Citrus Sinensis ID: 018552

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTDTSTGLSRSMAMTMR
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHcccc
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccEEHcHEEEEEccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHcc
mkvfmpnqdncdRISQllgscepaksWQMLYLYTVLYITgfgaagirpcvssfgadqfdersKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMlffigtplyrhrlpggsplTRVAQVLVAAFRKRHaafssseliglyevpgkhsaikgsgkiahtddfRCLDKAALELkedvinpspwklctvTQVEEVKTLVrlvpipacTIMLNVILTEFLTLSVQQAYTmnthmghprgasqlQRVGIGLAVSILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSvtgnpkkgqpnwlaqnintdtstglsrsMAMTMR
mkvfmpnqdncDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELkedvinpspwklctvtQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTgnpkkgqpnwlaqnintdtstglsrsmamtmr
MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGLLEFLYEEAPDAMKSIgsayaalagglgcfaasILNSIIKSVTGNPKKGQPNWLAQNINTDTSTGLSRSMAMTMR
************RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT********************************
MKVFMPN******************SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS****THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELI********************TDDFRCLDKAALE************LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTDTSTGLSRSMAMTMR
********DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTDTSTGLSRSMAMTMR
****MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHS***GSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPK***PNWL*********************
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTDTSTGLSRSMAMTMR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query354 2.2.26 [Sep-21-2011]
Q9LYR6624 Probable peptide/nitrate yes no 0.951 0.540 0.646 1e-151
Q9M390570 Peptide transporter PTR1 no no 0.889 0.552 0.360 5e-67
Q93Z20590 Probable peptide/nitrate no no 0.887 0.532 0.370 5e-64
P46032585 Peptide transporter PTR2 no no 0.892 0.540 0.353 8e-63
Q9LFB8570 Peptide transporter PTR5 no no 0.855 0.531 0.357 5e-61
Q84WG0545 Probable peptide/nitrate no no 0.802 0.521 0.325 4e-49
Q9FNL7582 Peptide transporter PTR3- no no 0.878 0.534 0.297 4e-48
Q9FNL8586 Peptide transporter PTR3- no no 0.878 0.530 0.289 8e-47
Q9SZY4577 Nitrate transporter 1.4 O no no 0.875 0.537 0.326 9e-46
Q9LQL2614 Nitrate transporter 1.5 O no no 0.887 0.511 0.285 3e-45
>sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1 Back     alignment and function desciption
 Score =  534 bits (1375), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 274/424 (64%), Positives = 308/424 (72%), Gaps = 87/424 (20%)

Query: 1   MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
           +K+F+P+Q NC ++S LLG+CE AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE
Sbjct: 159 LKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218

Query: 61  RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
           +SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF 
Sbjct: 219 KSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFA 278

Query: 121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
           GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H+
Sbjct: 279 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHS 338

Query: 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
           +DF  LDKAALELKED + PSPWKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTL
Sbjct: 339 NDFIWLDKAALELKEDGLEPSPWKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTL 398

Query: 241 SVQQAYTMNTHM-------------------------------------GHPRGASQLQR 263
           SVQQAYT+NTH+                                     G+P GASQLQR
Sbjct: 399 SVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQR 458

Query: 264 VGIGLAVSILSVIWA--------------------------------------------- 278
           VGIGLAVSI+SV WA                                             
Sbjct: 459 VGIGLAVSIISVAWAGLFENYRRHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVF 518

Query: 279 ---GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 335
              GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA+ILN+I+K+ T +      +WL+Q
Sbjct: 519 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQ 576

Query: 336 NINT 339
           NINT
Sbjct: 577 NINT 580

Arabidopsis thaliana (taxid: 3702)
>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 Back     alignment and function description
>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 Back     alignment and function description
>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 Back     alignment and function description
>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 Back     alignment and function description
>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1 Back     alignment and function description
>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1 Back     alignment and function description
>sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query354
224053581 638 predicted protein [Populus trichocarpa] 0.957 0.531 0.695 1e-165
296085541 606 unnamed protein product [Vitis vinifera] 0.957 0.559 0.723 1e-162
449468910 637 PREDICTED: probable peptide/nitrate tran 0.957 0.532 0.667 1e-159
225425292 640 PREDICTED: probable peptide/nitrate tran 0.957 0.529 0.665 1e-158
147866216 626 hypothetical protein VITISV_008303 [Viti 0.957 0.541 0.665 1e-158
356569101 631 PREDICTED: probable peptide/nitrate tran 0.949 0.532 0.672 1e-158
357501519 638 Peptide transporter-like protein [Medica 0.957 0.531 0.650 1e-155
297811451 625 proton-dependent oligopeptide transport 0.951 0.539 0.650 1e-150
147771745 612 hypothetical protein VITISV_040927 [Viti 0.929 0.537 0.641 1e-149
15240621 624 putative peptide/nitrate transporter [Ar 0.951 0.540 0.646 1e-149
>gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/424 (69%), Positives = 324/424 (76%), Gaps = 85/424 (20%)

Query: 1   MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
           M +FMP+Q  CD++S LLG+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDE
Sbjct: 163 MNIFMPDQGQCDQLSLLLGNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDE 222

Query: 61  RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
           R ++YK+HLDRFFNFFYLSVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFI
Sbjct: 223 RGENYKSHLDRFFNFFYLSVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFI 282

Query: 121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
           GTPLYRHRLPGGSPLTRVAQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHT
Sbjct: 283 GTPLYRHRLPGGSPLTRVAQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHT 342

Query: 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
           DDFRCLDKAAL+LKED ++PSPW+LCTVTQVEEVK L++LVPIPACTIMLN+ILTE+LTL
Sbjct: 343 DDFRCLDKAALQLKEDGVDPSPWRLCTVTQVEEVKILIKLVPIPACTIMLNLILTEYLTL 402

Query: 241 SVQQAYTMNTHM-------------------------------------GHPRGASQLQR 263
           SVQQAYT+NTH+                                     GHPRGASQLQR
Sbjct: 403 SVQQAYTLNTHLGHLKLPVTSMPVFPCLSIFLILSLYYSVFVPIFRRITGHPRGASQLQR 462

Query: 264 VGIGLAVSILSVIWA--------------------------------------------- 278
           VGIGLA SILSV WA                                             
Sbjct: 463 VGIGLAFSILSVAWAAIFERYRRKYAIEHGYEFSFLTPMPNLSAYWLLIQYCLIGIAEVF 522

Query: 279 ---GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 335
              GLLEFLYEEAPDAMKSIGSAYAALAGG+GCFAASILNSI+KSVTGNP K Q +WL+Q
Sbjct: 523 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGIGCFAASILNSIVKSVTGNPDKRQQSWLSQ 582

Query: 336 NINT 339
           NINT
Sbjct: 583 NINT 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max] Back     alignment and taxonomy information
>gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query354
TAIR|locus:2181655 624 AT5G13400 [Arabidopsis thalian 0.785 0.445 0.763 2.4e-125
TAIR|locus:2080235 570 PTR1 "peptide transporter 1" [ 0.655 0.407 0.455 9.5e-69
TAIR|locus:2041125 585 PTR2 "peptide transporter 2" [ 0.742 0.449 0.419 5.4e-59
TAIR|locus:2018032590 PTR6 "peptide transporter 6" [ 0.641 0.384 0.489 1.8e-58
TAIR|locus:2150124 570 PTR5 "peptide transporter 5" [ 0.734 0.456 0.406 1.6e-55
TAIR|locus:2025886 591 AT1G59740 [Arabidopsis thalian 0.655 0.392 0.375 1.1e-48
TAIR|locus:2043803 577 AT2G26690 [Arabidopsis thalian 0.641 0.393 0.402 2.9e-48
TAIR|locus:2026884 596 AT1G68570 [Arabidopsis thalian 0.652 0.387 0.415 1.8e-46
TAIR|locus:2205769 567 AT1G27040 [Arabidopsis thalian 0.627 0.391 0.371 4.4e-46
TAIR|locus:2161428 586 AT5G46040 [Arabidopsis thalian 0.644 0.389 0.347 2.2e-45
TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1110 (395.8 bits), Expect = 2.4e-125, Sum P(2) = 2.4e-125
 Identities = 213/279 (76%), Positives = 244/279 (87%)

Query:     1 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 60
             +K+F+P+Q NC ++S LLG+CE AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE
Sbjct:   159 LKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218

Query:    61 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 120
             +SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF 
Sbjct:   219 KSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFA 278

Query:   121 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180
             GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H+
Sbjct:   279 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHS 338

Query:   181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 240
             +DF  LDKAALELKED + PSPWKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTL
Sbjct:   339 NDFIWLDKAALELKEDGLEPSPWKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTL 398

Query:   241 SVQQAYTMNTHMGHPRGASQLQRVGIGLAVS-ILSVIWA 278
             SVQQAYT+NTH+ H +       V  GL++  ILS+ ++
Sbjct:   399 SVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYS 437
GO:0005215 "transporter activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006857 "oligopeptide transport" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
pfam00854372 pfam00854, PTR2, POT family 1e-43
TIGR00926 641 TIGR00926, 2A1704, Peptide:H+ symporter (also tran 2e-11
COG3104498 COG3104, PTR2, Dipeptide/tripeptide permease [Amin 4e-09
TIGR00924475 TIGR00924, yjdL_sub1_fam, amino acid/peptide trans 6e-05
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 6e-04
>gnl|CDD|216153 pfam00854, PTR2, POT family Back     alignment and domain information 
 Score =  154 bits (391), Expect = 1e-43
 Identities = 70/263 (26%), Positives = 120/263 (45%), Gaps = 20/263 (7%)

Query: 28  QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 87
           Q+   Y  LY+   G  GI+P VS+FGADQFDE     +   D FF++FY S+  G+++A
Sbjct: 31  QVALFYIGLYLIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIA 87

Query: 88  FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAA 145
             +  Y+Q   G+   FG  A+ M ++ ++F +G+  Y+ + P GGSP T  +A ++ AA
Sbjct: 88  TIITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAA 147

Query: 146 FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKL 205
            + R           LY    K++    S    HT        A + +            
Sbjct: 148 GKNRKLQLPKDS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LF 197

Query: 206 CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG--HPRGASQLQ- 262
                V  ++ ++ ++PI A  I+ + + T+  TL V+Q  TM+  +        +  Q 
Sbjct: 198 DQQGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQS 257

Query: 263 --RVGIGLAVSILSVIWAGLLEF 283
              + + + + IL  +   LL  
Sbjct: 258 FNPLAVLILLPILDFLVYPLLRL 280

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372
>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 354
KOG1237571 consensus H+/oligopeptide symporter [Amino acid tr 100.0
COG3104498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 100.0
PF00854372 PTR2: POT family; InterPro: IPR000109 This entry r 100.0
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 100.0
PRK15462493 dipeptide/tripeptide permease D; Provisional 99.97
PRK10207489 dipeptide/tripeptide permease B; Provisional 99.95
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.94
PRK09584500 tppB putative tripeptide transporter permease; Rev 99.92
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 98.45
TIGR00900365 2A0121 H+ Antiporter protein. 98.36
TIGR00893399 2A0114 d-galactonate transporter. 98.25
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 98.15
PRK11646400 multidrug resistance protein MdtH; Provisional 98.12
PRK10489417 enterobactin exporter EntS; Provisional 98.09
TIGR00895398 2A0115 benzoate transport. 98.05
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 97.98
PRK14995495 methyl viologen resistance protein SmvA; Provision 97.95
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 97.93
PRK03545390 putative arabinose transporter; Provisional 97.87
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 97.85
PRK10054395 putative transporter; Provisional 97.83
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 97.81
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 97.74
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 97.73
KOG1330493 consensus Sugar transporter/spinster transmembrane 97.72
PRK15402406 multidrug efflux system translocase MdfA; Provisio 97.72
TIGR00902382 2A0127 phenyl proprionate permease family protein. 97.7
TIGR00901356 2A0125 AmpG-related permease. 97.66
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 97.66
PRK10504471 putative transporter; Provisional 97.65
TIGR00881379 2A0104 phosphoglycerate transporter family protein 97.64
TIGR00891405 2A0112 putative sialic acid transporter. 97.63
PRK09874408 drug efflux system protein MdtG; Provisional 97.63
PRK12307426 putative sialic acid transporter; Provisional 97.61
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 97.5
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 97.5
TIGR00788468 fbt folate/biopterin transporter. The only functio 97.45
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 97.43
PRK05122399 major facilitator superfamily transporter; Provisi 97.41
PRK10473392 multidrug efflux system protein MdtL; Provisional 97.39
PRK05122399 major facilitator superfamily transporter; Provisi 97.38
PRK11652394 emrD multidrug resistance protein D; Provisional 97.37
TIGR00880141 2_A_01_02 Multidrug resistance protein. 97.31
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 97.31
TIGR00898505 2A0119 cation transport protein. 97.3
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 97.26
TIGR00892455 2A0113 monocarboxylate transporter 1. 97.26
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 97.21
PRK15011393 sugar efflux transporter B; Provisional 97.19
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 97.14
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 97.14
PRK12382392 putative transporter; Provisional 97.12
PRK15403413 multidrug efflux system protein MdtM; Provisional 97.11
PRK11902402 ampG muropeptide transporter; Reviewed 97.06
PRK09705393 cynX putative cyanate transporter; Provisional 97.04
PRK11195393 lysophospholipid transporter LplT; Provisional 96.99
PRK10213394 nepI ribonucleoside transporter; Reviewed 96.97
PRK11010491 ampG muropeptide transporter; Validated 96.92
PRK12382392 putative transporter; Provisional 96.89
TIGR00896355 CynX cyanate transporter. This family of proteins 96.86
PRK11663434 regulatory protein UhpC; Provisional 96.8
PRK09874408 drug efflux system protein MdtG; Provisional 96.77
TIGR00805 633 oat sodium-independent organic anion transporter. 96.69
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 96.65
PRK10091382 MFS transport protein AraJ; Provisional 96.56
PRK03633381 putative MFS family transporter protein; Provision 96.56
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 96.48
PRK11043401 putative transporter; Provisional 96.45
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 96.43
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 96.38
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 96.35
PRK10406432 alpha-ketoglutarate transporter; Provisional 96.34
TIGR00889418 2A0110 nucleoside transporter. This family of prot 96.31
PRK03893496 putative sialic acid transporter; Provisional 96.18
PRK10489417 enterobactin exporter EntS; Provisional 96.12
PRK03699394 putative transporter; Provisional 96.06
TIGR00893399 2A0114 d-galactonate transporter. 95.99
KOG2532466 consensus Permease of the major facilitator superf 95.94
TIGR00897402 2A0118 polyol permease family. This family of prot 95.89
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 95.89
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 95.89
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 95.89
PRK03633381 putative MFS family transporter protein; Provision 95.87
TIGR01272310 gluP glucose/galactose transporter. Disruption of 95.82
PRK10077479 xylE D-xylose transporter XylE; Provisional 95.72
KOG3764464 consensus Vesicular amine transporter [Intracellul 95.61
TIGR00892455 2A0113 monocarboxylate transporter 1. 95.51
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 95.36
PRK10642490 proline/glycine betaine transporter; Provisional 95.35
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 95.33
PRK03545390 putative arabinose transporter; Provisional 95.27
PRK09705393 cynX putative cyanate transporter; Provisional 95.11
KOG1237 571 consensus H+/oligopeptide symporter [Amino acid tr 95.11
PRK09528420 lacY galactoside permease; Reviewed 95.05
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 95.02
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 94.98
PRK15011393 sugar efflux transporter B; Provisional 94.8
PRK09528420 lacY galactoside permease; Reviewed 94.79
PF13347428 MFS_2: MFS/sugar transport protein 94.74
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 94.69
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 94.6
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 94.41
PRK03699394 putative transporter; Provisional 94.23
PRK09952438 shikimate transporter; Provisional 94.2
PRK15075434 citrate-proton symporter; Provisional 93.93
PRK09669444 putative symporter YagG; Provisional 93.85
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 93.69
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 93.62
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 93.59
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 93.59
TIGR00891405 2A0112 putative sialic acid transporter. 93.55
TIGR01299 742 synapt_SV2 synaptic vesicle protein SV2. This mode 93.46
PRK11663434 regulatory protein UhpC; Provisional 93.33
PRK03893496 putative sialic acid transporter; Provisional 93.23
PRK09848448 glucuronide transporter; Provisional 92.9
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 92.76
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 92.61
PRK10133438 L-fucose transporter; Provisional 92.54
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 92.46
PRK11646400 multidrug resistance protein MdtH; Provisional 92.43
PLN00028476 nitrate transmembrane transporter; Provisional 92.31
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 92.24
PRK11010491 ampG muropeptide transporter; Validated 92.2
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 92.19
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 92.02
KOG3626 735 consensus Organic anion transporter [Secondary met 91.81
TIGR00897402 2A0118 polyol permease family. This family of prot 91.81
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 91.72
PRK10054395 putative transporter; Provisional 91.45
PRK10213394 nepI ribonucleoside transporter; Reviewed 91.44
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 91.11
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 90.94
PRK11462460 putative transporter; Provisional 90.84
TIGR00902382 2A0127 phenyl proprionate permease family protein. 90.61
PRK09669444 putative symporter YagG; Provisional 90.55
KOG2533495 consensus Permease of the major facilitator superf 90.47
PRK09952438 shikimate transporter; Provisional 90.22
COG2807395 CynX Cyanate permease [Inorganic ion transport and 90.08
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 89.94
PRK10077479 xylE D-xylose transporter XylE; Provisional 89.55
TIGR00881379 2A0104 phosphoglycerate transporter family protein 89.38
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 89.25
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 89.19
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 89.17
PRK09848448 glucuronide transporter; Provisional 88.75
TIGR00900365 2A0121 H+ Antiporter protein. 88.11
PRK11902402 ampG muropeptide transporter; Reviewed 87.64
PF13347428 MFS_2: MFS/sugar transport protein 87.19
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 86.88
PRK10642490 proline/glycine betaine transporter; Provisional 86.65
TIGR01272310 gluP glucose/galactose transporter. Disruption of 86.34
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 85.93
PRK15075434 citrate-proton symporter; Provisional 85.91
PRK11652394 emrD multidrug resistance protein D; Provisional 85.48
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 84.81
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 84.75
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 84.62
PRK10504471 putative transporter; Provisional 84.25
PRK10091382 MFS transport protein AraJ; Provisional 83.93
PRK10429473 melibiose:sodium symporter; Provisional 83.91
TIGR00898505 2A0119 cation transport protein. 83.89
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 83.65
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 83.44
PF1400789 YtpI: YtpI-like protein 83.43
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 82.89
PRK12307426 putative sialic acid transporter; Provisional 82.71
COG0738422 FucP Fucose permease [Carbohydrate transport and m 82.45
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 82.27
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 81.97
PRK10429473 melibiose:sodium symporter; Provisional 81.15
PRK15402406 multidrug efflux system translocase MdfA; Provisio 81.03
PLN00028476 nitrate transmembrane transporter; Provisional 80.95
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-61  Score=490.69  Aligned_cols=335  Identities=42%  Similarity=0.666  Sum_probs=295.7

Q ss_pred             CCCCCCcccccCCCCCcCCCcchHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 018552            6 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI   85 (354)
Q Consensus         6 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGsl   85 (354)
                      .+|.+| .-.-.+..|+.|+..+...||.+|+++++|+|++|||+.++++||||+.+++++..+.++|+|||+.+|+|++
T Consensus       130 l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l  208 (571)
T KOG1237|consen  130 LLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGAL  208 (571)
T ss_pred             cCCccc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHH
Confidence            355566 2222367899999999999999999999999999999999999999999998888899999999999999999


Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhcccceeecCCCCCchhHHHHHHHHHHHhcccccCCcccccccccC
Q 018552           86 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVP  165 (354)
Q Consensus        86 ia~~~~~~i~~~~g~~~gF~i~~v~m~ial~~f~~g~~~y~~~~p~gspl~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~  165 (354)
                      ++.++.+|+|++.||.+||++++++|++++++|+.|++.|++++|.|+|++.+.+|+++++++++...+.+.+. + +. 
T Consensus       209 ~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~-~~-  285 (571)
T KOG1237|consen  209 LAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L-YY-  285 (571)
T ss_pred             HHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c-cc-
Confidence            99999999999999999999999999999999999999999999999999999999999999988776655332 2 11 


Q ss_pred             CCcccccCCcccccCCchhhhhHhHhhhhccc---CCCCCcccccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhH
Q 018552          166 GKHSAIKGSGKIAHTDDFRCLDKAALELKEDV---INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV  242 (354)
Q Consensus       166 ~~~~~~~~~~~i~~~~~~~~l~~a~~~~~~~~---~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~  242 (354)
                          ...+.....+++.++++|+|+.+...+.   ...+||++|+++||||+|+++|++|+|++.++||+++.|+.|.++
T Consensus       286 ----~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v  361 (571)
T KOG1237|consen  286 ----DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFV  361 (571)
T ss_pred             ----cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhhee
Confidence                0111123345778899999998754321   125789999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccc--------------------------------------ccCCCCCchHHHHHHHHHHHHHHHHH------
Q 018552          243 QQAYTMNTHM--------------------------------------GHPRGASQLQRVGIGLAVSILSVIWA------  278 (354)
Q Consensus       243 lqa~~md~~i--------------------------------------~~~~~~s~l~ki~iG~~l~~ls~~~a------  278 (354)
                      +||.+|||++                                      +++++++++|||++|++++.++|.++      
T Consensus       362 ~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~k  441 (571)
T KOG1237|consen  362 LQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAK  441 (571)
T ss_pred             hhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHH
Confidence            9999999986                                      23356899999999999999999887      


Q ss_pred             ------------------------------------HHHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 018552          279 ------------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT  322 (354)
Q Consensus       279 ------------------------------------~~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~~~t  322 (354)
                                                          |++||+|+|+|++|||+++++|+++.|+|++++.++++++++.|
T Consensus       442 rl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t  521 (571)
T KOG1237|consen  442 RLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST  521 (571)
T ss_pred             HhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                                                78999999999999999999999999999999999999999988


Q ss_pred             cCCCCCCCCCCC-CCCCcCcchHHHHHHhhc
Q 018552          323 GNPKKGQPNWLA-QNINTDTSTGLSRSMAMT  352 (354)
Q Consensus       323 ~~~~~~~~~W~~-~~ln~~~ld~~~~~~~~~  352 (354)
                      +  +  ..+|++ +|||++|+|||||++|.+
T Consensus       522 ~--~--~~~w~~~~~ln~~~ld~Fy~lla~~  548 (571)
T KOG1237|consen  522 G--K--AAEWLGFANLNKGRLDYFYWLLAVY  548 (571)
T ss_pred             C--C--CcccCChhHhhhhHHHHHHHHHHHH
Confidence            5  3  458999 999999999999999865

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PF14007 YtpI: YtpI-like protein Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
2xut_A524 Crystal Structure Of A Proton Dependent Oligopeptid 1e-08
>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 Back     alignment and structure 
Iteration: 1

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 32  LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 91
            YT L++   G+ GI+P VSSF  DQFD+ +K       + F+ FY ++  G+  A   +
Sbjct: 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFASLSM 168
Query: 92  VYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP 130
             +    G   AFG   + M ++ + F++G   Y H  P
Sbjct: 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
2xut_A524 Proton/peptide symporter family protein; transport 1e-57
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 1e-07
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 Back     alignment and structure
 Score =  194 bits (494), Expect = 1e-57
 Identities = 71/383 (18%), Positives = 129/383 (33%), Gaps = 81/383 (21%)

Query: 28  QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 87
            +   YT L++   G+ GI+P VSSF  DQFD+   + K+   + F+ FY ++  G+  A
Sbjct: 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SN-KSLAQKAFDMFYFTINFGSFFA 164

Query: 88  FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 147
              +  +    G   AFG   + M ++ + F++G   Y H  P          V+ +A  
Sbjct: 165 SLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALL 224

Query: 148 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LELKEDVINPS 201
            +     +  L  +  + G  SA      I        L  A       +     +    
Sbjct: 225 TKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLER 282

Query: 202 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHP------ 255
             K      V+ V++++R++ + A       +  +  +  + QA  M             
Sbjct: 283 ARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQA 342

Query: 256 -------------------------RGASQLQRVGIGLAVSILSVIWAGL---------- 280
                                       + L+++G G+A++ LS I  G           
Sbjct: 343 LNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSA 402

Query: 281 ------------------------LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 316
                                   LEF Y +AP AMK    ++  L+  +G     + N 
Sbjct: 403 LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANV 462

Query: 317 IIKSVTGNPKKGQPNWLAQNINT 339
            +KS T          +   ++ 
Sbjct: 463 SVKSPTVT-----EQIVQTGMSV 480
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query354
2xut_A524 Proton/peptide symporter family protein; transport 99.56
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 99.29
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 97.93
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 97.73
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 97.54
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 96.72
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 96.19
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 95.42
2xut_A524 Proton/peptide symporter family protein; transport 95.01
2cfq_A417 Lactose permease; transport, transport mechanism, 94.48
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 92.36
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 91.13
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 85.64
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
Probab=99.56  E-value=4.9e-15  Score=147.88  Aligned_cols=308  Identities=22%  Similarity=0.289  Sum_probs=179.4

Q ss_pred             hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 018552           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL  107 (354)
Q Consensus        28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~~g~~~gF~i~  107 (354)
                      +.+.++++..+.++|.|+..|+..++++|.+++++.   .+..+.|++++.+.++|..+++.+.+++.+..||++.|.+.
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~  184 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP  184 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            567788899999999999999999999999986543   23578899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccceeecCCCCCchhHHHHHHHHHHHhcccccCCcccccccccCCCcccccCCcccccCCchhhhh
Q 018552          108 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD  187 (354)
Q Consensus       108 ~v~m~ial~~f~~g~~~y~~~~p~gspl~~~~~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~l~  187 (354)
                      ++..+++.+.++..++.+.+.+|++++..+..+.+..+.+++..+.+ +... +.+.........   .+.+......+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~  259 (524)
T 2xut_A          185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGL-VLALIGGVSAAY---ALVNIPTLGIVA  259 (524)
T ss_dssp             HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHH-HHHHHHHHHHHH---TGGGTTTTCSSH
T ss_pred             HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccch-hhhhhhhhhhhh---hhcccchhhhhh
Confidence            99988888877766665544444444333333333333332211000 0000 000000000000   000000000000


Q ss_pred             HhHhhhhc--ccCCCCCc-------ccccchhHhHHHHhHhhhhhhhhHHHHHHHHhccchhhHhhhhhhccc----c--
Q 018552          188 KAALELKE--DVINPSPW-------KLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH----M--  252 (354)
Q Consensus       188 ~a~~~~~~--~~~~~~~~-------~~~~~~~ve~~k~~~~~l~l~~~~i~fw~~~~Q~~t~~~lqa~~md~~----i--  252 (354)
                      .+......  +.....+|       +.+++.+.++.|+++..+++++...++|..+.|..+.+..++.+++.+    .  
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (524)
T 2xut_A          260 GLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAM  339 (524)
T ss_dssp             HHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHH
T ss_pred             hhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHH
Confidence            00000000  00001222       112233456677788888888888888998888888777776655431    0  


Q ss_pred             -------------------------ccCCCCCchHHHHHHHHHHHHHHHHH-----------------------------
Q 018552          253 -------------------------GHPRGASQLQRVGIGLAVSILSVIWA-----------------------------  278 (354)
Q Consensus       253 -------------------------~~~~~~s~l~ki~iG~~l~~ls~~~a-----------------------------  278 (354)
                                               ++++.+++.+++.+|+++.+++++..                             
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  419 (524)
T 2xut_A          340 MQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGE  419 (524)
T ss_dssp             HHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHH
Confidence                                     11223556677888888777766432                             


Q ss_pred             -----HHHhHhhccCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCC-CCCcCcchHHHHHHhh
Q 018552          279 -----GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTDTSTGLSRSMAM  351 (354)
Q Consensus       279 -----~~lE~~~~~aP~~m~s~~~g~~~l~~~iG~~l~~~l~~~~~~~t~~~~~~~~~W~~~-~ln~~~ld~~~~~~~~  351 (354)
                           ...++..+.+|+++|+.++|++.....+|+.++..+...+...+.      .+|.++ ++|.+  .+.||+.++
T Consensus       420 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~  490 (524)
T 2xut_A          420 VLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV------TEQIVQTGMSVT--AFQMFFFAG  490 (524)
T ss_dssp             HHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc------cccccccccccc--ccHHHHHHH
Confidence                 122346678999999999999999999999999999887754332      246543 33332  233665554
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query354
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 97.55
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 96.74
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 96.34
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 95.59
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.0006  Score=62.56  Aligned_cols=86  Identities=12%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHHhccCcccchhhhhhhcCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchHHHHHH
Q 018552           28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA  106 (354)
Q Consensus        28 ~~~~~~~gL~lia~GtG~~K~nv~~~~~dqy~~~d~~~~~~~~s~F~~fY~~iNiGslia~~~~~~i~~~-~g~~~gF~i  106 (354)
                      +...++++..+.++|.|..-|...++++|.++++      +|...++++..+.++|..+++.+.+++.+. .+|++.|.+
T Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~  188 (447)
T d1pw4a_         115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM  188 (447)
T ss_dssp             SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence            4556777788889999999999999999999743      367889999999999999999888776655 479999888


Q ss_pred             HHHHHHHHHHHHH
Q 018552          107 LAIAMGISNMLFF  119 (354)
Q Consensus       107 ~~v~m~ial~~f~  119 (354)
                      .++..++..++.+
T Consensus       189 ~~~~~~~~~~~~~  201 (447)
T d1pw4a_         189 PAFCAILVALFAF  201 (447)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHH
Confidence            8776655444433
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure