Citrus Sinensis ID: 018559

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAALEPHMPQDSSATSNNTHPFSKTGNSFSNERRSLDFSNQAASNNNLRLQQQGSSYASSTENISRLLEGWMRSSPKTSSNSSSALLIKGNGNIFDNRSIENSIGTYRPKEEQEGGGSGGGGGGGDLISNEEFISILSFEQNLNNVTWDKASTGDSSAKGSSTQDSANNEDQSTKVNNNNNDNNDIIANAEKKQRSDQNIHNPPLSFLEKWLLDESTGQVEEINQIMELSDSMF
ccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHHcccccc
cccccccHccccccccccHHHHHHHHHHHHHccccccccccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHHHHccccccccccccccHcccccccccccccHHccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccHHHHHHHHHHHHHcHHHHHHHHHHcccccc
mgrppccdkvgikkgpwtpeEDIILVSYIQehgpgnwrsvptntgllrcskscRLRWtnylrpgikrgnftpheeGMIIHLQALLGNKWAAIASylpqrtdndikNYWNTHLKKKLKKFQsaalephmpqdssatsnnthpfsktgnsfsnerrsldfsnqaasnnnlrlqqqgssyasSTENISRLLEGwmrsspktssnsssallikgngnifdnrsiensigtyrpkeeqegggsgggggggdlisnEEFISILSFEQNLNnvtwdkastgdssakgsstqdsannedqstkvnnnnndnndIIANAEkkqrsdqnihnpplsfLEKWLLDESTGQVEEINQIMELSDSMF
mgrppccdkvgikkgpwtpeEDIILVSYIQehgpgnwrsvptntgLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAALEPhmpqdssatsnnthpfsKTGNSFSNERRSLDFSNQAASnnnlrlqqqgssyaSSTENISRLLEGWMRSspktssnsssallikgngnifdnRSIENSIGTYRPKEEQEGGGSGGGGGGGDLISNEEFISILSFEQNLNNVTWDKAStgdssakgsstqdsannedqstkvnnnnndnNDIIANaekkqrsdqnihNPPLSFLEKWLLDESTGQVEEINQIMELSDSMF
MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAALEPHMPQDSSATSNNTHPFSKTGNSFSNERRSLDFSNQAASNNNLRLQQQGSSYASSTENISRLLEGWMRsspktssnsssALLIKGNGNIFDNRSIENSIGTYRPKEEQEgggsgggggggDLISNEEFISILSFEQNLNNVTWDKASTGDSSAKGSSTQDSANNEDQSTKVnnnnndnndiianaEKKQRSDQNIHNPPLSFLEKWLLDESTGQVEEINQIMELSDSMF
*****CCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKK*****************************************************************************************************************************************FISILSFEQNLNNVTW**********************************************************FLEKWLLD********************
*GRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKK********************************************************************************************************************************************SILSFEQNL**************************************************************SFLEKWLLDESTGQVEEINQIMELSDS**
MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLK**********************HPFSKTGNSFSNERRSLDFSNQAASNNNLRLQ***********NISRLLEGWM***********SALLIKGNGNIFDNRSIENSIGTYR*************GGGGDLISNEEFISILSFEQNLNNVTWDKA*********************STKVNNNNNDNNDIIANAEKKQRSDQNIHNPPLSFLEKWLLDESTGQVEEINQIMELSDSMF
***PPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAA***************************************************************L*EGWM********************************************************************************************************************************HNPPLSFLEKWLLDESTGQVEEINQIMELSDSMF
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MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAALEPHMPQDSSATSNNTHPFSKTGNSFSNERRSLDFSNQAASNNNLRLQQQGSSYASSTENISRLLEGWMRSSPKTSSNSSSALLIKGNGNIFDNRSIENSIGTYRPKEEQEGGGSGGGGGGGDLISNEEFISILSFEQNLNNVTWDKASTGDSSAKGSSTQDSANNEDQSTKVNNNNNDNNDIIANAEKKQRSDQNIHNPPLSFLEKWLLDESTGQVEEINQIMELSDSMF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query354 2.2.26 [Sep-21-2011]
P81392316 Myb-related protein 306 O N/A no 0.807 0.905 0.454 2e-72
Q7XBH4257 Myb-related protein Myb4 no no 0.327 0.451 0.706 8e-49
O22264371 Transcription factor MYB1 no no 0.372 0.355 0.6 2e-44
P20024340 Myb-related protein Zm1 O N/A no 0.330 0.344 0.658 5e-44
P27898399 Myb-related protein P OS= N/A no 0.338 0.300 0.625 1e-43
Q9SZP1282 Transcription repressor M no no 0.389 0.489 0.573 2e-43
O49608274 Transcription factor MYB3 no no 0.401 0.518 0.571 3e-43
Q9SPG2366 Transcription factor MYB2 no no 0.370 0.357 0.588 4e-43
Q38850249 Transcription repressor M no no 0.370 0.526 0.588 8e-43
Q9S9K9257 Transcription factor MYB3 no no 0.327 0.451 0.655 1e-42
>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1 Back     alignment and function desciption
 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 166/365 (45%), Positives = 206/365 (56%), Gaps = 79/365 (21%)

Query: 1   MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDK+G+KKGPWTPEEDIILVSYIQEHGPGNWR++P+NTGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQ 120
           LRPGIKRG+FT HEE MIIHLQALLGN+WAAIASYLP RTDNDIKNYWNTHLKKKL+K Q
Sbjct: 61  LRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQ 120

Query: 121 SAALEPHMPQDSSATSNNTHPFSKTGNSFSN-ERR----------------SLDFSNQAA 163
           S       P++      N+   S    S    ERR                SLD ++ + 
Sbjct: 121 S-------PENGKCQDGNSSVDSDKSVSKGQWERRLQTDIHMAKQALCDALSLDKTSSST 173

Query: 164 SNNNLRLQQ-------QGSSYASSTENISRLLEGWMRSSPKTSSNSSSALLIKGNGNIFD 216
            +  L   Q       Q S+Y SS ENI+RLLE W + SP  +S++S A   +     F+
Sbjct: 174 DDPKLSTVQTTQPRPFQASTY-SSAENIARLLENWKKKSPVNASSTSQAGSSESTTTSFN 232

Query: 217 NRSIENSIGTYRPKEEQEGGGSGGGGGGGDLISNEEFISILSFEQNLNNVTWDKASTGDS 276
             S+   + T  P E             G + +N      +SF  + +++  D       
Sbjct: 233 YPSV--CLSTSSPSE-------------GAISTN-----FISFNSSNSDILEDH-----D 267

Query: 277 SAKGSSTQDSANNEDQSTKVNNNNNDNNDIIANAEKKQRSDQNIHNPPLSFLEKWLLDES 336
            AK  +  +  N +D+S  + +N                        PLS LEKWLLD+S
Sbjct: 268 QAKFEAATNGVNFQDESKPILDNQM----------------------PLSLLEKWLLDDS 305

Query: 337 TGQVE 341
               +
Sbjct: 306 AAVAQ 310
Transcription factor.
Antirrhinum majus (taxid: 4151)
>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2 Back     alignment and function description
>sp|O22264|MYB12_ARATH Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1 Back     alignment and function description
>sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays PE=2 SV=1 Back     alignment and function description
>sp|P27898|MYBP_MAIZE Myb-related protein P OS=Zea mays GN=P PE=2 SV=1 Back     alignment and function description
>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1 Back     alignment and function description
>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1 Back     alignment and function description
>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1 Back     alignment and function description
>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1 Back     alignment and function description
>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query354
255580240365 r2r3-myb transcription factor, putative 0.946 0.917 0.618 1e-109
224126013323 predicted protein [Populus trichocarpa] 0.875 0.959 0.625 1e-108
225439143321 PREDICTED: myb-related protein 306 [Viti 0.858 0.947 0.593 1e-103
356571804348 PREDICTED: myb-related protein 306-like 0.929 0.945 0.600 9e-99
356504276360 PREDICTED: myb-related protein 306-like 0.949 0.933 0.558 8e-93
296085859279 unnamed protein product [Vitis vinifera] 0.765 0.971 0.553 9e-91
399950064317 R2R3 MYB [Iris fulva] 0.881 0.984 0.532 1e-89
449437664294 PREDICTED: myb-related protein 306-like 0.793 0.955 0.558 1e-86
357508937338 MYB transcription factor [Medicago trunc 0.864 0.905 0.528 9e-85
15223917280 proto-oncogene protein [Arabidopsis thal 0.774 0.978 0.506 3e-82
>gi|255580240|ref|XP_002530950.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223529465|gb|EEF31422.1| r2r3-myb transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/377 (61%), Positives = 262/377 (69%), Gaps = 42/377 (11%)

Query: 1   MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
           MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY
Sbjct: 1   MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60

Query: 61  LRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQ 120
           LRPGIKRGNFTPHEEGMIIHLQALLGN+WAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQ
Sbjct: 61  LRPGIKRGNFTPHEEGMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQ 120

Query: 121 SAALEPHMPQDSSATSNNTHPFSKTGNSFSNERRSLDFSNQAASNNNLRLQ--------- 171
           S AL+P      ++T+      S    SFS + RSLD S  ++S   L  Q         
Sbjct: 121 S-ALDPMAAAPEASTA------SFMSKSFSEKSRSLDLSPNSSSTIKLNHQIASSSTSTS 173

Query: 172 ------QQGSSYASSTENISRLLEGWMRSSPKTSSNSSSALLIK-----GNGNIFDNRSI 220
                    +SYASSTENISRLLEGWMR SPK + +    ++IK      +G+I DN   
Sbjct: 174 TTTITTMTTASYASSTENISRLLEGWMRPSPKPNDH----VIIKEKWSQNDGSIGDNLVA 229

Query: 221 ENSIGTYRPKEEQEG------GGSGGGGGGGDLISNEEFISILSFEQNLNNVTWDKASTG 274
             S+  YRPK ++E       GG     GGGDLIS+EEF SILSFE NLNNV WD  ST 
Sbjct: 230 TTSLQCYRPKADEENGRGGGGGGGCSSMGGGDLISHEEFESILSFE-NLNNVAWDHKSTS 288

Query: 275 DSSAKGSSTQDSANNEDQSTKVNNNNNDNNDIIANAEKKQRSDQNIHNPPLSFLEKWLLD 334
           DS+   +S         +S+  ++   +N        KKQ+SDQN +NPPLSFLEKWLLD
Sbjct: 289 DSTTVATSASTIKGCHQESSASDHQEKENVTAGFTENKKQKSDQN-NNPPLSFLEKWLLD 347

Query: 335 ES-TGQVEEINQIMELS 350
           ES TGQVEE  + MELS
Sbjct: 348 ESGTGQVEE--ESMELS 362

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224126013|ref|XP_002319734.1| predicted protein [Populus trichocarpa] gi|222858110|gb|EEE95657.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439143|ref|XP_002271738.1| PREDICTED: myb-related protein 306 [Vitis vinifera] gi|193795735|gb|ACF21938.1| R2R3 MYB60 transcription factor [Vitis vinifera] Back     alignment and taxonomy information
>gi|356571804|ref|XP_003554062.1| PREDICTED: myb-related protein 306-like [Glycine max] Back     alignment and taxonomy information
>gi|356504276|ref|XP_003520923.1| PREDICTED: myb-related protein 306-like [Glycine max] Back     alignment and taxonomy information
>gi|296085859|emb|CBI31183.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|399950064|gb|AFP65717.1| R2R3 MYB [Iris fulva] Back     alignment and taxonomy information
>gi|449437664|ref|XP_004136611.1| PREDICTED: myb-related protein 306-like [Cucumis sativus] gi|83638483|gb|ABC33923.1| MYB transcription factor [Cucumis sativus] Back     alignment and taxonomy information
>gi|357508937|ref|XP_003624757.1| MYB transcription factor [Medicago truncatula] gi|357508977|ref|XP_003624777.1| MYB transcription factor [Medicago truncatula] gi|355499772|gb|AES80975.1| MYB transcription factor [Medicago truncatula] gi|355499792|gb|AES80995.1| MYB transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|15223917|ref|NP_172358.1| proto-oncogene protein [Arabidopsis thaliana] gi|26450026|dbj|BAC42133.1| putative transcription factor [Arabidopsis thaliana] gi|28827526|gb|AAO50607.1| putative myb family transcription factor [Arabidopsis thaliana] gi|41619088|gb|AAS10021.1| MYB transcription factor [Arabidopsis thaliana] gi|332190230|gb|AEE28351.1| proto-oncogene protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query354
TAIR|locus:2025565280 MYB60 "myb domain protein 60" 0.443 0.560 0.779 4.1e-75
TAIR|locus:2019185330 MYB31 "myb domain protein 31" 0.395 0.424 0.779 8.5e-70
TAIR|locus:2090764323 MYB30 "myb domain protein 30" 0.420 0.461 0.772 1.8e-66
TAIR|locus:2154119352 MYB96 "myb domain protein 96" 0.508 0.511 0.664 3.7e-66
TAIR|locus:2079182333 MYB94 "myb domain protein 94" 0.435 0.462 0.735 3.3e-65
TAIR|locus:2150891326 MYB16 "myb domain protein 16" 0.378 0.411 0.640 2e-47
TAIR|locus:2086233285 MYB15 "myb domain protein 15" 0.511 0.635 0.518 8.8e-47
TAIR|locus:2038520246 MYB13 "myb domain protein 13" 0.511 0.735 0.507 2.3e-46
TAIR|locus:2102152388 MYB106 "myb domain protein 106 0.406 0.371 0.598 4.8e-46
TAIR|locus:2098906299 MYB17 "myb domain protein 17" 0.398 0.471 0.612 1e-45
TAIR|locus:2025565 MYB60 "myb domain protein 60" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 669 (240.6 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
 Identities = 124/159 (77%), Positives = 134/159 (84%)

Query:     1 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60
             MGRPPCCDK+GIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY
Sbjct:     1 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60

Query:    61 LRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQ 120
             LRPGIKRGNFTPHEEGMIIHLQALLGNKWA+IASYLPQRTDNDIKNYWNTHLKKKL K  
Sbjct:    61 LRPGIKRGNFTPHEEGMIIHLQALLGNKWASIASYLPQRTDNDIKNYWNTHLKKKLNKSD 120

Query:   121 S--AALEPHMPQDSSATSNNTHPFSKTGNSFSNERRSLD 157
             S   +   ++   +S+T N  +  S   +S  N  R L+
Sbjct:   121 SDERSRSENIALQTSSTRNTINHRSTYASSTENISRLLE 159
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS
GO:0009414 "response to water deprivation" evidence=IEP
GO:0009416 "response to light stimulus" evidence=IEP
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0010118 "stomatal movement" evidence=IMP
GO:0009751 "response to salicylic acid stimulus" evidence=IEP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
TAIR|locus:2019185 MYB31 "myb domain protein 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090764 MYB30 "myb domain protein 30" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154119 MYB96 "myb domain protein 96" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079182 MYB94 "myb domain protein 94" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150891 MYB16 "myb domain protein 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086233 MYB15 "myb domain protein 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038520 MYB13 "myb domain protein 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098906 MYB17 "myb domain protein 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 1e-49
PLN03091 459 PLN03091, PLN03091, hypothetical protein; Provisio 9e-44
COG5147 512 COG5147, REB1, Myb superfamily proteins, including 4e-16
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 1e-14
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 3e-12
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 1e-11
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 2e-10
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 1e-09
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 6e-09
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 2e-08
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 0.002
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 0.002
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information 
 Score =  166 bits (421), Expect = 1e-49
 Identities = 80/136 (58%), Positives = 98/136 (72%), Gaps = 5/136 (3%)

Query: 5   PCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG 64
           PCC K+G+K+GPWT EED ILVS+I++ G G WRS+P   GLLRC KSCRLRW NYLRP 
Sbjct: 16  PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPS 75

Query: 65  IKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAAL 124
           +KRG  T  EE +I+ L  LLGN+W+ IA  +P RTDN+IKNYWNTHL+KKL + Q    
Sbjct: 76  VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLR-QGIDP 134

Query: 125 EPHMPQDSSATSNNTH 140
           + H P D    +NN H
Sbjct: 135 QTHKPLD----ANNIH 146

Length = 249
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 354
PLN03212249 Transcription repressor MYB5; Provisional 100.0
PLN03091 459 hypothetical protein; Provisional 100.0
KOG0048238 consensus Transcription factor, Myb superfamily [T 100.0
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.76
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.72
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.6
COG5147 512 REB1 Myb superfamily proteins, including transcrip 99.51
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 99.49
KOG0051607 consensus RNA polymerase I termination factor, Myb 99.39
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.38
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.35
PLN03212249 Transcription repressor MYB5; Provisional 99.35
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.31
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.28
PLN03091 459 hypothetical protein; Provisional 99.21
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.18
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 99.05
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.98
KOG0051607 consensus RNA polymerase I termination factor, Myb 98.83
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.83
COG5147512 REB1 Myb superfamily proteins, including transcrip 98.27
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 97.85
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.73
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 97.39
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 97.34
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.31
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 97.28
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 97.22
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 96.94
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 96.77
KOG1279506 consensus Chromatin remodeling factor subunit and 96.76
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 96.71
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 96.71
KOG1279506 consensus Chromatin remodeling factor subunit and 96.62
PRK13923170 putative spore coat protein regulator protein YlbO 96.22
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 95.85
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 95.56
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 95.14
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 95.11
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 94.77
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 94.24
PLN031421033 Probable chromatin-remodeling complex ATPase chain 93.99
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 93.46
PRK13923170 putative spore coat protein regulator protein YlbO 91.97
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 91.03
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 90.78
KOG4282345 consensus Transcription factor GT-2 and related pr 90.75
KOG2656445 consensus DNA methyltransferase 1-associated prote 90.48
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 88.78
KOG1194534 consensus Predicted DNA-binding protein, contains 84.57
PF0828154 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013 82.96
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.2e-35  Score=277.55  Aligned_cols=122  Identities=60%  Similarity=1.177  Sum_probs=116.1

Q ss_pred             CCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcCCCCChhhHHHHHHH
Q 018559            2 GRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHL   81 (354)
Q Consensus         2 gR~pcc~Kp~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WTeEEDelLleL   81 (354)
                      -|+|||+|+++++++||+|||++|+++|++||..+|..||..++.+|+++|||+||.++|+|.+++++||+|||++|+++
T Consensus        13 ~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel   92 (249)
T PLN03212         13 KTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRL   92 (249)
T ss_pred             CCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHH
Confidence            37899999999999999999999999999999999999999986689999999999999999999999999999999999


Q ss_pred             HHHhCCcHHHHHhhCCCCCHHHHHHHHHHhhhhHhhhccCCc
Q 018559           82 QALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSAA  123 (354)
Q Consensus        82 Vk~~G~kWskIAk~LpgRT~~QcKnRW~~lLkkklkK~~~s~  123 (354)
                      +..||++|..||++|||||+++||+||+.++++++.+....+
T Consensus        93 ~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p  134 (249)
T PLN03212         93 HRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDP  134 (249)
T ss_pred             HHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCC
Confidence            999999999999999999999999999999999988765443

>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
1h8a_C128 Crystal Structure Of Ternary Protein-Dna Complex3 L 2e-20
1h88_C159 Crystal Structure Of Ternary Protein-Dna Complex1 L 3e-20
1gv2_A105 Crystal Structure Of C-Myb R2r3 Length = 105 3e-20
1mse_C105 Solution Structure Of A Specific Dna Complex Of The 4e-20
3zqc_A131 Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin 2e-18
1a5j_A110 Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe 3e-18
3osf_A126 The Structure Of Protozoan Parasite Trichomonas Vag 7e-13
2k9n_A107 Solution Nmr Structure Of The R2r3 Dna Binding Doma 2e-10
1mbj_A53 Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 1e-07
1idy_A54 Structure Of Myb Transforming Protein, Nmr, Minimiz 2e-07
1gvd_A52 Crystal Structure Of C-Myb R2 V103l Mutant Length = 1e-05
1gv5_A52 Crystal Structure Of C-Myb R2 Length = 52 3e-05
1mbg_A53 Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53 3e-05
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128 Back     alignment and structure 
Iteration: 1

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 12  IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFT 71
           + KGPWT EED  ++ ++Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 83
Query: 72  PHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
             E+ +I      LGN+WA IA  LP RTDN +KN+WN+ +++K+
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159 Back     alignment and structure
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105 Back     alignment and structure
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105 Back     alignment and structure
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131 Back     alignment and structure
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110 Back     alignment and structure
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126 Back     alignment and structure
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107 Back     alignment and structure
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 Back     alignment and structure
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54 Back     alignment and structure
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52 Back     alignment and structure
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52 Back     alignment and structure
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 3e-64
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 2e-63
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 1e-62
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 3e-55
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 3e-53
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 1e-33
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 4e-52
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 1e-26
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 3e-24
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 5e-20
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 2e-15
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 1e-10
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 3e-05
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 6e-09
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 4e-05
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 9e-09
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-06
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 1e-08
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 1e-07
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 2e-07
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 4e-07
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 6e-07
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 1e-06
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 1e-06
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 1e-04
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 3e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 3e-04
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 7e-04
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
 Score =  198 bits (505), Expect = 3e-64
 Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 12  IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFT 71
           + KGPWT EED  ++  +Q++GP  W  +  +    R  K CR RW N+L P +K+ ++T
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60

Query: 72  PHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKL 116
             E+ +I      LGN+WA IA  LP RTDN IKN+WN+ +++K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query354
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 100.0
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.98
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.98
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.97
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.97
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.97
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.96
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.86
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.82
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.71
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.69
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.68
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.67
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.65
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.64
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.64
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.63
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.62
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.62
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.6
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.6
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.6
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.59
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.58
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.54
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.54
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.54
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.54
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.53
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.51
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.51
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.5
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.49
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.48
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.48
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.47
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.46
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.46
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 99.15
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.41
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.4
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.34
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.32
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.29
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.29
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.29
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.28
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.23
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.22
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.2
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.2
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.82
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.18
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.18
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.18
2cjj_A93 Radialis; plant development, DNA-binding protein, 99.12
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.91
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.86
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 98.86
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.75
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.65
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.59
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.54
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.47
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.45
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.4
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.29
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.2
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.13
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.09
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.01
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 97.9
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 97.86
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 97.84
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.8
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 96.94
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.7
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 97.61
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.51
2crg_A70 Metastasis associated protein MTA3; transcription 97.51
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.23
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.15
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.02
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 96.93
2crg_A70 Metastasis associated protein MTA3; transcription 96.86
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 96.8
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 96.27
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 96.27
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 94.86
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 95.85
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 93.84
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 93.36
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 92.69
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 91.02
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 85.16
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 83.19
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
Probab=100.00  E-value=2.7e-33  Score=229.62  Aligned_cols=105  Identities=42%  Similarity=0.822  Sum_probs=99.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCCCcCCCCChhhHHHHHHHHHHhCCcHH
Q 018559           11 GIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWA   90 (354)
Q Consensus        11 ~lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~ikkg~WTeEEDelLleLVk~~G~kWs   90 (354)
                      .+++|+||+|||++|+.+|..||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||.+|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999889999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHHhhhhHh
Q 018559           91 AIASYLPQRTDNDIKNYWNTHLKKKL  116 (354)
Q Consensus        91 kIAk~LpgRT~~QcKnRW~~lLkkkl  116 (354)
                      .||++|||||+.||++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998764
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 354
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 3e-19
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-09
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 5e-18
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 5e-16
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 1e-15
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 4e-06
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 4e-15
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 5e-13
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 4e-10
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 1e-12
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 2e-11
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 5e-11
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 7e-11
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 7e-10
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 2e-10
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 5e-07
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 6e-10
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 1e-05
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 8e-10
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 5e-07
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (193), Expect = 3e-19
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 12 IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRP 63
          + KGPWT EED  L+  +Q++GP  W  +  +    R  K CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query354
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.69
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.67
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.64
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.63
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.63
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.59
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.55
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.51
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.48
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.45
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.44
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.43
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.39
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.38
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.37
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.32
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.32
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.27
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.24
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.22
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.22
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 99.2
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.11
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.07
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 99.06
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.83
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.82
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.56
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.08
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.04
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.62
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.57
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 97.06
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 96.77
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 96.29
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 96.01
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 95.42
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 95.2
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 95.17
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 87.91
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 84.92
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 83.69
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=5.8e-18  Score=122.57  Aligned_cols=52  Identities=42%  Similarity=0.834  Sum_probs=49.9

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCCceecccCCCccChhhhhhhhhcccCCC
Q 018559           12 IKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPG   64 (354)
Q Consensus        12 lkKG~WT~EEDe~L~~lV~kyG~~nW~~IA~~lg~~Rs~kQCR~RW~n~L~P~   64 (354)
                      |+||+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999998 999999999999999984
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure