_dssp EEEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTTSSSCEEEEEET-TEEEEEE
T ss_pred eEEEecccccccccccccccccceeecHHHHHHHHHHHHHhCCCc--EEEcceeeeeeeeccCceEEEEecC-CcEEEEE
Confidence 0000000000000 0 0001111234577888888888887776 6776766666554446677766553 2345789
Q ss_pred eCEEEEeeCCCCCccc
Q 018550 155 FDAVVVCNGHFSVPRL 170 (354)
Q Consensus 155 ~d~vIlAtG~~s~~~~ 170 (354)
+|+||.|+|.+|..+.
T Consensus 152 a~~vVgADG~~S~vR~ 167 (292)
T d1k0ia1 152 CDYIAGCDGFHGISRQ 167 (292)
T ss_dssp CSEEEECCCTTCSTGG
T ss_pred eCEEEECCCCCCcccc
Confidence 9999999998776654
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.25 E-value=2.3e-12 Score=94.57 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=83.1
Q ss_pred CCCCCCCC----CCcceeecccCCCC--CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC----ccccccCCC
Q 018550 171 AQVPGIDS----WPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQPG 240 (354)
Q Consensus 171 p~~~g~~~----~~~~~~~~~~~~~~--~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----~~~~~~l~~ 240 (354)
+.+||..+ |.++.++++..++. ..+++++|+|||+|.+|+|.|..|++..++|++++|++. +...+++.+
T Consensus 2 l~~pGe~E~~~~f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~~~~l~~ 81 (130)
T d1vdca2 2 LSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALS 81 (130)
T ss_dssp CCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHT
T ss_pred CCCCccccccccccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccchhhhhcccc
Confidence 35677665 77899999888885 378999999999999999999999999999999999875 223444544
Q ss_pred CC--CeEEecceeEEecCCc------EEEcc---C--cEEecCEEEEcc
Q 018550 241 YD--NMWLHSMVERANEDGT------VVFRN---G--RVVSADVIMHCT 276 (354)
Q Consensus 241 ~~--~~~~~~~v~~v~~~~~------v~~~~---g--~~~~~D~vi~a~ 276 (354)
.. ++++++.+.++.+++. +++.| + +++++|.+|+++
T Consensus 82 ~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 82 NPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp CTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred CCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 44 7788999999987642 44433 3 578999999874
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.24 E-value=4.8e-13 Score=106.90 Aligned_cols=42 Identities=33% Similarity=0.485 Sum_probs=38.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~~ 43 (354)
+++|+||||||+|+++|..|+++|+ +|+|||+.+.+++.+..
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~ 46 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS 46 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhh
Confidence 5899999999999999999999998 59999999998887765
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2.1e-11 Score=96.69 Aligned_cols=110 Identities=19% Similarity=0.327 Sum_probs=79.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.+||+||||||+|+.||..|++.|.+|+|||+.+ .++.+....... .+.
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~-~~g~~~~~~~i~------------------------------~~~ 53 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVE------------------------------NWP 53 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TTGGGGGCSBCC------------------------------CST
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec-ccccccccchhh------------------------------hhh
Confidence 3689999999999999999999999999999864 455554421110 000
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEe
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC 161 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlA 161 (354)
.++ ......++.+.....+.++++. +.. .+|+.+...+ +.+.++.... .+.++.+++|
T Consensus 54 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~--~~~-~~V~~~~~~~-~~~~v~~~~~-----~~~~~~viva 111 (190)
T d1trba1 54 GDP-------------NDLTGPLLMERMHEHATKFETE--IIF-DHINKVDLQN-RPFRLNGDNG-----EYTCDALIIA 111 (190)
T ss_dssp TCC-------------SSCBHHHHHHHHHHHHHHTTCE--EEC-CCEEEEECSS-SSEEEEESSC-----EEEEEEEEEC
T ss_pred ccc-------------cccchHHHHHHHHHHHHhcCcE--Eec-ceeEEEecCC-CcEEEEEeee-----eEeeeeeeee
Confidence 111 1112377888888888888887 555 5788888766 7777776653 7899999999
Q ss_pred eCC
Q 018550 162 NGH 164 (354)
Q Consensus 162 tG~ 164 (354)
+|.
T Consensus 112 ~G~ 114 (190)
T d1trba1 112 TGA 114 (190)
T ss_dssp CCE
T ss_pred cce
Confidence 994
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.23 E-value=1.5e-11 Score=106.08 Aligned_cols=162 Identities=24% Similarity=0.225 Sum_probs=90.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCC-------CCC--CCCC----------Ccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGV--DPNR----------YPVHS 63 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~-------~~~--~~~~----------~~~~~ 63 (354)
.||+|||+|++|+++|+.|+++|.+|+|+||.+..||......+..... .+. .++. .+.+.
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~ 103 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP 103 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCH
Confidence 6899999999999999999999999999999887776554432211000 000 0000 00000
Q ss_pred cccccchhcccccccccc--CCCCCccC-CCC-CC-----CCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 64 SLYKSLRVNLPRELMGFQ--AYPFVARN-YEG-SV-----DLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
.....+....+.....+. +.++.... ... .. ..........+.+.+.+.+.+.+++ ++++++|+++..+
T Consensus 104 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~--i~~~t~v~~li~d 181 (322)
T d1d4ca2 104 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTD--IRLNSRVVRILED 181 (322)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCE--EETTEEEEEEECC
T ss_pred HHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCce--EEEeeeccccccc
Confidence 000011111111000000 11111100 000 00 0011123467788888888888998 9999999999886
Q ss_pred CCCc-EEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 135 ESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 135 ~~~~-~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
+++. .-+...+..+....+.++.||+|||.++
T Consensus 182 ~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~ 214 (322)
T d1d4ca2 182 ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA 214 (322)
T ss_dssp SSSCCCEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred ccccccceEEEeecccEEEEeCCeEEEcCCCcc
Confidence 5333 3344444444456799999999999654
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=99.23 E-value=2.3e-11 Score=105.59 Aligned_cols=41 Identities=41% Similarity=0.603 Sum_probs=38.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
.++|+|||||++|+++|..|+++|++|+|||+++.+||.+.
T Consensus 30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~ 70 (370)
T d2iida1 30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR 70 (370)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeE
Confidence 47999999999999999999999999999999999998654
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=2e-12 Score=94.28 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=63.2
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---------ccccccCCCCC-CeEEecceeEEec--C---Cc--
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---------DETHEKQPGYD-NMWLHSMVERANE--D---GT-- 258 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---------~~~~~~l~~~~-~~~~~~~v~~v~~--~---~~-- 258 (354)
.|++++|||+|++|+|+|..|++.|.+||++.++.. +..++.|++.+ ++++++.|++++. + +.
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~ 98 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLK 98 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEE
T ss_pred CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEE
Confidence 568999999999999999999999999999997643 23344455666 9999999998863 2 12
Q ss_pred EEEccC-----cEEecCEEEEccc
Q 018550 259 VVFRNG-----RVVSADVIMHCTG 277 (354)
Q Consensus 259 v~~~~g-----~~~~~D~vi~a~G 277 (354)
+++.++ ..+++|.|++|+|
T Consensus 99 v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 99 VTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEECTTSCEEEEEEESEEECCCC
T ss_pred EEEEECCCCcEEEEECCEEEEEeC
Confidence 444432 3457999999998
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.23 E-value=4.3e-12 Score=104.11 Aligned_cols=143 Identities=17% Similarity=0.212 Sum_probs=82.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC---CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g---~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (354)
.+|+||||||||++||..+++.+ .+|+++|+ ..+||+|.+. +|+|.|.++..........+.+.....
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln~--------GciPsK~ll~~a~~~~~~~~~~~~G~~ 72 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVLD--------DCVPSKTFIASTGLRTELRRAPHLGFH 72 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHHT--------SHHHHHHHHHHHHHHHHHTTTTTTTBC
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeecc--------cccccEEEEeecchhhhhhhhhhcCCc
Confidence 47999999999999999988876 47999998 4899999884 888887665543322222222211111
Q ss_pred ccCCCCCccCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCcceEEeceEEEEEEEeC-CCcEEEEEeecC
Q 018550 80 FQAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRKKD 147 (354)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~v~~~~~v~~i~~~~-~~~~~v~~~~g~ 147 (354)
+ .... .-.++..+. ..+.......+++ +..+ +...+.... .....+.....+
T Consensus 73 i---~~~~----------~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~--vi~G-~~~~~~~~~~~~~~~v~v~~~d 136 (233)
T d1xdia1 73 I---DFDD----------AKISLPQIHARVKTLAAAQSADITAQLLSMGVQ--VIAG-RGELIDSTPGLARHRIKATAAD 136 (233)
T ss_dssp -------------------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-EEEECCSSSCCSSEEEEEECTT
T ss_pred c---cccC----------ceeeeeeeccccceeeeeeecceehhhccccee--EEEC-cccccccccccccceEEEEecC
Confidence 1 0000 001112222 2233444555776 5543 222222111 023445544444
Q ss_pred CceEEEEeCEEEEeeCCCCCcccCC
Q 018550 148 DVVEEETFDAVVVCNGHFSVPRLAQ 172 (354)
Q Consensus 148 ~~~~~~~~d~vIlAtG~~s~~~~p~ 172 (354)
++..++++|.+|+||| +.|+.++
T Consensus 137 g~~~~i~ad~viiAtG--~~p~~~~ 159 (233)
T d1xdia1 137 GSTSEHEADVVLVATG--ASPRILP 159 (233)
T ss_dssp SCEEEEEESEEEECCC--EEECCCG
T ss_pred CceeeeecceeeeecC--ccccccc
Confidence 4467899999999999 7776554
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.22 E-value=3e-11 Score=96.80 Aligned_cols=120 Identities=17% Similarity=0.101 Sum_probs=71.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC-CccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.|||+||||||||+.||..+++.|.++.||+++- .+|..+.+ |...... ..+...
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cn------------p~~gg~~----kg~l~r-------- 57 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLP------------PKPPFPP----GSLLER-------- 57 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSC------------CCSCCCT----TCHHHH--------
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccC------------CccccCC----Ccceee--------
Confidence 5899999999999999999999999999999852 23322221 1100000 000000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vI 159 (354)
.. ...-|.-..+...+++.+.. .++. .++.+|+++..+++....|.+.+|. ++.++.||
T Consensus 58 -ei------------d~kG~av~a~raQ~k~~l~~~~nL~---i~q~~V~dli~e~~~v~gV~t~~G~----~~~AkaVI 117 (230)
T d2cula1 58 -AY------------DPKDERVWAFHARAKYLLEGLRPLH---LFQATATGLLLEGNRVVGVRTWEGP----PARGEKVV 117 (230)
T ss_dssp -HC------------CTTCCCHHHHHHHHHHHHHTCTTEE---EEECCEEEEEEETTEEEEEEETTSC----CEECSEEE
T ss_pred -ee------------eccchhhhhHHHHHHHHHhhhcCHH---HHhccceeeEecccceeeEEecccc----EEEEeEEE
Confidence 00 00011112333333333333 3454 4457888888876345567787775 89999999
Q ss_pred EeeCCC
Q 018550 160 VCNGHF 165 (354)
Q Consensus 160 lAtG~~ 165 (354)
+|||.+
T Consensus 118 LtTGTF 123 (230)
T d2cula1 118 LAVGSF 123 (230)
T ss_dssp ECCTTC
T ss_pred EccCcc
Confidence 999954
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=9.6e-12 Score=98.09 Aligned_cols=111 Identities=17% Similarity=0.230 Sum_probs=73.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.|||+||||||+|+.||..+++.|.+|++||++ +|+.+....... .+.
T Consensus 1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~~~~~~------------------------------~~~ 48 (184)
T d1fl2a1 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDIE------------------------------NYI 48 (184)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCCEEC------------------------------CBT
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccccccce------------------------------ecc
Confidence 479999999999999999999999999999974 577666521100 011
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCC--cEEEEEeecCCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN--KWKVKSRKKDDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~--~~~v~~~~g~~~~~~~~~d~vI 159 (354)
.++... ...+...++..+++++.+ ......+..+...... .+.....+. ..+.++.++
T Consensus 49 ~~~~~~--------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 108 (184)
T d1fl2a1 49 SVPKTE--------------GQKLAGALKVHVDEYDVD--VIDSQSASKLIPAAVEGGLHQIETASG----AVLKARSII 108 (184)
T ss_dssp TBSSEE--------------HHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTCCEEEEETTS----CEEEEEEEE
T ss_pred ccchhh--------------hHHHHHHHHHHhhheece--eeccceeeeecccccccceeeeeeecc----eeeeccccc
Confidence 111111 156667777777777666 6666666666654322 233333333 378999999
Q ss_pred EeeCC
Q 018550 160 VCNGH 164 (354)
Q Consensus 160 lAtG~ 164 (354)
+++|.
T Consensus 109 ~~~g~ 113 (184)
T d1fl2a1 109 VATGA 113 (184)
T ss_dssp ECCCE
T ss_pred ccccc
Confidence 99994
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.21 E-value=1.6e-10 Score=97.29 Aligned_cols=154 Identities=18% Similarity=0.106 Sum_probs=84.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceeecCCCCCCCCCCCCCCC--Ccccccccccchhccc--cc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNR--YPVHSSLYKSLRVNLP--RE 76 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~ 76 (354)
+.||+|||||++|+++|..|+++|+ +|+|+|+.+.+.....-- .+.|.. .+.....++.+..... ..
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i--------~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 72 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGI--------NIQPAAVEALAELGLGPALAATAIPTHE 72 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEE--------EECHHHHHHHHHTTCHHHHHHHSEEECE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEE--------EECHHHHHHHHHcCchhhhHhhhccccc
Confidence 3689999999999999999999997 899999987654221100 000000 0000000111110000 00
Q ss_pred ccccc-------CCCCCccCCCCCCCCC-CCCCHHHHHHHHHHHH--HHhCCcceEEeceEEEEEEEeCCCcEEEEEeec
Q 018550 77 LMGFQ-------AYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFA--REFGVDQVVRLHTEVLNARLVESNKWKVKSRKK 146 (354)
Q Consensus 77 ~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~--~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g 146 (354)
...+. .++.... ...... ...........+.... ...+.. +.++.+++.+...+ +...++..++
T Consensus 73 ~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~v~v~~~~g 146 (288)
T d3c96a1 73 LRYIDQSGATVWSEPRGVE---AGNAYPQYSIHRGELQMILLAAVRERLGQQA--VRTGLGVERIEERD-GRVLIGARDG 146 (288)
T ss_dssp EEEECTTSCEEEEEECGGG---GTCSSCEEEEEHHHHHHHHHHHHHHHHCTTS--EEESEEEEEEEEET-TEEEEEEEET
T ss_pred ceeEcCCCCEEEecccccc---ccccCcccccchhhhHHHHHHHHHHhccCee--eecCcEEEEeeecC-CcEEEEEEcC
Confidence 00000 0000000 000000 0011122222222222 223566 88999999999887 8889999998
Q ss_pred CCceEEEEeCEEEEeeCCCCCcc
Q 018550 147 DDVVEEETFDAVVVCNGHFSVPR 169 (354)
Q Consensus 147 ~~~~~~~~~d~vIlAtG~~s~~~ 169 (354)
.+..+++.+|++|.|+|.+|..+
T Consensus 147 ~~~~~~~~ad~vi~ADG~~S~vr 169 (288)
T d3c96a1 147 HGKPQALGADVLVGADGIHSAVR 169 (288)
T ss_dssp TSCEEEEEESEEEECCCTTCHHH
T ss_pred CCCeEEEeeceeeccCCccceee
Confidence 77778999999999999776544
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.21 E-value=2.5e-12 Score=104.72 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=40.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~ 44 (354)
.|||+||||||||+++|..+++.|.+|+|||+++.+||.|.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~ 45 (221)
T d1dxla1 3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV 45 (221)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecc
Confidence 6899999999999999999999999999999999999998763
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.20 E-value=5.1e-11 Score=102.34 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=91.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCC---CC----CCCC--CCC----------Ccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES---DP----LGVD--PNR----------YPVHS 63 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~---~~----~~~~--~~~----------~~~~~ 63 (354)
.||+|||+|++|+++|+.|+++|.+|+|+||.+..||....+.+..+ .+ .+.. ++. ...+.
T Consensus 20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~ 99 (317)
T d1qo8a2 20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI 99 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccch
Confidence 68999999999999999999999999999998777655433322110 00 0000 000 00000
Q ss_pred cccccchhcccccccccc--CCCCCccCCC-CCCCC------CCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEe
Q 018550 64 SLYKSLRVNLPRELMGFQ--AYPFVARNYE-GSVDL------RRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV 134 (354)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~ 134 (354)
.+...+....+.....+. +.++...... ..... ........+...+.+.+++.++. ++++++++++..+
T Consensus 100 ~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~--i~~~~~v~~l~~~ 177 (317)
T d1qo8a2 100 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGID--TRLNSRVVKLVVN 177 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCC--EECSEEEEEEEEC
T ss_pred hHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccce--eeeccchhheeec
Confidence 011111111111110010 1111110000 00000 01122356888888889999999 9999999999876
Q ss_pred CCCc-EEEEEeecCCceEEEEeCEEEEeeCCCC
Q 018550 135 ESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFS 166 (354)
Q Consensus 135 ~~~~-~~v~~~~g~~~~~~~~~d~vIlAtG~~s 166 (354)
+++. ..+...+.++....+.++.||+|||.++
T Consensus 178 ~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~ 210 (317)
T d1qo8a2 178 DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG 210 (317)
T ss_dssp TTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred ccccceeeEeecccceEEEEeccceEEeccccc
Confidence 5343 3355555555556789999999999654
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.20 E-value=3.6e-12 Score=106.54 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=47.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 63 (354)
.+|++|||||++|+.+|..+++.|.+|+++|+.+.+||.|.+. +|.|.+.+...
T Consensus 42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~--------GcvP~k~l~~~ 95 (261)
T d1mo9a1 42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHN--------ACVPHHLFSDC 95 (261)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHH--------SHHHHHHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccc--------cccchHHHHhh
Confidence 4789999999999999999999999999999999999999874 77776655443
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.20 E-value=4.2e-12 Score=103.31 Aligned_cols=54 Identities=24% Similarity=0.417 Sum_probs=46.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 63 (354)
+++||+||||||+|+.+|..+++.|.+|+|+|++ .+||+|.+. +|.|.+.+...
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~~~--------gc~p~k~~~~~ 57 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNI--------GCIPSKALIHV 57 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHH--------SHHHHHHHHHH
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccccc--------ccccchhhhhh
Confidence 3689999999999999999999999999999985 799999884 77777655543
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=99.19 E-value=1.4e-11 Score=105.39 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCC
Q 018550 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167 (354)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~ 167 (354)
....+...+.+.+.+.|++ +..+++|+++..+++..+.|.+.+| +++||.||+|+|.|+.
T Consensus 146 ~p~~l~~~l~~~a~~~gv~--i~~~~~V~~i~~~~~~v~~V~T~~g-----~i~a~~VV~aaG~~s~ 205 (305)
T d1pj5a2 146 SAARAVQLLIKRTESAGVT--YRGSTTVTGIEQSGGRVTGVQTADG-----VIPADIVVSCAGFWGA 205 (305)
T ss_dssp CHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTE-----EEECSEEEECCGGGHH
T ss_pred chhhhhhhHHhhhhccccc--ccCCceEEEEEEeCCEEEEEeccce-----eEECCEEEEecchhHH
Confidence 3467888888888889999 9999999999998733344666654 7999999999998654
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.19 E-value=3.2e-11 Score=103.17 Aligned_cols=40 Identities=38% Similarity=0.625 Sum_probs=37.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
+||+|||||++|+++|..|+++|++|+|+|+++.+||.+.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 40 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVG 40 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEE
Confidence 5799999999999999999999999999999999998654
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=3.6e-12 Score=98.40 Aligned_cols=109 Identities=21% Similarity=0.249 Sum_probs=75.0
Q ss_pred cccCCCCCCCCCCcceeecccCCCCCCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEE--------------------
Q 018550 168 PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS-------------------- 227 (354)
Q Consensus 168 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~-------------------- 227 (354)
|+.|++||.+. ..+++..++.......+++|+|||||++|+|+|..+++.|.+++...
T Consensus 2 Pr~p~IpG~d~--~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T d1ps9a2 2 PRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLS 79 (162)
T ss_dssp ECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBC
T ss_pred CCCCCCCCCCC--CCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccc
Confidence 78899999875 35666666666666789999999999999999999999986532221
Q ss_pred -----------------ecCC-----------ccccccCCCCC-CeEEecceeEEecCCcEEEccC--cEEecCEEEEcc
Q 018550 228 -----------------RSVA-----------DETHEKQPGYD-NMWLHSMVERANEDGTVVFRNG--RVVSADVIMHCT 276 (354)
Q Consensus 228 -----------------r~~~-----------~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g--~~~~~D~vi~a~ 276 (354)
.... ...+..++..+ +++.++.+.++.+++.....+| .+++||+||+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~ 159 (162)
T d1ps9a2 80 PQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICA 159 (162)
T ss_dssp TTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECC
T ss_pred cccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECC
Confidence 1110 00001111222 5778889999988874333445 458999999999
Q ss_pred cC
Q 018550 277 GL 278 (354)
Q Consensus 277 G~ 278 (354)
|+
T Consensus 160 Gq 161 (162)
T d1ps9a2 160 GQ 161 (162)
T ss_dssp CE
T ss_pred CC
Confidence 96
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=1.7e-11 Score=100.71 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=42.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC--------ccceeecCCCCCCCCCCCCCCCCccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ--------VGGSWIYTSETESDPLGVDPNRYPVHSS 64 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~--------~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (354)
.|||+||||||||++||..+++.|.+|+|||+.+. +||.|... +|.|.+.+....
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~--------g~~~~k~l~~~~ 65 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNV--------GCIPKKLMHQAA 65 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHH--------SHHHHHHHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccc--------cccchhhhhhhh
Confidence 47999999999999999999999999999997543 45555542 566555444433
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.11 E-value=1.1e-10 Score=92.53 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=77.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc----cceeecCCCCCCCCCCCCCCCCcccccccccchhcccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL 77 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (354)
.++|+||||||+|+.||..|++.|.+++++|+.... ++.+.... ..
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~------------------------------~~ 54 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTT------------------------------DV 54 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCS------------------------------EE
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccch------------------------------hh
Confidence 479999999999999999999999999999975432 11111100 00
Q ss_pred ccccCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCE
Q 018550 78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157 (354)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~ 157 (354)
..+.+++. .....++...+++.+.+++++ +.. .+|.+++..+ +.+.+.+... .+.+|.
T Consensus 55 ~~~~~~~~-------------~~~~~el~~~~~~q~~~~g~~--i~~-~~V~~~~~~~-~~~~v~~~~~-----~~~~~~ 112 (192)
T d1vdca1 55 ENFPGFPE-------------GILGVELTDKFRKQSERFGTT--IFT-ETVTKVDFSS-KPFKLFTDSK-----AILADA 112 (192)
T ss_dssp CCSTTCTT-------------CEEHHHHHHHHHHHHHHTTCE--EEC-CCCCEEECSS-SSEEEECSSE-----EEEEEE
T ss_pred hccccccc-------------cccchHHHHHHHHHHHhhcce--eee-eeEEeccccc-CcEEecccce-----eeeeee
Confidence 00111111 112378888888889999988 665 4688888766 6677766543 789999
Q ss_pred EEEeeCC
Q 018550 158 VVVCNGH 164 (354)
Q Consensus 158 vIlAtG~ 164 (354)
+++|+|.
T Consensus 113 ~~~a~g~ 119 (192)
T d1vdca1 113 VILAIGA 119 (192)
T ss_dssp EEECCCE
T ss_pred EEEEeee
Confidence 9999995
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=99.08 E-value=3.5e-10 Score=97.78 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee-cCCceEEEEeCEEEEeeCCC
Q 018550 103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHF 165 (354)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~-g~~~~~~~~~d~vIlAtG~~ 165 (354)
..+...+.+.+.+.+++ ++.+++++++..+++....+...+ .+++...+.++.||+|||.+
T Consensus 158 ~~i~~~l~~~~~~~gv~--i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~ 219 (336)
T d2bs2a2 158 HTMLFAVANECLKLGVS--IQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY 219 (336)
T ss_dssp HHHHHHHHHHHHHHTCE--EECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred HHHHHHHHHHHHhcccc--ccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEecccc
Confidence 56777788888888999 999999999988773344444444 33456788999999999954
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.07 E-value=8.3e-12 Score=102.23 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=37.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeec
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~ 43 (354)
.+|+||||||||++||..|+++ |++|+|||+.+.+||.+.+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~ 44 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF 44 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence 5899999999999999999876 6799999999999998876
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=3.5e-10 Score=98.63 Aligned_cols=39 Identities=36% Similarity=0.584 Sum_probs=37.0
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
||+|||||++|+++|+.|+++|++|+|+|+++.+||.+.
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~ 39 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTY 39 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCC
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceee
Confidence 799999999999999999999999999999999998664
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=99.06 E-value=3e-10 Score=95.49 Aligned_cols=139 Identities=17% Similarity=0.067 Sum_probs=79.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-cCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~-~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
.+||+||||||+|+++|..|++ .|++|+|+|+++.+||.|... ++.+.+..........+...
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~--------g~~~~~~~~~~~~~~~~~~~-------- 96 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG--------GQLFSAMIVRKPAHLFLDEI-------- 96 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCC--------STTCCCEEEETTTHHHHHHH--------
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeec--------CEEcCHHHHhhhHHHHHHHc--------
Confidence 4689999999999999999987 599999999999999988763 22222111111111000000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcE-EEEEee----------cCCc
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRK----------KDDV 149 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-~v~~~~----------g~~~ 149 (354)
+.++... ............+..++...+...+.. +..++.+..+...+ +.. .+.... ....
T Consensus 97 -g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~v~gv~~~~~~~~~~~~~~~~~~ 168 (278)
T d1rp0a1 97 -GVAYDEQ----DTYVVVKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQSCMD 168 (278)
T ss_dssp -TCCCEEC----SSEEEESCHHHHHHHHHHHHHTSTTEE--EEETEEEEEEEEET-TEEEEEEEEEHHHHTCTTTSSCCC
T ss_pred -CCceecC----CccceecccHHHHHHHHHHHHHhCCCE--EEeCCcceeeeecC-CeEEEEEeccceeeeeeccccccc
Confidence 1111110 000011122345556666555555555 77888888877765 322 121110 0011
Q ss_pred eEEEEeCEEEEeeCC
Q 018550 150 VEEETFDAVVVCNGH 164 (354)
Q Consensus 150 ~~~~~~d~vIlAtG~ 164 (354)
...+.++.+|.|+|.
T Consensus 169 ~~~~~a~~vv~a~G~ 183 (278)
T d1rp0a1 169 PNVMEAKIVVSSCGH 183 (278)
T ss_dssp CEEEEEEEEEECCCS
T ss_pred ceeeccceEEECcCC
Confidence 257899999999995
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.04 E-value=1.8e-10 Score=91.82 Aligned_cols=114 Identities=23% Similarity=0.305 Sum_probs=71.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+||+|||||++|+.+|..|++.+ .+|+++|+++.+. +.. ..+.......
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~--~~~-----------------------~~~~~~l~~~---- 51 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS--FLS-----------------------AGMQLYLEGK---- 51 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS--BCG-----------------------GGHHHHHTTS----
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc--ccc-----------------------cCcchhhccc----
Confidence 57999999999999999999974 5899999876431 000 0000000000
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEE
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIl 160 (354)
. .....+..+..+..++.+++ ++++++|.+++.++ +..++... .++.++.+.+|.+|+
T Consensus 52 --~----------------~~~~~~~~~~~~~l~~~gi~--v~~~~~V~~i~~~~-~~v~~~~~-~~g~~~~~~~D~li~ 109 (198)
T d1nhpa1 52 --V----------------KDVNSVRYMTGEKMESRGVN--VFSNTEITAIQPKE-HQVTVKDL-VSGEERVENYDKLII 109 (198)
T ss_dssp --S----------------CCGGGSBSCCHHHHHHTTCE--EEETEEEEEEETTT-TEEEEEET-TTCCEEEEECSEEEE
T ss_pred --c----------------cchHHHHHhhHHHHHHCCcE--EEEeeceeeEeecc-ccceeeec-ccccccccccceeeE
Confidence 0 00012222234455667888 99999999998754 44333322 223456889999999
Q ss_pred eeCCCCCcc
Q 018550 161 CNGHFSVPR 169 (354)
Q Consensus 161 AtG~~s~~~ 169 (354)
|+| +.+.
T Consensus 110 a~G--~~~~ 116 (198)
T d1nhpa1 110 SPG--AVPF 116 (198)
T ss_dssp CCC--EEEC
T ss_pred eec--ceee
Confidence 999 4443
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=4.4e-11 Score=94.75 Aligned_cols=119 Identities=10% Similarity=0.138 Sum_probs=76.6
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCcc------ccc--------------------cCCCCCCeEEecce
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE------THE--------------------KQPGYDNMWLHSMV 250 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~------~~~--------------------~l~~~~~~~~~~~v 250 (354)
.+.|+|||||++|++.|..+++.|.+|+++.+.+... ... .+...+.......|
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 84 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHI 84 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEeccee
Confidence 4679999999999999999999999999998765300 000 01112222334456
Q ss_pred eEEecCCc--EEEccCcEEecCEEEEcccCCC--ccCcccccCchh-------------------hhhceeeeecccchh
Q 018550 251 ERANEDGT--VVFRNGRVVSADVIMHCTGLTG--TSTTTLFLKPMA-------------------LLLWMTIVLGHCTST 307 (354)
Q Consensus 251 ~~v~~~~~--v~~~~g~~~~~D~vi~a~G~~~--~~p~~~~l~~~~-------------------~~~~~i~a~GD~~~~ 307 (354)
+.+..... ........+.++.+++++|..+ ..|+..++.... ....+||++|||...
T Consensus 85 ~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~~~~~~~~~~T~v~gV~aaGDv~~~ 164 (190)
T d1trba1 85 NKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDH 164 (190)
T ss_dssp EEEECSSSSEEEEESSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCS
T ss_pred EEEecCCCcEEEEEeeeeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEecCCcccccccccCeEEEeEEecCc
Confidence 66654332 3333456889999999999763 235555543211 112459999999986
Q ss_pred hHHHHHHH
Q 018550 308 FFRQSWHQ 315 (354)
Q Consensus 308 ~~~~~~~~ 315 (354)
.++|+..+
T Consensus 165 ~~~q~i~A 172 (190)
T d1trba1 165 IYRQAITS 172 (190)
T ss_dssp SSCCHHHH
T ss_pred ceeEEEEE
Confidence 66665543
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.02 E-value=2.9e-11 Score=93.69 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=63.5
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccccCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY 83 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
+|+|||||++|+.+|..|++ +.+|+++++.+.+...-. .+...+....
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~---------------------~~~~~~~~~~---------- 49 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKP---------------------MLSHYIAGFI---------- 49 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCST---------------------THHHHHTTSS----------
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccccc---------------------chhhhhhhhh----------
Confidence 79999999999999999965 779999998653210000 0000000000
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeC
Q 018550 84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG 163 (354)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG 163 (354)
....+..+..+...+.+++ ++++++++.++.. .. +...++. ++.||.+|+|+|
T Consensus 50 -----------------~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~---~~-~~~~~~~----~i~~D~li~a~G 102 (167)
T d1xhca1 50 -----------------PRNRLFPYSLDWYRKRGIE--IRLAEEAKLIDRG---RK-VVITEKG----EVPYDTLVLATG 102 (167)
T ss_dssp -----------------CGGGGCSSCHHHHHHHTEE--EECSCCEEEEETT---TT-EEEESSC----EEECSEEEECCC
T ss_pred -----------------hhhhhhHHHHHHHHhccce--eeeeccccccccc---cc-ccccccc----ccccceeEEEEE
Confidence 0022223334455666777 8888999888642 22 3344443 799999999999
Q ss_pred C
Q 018550 164 H 164 (354)
Q Consensus 164 ~ 164 (354)
.
T Consensus 103 ~ 103 (167)
T d1xhca1 103 A 103 (167)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=5e-11 Score=96.79 Aligned_cols=54 Identities=24% Similarity=0.397 Sum_probs=45.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (354)
.|||+||||||+|+++|..+++.|.+|+|+|++ .+||.|.+. +|.|.+.+.+..
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~-~~GG~c~n~--------g~~~~k~l~~~a 56 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNV--------GCVPKKVMWNTA 56 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CCCCccccc--------hhhhhhhhhhHH
Confidence 489999999999999999999999999999984 789998874 666666555443
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.00 E-value=4.7e-10 Score=93.34 Aligned_cols=33 Identities=24% Similarity=0.087 Sum_probs=30.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.++|||+|+.|+++|..+++.|.+|+++.+.+
T Consensus 43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~ 75 (261)
T d1mo9a1 43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP 75 (261)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 459999999999999999999999999999865
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.1e-11 Score=98.38 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=39.2
Q ss_pred HHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeCCCCCcccCCCCC
Q 018550 114 REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPG 175 (354)
Q Consensus 114 ~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG~~s~~~~p~~~g 175 (354)
++.+++ ++++++|++|+.++ .+|++.+|+ ++.||.||+|+| +.+..+++++
T Consensus 94 ~~~gI~--~~~g~~V~~id~~~---~~V~l~dG~----~i~~d~lViAtG--~~~~~~~l~~ 144 (213)
T d1m6ia1 94 ENGGVA--VLTGKKVVQLDVRD---NMVKLNDGS----QITYEKCLIATG--GTEPNVELAK 144 (213)
T ss_dssp TTCEEE--EEETCCEEEEEGGG---TEEEETTSC----EEEEEEEEECCC--EEEECCTTHH
T ss_pred HHCCeE--EEeCCEEEEeeccC---ceeeeccce----eeccceEEEeee--eecchhhhhh
Confidence 445677 89999999997644 367788876 899999999999 6666655443
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=8.4e-10 Score=94.20 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=33.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccce
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGS 40 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~ 40 (354)
.||+|||+|+||+++|.++++. |.+|+|+||....++.
T Consensus 6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~ 45 (311)
T d1kf6a2 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH 45 (311)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCc
Confidence 6999999999999999999987 6799999997655444
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.94 E-value=3e-10 Score=89.23 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
|+.+|+|||||++|+.+|..|++.|.++.+++..+.
T Consensus 2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~ 37 (183)
T d1d7ya1 2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE 37 (183)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence 788999999999999999999999987777665443
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.93 E-value=1.7e-10 Score=91.42 Aligned_cols=117 Identities=14% Similarity=0.166 Sum_probs=75.8
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc-----------ccccc--------------------CCCCCCeE
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-----------ETHEK--------------------QPGYDNMW 245 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~-----------~~~~~--------------------l~~~~~~~ 245 (354)
.++|+|||||++|+++|..+++.|.++.++.+.... ..... +++.+.-.
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i 84 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 84 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence 468999999999999999999999999999865420 00000 01122122
Q ss_pred EecceeEEecCCc--EEEccCcEEecCEEEEcccCC--CccCcccccCchhh----------------hhceeeeecccc
Q 018550 246 LHSMVERANEDGT--VVFRNGRVVSADVIMHCTGLT--GTSTTTLFLKPMAL----------------LLWMTIVLGHCT 305 (354)
Q Consensus 246 ~~~~v~~v~~~~~--v~~~~g~~~~~D~vi~a~G~~--~~~p~~~~l~~~~~----------------~~~~i~a~GD~~ 305 (354)
....|..+...+. ....+..+..+|.+++++|.. ...|++.++.+... ...+|||+|||.
T Consensus 85 ~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~~Ts~~GV~a~GDv~ 164 (192)
T d1vdca1 85 FTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQ 164 (192)
T ss_dssp ECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGG
T ss_pred eeeeEEecccccCcEEecccceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCceEecCCCEEEeeecC
Confidence 3345666664433 333445678899999999964 22377777643221 124499999999
Q ss_pred hhhHHHHH
Q 018550 306 STFFRQSW 313 (354)
Q Consensus 306 ~~~~~~~~ 313 (354)
...++|..
T Consensus 165 ~~~~r~~v 172 (192)
T d1vdca1 165 DKKYRQAI 172 (192)
T ss_dssp CSSCCCHH
T ss_pred CcccceEE
Confidence 87655543
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.91 E-value=3.4e-10 Score=92.06 Aligned_cols=36 Identities=31% Similarity=0.310 Sum_probs=33.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
++|||+||||||||++||..|++.|.+|+|||+...
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~ 37 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG 37 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 479999999999999999999999999999998643
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=4.4e-09 Score=90.47 Aligned_cols=162 Identities=14% Similarity=0.042 Sum_probs=87.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCC----CCCCCC----------Ccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL----GVDPNR----------YPVHSSLYK 67 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~----~~~~~~----------~~~~~~~~~ 67 (354)
.+||+|||+|+||+++|.+++++|.+|+|+||.+..++......+..+-.. ...++. .+.+.....
T Consensus 7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s~~A~GGi~a~~~~~~~Ds~e~~~~Dtl~aG~~l~d~~~v~ 86 (330)
T d1neka2 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (330)
T ss_dssp EESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHHTSCSCHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcHHHHhhhHheEcCCCCCCCHHHHHHHHHHhhhhccCHHHHH
Confidence 368999999999999999999999999999998766544332211110000 011110 001111111
Q ss_pred cchhcccccccccc--CCCCCccCCCCC------CCC-------------CCCCCHHHHHHHHHHHHHHhCCcceEEece
Q 018550 68 SLRVNLPRELMGFQ--AYPFVARNYEGS------VDL-------------RRYPGHEEVLRYLQNFAREFGVDQVVRLHT 126 (354)
Q Consensus 68 ~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~ 126 (354)
.+....+..+..+. +.++........ ... ..-.....+...+.+.+.+.++. +..+.
T Consensus 87 ~l~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~d~~G~~i~~~L~~~~~~~~v~--~~~~~ 164 (330)
T d1neka2 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTT--IFSEW 164 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCBCSCBTTBCCCSSBCEEECTTSSSEEEECCTTCHHHHHHHHHHHHHHHTTCE--EECSE
T ss_pred HHHHHhHHHHHHHhhccccccccCCCceehhccCcccccccCcccccccccCCccHHHHHHHHHHHHHhcCCe--EEEEE
Confidence 12121121111111 122211100000 000 00012356778888888888888 78888
Q ss_pred EEEEEEEeCCCcE-E-EEEeecCCceEEEEeCEEEEeeCCC
Q 018550 127 EVLNARLVESNKW-K-VKSRKKDDVVEEETFDAVVVCNGHF 165 (354)
Q Consensus 127 ~v~~i~~~~~~~~-~-v~~~~g~~~~~~~~~d~vIlAtG~~ 165 (354)
.+..+...+++.. . +.....+++...+.++.||+|||..
T Consensus 165 ~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~ 205 (330)
T d1neka2 165 YALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA 205 (330)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCC
T ss_pred EEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCc
Confidence 8888877553332 2 2233334456788999999999953
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.83 E-value=3e-10 Score=93.36 Aligned_cols=59 Identities=27% Similarity=0.453 Sum_probs=47.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCC--------ccceeecCCCCCCCCCCCCCCCCccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQ--------VGGSWIYTSETESDPLGVDPNRYPVHSSLYKS 68 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~--------~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (354)
+|||+|||+||||++||..+++.|. +|.|+|+... +||+|.+ .+|.|.+.++....+..
T Consensus 3 ~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~--------~gcip~K~l~~~a~~~~ 70 (240)
T d1feca1 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN--------VGCVPKKLMVTGANYMD 70 (240)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHH--------HSHHHHHHHHHHHHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCccccccccccccc--------ccchhhhhccccccccc
Confidence 6899999999999999999999986 6999998653 5777776 38888877766554433
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.82 E-value=1.6e-09 Score=84.69 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=31.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC--CcEEEEeeCCCc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQV 37 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g--~~v~lie~~~~~ 37 (354)
.|+|||||||++|+.+|..|++++ .+|+++|+++.+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~ 39 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY 39 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence 479999999999999999999987 489999987643
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=1.5e-09 Score=89.95 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=38.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
.+||+|||||++|+++|..|+++|++|+|+|+++.+||.+.
T Consensus 5 ~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~ 45 (297)
T d2bcgg1 5 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAA 45 (297)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceE
Confidence 47899999999999999999999999999999999998764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.80 E-value=1.4e-09 Score=93.05 Aligned_cols=42 Identities=38% Similarity=0.555 Sum_probs=38.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.|+|+|||||+||++||+.|+++|++|+|||+++.+||.+..
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 42 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRS 42 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEE
Confidence 378999999999999999999999999999999999997653
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=1.5e-09 Score=91.98 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=39.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
++||+|||||++|+++|+.|++.|++|+|||+++.+||.+..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t 42 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEE
Confidence 579999999999999999999999999999999999998754
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.75 E-value=3.3e-09 Score=90.42 Aligned_cols=42 Identities=29% Similarity=0.652 Sum_probs=39.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
+|+|+|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t 43 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD 43 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeE
Confidence 689999999999999999999999999999999999998743
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.74 E-value=8.9e-09 Score=83.06 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=30.0
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++|||+|++|+.+|..+++.|.+|+++.+.+
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 49999999999999999999999999999865
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.74 E-value=1.1e-09 Score=89.27 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=40.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~ 44 (354)
.|||+||||||||++||..|+++|.+|+|||+.+.+||.|...
T Consensus 6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~ 48 (229)
T d1ojta1 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNV 48 (229)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHH
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeecc
Confidence 4799999999999999999999999999999988899988763
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=2.5e-09 Score=87.15 Aligned_cols=43 Identities=28% Similarity=0.470 Sum_probs=40.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~ 44 (354)
+|||+||||||||++||..|++.|.+|+|||+.+.+||.|.+.
T Consensus 5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~ 47 (233)
T d1v59a1 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNV 47 (233)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEe
Confidence 5899999999999999999999999999999988999999874
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=3.8e-09 Score=91.90 Aligned_cols=41 Identities=32% Similarity=0.524 Sum_probs=38.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
+.||+|||||++|++||+.|+++|++|+|+|+++.+||.+.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~ 45 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA 45 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEE
Confidence 46899999999999999999999999999999999998654
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.72 E-value=8.3e-09 Score=83.27 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=30.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..++|||+|+.|+++|..+++.|.+|+++.+..
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~ 38 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA 38 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 459999999999999999999999999998764
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.69 E-value=4.8e-09 Score=87.81 Aligned_cols=39 Identities=28% Similarity=0.582 Sum_probs=36.4
Q ss_pred eEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCCCccceee
Q 018550 4 HVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWI 42 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~~~gg~~~ 42 (354)
||+|||||++|+++|..|+++|+ +|+|||+++.+||.+.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~ 41 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH 41 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSC
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEE
Confidence 79999999999999999999997 6999999999998764
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.66 E-value=1e-08 Score=77.11 Aligned_cols=85 Identities=18% Similarity=0.159 Sum_probs=54.9
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccC-CEEEEEEecCCccc------cccC-CCCCCeEEecceeEEec-CCc---EEE
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSVADET------HEKQ-PGYDNMWLHSMVERANE-DGT---VVF 261 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~~~~~------~~~l-~~~~~~~~~~~v~~v~~-~~~---v~~ 261 (354)
...+++|+|||||.+|+|+|..+.+.| ++|++++|++..+. ...+ .....++....++++.. ++. +..
T Consensus 42 p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~~~~~~a~~~~~~~~~~~~~~ei~~~~~~~~~v~~ 121 (153)
T d1gtea3 42 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQF 121 (153)
T ss_dssp CCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEE
T ss_pred ccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccchhheeecccccceeEeccccEEEEecCCceEEEEE
Confidence 345688999999999999999999997 56999998774211 1111 22335555555555442 221 111
Q ss_pred -------------ccC--cEEecCEEEEcccC
Q 018550 262 -------------RNG--RVVSADVIMHCTGL 278 (354)
Q Consensus 262 -------------~~g--~~~~~D~vi~a~G~ 278 (354)
.+| .+++||+||+|.|.
T Consensus 122 ~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 122 VRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153 (153)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred EEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence 112 46899999999983
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.65 E-value=7.1e-08 Score=83.56 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=33.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHH----cCCcEEEEeeCCCccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGG 39 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~----~g~~v~lie~~~~~gg 39 (354)
..||+|||+|+||++||..|++ +|.+|+|+||.+..|+
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg 62 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence 4689999999999999999976 6899999999765543
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.61 E-value=2.4e-08 Score=78.01 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~ 37 (354)
..+|||||||++|+.+|..|+++|.++++++..+..
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~ 38 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT 38 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence 368999999999999999999999998888876543
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.61 E-value=6.1e-08 Score=84.60 Aligned_cols=38 Identities=32% Similarity=0.524 Sum_probs=34.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHH------cCCcEEEEeeCCCccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR------EGHTVVVYEKGEQVGG 39 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~------~g~~v~lie~~~~~gg 39 (354)
.+||+||||||||+++|+.|++ .|++|+||||+..+|.
T Consensus 32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~ 75 (380)
T d2gmha1 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGA 75 (380)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTT
T ss_pred cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCC
Confidence 4799999999999999999998 7999999999877753
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=1.3e-07 Score=79.98 Aligned_cols=41 Identities=39% Similarity=0.555 Sum_probs=33.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~ 43 (354)
.+||+|||+|+||+++|+.+++.| +|+|+||.+..||....
T Consensus 7 ~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s~~ 47 (305)
T d1chua2 7 SCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFY 47 (305)
T ss_dssp ECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC-----
T ss_pred cCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCchHH
Confidence 479999999999999999999888 99999998877665443
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.57 E-value=2.3e-07 Score=70.15 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=66.6
Q ss_pred CeEEEE--cCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhccccccccc
Q 018550 3 RHVAVI--GAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80 (354)
Q Consensus 3 ~~vvII--G~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
+.++|+ |||+.|+.+|..|+++|.+|+++++.+.++....
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~-------------------------------------- 81 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHF-------------------------------------- 81 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHH--------------------------------------
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccc--------------------------------------
Confidence 445555 9999999999999999999999999764422211
Q ss_pred cCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEee---------------
Q 018550 81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK--------------- 145 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~--------------- 145 (354)
......+.+.+.+.|++ +++++++.++.. +...+....
T Consensus 82 ----------------------~~~~~~~~~~l~~~GV~--i~~~~~v~~i~~---~~v~l~~~~~~~~~~v~~~~g~~~ 134 (156)
T d1djqa2 82 ----------------------TLEYPNMMRRLHELHVE--ELGDHFCSRIEP---GRMEIYNIWGDGSKRTYRGPGVSP 134 (156)
T ss_dssp ----------------------TTCHHHHHHHHHHTTCE--EEETEEEEEEET---TEEEEEETTCSCSCCCCCCTTSCS
T ss_pred ----------------------hhHHHHHHHHHhhccce--EEeccEEEEecC---cceEEEeeeccccceeeeeeEEEe
Confidence 12234556666778999 999999999974 333333211
Q ss_pred --cCCceEEEEeCEEEEeeC
Q 018550 146 --KDDVVEEETFDAVVVCNG 163 (354)
Q Consensus 146 --g~~~~~~~~~d~vIlAtG 163 (354)
...+...+++|.+|+|||
T Consensus 135 ~~~~~~~~~le~D~vilvtg 154 (156)
T d1djqa2 135 RDANTSHRWIEFDSLVLVTG 154 (156)
T ss_dssp SCCCCCCEEEECSEEEEESC
T ss_pred cccCCccCcEecceEEEEec
Confidence 011235678888888887
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=1.4e-08 Score=78.40 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=35.0
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
...+++|+|||+|++|+++|..|+++|.+|+++.+.+.
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 34679999999999999999999999999999999874
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.46 E-value=7.3e-08 Score=79.50 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=32.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
++||+|||||++|+++|+.|+++|.+|+|+||+..
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~ 40 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDLP 40 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 47899999999999999999999999999999753
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.44 E-value=8.7e-08 Score=77.79 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=27.2
Q ss_pred CeEEEEccCCCHHHHHHHHhccC---CEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFA---KEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g---~~v~~~~r~~ 230 (354)
.+|+|||+|+.|+.+|...++.+ .+|.++.+..
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~ 37 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG 37 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence 36999999999999998777654 5799998754
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=2.3e-07 Score=74.44 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=29.4
Q ss_pred EEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 200 VILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++|||+|+.|+++|..+++.|.+|.++.+..
T Consensus 6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~~ 36 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGARAAVVESHK 36 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 8999999999999999999999999998765
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=2.6e-07 Score=70.35 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecCCceEEEEeCEEEEeeC
Q 018550 106 LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG 163 (354)
Q Consensus 106 ~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~~~d~vIlAtG 163 (354)
........+..+++ +..++++..++. ++..+.. + +.++.++||.||+|+|
T Consensus 111 ~~~~~~~~~~~gv~--~~~~~~v~~i~~---~gv~~~~-~--g~e~~i~aD~Vv~A~G 160 (162)
T d1ps9a2 111 GWIHRTTLLSRGVK--MIPGVSYQKIDD---DGLHVVI-N--GETQVLAVDNVVICAG 160 (162)
T ss_dssp HHHHHHHHHHTTCE--EECSCEEEEEET---TEEEEEE-T--TEEEEECCSEEEECCC
T ss_pred hHHHHHHHhhCCeE--EEeeeEEEEEcC---CCCEEec-C--CeEEEEECCEEEECCC
Confidence 34556667778888 888999998863 4444433 2 2346799999999999
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=1e-07 Score=74.20 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=66.1
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccccc------------------------cCCCCC-CeEEecceeEE
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHE------------------------KQPGYD-NMWLHSMVERA 253 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~------------------------~l~~~~-~~~~~~~v~~v 253 (354)
.|+|||||++|+++|..+++.|.+|.++.++....... .++... +......+..+
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence 48999999999999999999999999999753211100 001111 22222333333
Q ss_pred ecCC---c---EEEccCcEEecCEEEEcccCCCccCcccccCchh---------------hhhceeeeecccchhhHHH
Q 018550 254 NEDG---T---VVFRNGRVVSADVIMHCTGLTGTSTTTLFLKPMA---------------LLLWMTIVLGHCTSTFFRQ 311 (354)
Q Consensus 254 ~~~~---~---v~~~~g~~~~~D~vi~a~G~~~~~p~~~~l~~~~---------------~~~~~i~a~GD~~~~~~~~ 311 (354)
.... . ....++.++.++.++.++|..+ ++..+..... ....+||++|||....+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~~~ 159 (184)
T d1fl2a1 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKL--PNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQ 159 (184)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE--ESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSCC
T ss_pred cccccccceeeeeeecceeeecccccccccccc--cccccccccccccccceeccCCceeeeCCCEEEEeeecCcccCC
Confidence 2211 1 3345557899999999999762 2222221110 1124599999999854433
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.39 E-value=2.5e-06 Score=63.71 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=29.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
.++|+|||||-+|+-+|..|.++|. +|+++.+.+
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 3689999999999999999999997 588988754
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.38 E-value=8e-08 Score=78.86 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=62.9
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-----------------------------------------------
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------------------------------------------- 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~----------------------------------------------- 231 (354)
.|+|||+|++|+-+|..|++.|.+|.++++.+.
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI 83 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence 489999999999999999999999999998652
Q ss_pred ------------------------------ccccccCCCCC-CeEEecceeEEe-cCCc---EEEccCcEEecCEEEEcc
Q 018550 232 ------------------------------DETHEKQPGYD-NMWLHSMVERAN-EDGT---VVFRNGRVVSADVIMHCT 276 (354)
Q Consensus 232 ------------------------------~~~~~~l~~~~-~~~~~~~v~~v~-~~~~---v~~~~g~~~~~D~vi~a~ 276 (354)
+.+++++++.+ +++.++.|+.+. .++. |++++++.+.+|.||+|+
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~At 163 (251)
T d2i0za1 84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAV 163 (251)
T ss_dssp HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECC
T ss_pred HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEcc
Confidence 00001112223 688899999987 3443 677889999999999999
Q ss_pred cCC
Q 018550 277 GLT 279 (354)
Q Consensus 277 G~~ 279 (354)
|-.
T Consensus 164 Gg~ 166 (251)
T d2i0za1 164 GGK 166 (251)
T ss_dssp CCS
T ss_pred CCc
Confidence 976
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.35 E-value=7.3e-08 Score=77.83 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=29.5
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++|||+|+.|+.+|..+++.|.+|.++.+..
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 38999999999999999999999999998754
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=2.9e-07 Score=73.65 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=29.8
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++|||+|+.|+.+|..+++.|.+|.++.+..
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~ 35 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE 35 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 38999999999999999999999999999865
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.32 E-value=2.4e-08 Score=81.32 Aligned_cols=58 Identities=26% Similarity=0.405 Sum_probs=45.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC--------CCccceeecCCCCCCCCCCCCCCCCccccccc
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG--------EQVGGSWIYTSETESDPLGVDPNRYPVHSSLY 66 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~--------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (354)
++|||+||||||||+++|..+++.|. +|+|+|+. +.+||.|.+. +|.|.+.+.....+
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~--------g~ip~k~l~~~a~~ 68 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNV--------GCVPKKLMVTGAQY 68 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHH--------SHHHHHHHHHHHHH
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCcccccccccccccc--------ccccchhhhhhHHH
Confidence 36999999999999999999999886 68888874 3467887763 78877766655443
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=6.8e-06 Score=59.12 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=72.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|-+++..|..|++..-+|+++-|.+.+ +.
T Consensus 27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~----~~-------------------------------------- 64 (126)
T d1trba2 27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF----RA-------------------------------------- 64 (126)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC----CC--------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc----cc--------------------------------------
Confidence 479999999999999999999999999999886532 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCcEEEEEeecC--CceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--DVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g~--~~~~~~~~d~vI 159 (354)
...+.+.+++.....++. +.+++++.++.-++..--.++..+.. ++.+++++|.|+
T Consensus 65 --------------------~~~~~~~~~~~~~~~~i~--~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvF 122 (126)
T d1trba2 65 --------------------EKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF 122 (126)
T ss_dssp --------------------CHHHHHHHHHHHHTSSEE--EECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEE
T ss_pred --------------------hhHHHHHHHHhhccccee--EecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEE
Confidence 045556666666555666 88899999999865223346666532 223679999999
Q ss_pred EeeC
Q 018550 160 VCNG 163 (354)
Q Consensus 160 lAtG 163 (354)
++.|
T Consensus 123 v~iG 126 (126)
T d1trba2 123 VAIG 126 (126)
T ss_dssp ECSC
T ss_pred EEeC
Confidence 9987
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.30 E-value=2.2e-07 Score=75.34 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=29.5
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++|||+|+.|+.+|..+++.|.+|.++.+.+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~ 36 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999998644
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.29 E-value=1.8e-07 Score=79.37 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=38.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--CCcEEEEeeCCCccceeec
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--g~~v~lie~~~~~gg~~~~ 43 (354)
.+||+||||||+|+++|..|+++ |++|+++|+++.+||.+..
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 93 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence 36899999999999999999975 8999999999999987765
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.27 E-value=3.7e-06 Score=60.56 Aligned_cols=94 Identities=21% Similarity=0.250 Sum_probs=68.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|-+++..|..|++..-+|+++-+.+.+ ..
T Consensus 30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~----~~-------------------------------------- 67 (126)
T d1fl2a2 30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM----KA-------------------------------------- 67 (126)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC----CS--------------------------------------
T ss_pred CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccc----cc--------------------------------------
Confidence 478999999999999999999998899999886533 00
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCcceEEeceEEEEEEEeCCCcEEEEEeec-CCceEEEEeCEEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV 159 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~v~~i~~~~~~~~~v~~~~g-~~~~~~~~~d~vI 159 (354)
. +.+.+.+.. -+++ +.+++++.++.-+++.--.+...+. +++++++++|.|+
T Consensus 68 ---------------------~---~~~~~~~~~~~~I~--v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvF 121 (126)
T d1fl2a2 68 ---------------------D---QVLQDKLRSLKNVD--IILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIF 121 (126)
T ss_dssp ---------------------C---HHHHHHHHTCTTEE--EESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEE
T ss_pred ---------------------c---ccccccccccccee--EEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEE
Confidence 0 122233333 2455 8999999999876523344666653 3456789999999
Q ss_pred EeeC
Q 018550 160 VCNG 163 (354)
Q Consensus 160 lAtG 163 (354)
++.|
T Consensus 122 v~IG 125 (126)
T d1fl2a2 122 VQIG 125 (126)
T ss_dssp ECSC
T ss_pred EEeC
Confidence 9988
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.18 E-value=3.7e-07 Score=74.94 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=30.7
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..|+|||+|++|+-+|..|++.|.+|.++++.+
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~ 37 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 359999999999999999999999999999875
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.17 E-value=7.8e-07 Score=71.77 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=29.9
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++|||+|+.|+.+|..+++.|.+|+++.+.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999765
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.17 E-value=1e-06 Score=72.52 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=64.0
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC-------------------------cccc---------------
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-------------------------DETH--------------- 235 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~-------------------------~~~~--------------- 235 (354)
..++|+|||+|++|+-+|..|++.|.+|+++++++. .+..
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG 82 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence 347899999999999999999999999999998642 0000
Q ss_pred -------------------cc---CCCCCCeEEecceeEEecCCc---EEEccCcEEecCEEEEcccCC
Q 018550 236 -------------------EK---QPGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 236 -------------------~~---l~~~~~~~~~~~v~~v~~~~~---v~~~~g~~~~~D~vi~a~G~~ 279 (354)
.. ......+..++.+..+..++. ++++||+++.+|++|.|.|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~ 151 (265)
T d2voua1 83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGA 151 (265)
T ss_dssp CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTT
T ss_pred ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccccc
Confidence 00 011235677888888875543 777899999999999999976
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.17 E-value=7.8e-07 Score=74.67 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=63.3
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC---------------------------------ccc---------
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---------------------------------DET--------- 234 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~---------------------------------~~~--------- 234 (354)
.-.|+|||+|++|+-+|..|.+.|.+++++.+.+. ...
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e 86 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE 86 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccch
Confidence 35699999999999999999999999999998653 000
Q ss_pred ----cccC-CCCC---CeEEecceeEEe--cC-Cc--EEEccCcEEecCEEEEcccCC
Q 018550 235 ----HEKQ-PGYD---NMWLHSMVERAN--ED-GT--VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 235 ----~~~l-~~~~---~~~~~~~v~~v~--~~-~~--v~~~~g~~~~~D~vi~a~G~~ 279 (354)
++.+ ++.+ .+.+++.|++++ ++ +. |.+.++.++.+|.+|.|||+-
T Consensus 87 ~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l 144 (298)
T d1w4xa1 87 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL 144 (298)
T ss_dssp HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence 0000 1112 588999999997 22 22 888888999999999999974
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=98.16 E-value=6.7e-07 Score=77.69 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=33.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
+++||||||+|++|+.+|..|++.|++|+|+|++..
T Consensus 3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~ 38 (379)
T d2f5va1 3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI 38 (379)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence 358999999999999999999999999999999644
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=98.13 E-value=7.5e-07 Score=76.77 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=31.7
Q ss_pred CeEEEEcCChHHHHHHHHHH-----HcCCcEEEEeeCCCc
Q 018550 3 RHVAVIGAGAAGLVVGHELL-----REGHTVVVYEKGEQV 37 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~-----~~g~~v~lie~~~~~ 37 (354)
+||+||||||+|+++|..|+ +.|++|+||||.+.+
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence 79999999999999999996 579999999997654
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.10 E-value=1.3e-06 Score=74.71 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=29.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccC--CEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g--~~v~~~~r~~ 230 (354)
|+|+|||+|++|+-+|..|++.+ .+|+++++++
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 78999999999999999998776 5899999985
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.10 E-value=2.4e-07 Score=72.82 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=33.0
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCC-EEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~~r~~~ 231 (354)
.+++|+|||+|++|+++|..|++.|. .|+++.+++.
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 46899999999999999999999997 5999999875
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.03 E-value=1.9e-06 Score=68.40 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=57.9
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC--------------------c--------------cccccCCCC-CC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--------------------D--------------ETHEKQPGY-DN 243 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~--------------------~--------------~~~~~l~~~-~~ 243 (354)
.|+|||+|+.|+|.|...++.|.++.+++.+.. . +..+.++.. +.
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL 83 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL 83 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence 489999999999999999999999999986421 0 001111222 22
Q ss_pred eEEecceeEEe-cCCc---EEEccCcEEecCEEEEcccCC
Q 018550 244 MWLHSMVERAN-EDGT---VVFRNGRVVSADVIMHCTGLT 279 (354)
Q Consensus 244 ~~~~~~v~~v~-~~~~---v~~~~g~~~~~D~vi~a~G~~ 279 (354)
-+....|.++. ++++ |++.+|.++.+..||++||.-
T Consensus 84 ~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF 123 (230)
T d2cula1 84 HLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 123 (230)
T ss_dssp EEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred HHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence 34455666654 4443 778899999999999999985
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=97.95 E-value=1e-06 Score=74.19 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=29.8
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 59999999999999999999999999998853
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.95 E-value=3.5e-06 Score=69.14 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=29.4
Q ss_pred EEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 200 VILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++|||+|+.|+.+|..+++.|.+|.++.+..
T Consensus 4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~~ 34 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARHNAKVALVEKSR 34 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 8999999999999999999999999999764
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.93 E-value=1.8e-05 Score=62.80 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=31.3
Q ss_pred CCCCeEEEEccCCCHHHHHHHHh--------------------ccC-CEEEEEEecCC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLA--------------------GFA-KEVHIASRSVA 231 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~--------------------~~g-~~v~~~~r~~~ 231 (354)
..+++|+|||+|.+|+|+|..+. +.+ ++|+++.|+.+
T Consensus 37 ~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~ 94 (216)
T d1lqta1 37 LSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 94 (216)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred ccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence 46899999999999999998886 344 57999999875
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.93 E-value=6.8e-06 Score=67.81 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=29.0
Q ss_pred eEEEEccCCCHHHHHHHHhccC-CEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 230 (354)
+|+|||+|++|+-+|..|++.| ++|+++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 4999999999999999999999 4799999864
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=97.92 E-value=1.9e-06 Score=71.45 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=30.1
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|.+|+-+|.+|++.|.+|+++.+..
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 49999999999999999999999999999865
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.90 E-value=4.1e-06 Score=67.60 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=34.3
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
..+++|+|||+|++|+.+|..|++.|.+|+++.+++.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 4679999999999999999999999999999998775
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.89 E-value=4.7e-05 Score=54.73 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=65.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceeecCCCCCCCCCCCCCCCCcccccccccchhcccccccccc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ 81 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
.++|+|||+|-+++..|..|++.--+|+++-|++.+.+.
T Consensus 34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~----------------------------------------- 72 (130)
T d1vdca2 34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRAS----------------------------------------- 72 (130)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSC-----------------------------------------
T ss_pred CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccc-----------------------------------------
Confidence 479999999999999999999999999999887643100
Q ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeceEEEEEEEeCCCc--EEEEEee-cCCceEEEEeCEE
Q 018550 82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK--WKVKSRK-KDDVVEEETFDAV 158 (354)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~v~~i~~~~~~~--~~v~~~~-g~~~~~~~~~d~v 158 (354)
..+. .+..+.-+++ +.+++++.++.-++... -.+...+ .+++..++.+|.|
T Consensus 73 ---------------------~~~~---~~l~~~~nI~--v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGv 126 (130)
T d1vdca2 73 ---------------------KIMQ---QRALSNPKID--VIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGL 126 (130)
T ss_dssp ---------------------HHHH---HHHHTCTTEE--EECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEE
T ss_pred ---------------------hhhh---hccccCCceE--EEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEE
Confidence 1122 2222223455 89999999998765222 2355554 2344678999999
Q ss_pred EEee
Q 018550 159 VVCN 162 (354)
Q Consensus 159 IlAt 162 (354)
.+|.
T Consensus 127 FVaI 130 (130)
T d1vdca2 127 FFAI 130 (130)
T ss_dssp EECS
T ss_pred EEEC
Confidence 9873
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=97.87 E-value=3.1e-06 Score=71.20 Aligned_cols=32 Identities=13% Similarity=0.320 Sum_probs=29.0
Q ss_pred eEEEEccCCCHHHHHHHHhccC-CEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 230 (354)
+|+|||+|.+|+-+|..|+++| ++|+++.+++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 5999999999999999999999 5799998764
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.86 E-value=5.9e-06 Score=71.40 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=30.5
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+|||||+|++|+.+|..|++.|++|+|+|++.
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 35 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence 79999999999999999999999999999954
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.86 E-value=5.4e-06 Score=71.54 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=32.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+.||+||||+|++|+.+|..|++.|.+|+|+|++.
T Consensus 1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~ 35 (360)
T d1kdga1 1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 35 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence 46899999999999999999999999999999974
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.85 E-value=5.5e-06 Score=66.60 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=30.0
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|+.|+.+|..+++.|.+|.++.+.+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 48999999999999999999999999999765
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=1.1e-05 Score=64.58 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=32.2
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhcc--------------------C-CEEEEEEecCC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGF--------------------A-KEVHIASRSVA 231 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~--------------------g-~~v~~~~r~~~ 231 (354)
..+++|+|||+|.+|+|+|..+.+. + ++|+++.|+++
T Consensus 37 ~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~ 94 (225)
T d1cjca1 37 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 94 (225)
T ss_dssp TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred ccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence 4689999999999999999999872 3 67999999875
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.82 E-value=6.6e-06 Score=71.20 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
..||||||+|++|+.+|..|++.|++|+|+|++.
T Consensus 7 ~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 40 (370)
T d3coxa1 7 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR 40 (370)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3689999999999999999999999999999853
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=1.5e-05 Score=53.93 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=55.8
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeEEecceeEEecCCcEEEccCcEEecCEEE
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIM 273 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~l~~~~~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi 273 (354)
++++|+|+|+|.|.+|+-+|..|.+.|.+|+++..+..+...+.+.....+.... .. +...-.+|.|+
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~d~vi 69 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGS-------LN-----DEWLMAADLIV 69 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESB-------CC-----HHHHHHCSEEE
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecc-------cc-----hhhhccCCEEE
Confidence 4578999999999999999999999999999998876544444443322222111 00 11123589999
Q ss_pred EcccCCCccCcccccC
Q 018550 274 HCTGLTGTSTTTLFLK 289 (354)
Q Consensus 274 ~a~G~~~~~p~~~~l~ 289 (354)
++.|.. |+.++++
T Consensus 70 ~SPGi~---~~~~~~~ 82 (93)
T d2jfga1 70 ASPGIA---LAHPSLS 82 (93)
T ss_dssp ECTTSC---TTSHHHH
T ss_pred ECCCCC---CCCHHHH
Confidence 999998 5544443
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=97.73 E-value=7.1e-06 Score=68.02 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=29.8
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|.+|+-+|..|+++|.+|+++.+.+
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 38999999999999999999999999999864
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.71 E-value=2.9e-05 Score=62.65 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=27.6
Q ss_pred eEEEEccCCCHHHHHHHHhccC-CEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 230 (354)
.++|||+|+.|+.+|..+++.| ++|.++....
T Consensus 5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~ 37 (240)
T d1feca1 5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK 37 (240)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence 4899999999999999999987 5688887654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.70 E-value=3e-06 Score=68.70 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=26.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEee
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~ 33 (354)
++|+|||||++|+++|+.|+++|++|+++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~ 31 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD 31 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence 4799999999999999999999986555554
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.63 E-value=1.7e-05 Score=69.11 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=32.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~~ 36 (354)
.+|+||||||.+|+.+|..|++.+ ++|+|+|++..
T Consensus 24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~ 59 (391)
T d1gpea1 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (391)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence 489999999999999999999988 79999999753
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.60 E-value=1.7e-05 Score=68.95 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=31.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~ 35 (354)
.+|+||||+|.+|+.+|..|++.+ ++|+|+|+++
T Consensus 17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~ 51 (385)
T d1cf3a1 17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 51 (385)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 479999999999999999999976 8999999975
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=4e-05 Score=51.71 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|+|.|.+|+++|..|.++|.+|+++|.+.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~ 38 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence 4789999999999999999999999999999864
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.53 E-value=2.8e-05 Score=64.69 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=30.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 369999999999999999999999999999876
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.51 E-value=1.7e-05 Score=67.94 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=30.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+|+||||+|+||+.+|..|++. ++|+|+|+++
T Consensus 27 YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~ 58 (351)
T d1ju2a1 27 YDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS 58 (351)
T ss_dssp EEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred ccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence 7999999999999999999986 9999999975
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.45 E-value=7.9e-05 Score=61.27 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=31.0
Q ss_pred CeEEEEccCCCHHHHHHHHhccC-CEEEEEEecCC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFA-KEVHIASRSVA 231 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~~ 231 (354)
-+|+|||+|++|+-+|..|++.| .+|+++++++.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 57999999999999999999999 58999999773
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.44 E-value=4.9e-05 Score=58.15 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=32.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|+|+|||+|..|..+|..|.++|++|+++||+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 5899999999999999999999999999999864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.42 E-value=6.9e-05 Score=57.58 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=31.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|..|.++|..|+++|++|.++++.+
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4789999999999999999999999999999854
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=5.4e-05 Score=64.63 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=29.1
Q ss_pred EEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 200 VILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 8999999999999999999999999998754
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.31 E-value=6.3e-05 Score=63.01 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=30.1
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|.+|+-+|..|++.|.+|.++++.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 49999999999999999999999999999865
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.00017 Score=54.28 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=31.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
+||+|||+|..|...|..|++.|++|++++|.+.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 5899999999999999999999999999998754
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.21 E-value=0.00015 Score=52.38 Aligned_cols=34 Identities=21% Similarity=0.479 Sum_probs=31.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
++|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~ 34 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD 34 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence 5799999999999999999999999999998653
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.21 E-value=0.0002 Score=57.19 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=26.5
Q ss_pred eEEEEccCCCHHHHHHHHhccC-CEEEEEEec
Q 018550 199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRS 229 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~ 229 (354)
.++|||+|+.|+.+|..+++.+ ++|.++...
T Consensus 5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~ 36 (238)
T d1aoga1 5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ 36 (238)
T ss_dssp SEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence 3899999999999999999987 467787753
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=97.19 E-value=0.0001 Score=62.18 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=30.0
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|.+|+-+|..|++.|.+|.++++.+
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 49999999999999999999999999999865
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.16 E-value=2.8e-05 Score=62.52 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=31.4
Q ss_pred CCeEEEEccCCCHHHHHHHHhccC-------CEEEEEEecCC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFA-------KEVHIASRSVA 231 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g-------~~v~~~~r~~~ 231 (354)
+.+|+|||+|++|+.+|..|+++| .+|+++.+.+.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 578999999999999999999887 47999999874
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00024 Score=54.88 Aligned_cols=35 Identities=37% Similarity=0.626 Sum_probs=32.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|-++|+|||+|..|...|..++++|++|+++|+++
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 34899999999999999999999999999999864
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.96 E-value=0.00024 Score=59.27 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=32.0
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|+|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 5899999999999999999999999999999865
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.95 E-value=0.00047 Score=48.11 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=33.7
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCc
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD 232 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~ 232 (354)
++++|+|||+|.+|..-|..|.+.|.+|+++.....+
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~ 47 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIP 47 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCh
Confidence 6799999999999999999999999999999876643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.94 E-value=0.00036 Score=50.36 Aligned_cols=33 Identities=39% Similarity=0.548 Sum_probs=31.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|||+|..|..+|..|.+.|++|+++|+++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence 579999999999999999999999999999864
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.88 E-value=0.00066 Score=50.26 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
..+|+|||+|.+|+.++..+.+.|.+|+++|.+.
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 4689999999999999999999999999999853
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.83 E-value=0.00027 Score=59.57 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=32.8
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+++|+|||+|++|+-+|..|++.|.+|+++++++
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 67899999999999999999999999999999865
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.80 E-value=0.00081 Score=50.51 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=31.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.-+|+|||+|.+|+.++..+.+.|..|+++|.+.
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~ 62 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 62 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence 3589999999999999999999999999999864
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.80 E-value=0.00051 Score=50.66 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=33.1
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++++++|||||.+|.+-|..|.+.|.+|+++....
T Consensus 11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~ 46 (150)
T d1kyqa1 11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (150)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 367999999999999999999999999999998754
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.79 E-value=0.00048 Score=52.81 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=31.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|||+|..|...|..++.+|++|+++|+++
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 689999999999999999999999999999864
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=96.75 E-value=0.00036 Score=58.49 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-.|+|||+|.+|+-+|..+++.|.+|.++++.+
T Consensus 20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~ 52 (317)
T d1qo8a2 20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP 52 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 359999999999999999999999999998765
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.72 E-value=0.00057 Score=57.14 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=33.2
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.++|+|||+|.+|+-+|..|++.|.+|++++++++
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 48899999999999999999999999999999886
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.62 E-value=0.0008 Score=52.27 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=30.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||.|..|+.+|..|++.|++|+.+|.+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 579999999999999999999999999999864
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.62 E-value=0.00062 Score=54.90 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=31.6
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++|+|||+|.+|+-+|..|+++|.+|++++|..
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4789999999999999999999999999999864
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.60 E-value=0.0014 Score=45.59 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|..|..-|..|.+.|.+|++++...
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 4789999999999999999999999999998743
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.60 E-value=0.00053 Score=52.63 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=30.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|||+|.-|.++|..|++.|.+|+++.+++
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 579999999999999999999999999999864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.59 E-value=0.00017 Score=55.20 Aligned_cols=33 Identities=15% Similarity=0.036 Sum_probs=31.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++++|||+|.+|.-+|..|++.|.+|+++.|.+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 789999999999999999999999999999875
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.00093 Score=49.15 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=30.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||||..|+.-|..|.+.|.+|+|+.++
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999999999999999999999999999763
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.56 E-value=0.0012 Score=49.41 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=30.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||.|..|.+.|..|.+.|++|+++|+++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 479999999999999999999999999999863
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.50 E-value=0.0013 Score=48.42 Aligned_cols=34 Identities=15% Similarity=0.412 Sum_probs=31.4
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG-~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+||| .|..|...|..|.+.|++|.++|+..
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 47899999 69999999999999999999999854
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.50 E-value=0.0012 Score=50.18 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
++|+|||+|.-|.+.|..|++.|.+|.++.+.
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 58999999999999999999999999999763
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.44 E-value=0.0016 Score=47.50 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=30.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
++||+|||+|..|.++|..|+..+. ++.|+|.++
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 4689999999999999999999885 899999754
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.0011 Score=55.91 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=32.6
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+..+|+|||+|.+|+-+|..|++.|.+|+++++++.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r 39 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR 39 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 346799999999999999999999999999988764
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.17 E-value=0.013 Score=45.96 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHc--------------------CC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLRE--------------------GH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~--------------------g~-~v~lie~~~ 35 (354)
.++|+|||+|-.++=+|+.|.+. |. +|.++.|+.
T Consensus 39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg 93 (225)
T d1cjca1 39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 93 (225)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence 37899999999999999999983 65 799999864
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.17 E-value=0.003 Score=46.43 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=30.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
++||+|||+|..|..+|..|+..++ ++.|+|.++
T Consensus 7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~ 41 (154)
T d1pzga1 7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 41 (154)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence 4789999999999999999988886 899999764
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.13 E-value=0.0029 Score=46.03 Aligned_cols=34 Identities=32% Similarity=0.595 Sum_probs=30.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
.+||+|||+|..|.++|..|..++. ++.|+|..+
T Consensus 1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 36 (146)
T d1hyha1 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (146)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 3799999999999999999999885 899999753
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0016 Score=53.91 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=31.1
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.++|||+|++|+-+|..|++.|.+|+++++++.
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 589999999999999999999999999999875
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.0028 Score=40.29 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=31.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
.|+|.|||+|.=|.+.+.+..+.|+++.+++..+.
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 36899999999999999999999999999998643
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0055 Score=42.23 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=30.6
Q ss_pred CCeEEEEcCCh-----------HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGA-----------AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~-----------aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|| ++..++++|++.|++++++..++
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP 48 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP 48 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence 57899999994 79999999999999999998765
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.04 E-value=0.0041 Score=45.86 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
++||.|||+|..|.++|+.|...|+ ++.|+|..+
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~ 55 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE 55 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4699999999999999999999997 899999853
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.04 E-value=0.0031 Score=46.91 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|.|||.|..|...|+.|.++|++|.++|+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~ 34 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 34 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence 3579999999999999999999999999999863
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.03 E-value=0.0037 Score=45.23 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
.+||.|||+|..|.++|..|+..+. ++.++|..+
T Consensus 1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~ 35 (142)
T d1uxja1 1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 35 (142)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence 3689999999999999999998886 899999754
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.99 E-value=0.0015 Score=52.18 Aligned_cols=33 Identities=18% Similarity=0.046 Sum_probs=30.9
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.|+|||+|.+|+-+|..|++.|.+|+++++++.
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 389999999999999999999999999999874
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.93 E-value=0.0048 Score=46.42 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=32.6
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.|+|+|||+|.+|.-+|..|.+.|.+|+++.|...
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~ 36 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE 36 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence 48999999999999999999999999999999864
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.89 E-value=0.0044 Score=46.68 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+.+|.|||-|..|...|..|.+.|++|.++|+.+
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 4689999999999999999999999999999864
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.0059 Score=41.94 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=31.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
.+|.|||||.=|.++|..+.+.|+++.++|+++.
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 5799999999999999999999999999998653
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=95.88 E-value=0.005 Score=44.51 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=30.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
+.||+|||+|..|.++|..|...+. ++.|+|..+
T Consensus 1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 3689999999999999999999886 899999754
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0057 Score=42.73 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=30.6
Q ss_pred CCeEEEEcCCh-----------HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGA-----------AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~-----------aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|| ++..++.+|++.|++++++..++
T Consensus 7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP 51 (127)
T d1a9xa3 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP 51 (127)
T ss_dssp CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence 37899999996 69999999999999999998765
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.83 E-value=0.0023 Score=50.56 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=29.4
Q ss_pred eEEEEccCCCHHHHHHHHhcc--CCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGF--AKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~~ 231 (354)
+|+|||+|++|+.+|..|++. +.+|+++.+.+.
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 799999999999999999765 679999998764
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=95.82 E-value=0.0056 Score=44.27 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
+||+|||+|..|.++|..|+..+. ++.|+|..+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~ 35 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence 479999999999999999999985 899999765
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.80 E-value=0.0043 Score=47.50 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=30.1
Q ss_pred CeEEEE-cCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVI-GAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvII-G~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|| |+|-.|.++|..|++.|++|++..|++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 479999 679999999999999999999999864
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.76 E-value=0.0045 Score=45.90 Aligned_cols=33 Identities=30% Similarity=0.528 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||.|..|...|..|.+.|++|.++|+.+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~ 33 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 33 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 469999999999999999999999999999864
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.76 E-value=0.0061 Score=44.03 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
+.||+|||+|..|.++|..|...++ ++.|+|.++
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~ 36 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 36 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 3589999999999999999999987 899999753
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.74 E-value=0.0054 Score=44.70 Aligned_cols=33 Identities=33% Similarity=0.518 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
+||.|||+|..|.++|..|...++ ++.|+|..+
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence 589999999999999999999886 799999754
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.74 E-value=0.0056 Score=45.78 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=29.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
+++|.|||.|..|.+.|+.|.+.|+ +|..+|++.
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 3579999999999999999999986 688888853
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0047 Score=51.27 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=28.3
Q ss_pred CeEEEEccCCCHHHHHHHHhcc--CCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGF--AKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~ 230 (354)
-.|+|||+|..|+-+|..+++. +.+|.+++...
T Consensus 6 ~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~ 40 (311)
T d1kf6a2 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY 40 (311)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred cCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 3499999999999999999886 66899998754
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.68 E-value=0.0057 Score=46.14 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=30.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|-|||.|..|...|+.|.+.|++|.++|+.+
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 579999999999999999999999999999853
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.62 E-value=0.0031 Score=49.30 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=30.0
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++|||+|+.|+.+|..+++.|.+|.++.+..
T Consensus 5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 48999999999999999999999999998865
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.54 E-value=0.0052 Score=41.99 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=29.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|||+|.+|+-.|..|++...+++++.+.+
T Consensus 32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 4789999999999999999999888877776643
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.53 E-value=0.0095 Score=43.36 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=30.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
+.||.|||+|..|.++|..|...+. ++.|+|..+
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~ 37 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 37 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence 5689999999999999998888876 899999754
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.53 E-value=0.0069 Score=43.71 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=29.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
+||.|||+|..|.++|..|+..+. ++.|+|.++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence 589999999999999999998886 799999753
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.49 E-value=0.0073 Score=52.77 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=38.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCCccceee
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI 42 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~~gg~~~ 42 (354)
.+||+|+|.|..=+.+|..|++.|.+|+=+|+++..||.|.
T Consensus 6 e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~a 46 (491)
T d1vg0a1 6 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA 46 (491)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred ccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCccc
Confidence 58999999999999999999999999999999999998875
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.012 Score=43.03 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+-+|+|+|.|..|..++..|.+.|.+++++|.++
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~ 36 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 4569999999999999999999999999999864
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.36 E-value=0.0058 Score=46.91 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=28.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||.|+.|+.+|..++ .|++|+.+|-++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP 32 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence 57999999999999998776 599999999764
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.32 E-value=0.0095 Score=43.77 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
.||.|||+|..|.++|+.|...++ ++.|+|..+
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~ 54 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADT 54 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 479999999999999999999986 899999753
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.29 E-value=0.0086 Score=43.79 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||.|..|...|..|.++|++++++++.+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~ 33 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR 33 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence 479999999999999999999999999998754
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.18 E-value=0.0098 Score=43.01 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=29.4
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
+||.|||+ |..|.++|..|...+. ++.|+|..+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH 36 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence 47999996 9999999999999985 899999754
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.14 E-value=0.011 Score=42.50 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=29.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
+||.|||+|..|.++|..|...+. ++.|+|.++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 35 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence 489999999999999999998875 899999753
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.014 Score=43.45 Aligned_cols=34 Identities=26% Similarity=0.203 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|+|+|=++-+++..|.+.|.++.++.|..
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 4789999999999999999999999999998853
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.00 E-value=0.22 Score=38.21 Aligned_cols=34 Identities=32% Similarity=0.386 Sum_probs=28.6
Q ss_pred CCeEEEEcCChHHHHHHHHHH--------------------HcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELL--------------------REGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~--------------------~~g~-~v~lie~~~ 35 (354)
.++|+|||+|-.++=+|+.|. +.|. +|.++-|+.
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg 93 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG 93 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence 478999999999999999887 4566 699998753
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=94.96 E-value=0.0069 Score=49.24 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=31.1
Q ss_pred CCeEEEEccCCCHHHHHHHHhc-cCCEEEEEEecCC
Q 018550 197 DQVVILIGHYASGLDIKRDLAG-FAKEVHIASRSVA 231 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~-~g~~v~~~~r~~~ 231 (354)
...|+|||+|++|+.+|..|++ .|.+|+++.+++.
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 4569999999999999999987 5999999998763
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.015 Score=44.80 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=31.0
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|+|+|| |..|.+++..|.+.|++|+++.|++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~ 37 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence 478999995 9999999999999999999998853
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.85 E-value=0.013 Score=42.27 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=28.6
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 4 HVAVIGA-GAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 4 ~vvIIG~-G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
||+|||| |..|.++|..|...+. ++.|+|.++
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~ 36 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 36 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence 7999996 9999999999999986 799999753
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.70 E-value=0.02 Score=42.46 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.+|+|+|+|+.|+.++..+...|.+|+++++++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 579999999999999988888999999999864
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=94.65 E-value=0.016 Score=47.10 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=32.2
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.+++|+|+|| |..|..++..|.+.|++|+++.|..
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~ 37 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 37 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3689999998 9999999999999999999999864
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.0095 Score=45.47 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=31.9
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
++|.|||+|.+|..+|..++..|.+|+++.+++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 7899999999999999999999999999988764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.52 E-value=0.019 Score=42.63 Aligned_cols=33 Identities=36% Similarity=0.370 Sum_probs=30.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.+|+|+|+|+.|+.++..+...|.+|+++|+++
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 579999999999999999999999999999853
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.51 E-value=0.012 Score=43.47 Aligned_cols=33 Identities=21% Similarity=0.055 Sum_probs=31.0
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+|+|||+|.+|.-+|..|++.|.+|+++.|++.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 699999999999999999999999999999764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.46 E-value=0.02 Score=42.29 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.+|+|+|+|+.|+.++..+...|.+|+++++.+
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence 579999999999999998888999999999753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.44 E-value=0.021 Score=42.53 Aligned_cols=33 Identities=33% Similarity=0.351 Sum_probs=29.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
..|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~ 61 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 61 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence 579999999999999999999998 799999754
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=94.30 E-value=0.023 Score=41.36 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcC-CcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g-~~v~lie~~~ 35 (354)
++|.+||+|..|.+.+..|.+.| +++.++++++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 57999999999999999998887 8999999864
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=94.23 E-value=0.022 Score=46.57 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++++|+|+|| |..|..++..|.++|++|+++.|..
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 37 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE 37 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence 3678999997 9999999999999999999998854
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.15 E-value=0.021 Score=41.64 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|.|||+|-.|.+.+..|.+.++++++.++..
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~ 33 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL 33 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence 479999999999999999999999999998753
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=94.04 E-value=0.028 Score=41.64 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=30.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
.++|+|||+|=++-+++..|.+.|. ++.|+.|+.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence 3689999999999999999999997 799998853
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=94.00 E-value=0.033 Score=40.85 Aligned_cols=33 Identities=33% Similarity=0.513 Sum_probs=30.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
.++|+|||+|-+|..++..|.+.|. +++++.|.
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt 57 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 57 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 4789999999999999999999998 58888875
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.031 Score=46.67 Aligned_cols=34 Identities=35% Similarity=0.332 Sum_probs=31.6
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 1 ~~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
|.++|+|.|| |..|..++..|.+.|++|+.+|+-
T Consensus 1 M~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~ 35 (346)
T d1ek6a_ 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF 35 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence 7899999997 999999999999999999999863
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=93.80 E-value=0.0096 Score=45.19 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=31.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
++|.|||+|.+|..+|..++..|.+|+++.+++.
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 6799999999999999999999999999998764
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.031 Score=40.81 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|.++|||-|..|-.+|..|+..|.+|++.|..+
T Consensus 24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 3789999999999999999999999999999854
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.03 Score=44.41 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
.+|+|||+|--|..+|..|++.|. +++|+|.+
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 689999999999999999999998 89999874
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=93.65 E-value=0.04 Score=39.42 Aligned_cols=30 Identities=30% Similarity=0.477 Sum_probs=27.5
Q ss_pred eEEEEc-CChHHHHHHHHHHHcCC--cEEEEee
Q 018550 4 HVAVIG-AGAAGLVVGHELLREGH--TVVVYEK 33 (354)
Q Consensus 4 ~vvIIG-~G~aG~~~a~~l~~~g~--~v~lie~ 33 (354)
||.||| +|..|.++|..|...+. ++.|+|.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di 34 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI 34 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence 799999 69999999999999986 7999985
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=93.52 E-value=0.018 Score=47.97 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=29.0
Q ss_pred EEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 200 VILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 200 v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
|+|||+|++|+-+|..+++.|.+|.++++.+
T Consensus 8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~ 38 (336)
T d2bs2a2 8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (336)
T ss_dssp EEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999999999999998743
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=0.056 Score=40.53 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=30.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
.++|+|||+|-+|-+++..|.+.|. +++++.|.+
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~ 52 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 52 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence 4789999999999999999999998 788998864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.37 E-value=0.033 Score=41.80 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=29.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
.+|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CEEEEECCCccchhheeccccccccccccccccc
Confidence 579999999999999999999997 799999754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=93.27 E-value=0.05 Score=40.15 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=29.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.+|+|+|+|+.|+.++..+...|.++++++..+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~ 64 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE 64 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence 579999999999999988888999999998753
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=93.09 E-value=0.023 Score=47.53 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=29.3
Q ss_pred eEEEEccCCCHHHHHHHHh-----ccCCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLA-----GFAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~-----~~g~~v~~~~r~~~ 231 (354)
.|+|||||++|+-+|..|+ +.|.+|+++++++.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 4999999999999999996 56889999998764
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.99 E-value=0.044 Score=39.82 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|+++|+|=|..|-.+|..|+..|.+|++.|.+|
T Consensus 23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP 56 (163)
T d1v8ba1 23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDP 56 (163)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence 3789999999999999999999999999999864
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.96 E-value=0.059 Score=38.71 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=26.8
Q ss_pred CeEEEEc-CChHHHHHHHHHHH-cC--CcEEEEeeCC
Q 018550 3 RHVAVIG-AGAAGLVVGHELLR-EG--HTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG-~G~aG~~~a~~l~~-~g--~~v~lie~~~ 35 (354)
+||.||| +|..|.++|..|.. .+ .++.++|..+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~ 37 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence 5899999 59999999998864 34 5899999643
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.95 E-value=0.032 Score=39.45 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=30.0
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|+|+|.|..|..+|..|.+.|.+|+++..++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence 68999999999999999999999999998875
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=92.89 E-value=0.027 Score=47.46 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=29.4
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.|+|||+|..|+-+|..|++.|.+|.++++.
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence 4899999999999999999999999999985
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.86 E-value=0.022 Score=40.43 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=46.5
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccccccCCCCC-CeEEecceeEEecCCc--EEEccCcEEecCEEEE
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYD-NMWLHSMVERANEDGT--VVFRNGRVVSADVIMH 274 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~l~~~~-~~~~~~~v~~v~~~~~--v~~~~g~~~~~D~vi~ 274 (354)
|+++|+|.|..|..+|..|.+.|.+|+++..++ +..+++...+ .+.. .+.. -.+..-.--.+|.++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~--~~~~~~~~~~~~~~~--------gd~~~~~~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE--EKVNAYASYATHAVI--------ANATEENELLSLGIRNFEYVIV 70 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH--HHHHHTTTTCSEEEE--------CCTTCTTHHHHHTGGGCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH--HHHHHHHHhCCccee--------eecccchhhhccCCccccEEEE
Confidence 578999999999999999999999999998865 2333333333 1211 2220 0011101234899999
Q ss_pred cccCC
Q 018550 275 CTGLT 279 (354)
Q Consensus 275 a~G~~ 279 (354)
+++-.
T Consensus 71 ~~~~~ 75 (134)
T d2hmva1 71 AIGAN 75 (134)
T ss_dssp CCCSC
T ss_pred EcCch
Confidence 88865
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=92.82 E-value=0.028 Score=47.33 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=29.9
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++|||+|+.|+-+|..|++.|.+|.++++.+
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~ 37 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGE 37 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecCC
Confidence 48999999999999999999999999999864
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=92.64 E-value=0.055 Score=40.14 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=30.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|+|+|+|=++-+++..|.+.+.+++++.|..
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~ 51 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 51 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence 4689999999999999999999888999999863
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.53 E-value=0.027 Score=46.36 Aligned_cols=36 Identities=33% Similarity=0.288 Sum_probs=31.3
Q ss_pred CCCeEEEEccCCCHHHHHHHHhcc--CCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGF--AKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~--g~~v~~~~r~~~ 231 (354)
....|+|||+|+.|+.+|..|+++ |.+|+++.+.+.
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 86 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 86 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence 346699999999999999999864 889999999764
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=92.49 E-value=0.027 Score=47.54 Aligned_cols=31 Identities=16% Similarity=0.106 Sum_probs=29.2
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
.++|||+|..|+-+|..|++.|.+|.++++.
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4899999999999999999999999999985
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=92.49 E-value=0.074 Score=44.32 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=31.3
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 1 ~~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
++|+|+|+|| |..|.+++..|.++|++|+++-|+
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~ 36 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS 36 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence 4689999997 999999999999999999999875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.47 E-value=0.068 Score=39.27 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=29.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.+|+|+|+|+.|+.++..+...|.+|++++.+
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~ 60 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG 60 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence 57999999999999999999999999999864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=92.46 E-value=0.05 Score=40.49 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=29.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
.+|+|+|+|+.|++++..+...|. +|+++|+++
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~ 62 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 62 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence 579999999999999999999997 799998753
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.38 E-value=0.031 Score=47.47 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=29.8
Q ss_pred eEEEEccCCCHHHHHHHHhc------cCCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAG------FAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~------~g~~v~~~~r~~~ 231 (354)
.|+|||||++|.-+|..|++ .|.+|.++++...
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 59999999999999999987 7899999999763
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.30 E-value=0.15 Score=36.38 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=34.5
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHcC---CcEEEEeeCCCccceeec
Q 018550 1 MFRHVAVIGA-GAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIY 43 (354)
Q Consensus 1 ~~~~vvIIG~-G~aG~~~a~~l~~~g---~~v~lie~~~~~gg~~~~ 43 (354)
++.+|+|||| |+.|..+.+-|.+++ .++..+-.....|..+..
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~ 47 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGF 47 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceee
Confidence 5789999999 999999999998765 378888776666665554
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=92.19 E-value=0.067 Score=39.14 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=32.7
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++.+++|+|+|..|.+.+....+.|.+|+++..+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 57899999999999999999999999999998765
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=92.08 E-value=0.063 Score=39.71 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=32.9
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
..+++|+|+|+|-+|--++..|.+.|.+|+++.|...
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ 52 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVS 52 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHH
Confidence 3679999999999999999999999999999888753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.08 E-value=0.084 Score=39.18 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=28.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
..|+|+|+|+.|+.++..+...|. +|++.|..+
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~ 63 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDING 63 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence 579999999999999999999998 577777643
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=92.02 E-value=0.027 Score=42.67 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=30.6
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++|+|||+|..|.-+|..|++.|.+|+++.|++
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 569999999999999999999999999999865
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=91.97 E-value=0.082 Score=41.01 Aligned_cols=34 Identities=24% Similarity=0.543 Sum_probs=30.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|+|+|||+|-+|+-+|..+++.+.+++++=+..
T Consensus 32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence 4789999999999999999999999888887654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.86 E-value=0.0079 Score=47.50 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=26.7
Q ss_pred eEEEEccCCCHHHHHHHHhccCC------EEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAK------EVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~------~v~~~~r~~ 230 (354)
+|+|||+|.+|+-+|..|++.|. +++++.+..
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~ 39 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF 39 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence 69999999999999999999875 466666543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.83 E-value=0.048 Score=43.76 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=30.4
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
++|+|.|| |..|..++..|.+.|++|+.+++.+
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 67999998 9999999999999999999998753
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=91.82 E-value=0.11 Score=39.10 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=30.5
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG-~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|+|+|.| +|-.|..+|+.|+++|.+|++++|+.
T Consensus 23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 47889999 58999999999999999999999864
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.72 E-value=0.11 Score=43.56 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.2
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|.|| |..|..++..|.+.|++|+++++.
T Consensus 15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~ 48 (363)
T d2c5aa1 15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWK 48 (363)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence 478999995 999999999999999999999864
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.095 Score=42.92 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=29.9
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEee
Q 018550 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEK 33 (354)
Q Consensus 2 ~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~ 33 (354)
+|+|+|.|| |..|..++..|.+.|++|+.+++
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~ 33 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 33 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 588999998 99999999999999999999986
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.67 E-value=0.059 Score=33.87 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=30.4
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
|+|.|+|+|..|.-++.+-.+.|.++.++...+
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 689999999999999999999999999998765
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=91.65 E-value=0.028 Score=46.69 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=29.7
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~ 40 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 48999999999999999999999999998755
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.50 E-value=0.11 Score=38.55 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=29.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
..|+|+|+|+.|+.++..+...|. +|+++|.++
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~ 64 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK 64 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence 469999999999999999999995 799999754
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.49 E-value=0.08 Score=39.42 Aligned_cols=32 Identities=22% Similarity=0.501 Sum_probs=28.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||+|-++-+++..|.+.+ ++.|+.|.
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~ 49 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT 49 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence 478999999999999999998777 89999885
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.49 E-value=0.1 Score=39.52 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=27.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
.+|+|+|+|+.|+.++..+...|. +|+++|..
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~ 59 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLN 59 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence 579999999999999999888887 78888864
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=91.48 E-value=0.096 Score=43.38 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=28.8
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCcEEEEee
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEK 33 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~ 33 (354)
++|+|+|| |..|..++..|.+.|++|+++++
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 46999998 99999999999999999999986
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.22 E-value=0.089 Score=39.05 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=33.0
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
++.+|+|+|+|..|...+....+.|++|+++..+..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 468899999999999999999999999999987763
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.11 E-value=0.16 Score=37.90 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||.|..|-..|..|...|.+|..+++..
T Consensus 42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CceEEEeccccccccceeeeeccccccccccccc
Confidence 4689999999999999999999999999999854
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.89 E-value=0.071 Score=40.15 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=29.7
Q ss_pred eEEEE-ccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 199 VVILI-GHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~Vi-G~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+|.|| |.|..|..+|..|++.|.+|+++.|++.
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e 35 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 58899 5699999999999999999999998763
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=90.88 E-value=0.095 Score=38.24 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=31.3
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCC-EEEEEEecC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSV 230 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~~r~~ 230 (354)
...++++|||+|.+|..++..|...|. +++++.|..
T Consensus 22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~ 58 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY 58 (159)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence 367999999999999999999999985 688887764
|
| >d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: D-Alanine ligase N-terminal domain domain: D-Ala-D-Ala ligase, N-domain species: Escherichia coli, gene ddlB [TaxId: 562]
Probab=90.69 E-value=0.17 Score=33.17 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCCeEEEEcCChH---------HHHHHHHHHHcCCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAA---------GLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~a---------G~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+++|+|+-||++ |.++...|.+.++++..+|..+
T Consensus 1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~ 44 (96)
T d1iowa1 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE 44 (96)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCcc
Confidence 7899999999986 6777888888999999999754
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.68 E-value=0.074 Score=39.76 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=30.1
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+|.|||+|..|.-+|..|++.|.+|+++.|...
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~ 34 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFD 34 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 589999999999999999999999999988543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=90.53 E-value=0.084 Score=36.92 Aligned_cols=32 Identities=34% Similarity=0.440 Sum_probs=27.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
|+|+|+|.|..|..++..|. +.++.++|.++.
T Consensus 1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~ 32 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELR--GSEVFVLAEDEN 32 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence 57999999999999999995 556788888654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=90.49 E-value=0.16 Score=42.09 Aligned_cols=34 Identities=29% Similarity=0.202 Sum_probs=30.9
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG-~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|+|+|.| +|..|..++..|.+.|++|..+++..
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 48999999 58999999999999999999999853
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=90.18 E-value=0.14 Score=37.64 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=30.9
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccC-CEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 230 (354)
+.++|+|+|+|-+|--++..|.+.| ++|+++.|+.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence 4588999999999999999999998 4799888865
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.18 E-value=0.16 Score=34.42 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=31.3
Q ss_pred CCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
..+|.|+|||..|..+|.+..+.|.++.++..++.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 46799999999999999999999999999887653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=90.12 E-value=0.16 Score=37.55 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=28.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
..|+|+|+|+.|+.++..+...|. +|+++|.++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~ 62 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK 62 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence 469999999999999999999997 688887753
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.09 E-value=0.13 Score=37.79 Aligned_cols=39 Identities=18% Similarity=-0.015 Sum_probs=33.1
Q ss_pred CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 193 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
...++++|+|+|+|.+|.-.++.+...|.+|..+.+++.
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~ 62 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR 62 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence 344789999999999999999888888999988888663
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=89.94 E-value=0.19 Score=38.59 Aligned_cols=33 Identities=36% Similarity=0.375 Sum_probs=29.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
..+|+|.|+|.||+..|..|.+.+. ++.++|+.
T Consensus 26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~ 59 (222)
T d1vl6a1 26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 59 (222)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred hcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence 3689999999999999999999887 78899884
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.91 E-value=0.15 Score=38.36 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=33.8
Q ss_pred CCCCCeEEEEc-cCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 194 PFQDQVVILIG-HYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 194 ~~~~~~v~ViG-~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
..++|+++|.| +|-+|.++|..|++.|.+|+++.|...
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~ 58 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD 58 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence 45789999999 588999999999999999999998764
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=89.89 E-value=0.11 Score=38.32 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=32.3
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++++++|+|+|-+|--++..|.+.+++|+++.|..
T Consensus 16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~ 51 (171)
T d1p77a1 16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 51 (171)
T ss_dssp CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence 467999999999999999999988888999998876
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.74 E-value=0.25 Score=36.41 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=26.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEE-EEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVV-VYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~-lie~~ 34 (354)
.+|+|+|+|+.|++++..+...|.+++ +.+.+
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~ 62 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV 62 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence 479999999999999999988898655 45543
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=89.65 E-value=0.086 Score=44.24 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=30.2
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.++|||+|..|+-+|..|++.|.+|.++++.+.
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~ 36 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 36 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence 489999999999999999999999999998753
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.53 E-value=0.2 Score=41.42 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=29.9
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
+|+|+|.|| |..|..++..|.+.|++|+.+|+.
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~ 49 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF 49 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence 478888887 999999999999999999999863
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.36 E-value=0.31 Score=36.21 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=33.1
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..++++.|||-|.+|-++|..+...|.+|..+.+..
T Consensus 40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred ccCceEEEeccccccccceeeeeccccccccccccc
Confidence 578999999999999999999999999999997765
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.34 E-value=0.14 Score=43.87 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
.+|+|||+|--|..+|..|+..|+ +++|+|.+
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D 70 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD 70 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 579999999999999999999998 89999974
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=89.24 E-value=0.1 Score=36.39 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=27.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-cCCc-EEEEeeCCCc
Q 018550 2 FRHVAVIGAGAAGLVVGHELLR-EGHT-VVVYEKGEQV 37 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~-~g~~-v~lie~~~~~ 37 (354)
+++|+|+|||-+|.+++..+.. .+++ +.+||.++..
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k 40 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK 40 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence 5689999999999999887754 3565 5667765544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=89.24 E-value=0.16 Score=37.22 Aligned_cols=38 Identities=21% Similarity=0.132 Sum_probs=32.7
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
...+++|+|+|+|.+|.-+++.++..|.+|..+.+++.
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~ 61 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR 61 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence 34678999999999999999999999999988877653
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=89.23 E-value=0.1 Score=38.18 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=29.3
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|.|||.|.+|--+|..|.+.|.+|+.+.|++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 58999999999999999999999999987764
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.22 E-value=0.23 Score=36.53 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=28.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
..|+|+|+|+.|+.++..++..+. +|+.+++.+
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~ 63 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP 63 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence 469999999999999999999887 688888754
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=89.12 E-value=0.26 Score=37.24 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||.|-.|..+|..|...|.+|..+|+..
T Consensus 45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~ 78 (199)
T d1dxya1 45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP 78 (199)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred ceeeeeeecccccccccccccccceeeeccCCcc
Confidence 3689999999999999999999999999999753
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.02 E-value=0.17 Score=38.51 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=28.1
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHcCC--cEEEEee
Q 018550 1 MFRHVAVIGA-GAAGLVVGHELLREGH--TVVVYEK 33 (354)
Q Consensus 1 ~~~~vvIIG~-G~aG~~~a~~l~~~g~--~v~lie~ 33 (354)
++|+|+|.|| |..|-.++..|.+.|. +|+.+-|
T Consensus 1 t~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r 36 (212)
T d2a35a1 1 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR 36 (212)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeC
Confidence 4689999999 9999999999999997 5555544
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.81 E-value=0.24 Score=40.29 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=30.4
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+|+|.|| |+.|..++..|.++|++|..+++..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~ 34 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR 34 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence 67999998 9999999999999999999999854
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=88.77 E-value=0.19 Score=40.58 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=31.0
Q ss_pred CCeEEEEcc-CCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 197 DQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 197 ~~~v~ViG~-G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.++|+|.|| |.+|-.++..|.+.|.+|+.+.|...
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 366999996 99999999999999999999998653
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.77 E-value=0.23 Score=40.78 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=29.9
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
+|.++|.|| |+.|..++..|.+.|++|+.+++.
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~ 34 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRR 34 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence 467888887 999999999999999999999985
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=88.47 E-value=0.25 Score=32.39 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHH-HHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVV-GHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~-a~~l~~~g~~v~lie~~~ 35 (354)
.++|-+||-|=+|+++ |..|.++|++|+--|...
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~ 42 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 42 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 4789999999999888 899999999999999753
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=88.47 E-value=0.26 Score=37.14 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|.|||.|-.|..+|..|...|.+|..+++.
T Consensus 43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~ 75 (197)
T d1j4aa1 43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF 75 (197)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence 378999999999999999999999999999864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=88.20 E-value=0.21 Score=37.10 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=31.9
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccCC-EEEEEEecCC
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVA 231 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~~r~~~ 231 (354)
..++++|+|+|+|++|.-+++.+...|. +|+++.+++.
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~ 64 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN 64 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccc
Confidence 3468999999999999999999988896 6888877653
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.15 E-value=0.28 Score=35.64 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=30.2
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
++|.+||-|.+|..+|..|.+.|.+|.++.|.+
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~ 34 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 34 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence 479999999999999999999999999987765
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.09 E-value=0.22 Score=36.34 Aligned_cols=37 Identities=14% Similarity=-0.058 Sum_probs=32.1
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..++++|+|+|+|.+|.-+++.++..|.+|..+.+++
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence 3467999999999999999998888899988887765
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.03 E-value=0.21 Score=36.99 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=30.4
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++++++|+|+|-+|--++..|.+.+ +|+++.|..
T Consensus 16 ~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~ 50 (177)
T d1nvta1 16 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV 50 (177)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred cCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence 46799999999999998999998776 899998875
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=88.01 E-value=0.2 Score=41.44 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=27.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHcCCcEEEEe
Q 018550 1 MFRHVAVIG-AGAAGLVVGHELLREGHTVVVYE 32 (354)
Q Consensus 1 ~~~~vvIIG-~G~aG~~~a~~l~~~g~~v~lie 32 (354)
++|+|+|.| +|..|..++..|.+.|++|.++.
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~ 33 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV 33 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 578999999 59999999999999998644443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=87.92 E-value=0.15 Score=36.65 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=31.5
Q ss_pred CCeEEEEc-cCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 197 DQVVILIG-HYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 197 ~~~v~ViG-~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
-++|.||| .|.+|--+|..|.+.|.+|+++.+...
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~ 44 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW 44 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence 37899999 699999999999999999999988664
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=87.91 E-value=0.35 Score=36.58 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=30.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|-|.|-.|..+|..|.+.|.+|++.|.+
T Consensus 27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d 59 (201)
T d1c1da1 27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD 59 (201)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence 378999999999999999999999999998864
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.82 E-value=0.27 Score=41.45 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=28.5
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCcEEEEe
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYE 32 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie 32 (354)
++|+|.|| |+.|..++..|.+.|++|+++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 68999997 9999999999999999999997
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.74 E-value=0.13 Score=42.70 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=27.1
Q ss_pred CeEEEEccCCCHHHHHHHHhc----cCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAG----FAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~----~g~~v~~~~r~~ 230 (354)
-.|+|||+|+.|+-+|..+++ .|.+|.++++.+
T Consensus 22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~ 58 (356)
T d1jnra2 22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 58 (356)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence 349999999999888887754 688999998744
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=87.47 E-value=0.31 Score=36.64 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=30.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|.|||.|-.|-.+|..|...|.+|..+++.
T Consensus 49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~ 81 (193)
T d1mx3a1 49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY 81 (193)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred CceEEEeccccccccceeeeeccccceeeccCc
Confidence 368999999999999999999999999999974
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.41 E-value=0.32 Score=40.04 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=29.5
Q ss_pred CeE-EEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHV-AVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~v-vIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|+| +|.|| |..|..++..|.++|++|+.+++..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 578 78887 8999999999999999999999853
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=87.35 E-value=0.3 Score=35.82 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=26.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
..|+|+|+|+.|+.++..+...|. .|++.+++
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~ 66 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK 66 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence 469999999999999999988886 56667764
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=87.31 E-value=0.14 Score=41.58 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=27.5
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.|+|||+|..|+-+|..+++.+ +|.+++..+
T Consensus 9 DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~ 39 (305)
T d1chua2 9 DVLIIGSGAAGLSLALRLADQH-QVIVLSKGP 39 (305)
T ss_dssp SEEEECCSHHHHHHHHHHTTTS-CEEEECSSC
T ss_pred CEEEECccHHHHHHHHHhhcCC-CEEEEECCC
Confidence 4999999999999999998877 899998765
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.29 E-value=0.3 Score=36.93 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=47.3
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCCccccccCCCCC-CeEE---ecceeEEecCCcEEEccC--cEE-ecCE
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYD-NMWL---HSMVERANEDGTVVFRNG--RVV-SADV 271 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~l~~~~-~~~~---~~~v~~v~~~~~v~~~~g--~~~-~~D~ 271 (354)
+|.|||.|++|.-+|..|++.|.+|+.+..... ..+++.+.. .+.. ...+......+.+...+. +.+ .+|.
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~--~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~ 79 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST--KIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDV 79 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSE
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH--HHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCE
Confidence 589999999999999999999999988865431 222221111 1111 111111122333444333 223 5899
Q ss_pred EEEcccCC
Q 018550 272 IMHCTGLT 279 (354)
Q Consensus 272 vi~a~G~~ 279 (354)
+++|.+.-
T Consensus 80 i~i~VpTP 87 (202)
T d1mv8a2 80 SFICVGTP 87 (202)
T ss_dssp EEECCCCC
T ss_pred EEEecCcc
Confidence 99999873
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.98 E-value=0.24 Score=37.57 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=31.1
Q ss_pred CCeEEEEcc-CCCHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~-G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
-++|+|+|+ |.+|-.++..|.+.|.+|+++.|++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~ 37 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence 378999995 9999999999999999999999976
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.97 E-value=0.28 Score=35.98 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=30.6
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCC-EEEEEEecC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSV 230 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~~r~~ 230 (354)
.++++|+|+|+|++|+-+++.+...|. +|.++.+.+
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~ 61 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 61 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence 467899999999999999999988887 687777665
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.96 E-value=0.39 Score=37.10 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=30.2
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCC--cEEEEeeCC
Q 018550 2 FRHVAVIGA-GAAGLVVGHELLREGH--TVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~-G~aG~~~a~~l~~~g~--~v~lie~~~ 35 (354)
+++|+|.|| |..|..++..|.+.|. +|.++.|++
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~ 50 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK 50 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence 478999998 9999999999999985 899999854
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.94 E-value=0.36 Score=34.70 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=30.3
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCC---cEEEEeeCCCccceee
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGH---TVVVYEKGEQVGGSWI 42 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~---~v~lie~~~~~gg~~~ 42 (354)
++|+|||| |+.|..+.+-|.++.+ ++..+..+...|....
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~ 45 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK 45 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccccc
Confidence 68999999 9999999999999964 5666655444444433
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.86 E-value=0.77 Score=35.56 Aligned_cols=34 Identities=35% Similarity=0.601 Sum_probs=29.1
Q ss_pred CCeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|.++|-||+- .|.++|..|++.|.+|++.+++.
T Consensus 7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~ 41 (237)
T d1uzma1 7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS 41 (237)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 46788888865 69999999999999999999864
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.75 E-value=0.5 Score=35.23 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||.|..|..+|..|...|.+|..+++..
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d1sc6a1 44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN 77 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred ceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence 4689999999999999999999999999999753
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.72 E-value=0.26 Score=35.74 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=34.1
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
...+|+++|+|-|.+|-.+|..++..|.+|++....+
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred eecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 3578999999999999999999999999999998876
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=86.62 E-value=0.38 Score=35.67 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=31.4
Q ss_pred CCCCeEEEEccCCCHHHHHHHHhccCC-EEEEEEecCC
Q 018550 195 FQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVA 231 (354)
Q Consensus 195 ~~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~~r~~~ 231 (354)
..+++++|+|+|-+|--++..|...|. +++++.|.+.
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~ 53 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 53 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence 467999999999999999999988874 6888888763
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=86.60 E-value=0.37 Score=35.45 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=28.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
..|+|+|+|..|+.++..++..|. +|+.++.++
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~ 63 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK 63 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence 469999999999999999999986 788888753
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.59 E-value=0.43 Score=34.79 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.++|+|||-|.-|-+=|..|+..|++|++=-|.
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~ 48 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS 48 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCC
Confidence 478999999999999999999999999987664
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=86.58 E-value=0.35 Score=35.26 Aligned_cols=39 Identities=15% Similarity=-0.042 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 193 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
...++++|+|+|+|.+|.-.++.+...|.++.++.+++.
T Consensus 27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~ 65 (168)
T d1uufa2 27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA 65 (168)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence 345789999999999999999888888988877776553
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=86.44 E-value=0.27 Score=35.29 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=30.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+++|+|.|..|..++..|.+.|.+++++...+
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~ 36 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 579999999999999999999999999998765
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=86.42 E-value=0.23 Score=41.08 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=32.9
Q ss_pred CCCCeEEEEcc-CCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 195 FQDQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 195 ~~~~~v~ViG~-G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+++|+|+|.|| |.+|-.++..|.+.|.+|..+.|...
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~ 43 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP 43 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 36799999985 89999999999999999999998664
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=86.29 E-value=0.3 Score=38.99 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=31.5
Q ss_pred CCeEEEEcc-CCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 197 DQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 197 ~~~v~ViG~-G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.++|+|.|+ |.+|-.++..|.+.|.+|+.+.|.+.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~ 38 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST 38 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence 377999997 99999999999999999999998764
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=86.17 E-value=0.33 Score=35.18 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=29.3
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|.|||-|.+|.-+|..|.+.|.+|+++.|.+
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~ 33 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 33 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 58999999999999999999999999887765
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=86.15 E-value=0.26 Score=40.93 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=28.2
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++|||+|..|+-+|..|++. .+|.++++.+
T Consensus 28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~ 58 (351)
T d1ju2a1 28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS 58 (351)
T ss_dssp EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence 589999999999999999986 7899999875
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=86.09 E-value=0.38 Score=39.92 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=28.5
Q ss_pred CeEEEEc-CChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 3 RHVAVIG-AGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG-~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
|.|+|.| +|..|..++..|.+.|++|+.+++.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~ 34 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRR 34 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence 5677889 6999999999999999999999985
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=86.03 E-value=0.25 Score=40.10 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=30.3
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
+++|+|.|| |.-|..++..|.+.|+.+++++...
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~ 36 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD 36 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch
Confidence 679999998 9999999999999999988887543
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.70 E-value=0.19 Score=36.34 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=26.0
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCC-------cEEEEeeC
Q 018550 2 FRHVAVIGA-GAAGLVVGHELLREGH-------TVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~-G~aG~~~a~~l~~~g~-------~v~lie~~ 34 (354)
+.+|.|||| |..|.++|..|...+. ++.++|..
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~ 43 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT 43 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence 468999996 9999999999986542 46666653
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=85.65 E-value=0.45 Score=34.89 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=25.3
Q ss_pred CCCeEEEEcCChHHHHHHH--HHHHc----CCcEEEEeeCC
Q 018550 1 MFRHVAVIGAGAAGLVVGH--ELLRE----GHTVVVYEKGE 35 (354)
Q Consensus 1 ~~~~vvIIG~G~aG~~~a~--~l~~~----g~~v~lie~~~ 35 (354)
.+.||+|||||..|.+.+. .|.+. +.+++|+|.++
T Consensus 1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~ 41 (171)
T d1obba1 1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE 41 (171)
T ss_dssp CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence 3579999999999976543 23332 35899999864
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=85.63 E-value=0.41 Score=37.09 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=29.2
Q ss_pred CCeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
..+|+|.||+- .|.+.|..|+++|++|+++++..
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~ 36 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA 36 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 45799999864 49999999999999999999864
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=85.54 E-value=0.49 Score=37.53 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCeEEEEcC-C--hHHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGA-G--AAGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~-G--~aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
.|.++|.|| | =.|.+.|..|+++|.+|++.++++.
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~ 42 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES 42 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 477889986 3 3799999999999999999998654
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.53 E-value=0.5 Score=36.61 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=29.8
Q ss_pred CCeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|+|+|.||+- .|.++|..|+++|++|.++++..
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~ 36 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE 36 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58899999955 69999999999999999998753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.51 E-value=0.43 Score=34.64 Aligned_cols=37 Identities=11% Similarity=-0.055 Sum_probs=31.4
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..++++|+|.|+|++|.-++..+...|.+|..+.+++
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~ 61 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD 61 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence 3467999999999999998888888899988877655
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=85.46 E-value=0.24 Score=41.86 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=29.1
Q ss_pred eEEEEccCCCHHHHHHHHhccC-CEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 230 (354)
.++|||+|..|+-+|..|++.+ .+|.++++.+
T Consensus 26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~ 58 (391)
T d1gpea1 26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF 58 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 3899999999999999999988 5899999875
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.25 E-value=0.32 Score=42.90 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=29.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCC-cEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~-~v~lie~~ 34 (354)
.+|+|||+|..|..+|..|...|+ +++|+|.+
T Consensus 26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d 58 (529)
T d1yova1 26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGN 58 (529)
T ss_dssp CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 589999999999999999999998 79999874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.06 E-value=0.52 Score=34.52 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=28.1
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.+|+|+|| |+.|+++...+...|.+|+.+...
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~ 62 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGT 62 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEEeccccccccccccccccCccccccccc
Confidence 47999996 999999999888899999988864
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.02 E-value=0.69 Score=29.62 Aligned_cols=31 Identities=23% Similarity=0.483 Sum_probs=27.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHcCCcEEEEee
Q 018550 3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~ 33 (354)
++|+|||+|----+.|+.|.+...++.++-.
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~~v~~~pG 31 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPG 31 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCeEEEecC
Confidence 5899999999999999999998888777743
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.67 E-value=0.39 Score=36.81 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=26.8
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHcCCcEEEEe
Q 018550 2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYE 32 (354)
Q Consensus 2 ~~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie 32 (354)
+++|+|.|| |..|..++..|.+.|+++.+++
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~ 34 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG 34 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence 578999995 9999999999999998766654
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=84.61 E-value=0.52 Score=35.12 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=31.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||.|..|...|..|...|.+|..+++..
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred ccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence 3689999999999999999999999999999853
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.60 E-value=0.53 Score=38.74 Aligned_cols=31 Identities=32% Similarity=0.406 Sum_probs=27.3
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCcEEEEee
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEK 33 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~ 33 (354)
|-|+|.|| |+.|..++..|.+.|++|+++++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~ 33 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN 33 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence 44777776 89999999999999999999985
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=84.38 E-value=0.56 Score=36.83 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=32.1
Q ss_pred CCCCeEEEEccCC-CHHHHHHHHhccCCEEEEEEecCC
Q 018550 195 FQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 195 ~~~~~v~ViG~G~-~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+++|.++|.|++. +|.++|..|++.|.+|.++.|...
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~ 40 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE 40 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 4689999998764 999999999999999999988764
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=84.38 E-value=0.34 Score=40.00 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=32.0
Q ss_pred CCCeEEEEcc-CCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 196 QDQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~-G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+.|+|+|+|+ |.+|-.++..|.+.|.+|..+.|+..
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~ 38 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK 38 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcc
Confidence 3488999996 99999999999999999999999653
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=84.22 E-value=1.7 Score=33.83 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=27.8
Q ss_pred CCeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.|.++|-||+- .|.+.|..|++.|.+|++.+++
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~ 38 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN 38 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 36678888854 5889999999999999999975
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=84.15 E-value=0.53 Score=38.31 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=27.6
Q ss_pred eEEEEcC-ChHHHHHHHHHHHcCCcEEEEee
Q 018550 4 HVAVIGA-GAAGLVVGHELLREGHTVVVYEK 33 (354)
Q Consensus 4 ~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~ 33 (354)
+|+|.|| |..|..++..|.++|++|+.+++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 6888876 99999999999999999999985
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=84.14 E-value=0.59 Score=38.28 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=28.4
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcC-CcEEEEeeC
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREG-HTVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g-~~v~lie~~ 34 (354)
++|+|.|| |+.|..++..|.++| ++|..+++.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~ 34 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG 34 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 47999998 999999999999998 589999874
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.11 E-value=0.67 Score=33.67 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=27.9
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCC-cEEEEeeCC
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGH-TVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~-~v~lie~~~ 35 (354)
.+|+|+|+ |+.|+.++..+...|. +|++++.++
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~ 63 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE 63 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred CEEEEEeccccceeeeeecccccccccccccccch
Confidence 47999995 9999999999988885 888888753
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=84.01 E-value=0.32 Score=38.09 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=30.7
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccC-CEEEEEEecC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 230 (354)
+.++|+|||.|-+|.++|..|++.| .+++++..+.
T Consensus 29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 5689999999999999999999998 5788887655
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=83.91 E-value=0.65 Score=36.27 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=26.1
Q ss_pred CeEEEEcCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G-~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|-|+|-||+ =.|.++|+.|++.|.+|+++++++
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~ 35 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD 35 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 335666764 468999999999999999999754
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=83.90 E-value=0.59 Score=36.62 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=28.7
Q ss_pred CCeEEEEcCCh---HHHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIGAGA---AGLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG~G~---aG~~~a~~l~~~g~~v~lie~~~~ 36 (354)
.|.++|.||+- -|.++|..|++.|.+|++.++++.
T Consensus 5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~ 42 (258)
T d1qsga_ 5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK 42 (258)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 36788888754 578999999999999999998754
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.85 E-value=0.4 Score=38.09 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=32.7
Q ss_pred CCCCCCeEEEEccCC-CHHHHHHHHhccCCEEEEEEecC
Q 018550 193 NPFQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 193 ~~~~~~~v~ViG~G~-~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
...++|+++|.|++. +|..+|..|++.|.+|.++.|+.
T Consensus 10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~ 48 (269)
T d1xu9a_ 10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK 48 (269)
T ss_dssp GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 345789999998764 99999999999999999999875
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=83.67 E-value=0.55 Score=37.02 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=28.5
Q ss_pred CeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|.++|-||+- .|.++|+.|++.|.+|++.+++.
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 43 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA 43 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 6677888866 59999999999999999999864
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=83.52 E-value=0.64 Score=36.47 Aligned_cols=33 Identities=27% Similarity=0.566 Sum_probs=26.7
Q ss_pred CeE-EEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHV-AVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~v-vIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
||| +|-||+- .|.+.|..|++.|.+|++.++++
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~ 35 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND 35 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 566 4557754 69999999999999999999853
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=83.51 E-value=0.61 Score=36.72 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=27.5
Q ss_pred CCeEEEEcC-Ch--HHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGA-GA--AGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~-G~--aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.|.++|.|| |- .|.+.|+.|++.|.+|++.+++
T Consensus 6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~ 41 (268)
T d2h7ma1 6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD 41 (268)
T ss_dssp TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 377888885 44 6888999999999999998875
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=83.42 E-value=0.33 Score=35.75 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=31.3
Q ss_pred CeEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 198 ~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.+|.|||-|.+|.-+|..|.+.|.+|+++.|++.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~ 36 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS 36 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 5799999999999999999999999999988764
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=83.42 E-value=1.1 Score=30.74 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=28.1
Q ss_pred CCCeEEEEccCC-----------CHHHHHHHHhccCCEEEEEEecC
Q 018550 196 QDQVVILIGHYA-----------SGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 196 ~~~~v~ViG~G~-----------~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
..++|+|+|+|+ ++.+++..|++.|.++.++...+
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP 51 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP 51 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence 458899999986 36677888899999988886665
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.20 E-value=0.52 Score=37.37 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=28.7
Q ss_pred CeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|.++|.||+- .|.++|+.|+++|.+|++.+++.
T Consensus 15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~ 48 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK 48 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 6788888876 59999999999999999999854
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=83.06 E-value=0.33 Score=35.31 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=23.1
Q ss_pred CeEEEEcCChHHHHHHHHHH--Hc----CCcEEEEeeCC
Q 018550 3 RHVAVIGAGAAGLVVGHELL--RE----GHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~--~~----g~~v~lie~~~ 35 (354)
+||+|||||-.|...+..+. .. .-++.|+|.++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~ 39 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDE 39 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCc
Confidence 47999999977766665432 22 24899999753
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=82.88 E-value=0.53 Score=37.20 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=26.9
Q ss_pred CCeEEEEc-CChH----HHHHHHHHHHcCCcEEEEeeCCC
Q 018550 2 FRHVAVIG-AGAA----GLVVGHELLREGHTVVVYEKGEQ 36 (354)
Q Consensus 2 ~~~vvIIG-~G~a----G~~~a~~l~~~g~~v~lie~~~~ 36 (354)
++.|+|.| ||.+ .+.+|..|++.|++|.+||-+++
T Consensus 1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q 40 (269)
T d1cp2a_ 1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 46788988 6654 45556677889999999999765
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=82.80 E-value=0.55 Score=37.03 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=32.1
Q ss_pred CCCCeEEEEccCC-CHHHHHHHHhccCCEEEEEEecCC
Q 018550 195 FQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 195 ~~~~~v~ViG~G~-~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+++|.++|.|++- +|..+|..|++.|.+|.++.|+..
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~ 44 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA 44 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 4678888888765 999999999999999999998764
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=82.78 E-value=1.2 Score=32.24 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=32.1
Q ss_pred CCCCCeEEEEccCC-CHHHHHHHHhccCCEEEEEEecC
Q 018550 194 PFQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 194 ~~~~~~v~ViG~G~-~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
...+++++|||.+. +|.-++..|.+.|+.|++++...
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t 71 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT 71 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence 35789999999765 99999999999999999997654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=82.75 E-value=0.63 Score=34.82 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 193 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+..++++.|||-|.+|-++|..+...|.+|..+.+..
T Consensus 45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~ 82 (193)
T d1mx3a1 45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL 82 (193)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred eeeeCceEEEeccccccccceeeeeccccceeeccCcc
Confidence 44578999999999999999999999999998887654
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=82.48 E-value=0.72 Score=37.84 Aligned_cols=32 Identities=31% Similarity=0.288 Sum_probs=28.6
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
++|+|.|| |..|..++..|.++|++|..+.|+
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~ 44 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARS 44 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence 68999997 999999999999999999877653
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=82.39 E-value=0.46 Score=33.80 Aligned_cols=34 Identities=26% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCeEEEEccCCCHHHHHHHHhccC--CEEEEEEecC
Q 018550 197 DQVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~~g~e~a~~l~~~g--~~v~~~~r~~ 230 (354)
..+|.|||+|.+|.-+|..|+..+ .++.++.+..
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 468999999999999999998875 6899997654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=82.35 E-value=0.82 Score=35.28 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=29.1
Q ss_pred CCeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|.++|.||+- .|.++|..|++.|++|++.++++
T Consensus 4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~ 38 (234)
T d1o5ia_ 4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE 38 (234)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 47788999854 69999999999999999999863
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.30 E-value=0.36 Score=38.65 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=26.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHc----CC-------cEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE----GH-------TVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~----g~-------~v~lie~~ 34 (354)
.+|||.|+|.||+.+|..|... |. ++.++|+.
T Consensus 26 ~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~ 68 (294)
T d1pj3a1 26 HKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKY 68 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETT
T ss_pred cEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCC
Confidence 5799999999999999997654 43 59999985
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=82.23 E-value=0.54 Score=35.32 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=32.4
Q ss_pred CCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+..+++|.|||-|.+|-++|..+...|.+|..+.+..
T Consensus 40 el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~ 76 (197)
T d1j4aa1 40 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR 76 (197)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence 4578999999999999999999999999998876543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.22 E-value=0.84 Score=35.52 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=28.1
Q ss_pred CeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|.++|.||+- .|.+.|+.|++.|.+|++.+++.
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~ 41 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ 41 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 6788888865 48899999999999999999853
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=82.21 E-value=0.39 Score=34.33 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=29.4
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecCC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+|.|||.|.+|.-+|..|.+.|.+|+++.+.+.
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~ 34 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS 34 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence 589999999999999999999999988876653
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.19 E-value=0.95 Score=36.40 Aligned_cols=43 Identities=35% Similarity=0.485 Sum_probs=34.8
Q ss_pred CCCCCCCCCCeEEEEccC-CCHHHHHHHHhccCCEEEEEEecCC
Q 018550 189 YRIPNPFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 189 ~~~~~~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
|..+...++|.++|.|++ -+|..+|..|++.|.+|.+..|+..
T Consensus 4 y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~ 47 (297)
T d1yxma1 4 YLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLE 47 (297)
T ss_dssp SBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 444455688989999875 4999999999999999999988653
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=82.15 E-value=0.76 Score=35.67 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=32.2
Q ss_pred CCCCeEEEEccCC-CHHHHHHHHhccCCEEEEEEecCC
Q 018550 195 FQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 195 ~~~~~v~ViG~G~-~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
+++|.++|.|++- +|..+|..|++.|.+|.+..|+..
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~ 40 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER 40 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 4678899998765 999999999999999999988763
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=82.14 E-value=0.74 Score=36.06 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=27.6
Q ss_pred CeEEEEcCCh---HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGA---AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~---aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|.++|.||+- .|.+.|+.|++.|.+|++.++.+
T Consensus 9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~ 44 (256)
T d1ulua_ 9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (256)
T ss_dssp CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence 6788888642 69999999999999999888754
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=82.12 E-value=0.76 Score=35.42 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=27.2
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|.++|-|| +=.|.+.|..|+++|.+|++.+++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~ 35 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRR 35 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 55667777 4458899999999999999999864
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=82.05 E-value=0.83 Score=36.30 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=28.1
Q ss_pred CeEEEEcCC-hHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G-~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|.++|-||+ =.|.++|..|++.|.+|++.+++.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA 39 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 678888874 459999999999999999999853
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=82.00 E-value=0.46 Score=35.83 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 193 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+..++++.|||-|.+|-++|..+...|.+|..+.+..
T Consensus 41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~ 78 (199)
T d1dxya1 41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP 78 (199)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred ccccceeeeeeecccccccccccccccceeeeccCCcc
Confidence 34567999999999999999999999999998887754
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.95 E-value=0.87 Score=35.36 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=27.9
Q ss_pred CeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeC
Q 018550 3 RHVAVIGAGA-AGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~ 34 (354)
|.++|.||+- .|.+.|..|++.|.+|++.+++
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~ 38 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRT 38 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 6788888864 5899999999999999999985
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.91 E-value=0.96 Score=35.14 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=27.8
Q ss_pred CeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|-++|.||+- .|.+.|..|+++|++|++.+++.
T Consensus 6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~ 39 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPN 39 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 5567778765 48899999999999999999864
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.87 E-value=1 Score=35.05 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=32.5
Q ss_pred CCCCCeEEEEccCC-CHHHHHHHHhccCCEEEEEEecCC
Q 018550 194 PFQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 194 ~~~~~~v~ViG~G~-~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
...+|.++|.|++. +|.++|..|++.|.+|.+..|+..
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~ 42 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH 42 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 35788888888765 999999999999999999988653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=81.76 E-value=0.52 Score=30.25 Aligned_cols=73 Identities=7% Similarity=0.100 Sum_probs=46.7
Q ss_pred CeEEEEccCCCHHH-HHHHHhccCCEEEEEEecCCccccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCEEEEc
Q 018550 198 QVVILIGHYASGLD-IKRDLAGFAKEVHIASRSVADETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHC 275 (354)
Q Consensus 198 ~~v~ViG~G~~g~e-~a~~l~~~g~~v~~~~r~~~~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~vi~a 275 (354)
.+|-+||-|-+|+- +|..|.+.|.+|+--.+.. ....++|++.+ .++...... ....+|+||+.
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~-~~~t~~L~~~Gi~i~~gh~~~-------------~i~~~d~vV~S 67 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE-TERTAYLRKLGIPIFVPHSAD-------------NWYDPDLVIKT 67 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC-CHHHHHHHHTTCCEESSCCTT-------------SCCCCSEEEEC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC-ChhHHHHHHCCCeEEeeeccc-------------ccCCCCEEEEe
Confidence 46889998888884 5888999999998876654 23333454444 333221111 11248999999
Q ss_pred ccCCCccCc
Q 018550 276 TGLTGTSTT 284 (354)
Q Consensus 276 ~G~~~~~p~ 284 (354)
.+...+.|.
T Consensus 68 sAI~~~npe 76 (89)
T d1j6ua1 68 PAVRDDNPE 76 (89)
T ss_dssp TTCCTTCHH
T ss_pred cCcCCCCHH
Confidence 998844443
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.73 E-value=0.8 Score=33.90 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=30.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
.+++.|||.|..|-..|..|...|.+|..+++.
T Consensus 44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~ 76 (184)
T d1ygya1 44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY 76 (184)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred ceeeeeccccchhHHHHHHhhhccceEEeecCC
Confidence 468999999999999999999999999999874
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=81.61 E-value=0.92 Score=35.54 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=31.8
Q ss_pred CCCCCeEEEEccC-CCHHHHHHHHhccCCEEEEEEecC
Q 018550 194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 194 ~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+.++|.++|.|++ -+|.++|..|++.|.+|.+..|+.
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD 39 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3578989999876 499999999999999999998865
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=81.59 E-value=0.86 Score=29.61 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=47.9
Q ss_pred CCCCCeEEEEccCCCHHHH-HHHHhccCCEEEEEEecCCccccccCCCCC-CeEEecceeEEecCCcEEEccCcEEecCE
Q 018550 194 PFQDQVVILIGHYASGLDI-KRDLAGFAKEVHIASRSVADETHEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADV 271 (354)
Q Consensus 194 ~~~~~~v~ViG~G~~g~e~-a~~l~~~g~~v~~~~r~~~~~~~~~l~~~~-~~~~~~~v~~v~~~~~v~~~~g~~~~~D~ 271 (354)
....+++-+||-|-+|+-. |..|.+.|.+|+-..+... ...+.+.+.+ .++....-.. .-.+|+
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~-~~~~~L~~~Gi~v~~g~~~~~-------------i~~~d~ 70 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG-VVTQRLAQAGAKIYIGHAEEH-------------IEGASV 70 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS-HHHHHHHHTTCEEEESCCGGG-------------GTTCSE
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC-hhhhHHHHCCCeEEECCcccc-------------CCCCCE
Confidence 3466899999999999887 8999999999988766532 2222332222 2222221111 113789
Q ss_pred EEEcccCCCccC
Q 018550 272 IMHCTGLTGTST 283 (354)
Q Consensus 272 vi~a~G~~~~~p 283 (354)
||...+...+.|
T Consensus 71 vV~S~AI~~~np 82 (96)
T d1p3da1 71 VVVSSAIKDDNP 82 (96)
T ss_dssp EEECTTSCTTCH
T ss_pred EEECCCcCCCCH
Confidence 999988874333
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=81.49 E-value=0.88 Score=35.93 Aligned_cols=36 Identities=6% Similarity=0.086 Sum_probs=31.2
Q ss_pred CCCCeEEEEcc-C--CCHHHHHHHHhccCCEEEEEEecC
Q 018550 195 FQDQVVILIGH-Y--ASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 195 ~~~~~v~ViG~-G--~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++|+++|.|+ | -+|..+|..|++.|.+|.+..|.+
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~ 41 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE 41 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36799999996 3 489999999999999999999875
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.35 E-value=0.93 Score=35.56 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=27.2
Q ss_pred CeEEEEcCChH-HHHHHHHHHHcCCcEEEEeeC
Q 018550 3 RHVAVIGAGAA-GLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~a-G~~~a~~l~~~g~~v~lie~~ 34 (354)
|-++|.||+-. |.++|..|+++|.+|++.+++
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~ 43 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCART 43 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 55788887654 899999999999999999975
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=81.28 E-value=0.82 Score=33.52 Aligned_cols=38 Identities=8% Similarity=0.026 Sum_probs=32.5
Q ss_pred CCCCCCeEEEEccCCCHHHHHHHHhccC-CEEEEEEecC
Q 018550 193 NPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSV 230 (354)
Q Consensus 193 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 230 (354)
...++++|+|+|.|.+|+-.++.++..| .+|..+...+
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~ 64 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK 64 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence 3457899999999999999999999998 5788887765
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=81.27 E-value=3 Score=29.03 Aligned_cols=60 Identities=18% Similarity=0.029 Sum_probs=36.0
Q ss_pred HHhccC--CEEEEEEecCC-----------ccccccC-CCCC-CeEEecc--eeEEecCC-cEEEccCcEEecCEEEE
Q 018550 215 DLAGFA--KEVHIASRSVA-----------DETHEKQ-PGYD-NMWLHSM--VERANEDG-TVVFRNGRVVSADVIMH 274 (354)
Q Consensus 215 ~l~~~g--~~v~~~~r~~~-----------~~~~~~l-~~~~-~~~~~~~--v~~v~~~~-~v~~~~g~~~~~D~vi~ 274 (354)
.|.++| .++.++...+. .+.+..+ .+.+ +++.+.. +.++.... .+++.+|+++++|++.+
T Consensus 61 ~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~v 138 (141)
T d1fcda2 61 YLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINL 138 (141)
T ss_dssp HHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEE
T ss_pred HHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEe
Confidence 345555 35777665553 1233333 3344 6666554 55666443 38888999999999876
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=81.21 E-value=0.72 Score=33.64 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=27.5
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~-G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
..|+|.|+ |+.|+++...+...|.+|+.+++.
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~ 61 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASR 61 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEEeccccchhhhhhhhccccccccccccc
Confidence 46888896 999999988888889999988864
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=81.20 E-value=0.67 Score=36.47 Aligned_cols=37 Identities=8% Similarity=0.109 Sum_probs=30.7
Q ss_pred CCCCeEEEEcc-CC--CHHHHHHHHhccCCEEEEEEecCC
Q 018550 195 FQDQVVILIGH-YA--SGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 195 ~~~~~v~ViG~-G~--~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.++|+++|.|+ |. +|..+|..|++.|.+|.+..|+..
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~ 43 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL 43 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH
Confidence 46789999994 43 789999999999999998887653
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=81.10 E-value=1.1 Score=34.98 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=27.6
Q ss_pred CCeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|.++|-||+- .|.+.|..|++.|.+|++.++++
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~ 39 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP 39 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35677777643 48899999999999999999864
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.06 E-value=0.64 Score=39.60 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=30.7
Q ss_pred CCCeEEEEccCCCHHHHHHHHhccCC-EEEEEEecCC
Q 018550 196 QDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVA 231 (354)
Q Consensus 196 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~v~~~~r~~~ 231 (354)
+..+|+|||.|.+|.|++..|+..|. +++++..+.-
T Consensus 36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V 72 (426)
T d1yovb1 36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI 72 (426)
T ss_dssp HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 34679999999999999999999984 6888877653
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.05 E-value=1.7 Score=31.59 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=32.6
Q ss_pred CCCCCCeEEEEccC-CCHHHHHHHHhccCCEEEEEEecC
Q 018550 193 NPFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 193 ~~~~~~~v~ViG~G-~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+.++++++|||-+ .+|.=+|..|.+.|+.|++++...
T Consensus 25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~ 63 (171)
T d1edza1 25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN 63 (171)
T ss_dssp CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccc
Confidence 35689999999965 679999999999999999887654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=80.95 E-value=0.96 Score=35.70 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=26.9
Q ss_pred CeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|.++|.||+- .|.+.|+.|++.|.+|++.+++.
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD 40 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5567777654 58899999999999999999853
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=80.92 E-value=0.46 Score=38.22 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=26.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHc----CC-------cEEEEeeC
Q 018550 3 RHVAVIGAGAAGLVVGHELLRE----GH-------TVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~aG~~~a~~l~~~----g~-------~v~lie~~ 34 (354)
.+|+|.|+|.||+..|..|... |. ++.++|+.
T Consensus 26 ~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~ 68 (308)
T d1o0sa1 26 EKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID 68 (308)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETT
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCC
Confidence 5799999999999999998754 42 59999984
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=80.92 E-value=0.84 Score=33.34 Aligned_cols=37 Identities=16% Similarity=0.032 Sum_probs=29.6
Q ss_pred CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEec
Q 018550 193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229 (354)
Q Consensus 193 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~ 229 (354)
...++++|+|+|+|.+|.-+++.+...|.++.++...
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~ 61 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence 4457899999999999999999998888765555443
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.76 E-value=0.94 Score=35.42 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=30.2
Q ss_pred CCCCeEEEEccC---CCHHHHHHHHhccCCEEEEEEecC
Q 018550 195 FQDQVVILIGHY---ASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 195 ~~~~~v~ViG~G---~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++|.++|.|++ -+|..+|..|++.|.+|.+..|.+
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~ 44 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence 467999999964 489999999999999998777654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=80.66 E-value=1 Score=35.23 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=28.8
Q ss_pred CCeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|.++|.||+- .|.+.|..|++.|.+|++.+++.
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLD 39 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46788888875 58899999999999999999853
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.59 E-value=0.59 Score=33.39 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=28.8
Q ss_pred eEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 199 ~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
+|.+||.|.+|--++..|.+.+.++++..|+.
T Consensus 2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~ 33 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL 33 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence 58999999999999999999999999887764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.51 E-value=0.76 Score=36.07 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=27.4
Q ss_pred CeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeC
Q 018550 3 RHVAVIGAGA-AGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 3 ~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~ 34 (354)
|.++|-||+- .|.+.|+.|++.|.+|++.+++
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~ 38 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADIN 38 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 6678888854 4889999999999999999985
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=80.38 E-value=0.81 Score=31.05 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=27.2
Q ss_pred CCeEEEEccCC-----------CHHHHHHHHhccCCEEEEEEecC
Q 018550 197 DQVVILIGHYA-----------SGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 197 ~~~v~ViG~G~-----------~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.++|+|+|+|+ ++.+++..|++.|.++.++...+
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP 48 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP 48 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence 47899999985 45667888899999988886665
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=80.36 E-value=1 Score=35.28 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=28.9
Q ss_pred CCeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|.++|.||.- .|.++|..|++.|.+|++.++++
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~ 40 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE 40 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46789999754 58899999999999999999863
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=80.29 E-value=0.57 Score=33.60 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=25.6
Q ss_pred eEEEEcCChHHHHHHHHHHHcCCcEEEEeeC
Q 018550 4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34 (354)
Q Consensus 4 ~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~ 34 (354)
+|.+||-|..|...|..|.+.|+.+ ++.+.
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~ 31 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRT 31 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSS
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCC
Confidence 6899999999999999999988865 45553
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.23 E-value=1.1 Score=34.65 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=31.6
Q ss_pred CCCCeEEEEccC-CCHHHHHHHHhccCCEEEEEEecCC
Q 018550 195 FQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 195 ~~~~~v~ViG~G-~~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.++|.++|.|++ -+|..+|..|++.|.+|.++.|+..
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS 40 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence 468888888875 4999999999999999999998764
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=80.20 E-value=0.81 Score=35.75 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=30.7
Q ss_pred CCCCeEEEEccCC---CHHHHHHHHhccCCEEEEEEecCC
Q 018550 195 FQDQVVILIGHYA---SGLDIKRDLAGFAKEVHIASRSVA 231 (354)
Q Consensus 195 ~~~~~v~ViG~G~---~g~e~a~~l~~~g~~v~~~~r~~~ 231 (354)
.++|.++|.|++- +|..+|..|++.|.+|.+..|++.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~ 42 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK 42 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3678889988754 678999999999999999988753
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.18 E-value=1.1 Score=34.77 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=27.9
Q ss_pred CeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 3 RHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 3 ~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
|.++|-||+- .|.+.|..|++.|.+|++.+++.
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEE 39 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5677778754 69999999999999999999853
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=80.17 E-value=1.2 Score=33.10 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=30.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.++|.|||.|-.|...|..|...|.++..+++..
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~ 80 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHR 80 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred ccceEEeecccchHHHHHHHHhhccccccccccc
Confidence 3789999999999999999999999999999753
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=80.09 E-value=1.1 Score=34.71 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=29.2
Q ss_pred CCeEEEEcCCh-HHHHHHHHHHHcCCcEEEEeeCC
Q 018550 2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE 35 (354)
Q Consensus 2 ~~~vvIIG~G~-aG~~~a~~l~~~g~~v~lie~~~ 35 (354)
.|.++|.||+- .|.+.|..|++.|++|++.+++.
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREE 39 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46788888876 69999999999999999999864
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=80.09 E-value=1.1 Score=33.20 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEccCCCHHHHHHHHhccCCEEEEEEecC
Q 018550 193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230 (354)
Q Consensus 193 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~v~~~~r~~ 230 (354)
.+..++++.|||.|.+|.++|..+...|.+|..+.+..
T Consensus 40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred eeccccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence 34578999999999999999999999999998888754
|