Citrus Sinensis ID: 018583

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
MNTQKLNFQETFQKKHLDFGPPSQYFGDIHHQQPWMMRTTTQQHQNLDHARSPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNCSQFSRTCDSSQQFHLYQSPGENFSVLSAEQAVPLEIPWNFYKSPEASCINPLGKQYSGPFDEHQDHRGYASHQEKQSPRFSSSSSFSTGPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVPEFPEGKLEKRSSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKASKDHSKPQNLEKVPEDDPPFNFEGIEFSTSENSGNSHFT
Secondary Structure (PSIPRED)
cccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEcEHEEEEcccccccccccccccccccccHHcccccccccccccccccccHccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHccccccccccccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MNTQKLNFQETFqkkhldfgppsqyfgdihhqqpwmmrtttqqhqnldharspstilsrfespasafyATERYmgfcqydsqaagnncsqfsrtcdssqqfhlyqspgenfsvlsaeqavpleipwnfykspeascinplgkqysgpfdehqdhrgyashqekqsprfsssssfstgpvitnktriRWTQDLHEKFVECVNrlggadkatPKAILKLMDSEGLTIFHVKSHLQKYRMakyvpefpegklekrsslndlpqidVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQqkaskdhskpqnlekvpeddppfnfegiefstsensgnshft
Flexible Loop (DISEMBL)
MNTQKLNFQETFQKKHLDFGPPSQYFGDIHHQQPWMMRTTTQQHQNLDHARSPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNCSQFSRTCDSSQQFHLYQSPGENFSVLSAEQAVPLEIPWNFYKSPEASCINPLGKQYSGPFDEHQDHRGYASHqekqsprfsssssfstgpvitnktrirwTQDLHEKFVECVNRlggadkatPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVPEFPEGKlekrsslndlpqIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKaskdhskpqnlekvpeddppFNFEgiefstsensgnshft
Low Complexity Region (SEG)
MNTQKLNFQETFQKKHLDFGPPSQYFGDIHHQQPWMMRTTTQQHQNLDHARSPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNCSQFSRTCDSSQQFHLYQSPGENFSVLSAEQAVPLEIPWNFYKSPEASCINPLGKQYSGPFDEHQDHRGYASHQEKQSPRfsssssfsTGPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVPEFPEGKLEKRSSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKASKDHSKPQNLEKVPEDDPPFNFEGIEFSTSENSGNSHFT
Disordered region (IsUnstruct)
************************YFGDIHH********************************ASAFYATERYMGFCQYDSQAAGNNCSQFSRTCD**QQFHLYQSPGENFSVLSAEQAVPLEIPWNFYKSPEASCINP***************************************VITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVPEF**************PQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLR*********************************************************
Disordered Region (DISOPRED)
****KLN*Q*********************************************************FYATERYMGFCQ************************************************************************************************************RWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKY**********************************************************************************************************************
Disordered Region (DISEMBL)
MNTQKLNFQETFQKKHLDFGPPSQYFGDIHHQQPWMMRTT************PSTILSRFESPASAFYATERYMGFCQYDSQAAGNNCSQFSRTCDSSQQFHLYQSPGENFSVLSAEQAVPLEIPWNFYKSPEASCINPLGKQYSGPFDEHQ*************************PVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVPEFPEGKLEKRSSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLF********************EDDPPFNFEGIEFST**********
Disordered Region (DISPRO)
**TQKLNFQETFQKKHLDFGPPSQYFGDIHHQQPWMMRTTT**********SPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNCSQFSRTCDSSQQFHLYQSPGENFSVLSAEQAVPLEIPWNFYKSPEAS***********************************************KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYV************************TLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKAS**************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTQKLNFQETFQKKHLDFGPPSQYFGDIHHQQPWMMRTTTQQHQNLDHARSPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNCSQFSRTCDSSQQFHLYQSPGENFSVLSAEQAVPLEIPWNFYKSPEASCINPLGKQYSGPFDEHQDHRGYASHQEKQSPRFSSSSSFSTGPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVPEFPEGKLEKRSSLNDLPQIDVKATLQIxxxxxxxxxxxxxxxxxxxxxRKLQLRIEEQGKHLQMLFDQQQKASKDHSKPQNLEKVPEDDPPFNFEGIEFSTSENSGNSHFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.441	0.377	0.542	6e-44
Q9SAK5	358	Myb family transcription	no	no	0.379	0.374	0.464	1e-28
Q941I2	322	Probable transcription fa	no	no	0.232	0.254	0.445	2e-13
Q700D9	255	Putative Myb family trans	no	no	0.155	0.215	0.618	4e-13
Q9FJV5	276	Probable transcription fa	no	no	0.331	0.423	0.392	5e-13
Q93WJ9	403	Transcription repressor K	no	no	0.155	0.136	0.581	6e-13
Q9C616	388	Probable transcription fa	no	no	0.155	0.141	0.581	8e-13
Q0J235	532	Probable transcription fa	no	no	0.155	0.103	0.581	9e-13
Q9FGT7	635	Two-component response re	no	no	0.178	0.099	0.545	5e-11
Q9ZWJ9	664	Two-component response re	no	no	0.152	0.081	0.545	9e-10

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  178 bits (451), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 90/166 (54%), Positives = 127/166 (76%), Gaps = 10/166 (6%)

Query: 158 ASHQEKQSPRFSSSSSFSTGPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKL 217
            S +++ S R SSSS      V T+K R+RWT +LHE FVE VN+LGG+++ATPKA+LKL
Sbjct: 212 VSSEDQLSGRNSSSS------VATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKL 265

Query: 218 MDSEGLTIFHVKSHLQKYRMAKYVPEFPEGKLE----KRSSLNDLPQIDVKATLQIKEAL 273
           +++ GLTI+HVKSHLQKYR A+Y PE  E   E    K +S+ D+  +D+K +++I +AL
Sbjct: 266 LNNPGLTIYHVKSHLQKYRTARYKPETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQAL 325

Query: 274 QLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKASKDHS 319
           +LQ++VQ+RLHEQLEIQR LQL+IE+QG++LQM+F++QQK   + S
Sbjct: 326 RLQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNKS 371

Transcription factor acting as central integrator of phosphate starvation responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 99/142 (69%), Gaps = 8/142 (5%)

Query: 176 TGPVITN--KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQ 233
           +G V+T   K R+RWT +LHE+FV+ V +LGG DKATPK I+++M  +GLT++H+KSHLQ
Sbjct: 25  SGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 84

Query: 234 KYRMAKYVPEFPEG----KLEKRSSLNDLPQ-IDVKATLQIKEALQLQLDVQRRLHEQLE 288
           K+R+ K  P    G    K   R+S  D+ + +   + +  +   ++Q++VQRRLHEQLE
Sbjct: 85  KFRLGKQ-PHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLE 143

Query: 289 IQRKLQLRIEEQGKHLQMLFDQ 310
           +QR LQLRIE QGK++Q + ++
Sbjct: 144 VQRHLQLRIEAQGKYMQSILER 165

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 10/92 (10%)

Query: 148 FDEHQDHRGYASHQEKQSPRFSSSSSFSTGPVITNKTRIRWTQDLHEKFVECVNRLGGAD 207
           F+ H  HR  A   + Q PRF++              R+RWT  LH  FV  V  LGG +
Sbjct: 139 FNLHNRHRRQA---QPQPPRFTAKRGVRA-------PRMRWTTTLHAHFVHAVQLLGGHE 188

Query: 208 KATPKAILKLMDSEGLTIFHVKSHLQKYRMAK 239
           +ATPK++L+LMD + LT+ HVKSHLQ YR  K
Sbjct: 189 RATPKSVLELMDVQDLTLAHVKSHLQMYRTIK 220

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 42/55 (76%)

Query: 185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAK 239
           R+RWT +LH  FV  V+ LGG  KATPK +LK+MD +GLTI HVKSHLQ YR ++
Sbjct: 25  RLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSR 79

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 13/130 (10%)

Query: 127 NFYKSPEASCINPLGKQYSGPFDEHQDHRGYASHQEKQSPRFSSSSSFSTGPVITNKT-R 185
           NF+  P  S    LG      FD H   R      +     F  SSS   G   + +  R
Sbjct: 58  NFFNKPLLS----LG------FDHHHQRRSNMFQPQIYGRDFKRSSSSMVGLKRSIRAPR 107

Query: 186 IRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVPEFP 245
           +RWT  LH  FV  V  LGG ++ATPK++L+LM+ + LT+ HVKSHLQ YR  K   +  
Sbjct: 108 MRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGS 167

Query: 246 --EGKLEKRS 253
             EGK+EK +
Sbjct: 168 PGEGKVEKEA 177

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAK 239
           R+RWT  LH +FV  V  LGG ++ATPK++L+LMD + LT+ HVKSHLQ YR  K
Sbjct: 221 RMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 275

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAK 239
           R+RWT  LH +FV  V  LGG ++ATPK++L+LMD + LT+ HVKSHLQ YR  K
Sbjct: 215 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 269

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAK 239
           R+RWT  LH +FV  V  LGG ++ATPK++L+LMD + LT+ HVKSHLQ YR  K
Sbjct: 326 RMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 380

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVP 242
           K R+ W+Q+LH+KFV  V +LG  DKA PK IL LM  EGLT  +V SHLQKYR+  Y+ 
Sbjct: 194 KPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASHLQKYRL--YLK 250

Query: 243 EFPEGK 248
           +  EG+
Sbjct: 251 KIDEGQ 256

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRM 237
           K R+ W+ +LH++FV  VN+LG  DKA PK IL++M+  GLT  +V SHLQKYR+
Sbjct: 216 KPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRI 269

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
255579001	424	transcription factor, putative [Ricinus	0.988	0.823	0.490	5e-90
224088208	411	predicted protein [Populus trichocarpa]	0.985	0.846	0.488	2e-87
225441411	377	PREDICTED: uncharacterized protein LOC10	0.963	0.901	0.502	4e-81
147864062	378	hypothetical protein VITISV_031368 [Viti	0.963	0.899	0.506	1e-79
224137870	380	predicted protein [Populus trichocarpa]	0.869	0.807	0.5	3e-78
356533145	672	PREDICTED: uncharacterized protein LOC10	0.869	0.456	0.482	1e-74
297739850	293	unnamed protein product [Vitis vinifera]	0.759	0.914	0.515	2e-64
357509913	387	Two-component response regulator ARR2 [M	0.832	0.759	0.457	3e-64
449457343	400	PREDICTED: uncharacterized protein LOC10	0.852	0.752	0.453	8e-64
297806693	365	hypothetical protein ARALYDRAFT_487493 [	0.747	0.723	0.501	1e-63

>gi|255579001|ref|XP_002530352.1| transcription factor, putative [Ricinus communis] gi|223530099|gb|EEF32013.1| transcription factor, putative [Ricinus communis]

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 207/422 (49%), Positives = 252/422 (59%), Gaps = 73/422 (17%)

Query: 1   MNTQKLNFQETFQKKHLDFGPPSQY-FGDIHHQQPWMMRTTTQ---------QHQNLDHA 50
           MNT K++FQ   Q+ H   G  + + F    +QQ W M    Q         Q QNL   
Sbjct: 1   MNTSKIDFQGRIQQNHGMIGDLALHSFQSFGNQQTWNMGIRAQSPVMESAHLQQQNLRPD 60

Query: 51  RSPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNCSQFSRTCDSSQQFHLYQSPGEN 110
           +S S+I+  FESPASAFYATERYMGF QYD Q        +S++ DS  Q    QS GE 
Sbjct: 61  KSSSSIMRSFESPASAFYATERYMGFPQYDCQVNAVLSCPYSKSYDS--QIPSQQSSGEI 118

Query: 111 FSVLSAEQAVP---LEIPWN-------------FYKSPEASCINPLGK------------ 142
           + V+ A    P   LE+  N             +YKS +  C N LG             
Sbjct: 119 Y-VIDAVNQQPDHNLELRNNLQSITKSHLSDDHYYKSYKGVCSNSLGNKLHQLEQNKLSR 177

Query: 143 --------QYSGPFDEHQDHR-------------GYASHQEKQSPRFSSSSS-------- 173
                   Q+S PF   QDH              G +S QE QSPRFSS           
Sbjct: 178 NGAVSVGNQFSIPFYGDQDHNNHNRFGSNPFVQLGVSSRQEMQSPRFSSGVVSVSSASSG 237

Query: 174 --FSTGPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSH 231
              +TG V+++KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDS+GLTIFHVKSH
Sbjct: 238 NSMATGAVLSSKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSDGLTIFHVKSH 297

Query: 232 LQKYRMAKYVPEFPEGKLEKRSSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQR 291
           LQKYR+AKY+P+  EGK EKR+S+ND+ Q+D K  LQI EALQLQLDVQRRLHEQLEIQ+
Sbjct: 298 LQKYRIAKYMPDSSEGKAEKRTSINDVSQMDPKTGLQITEALQLQLDVQRRLHEQLEIQK 357

Query: 292 KLQLRIEEQGKHLQMLFDQQQKASKDHSKPQNLEKVPEDDPPFNFEGIEFSTSE-NSGNS 350
            LQLRIEEQG+ L+ +FDQQQ+ + +  + QNL+ +  D+  F+ E IE S +E +S NS
Sbjct: 358 NLQLRIEEQGRQLKRMFDQQQRTNNNLFRNQNLDSISPDEQAFSLEDIEISFAEGSSNNS 417

Query: 351 HF 352
           HF
Sbjct: 418 HF 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088208|ref|XP_002308371.1| predicted protein [Populus trichocarpa] gi|222854347|gb|EEE91894.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 198/405 (48%), Positives = 252/405 (62%), Gaps = 57/405 (14%)

Query: 1   MNTQKLNFQETFQKKHL----DF-GPPSQYFGD--IHHQ----QPWMMRTTTQQHQNLDH 49
           MNT+ ++ +E  Q+ H     DF    SQYFG+  I +     QP +M    QQ QN+  
Sbjct: 1   MNTRNIDCEEGVQQNHGVMIGDFVNLSSQYFGNQQIRNMAPRLQPAVMEAGCQQ-QNISP 59

Query: 50  ARSPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNCSQFSRTCDSSQQ------FHL 103
            RS S+I+SRFESPAS+FYATER M F QYD Q   + CSQ+S++ DS Q        +L
Sbjct: 60  ERSFSSIMSRFESPASSFYATERCMRFPQYDCQVGSSFCSQYSKSYDSHQSSDPNYSINL 119

Query: 104 YQSPGENFSVLSAEQAVPLEIPWNFYKSPEAS------------------------CINP 139
            +    NF + S  ++V ++  +++Y S + S                            
Sbjct: 120 GEQADHNFGLNSTLESV-VKPHYSYYNSFDKSDKGLSSSSGNKLPSQQHNKFLDIHGTVS 178

Query: 140 LGKQYSGPFDEHQDHR-------------GYASHQEKQSPRFS-SSSSFSTGPVITNKTR 185
           LG  +S PF  +QD +              + S + KQSPRFS      S+G  +++KTR
Sbjct: 179 LGNNFSVPFQGNQDRQVGCNPYSSPFAGQSFNSLEGKQSPRFSLGGGPTSSGKDLSSKTR 238

Query: 186 IRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVPEFP 245
           IRWTQDLHEKFVECVNRLGGA+KATPKAIL LMDS+GLTIFHVKSHLQKYR+AKY+PE  
Sbjct: 239 IRWTQDLHEKFVECVNRLGGAEKATPKAILNLMDSDGLTIFHVKSHLQKYRIAKYMPEPS 298

Query: 246 EGKLEKRSSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQ 305
           EGK EKR+S+ND+ Q+D+K   QI+EALQLQLDVQRRLHEQLEIQR LQLRIEEQGK L+
Sbjct: 299 EGKAEKRNSINDVSQLDIKTGFQIREALQLQLDVQRRLHEQLEIQRNLQLRIEEQGKQLK 358

Query: 306 MLFDQQQKASKDHSKPQNLEKVPEDDPPFNFEGIEFSTSENSGNS 350
           M+FDQQQK +      QNL+    D+P F+ E I+ S  E S N+
Sbjct: 359 MMFDQQQKTTNSLLNKQNLDITSPDEPAFSLEDIDVSILEGSDNN 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441411|ref|XP_002278675.1| PREDICTED: uncharacterized protein LOC100265807 [Vitis vinifera]

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 193/384 (50%), Positives = 243/384 (63%), Gaps = 44/384 (11%)

Query: 1   MNTQKLNFQETFQKKH-------LDFGP-PSQYFG----DIHHQQPWMMRTTTQQHQNLD 48
           MNTQK++ Q   Q+ H       ++FGP  SQ+ G     I  QQP +      Q Q L 
Sbjct: 1   MNTQKIDCQARIQQNHGVIPDYGIEFGPRSSQFLGAWNMGICSQQP-LATDGGSQLQTLG 59

Query: 49  HARSPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNC-SQFSRTCDSSQQFHLYQSP 107
            A+  STI+SRF+SPASAFYATER+MGF QYD QA+     SQ S +CDS          
Sbjct: 60  PAKPSSTIMSRFDSPASAFYATERFMGFSQYDHQASNPLLYSQSSTSCDSKL-------- 111

Query: 108 GENFSVLSAEQAVPLEIPW-----NFYKSPEASCINPLGKQY-SGPFDEHQDHR------ 155
            +NFSV S   + P   P       F     AS  NP   Q  S PFD +QD R      
Sbjct: 112 -DNFSVDS--NSTPPADPNFQFRNTFQSVMRASSENPNTIQCPSIPFDGNQDIRVCSYLY 168

Query: 156 GYASHQEKQSPRFSS------SSSFSTGPVITNKTRIRWTQDLHEKFVECVNRLGGADKA 209
           G    Q+ Q  R SS      + +    P++ +K RIRWT DLHE+FVECVNRLGGA+KA
Sbjct: 169 GSPLAQQAQCARSSSSGGVSVAPANPVSPILHSKARIRWTPDLHERFVECVNRLGGAEKA 228

Query: 210 TPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVPEFPEGKLEKRSSLNDLPQIDVKATLQI 269
           TPKAILKLMDSEGLTIFHVKSHLQKYR+AKY+PE  EGK EKR+S NDLP +D K  +Q 
Sbjct: 229 TPKAILKLMDSEGLTIFHVKSHLQKYRIAKYMPESAEGKSEKRASTNDLPHLDNKTGMQF 288

Query: 270 KEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKASKDHSKP-QNLEKVP 328
           KEALQ+QLDVQRRLHEQLEIQR LQLRIEEQG+ L+M+F+QQQ+ ++   +  ++L+ + 
Sbjct: 289 KEALQMQLDVQRRLHEQLEIQRNLQLRIEEQGRQLKMMFEQQQQTNRSFMEADEDLDIMS 348

Query: 329 EDDPPFNFEGIEFSTSENSGNSHF 352
            +DP  + + +E  +++ SGN+ F
Sbjct: 349 LEDPSTSLDQVENLSAQGSGNTRF 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147864062|emb|CAN83224.1| hypothetical protein VITISV_031368 [Vitis vinifera]

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 195/385 (50%), Positives = 243/385 (63%), Gaps = 45/385 (11%)

Query: 1   MNTQKLNFQETFQKKH-------LDFGP-PSQYFG----DIHHQQPWMMRTTTQQHQNLD 48
           MNTQK++ Q   Q+ H       ++FGP  SQ+ G     I  QQP +      Q Q L 
Sbjct: 1   MNTQKIDCQARIQQNHGVIPDYGIEFGPRSSQFLGAWNMGICSQQP-LATDGGSQLQTLG 59

Query: 49  HARSPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNC-SQFSRTCDSSQQFHLYQSP 107
            A+  STI+SRF+SPASAFYATER+MGF QYD QA+     SQ S +CDS          
Sbjct: 60  PAKPSSTIMSRFDSPASAFYATERFMGFSQYDHQASNPLLYSQSSTSCDSKL-------- 111

Query: 108 GENFSVLSAEQAVPLEIPW-----NFYKSPEASCINPLGKQY-SGPFDEHQDHR------ 155
            +NFSV S   + P   P       F     AS  NP   Q  S PFD +QD R      
Sbjct: 112 -DNFSVDS--NSTPPADPNFQFRNTFQSVXRASSENPNTIQCPSIPFDGNQDIRVCXYLY 168

Query: 156 GYASHQEKQSPRFSSSSSFSTGPV------ITNKTRIRWTQDLHEKFVECVNRLGGADKA 209
           G    Q+ Q  R SSS   S  P       + +K RIRWT DLHE+FVECVNRLGGA+KA
Sbjct: 169 GSPLAQQAQCARSSSSGGVSVAPANPVSPXLHSKARIRWTPDLHERFVECVNRLGGAEKA 228

Query: 210 TPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVPEFPEGKLEKRSSLNDLPQIDVKAT-LQ 268
           TPKAILKLMDSEGLTIFHVKSHLQKYR+AKY+PE  EGK EKR+S NDLP +D K + +Q
Sbjct: 229 TPKAILKLMDSEGLTIFHVKSHLQKYRIAKYMPESAEGKSEKRASTNDLPHLDNKTSGMQ 288

Query: 269 IKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKASKDHSKP-QNLEKV 327
            KEALQ+QLDVQRRLHEQLEIQR LQLRIEEQG+ L+M+F+QQQ+ ++   +  ++L+ +
Sbjct: 289 FKEALQMQLDVQRRLHEQLEIQRNLQLRIEEQGRQLKMMFEQQQQTNRSFMEADEDLDIM 348

Query: 328 PEDDPPFNFEGIEFSTSENSGNSHF 352
             +DP  + + +E  +++ SGN+ F
Sbjct: 349 SLEDPSTSLDQVENLSAQGSGNTRF 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137870|ref|XP_002322672.1| predicted protein [Populus trichocarpa] gi|222867302|gb|EEF04433.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 222/364 (60%), Gaps = 57/364 (15%)

Query: 43  QHQNLDHARSPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNCSQFSRTCDSSQQFH 102
           Q+QN+   RSP +I+SRFESPASAFYATERYM F QYD Q     CSQ+S + DS    H
Sbjct: 15  QNQNISLERSPDSIMSRFESPASAFYATERYMRFPQYDCQVGNYFCSQYSNSYDSHVSSH 74

Query: 103 L-----YQSPGE----NFSVLSAEQAV--------------------------PLEIPWN 127
                 Y + GE    NF + S  ++V                          P E    
Sbjct: 75  QSSGADYINSGEQADHNFGLKSTLESVVKPQFSCHKSFDKSDKGLSSSSGNKLPSEHHNK 134

Query: 128 FYKSPEASCINPL-----GKQ--------YSGPFDEHQDHRGYASHQEKQSPRFS----- 169
           F  +P  S  N       G Q        Y+ PF E      + S +EK+SPRFS     
Sbjct: 135 FLDNPGVSLENHFLVPFQGNQNRQVDYNPYNSPFSELGR---FNSREEKRSPRFSLGGFP 191

Query: 170 SSSSFSTGPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVK 229
            SS       +++KTRIRWTQDLH+KFVECVNRLGGA+KATPKAILKLMDS+GLTIFHVK
Sbjct: 192 ISSGKDLSTTLSSKTRIRWTQDLHKKFVECVNRLGGAEKATPKAILKLMDSDGLTIFHVK 251

Query: 230 SHLQKYRMAKYVPEFPEGKLEKRSSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEI 289
           SHLQKYR A+Y+P+  EGK EKR+S++D+ Q+DVK   QI+EAL++QLDVQRRLHEQLEI
Sbjct: 252 SHLQKYRSARYMPDSSEGKAEKRTSIDDVSQLDVKTGFQIREALEVQLDVQRRLHEQLEI 311

Query: 290 QRKLQLRIEEQGKHLQMLFDQQQKASKDHSKPQNLEKVPEDDPPFNFEGIEFSTSENS-G 348
           Q+ LQLRIEEQGK L+M+FDQQQK +      QNL     D+  F+ E I+ S  E S  
Sbjct: 312 QKILQLRIEEQGKQLKMMFDQQQKKTNSLLNNQNLNITSPDESTFSLEDIDVSIVEGSNN 371

Query: 349 NSHF 352
           N+HF
Sbjct: 372 NTHF 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533145|ref|XP_003535128.1| PREDICTED: uncharacterized protein LOC100797195 [Glycine max]

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 181/375 (48%), Positives = 231/375 (61%), Gaps = 68/375 (18%)

Query: 33  QPWMMRTT--TQQHQNLDHARSPSTILSRFESPASAFYATERYMG-FCQYDSQAAGNNCS 89
           QP  M +    +Q  N+   +S S+I+SRFESPASAFYATE  MG F QYDSQ  GNN S
Sbjct: 48  QPLAMASGGGVEQEPNIGQTKSSSSIISRFESPASAFYATEMCMGGFPQYDSQI-GNNLS 106

Query: 90  QFSRTCD-SSQQFHLYQSPGE-------------NFSV-----------LSAEQAV---- 120
             S++   S+ +F LYQSP +             NF +           L+++Q V    
Sbjct: 107 LMSQSSKFSNMEFPLYQSPRQSLFMASLANQPPPNFDLSNPLQEILKSHLNSDQCVRSPE 166

Query: 121 ----------------PLEIPWNFYKSPEASCINPL----GKQ----YSGPFDEHQDHRG 156
                           P+E    F     ++ I+P     G Q      GPF+       
Sbjct: 167 DSNKIPYGDFPGSNFLPIEQHKFFIDDAISTGISPSIPSKGNQDQSVSCGPFNLPSAQLS 226

Query: 157 YASHQEKQSPRFS----SSSSFSTGPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPK 212
           ++S QE  SP  S    S +S S GPV+++KTRIRWTQ+LHEKFVECVNRLGGA+KATPK
Sbjct: 227 FSSQQEMLSPTGSMSTTSGNSNSNGPVVSSKTRIRWTQELHEKFVECVNRLGGAEKATPK 286

Query: 213 AILKLMDSEGLTIFHVKSHLQKYRMAKYVPEFPEGKLEKRSSLNDLPQIDVKATLQIKEA 272
           AIL+LMDS+GLTIFHVKSHLQKYR+AK++P+  +GK +KR+++ ++  +DVK  LQIKEA
Sbjct: 287 AILRLMDSDGLTIFHVKSHLQKYRIAKFMPQPTQGKSDKRTNVENV-HLDVKTGLQIKEA 345

Query: 273 LQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKASKDHSKPQNLEKVPEDDP 332
           LQLQLDVQRRLHEQLEIQRKLQLRIEEQGK L+M+FDQQQK S  H   +N      +D 
Sbjct: 346 LQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSNGHLITEN------NDR 399

Query: 333 PFNFEGIEFSTSENS 347
           P + + +  S  E+S
Sbjct: 400 PISSKDVLVSNGEHS 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739850|emb|CBI30032.3| unnamed protein product [Vitis vinifera]

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/299 (51%), Positives = 193/299 (64%), Gaps = 31/299 (10%)

Query: 74  MGFCQYDSQAAGNNC-SQFSRTCDSSQQFHLYQSPGENFSVLSAEQAVPLEIPW-----N 127
           MGF QYD QA+     SQ S +CDS           +NFSV S   + P   P       
Sbjct: 1   MGFSQYDHQASNPLLYSQSSTSCDSKL---------DNFSVDS--NSTPPADPNFQFRNT 49

Query: 128 FYKSPEASCINPLGKQY-SGPFDEHQDHR------GYASHQEKQSPRFSS------SSSF 174
           F     AS  NP   Q  S PFD +QD R      G    Q+ Q  R SS      + + 
Sbjct: 50  FQSVMRASSENPNTIQCPSIPFDGNQDIRVCSYLYGSPLAQQAQCARSSSSGGVSVAPAN 109

Query: 175 STGPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQK 234
              P++ +K RIRWT DLHE+FVECVNRLGGA+KATPKAILKLMDSEGLTIFHVKSHLQK
Sbjct: 110 PVSPILHSKARIRWTPDLHERFVECVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQK 169

Query: 235 YRMAKYVPEFPEGKLEKRSSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQ 294
           YR+AKY+PE  EGK EKR+S NDLP +D K  +Q KEALQ+QLDVQRRLHEQLEIQR LQ
Sbjct: 170 YRIAKYMPESAEGKSEKRASTNDLPHLDNKTGMQFKEALQMQLDVQRRLHEQLEIQRNLQ 229

Query: 295 LRIEEQGKHLQMLFDQQQKASKDHSKP-QNLEKVPEDDPPFNFEGIEFSTSENSGNSHF 352
           LRIEEQG+ L+M+F+QQQ+ ++   +  ++L+ +  +DP  + + +E  +++ SGN+ F
Sbjct: 230 LRIEEQGRQLKMMFEQQQQTNRSFMEADEDLDIMSLEDPSTSLDQVENLSAQGSGNTRF 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509913|ref|XP_003625245.1| Two-component response regulator ARR2 [Medicago truncatula] gi|355500260|gb|AES81463.1| Two-component response regulator ARR2 [Medicago truncatula]

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 162/354 (45%), Positives = 200/354 (56%), Gaps = 60/354 (16%)

Query: 52  SPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNC--SQFSRTCDSSQQFHLYQSPGE 109
           + +TI+SRFESPASAFYATE  MGF ++D Q   N    SQ  +  D   +F L QS  E
Sbjct: 28  NTNTIMSRFESPASAFYATENCMGFAEFDHQVDNNQSLSSQSYKVND--LEFPLCQSLRE 85

Query: 110 NFSVLSAE-------------QAVP---------LEIPWNFYK----------------- 130
           N  +L A              QA+          L  P N  K                 
Sbjct: 86  NNHLLDASNQHDPNFELSNTLQALVKSQLNGNQHLRFPENLNKFSCGNFPFEQQKLFFDG 145

Query: 131 ----SPEASCINPLGKQY---SGPFDEHQDHRGYASHQEKQSPRFSSSSSFSTGP----- 178
               S  +S  N     Y    G +    +   ++S  EK SP  S+ S  ++       
Sbjct: 146 LASVSNSSSFCNKGNHDYMVARGSYHLSVEQLNFSSQHEKLSPTISAGSLSTSLGSTSSS 205

Query: 179 --VITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYR 236
             V+++KTRIRWT+DLHEKFVECVNRLGGA+KATPKAILK+MDSEGLTIFHVKSHLQKYR
Sbjct: 206 GNVVSSKTRIRWTKDLHEKFVECVNRLGGAEKATPKAILKMMDSEGLTIFHVKSHLQKYR 265

Query: 237 MAKYVPEFPEGKLEKRSSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLR 296
            AK++PE  +GK +KR  ++D+  + VK   QIKEALQLQLD QRRLHEQLEIQR LQLR
Sbjct: 266 TAKFMPESAQGKSDKRIHIDDVQHVGVKTGFQIKEALQLQLDAQRRLHEQLEIQRTLQLR 325

Query: 297 IEEQGKHLQMLFDQQQKASKDHSKPQNLEKVPEDDPPFNFEGIEFSTSENSGNS 350
           +EEQG+ L+ +FDQQQK     S   N      DD     + +E S SE + NS
Sbjct: 326 LEEQGRQLKKMFDQQQKTC---SNLFNTPNTINDDTKNIGKDVEVSISERAENS 376

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457343|ref|XP_004146408.1| PREDICTED: uncharacterized protein LOC101221638 [Cucumis sativus] gi|449480907|ref|XP_004156027.1| PREDICTED: uncharacterized protein LOC101229353 [Cucumis sativus]

 Score =  250 bits (638), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 165/364 (45%), Positives = 218/364 (59%), Gaps = 63/364 (17%)

Query: 1   MNTQKLNFQETFQKKHLDFGPPSQYFG-DIHHQQPWMM----------RTTTQQHQNLDH 49
           MN   ++ ++  Q+ H   G  + Y+  +   +QP  M             + QH N   
Sbjct: 1   MNAYGIDSKQEIQQNH---GLITDYYSQNFRAEQPRRMGACAHLSAMDEVESSQHLNSCP 57

Query: 50  ARSPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNCSQFSRTCDSSQQFHLYQSPGE 109
           ++  STI++ FESPASAF+ATE+ MG      Q+  ++          +    ++QS  E
Sbjct: 58  SKPSSTIINLFESPASAFFATEQCMGIPPIQFQSGSSS---------FNSLSTIFQSSAE 108

Query: 110 NFSVLSAEQA-VPLEIP-------------WNFYKSPEASCI---------NPLGKQYSG 146
           NFS+ SAEQ+ V  E                +F   P+ S +         + + K YS 
Sbjct: 109 NFSLDSAEQSGVDSEFSNTLQSVVKSQLCKRSFNGLPKGSFVEHKVFDGSSDTIKKHYSV 168

Query: 147 PFDEHQDHRG-YASHQE----KQSPRFSS---------SSSFSTGPVITNKTRIRWTQDL 192
           PF   +D  G Y S  +      SPRFS          SSS  +G   T KTRIRWTQDL
Sbjct: 169 PF---KDQIGCYNSIAQPSFCSTSPRFSCLGGSIGPGSSSSSFSGNGFTTKTRIRWTQDL 225

Query: 193 HEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVPEFPEGKLEKR 252
           HEKFV+CVNRLGGA+KATPKAILKLMDSEGLTIFHVKSHLQKYR+AKY+PE  E + ++R
Sbjct: 226 HEKFVDCVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRIAKYMPESAERRCDRR 285

Query: 253 SSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQ 312
           + +N++ ++D K  +QIK+ALQLQLDVQRRLH+QLEIQRKLQL+IEEQGK L+M+FDQQQ
Sbjct: 286 NCMNEVTELDAKTAMQIKDALQLQLDVQRRLHDQLEIQRKLQLQIEEQGKQLKMMFDQQQ 345

Query: 313 KASK 316
           + +K
Sbjct: 346 ETNK 349

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806693|ref|XP_002871230.1| hypothetical protein ARALYDRAFT_487493 [Arabidopsis lyrata subsp. lyrata] gi|297317067|gb|EFH47489.1| hypothetical protein ARALYDRAFT_487493 [Arabidopsis lyrata subsp. lyrata]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 155/309 (50%), Positives = 185/309 (59%), Gaps = 45/309 (14%)

Query: 68  YATERYMGFCQYDSQAAGNNCSQFSRTCDSSQ----QFHLYQ-------SPGENFSVLSA 116
           + TE + G   YD  A  +    F   C SS+     FH Y        S  ++ S+L  
Sbjct: 39  WTTETFSGLSPYDCTANQS----FPVQCSSSKPYPSSFHPYHHQSSDPPSLDQSVSMLPM 94

Query: 117 EQAVPLEIPWNFYKSPEA---SCINPLGKQYSGPFDEHQD---------------HRGYA 158
            Q +P +    FY+   A   +  N     YS  F+ + D               H  ++
Sbjct: 95  -QPLPDQYLKPFYQRSCANDFAATNASSASYSLSFEANHDPQELCRRTYSSSNVTHLNFS 153

Query: 159 SHQEKQS-PRFSSSSSFST-----GPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPK 212
           S Q KQ+ PRFSS  SFST      P   NKTRIRWTQDLHEKFVECVNR+GGADKATPK
Sbjct: 154 SLQPKQNHPRFSSPPSFSTHGGSVAPNCVNKTRIRWTQDLHEKFVECVNRIGGADKATPK 213

Query: 213 AILKLMDSEGLTIFHVKSHLQKYRMAKYVPEFPEGKLEKRSSLNDLPQIDVKATLQIKEA 272
           AILKLMDS+GLTIFHVKSHLQKYR+AKY+PE  EGK EKR+   +L Q+D +  +QIKEA
Sbjct: 214 AILKLMDSDGLTIFHVKSHLQKYRIAKYMPESQEGKFEKRACAKELSQLDTRTGVQIKEA 273

Query: 273 LQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKASKDHSKPQNLEK-----V 327
           LQLQLDVQR LHEQLEIQR LQLRIEEQGK L+M+ +QQQK  K   KP + E       
Sbjct: 274 LQLQLDVQRHLHEQLEIQRNLQLRIEEQGKQLKMMMEQQQKTKKSLLKPPDAEASLCLLA 333

Query: 328 PEDDPPFNF 336
            +D PP  F
Sbjct: 334 SDDSPPSPF 342

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2170199	375	AT5G06800 [Arabidopsis thalian	0.614	0.578	0.549	6.8e-56
TAIR|locus:2100880	442	AT3G04450 [Arabidopsis thalian	0.433	0.346	0.528	1.4e-41
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.450	0.384	0.521	2.2e-41
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.371	0.320	0.609	6.1e-39
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.470	0.580	0.491	5.5e-38
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.439	0.345	0.490	2.4e-35
TAIR|locus:2038957	397	AT2G20400 "AT2G20400" [Arabido	0.419	0.372	0.506	1.2e-33
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.371	0.325	0.496	1.3e-31
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.371	0.332	0.496	3.8e-30
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.195	0.261	0.554	2e-29

TAIR|locus:2170199 AT5G06800 [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 128/233 (54%), Positives = 151/233 (64%)

Query:   103 LYQ-SPGENFSVLSAEQAVPLEIPWNFYKSPEASCINPLGKQYSGPFDEH-----QDHRG 156
             LYQ S   +F+  +A  A    + +     P+  C     + YS     H       H+ 
Sbjct:   111 LYQRSCSNDFAATNASSA-SYSLSFEASHDPQELC----RRTYSNSNVTHLNFTSSQHQP 165

Query:   157 YASHQEKQSPRXXXXXXXXTGPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILK 216
               SH    SP           P   NKTRIRWTQDLHEKFVECVNRLGGADKATPKAILK
Sbjct:   166 KQSHPRFSSPPSFSIHGGSMAPNCVNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILK 225

Query:   217 LMDSEGLTIFHVKSHLQKYRMAKYVPEFPEGKLEKRSSLNDLPQIDVKATLQIKEALQLQ 276
              MDS+GLTIFHVKSHLQKYR+AKY+PE  EGK EKR+   +L Q+D +  +QIKEALQLQ
Sbjct:   226 RMDSDGLTIFHVKSHLQKYRIAKYMPESQEGKFEKRACAKELSQLDTRTGVQIKEALQLQ 285

Query:   277 LDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKASKDHSKPQNLEKVPE 329
             LDVQR LHEQLEIQR LQLRIEEQGK L+M+ +QQQK     +K   L+K+P+
Sbjct:   286 LDVQRHLHEQLEIQRNLQLRIEEQGKQLKMMMEQQQK-----NKESLLKKLPD 333

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2100880 AT3G04450 [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 83/157 (52%), Positives = 120/157 (76%)

Query:   180 ITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAK 239
             +T+K R+RWT +LHE FVE +N+LGG+++ATPKA+LKL++S GLT++HVKSHLQKYR A+
Sbjct:   235 MTSKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRTAR 294

Query:   240 YVPEFP---EGKLEKR-SSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQL 295
             Y PE     E  L K   ++ D+  +D+K +++I EAL+LQ+ VQ++LHEQLEIQR LQL
Sbjct:   295 YKPELSKDTEEPLVKNLKTIEDIKSLDLKTSIEITEALRLQMKVQKQLHEQLEIQRSLQL 354

Query:   296 RIEEQGKHLQMLFDQQQKASKDHSKPQNLEKVPEDDP 332
             +IEEQG++LQM+ ++QQK  ++     +   +PE DP
Sbjct:   355 QIEEQGRYLQMMIEKQQKMQENKKDSTSSSSMPEADP 391

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 85/163 (52%), Positives = 123/163 (75%)

Query:   161 QEKQSPRXXXXXXXXTGPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDS 220
             Q+  S          +  V T+K R+RWT +LHE FVE VN+LGG+++ATPKA+LKL+++
Sbjct:   209 QQMVSSEDQLSGRNSSSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNN 268

Query:   221 EGLTIFHVKSHLQKYRMAKYVPEFPE--GKLE--KRSSLNDLPQIDVKATLQIKEALQLQ 276
              GLTI+HVKSHLQKYR A+Y PE  E  G+ +  K +S+ D+  +D+K +++I +AL+LQ
Sbjct:   269 PGLTIYHVKSHLQKYRTARYKPETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQ 328

Query:   277 LDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKASKDHS 319
             ++VQ+RLHEQLEIQR LQL+IE+QG++LQM+F++QQK   + S
Sbjct:   329 MEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNKS 371

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 81/133 (60%), Positives = 106/133 (79%)

Query:   181 TNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKY 240
             T K R+RWT +LHE FVE VN LGG+++ATPK +LK+M  EGLTI+HVKSHLQKYR A+Y
Sbjct:   223 TGKARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTARY 282

Query:   241 VPEFPE-GKLEKR-SSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIE 298
              PE  E G  E++ + L  +  +D+K  + I EAL+LQ++VQ++LHEQLEIQR LQLRIE
Sbjct:   283 RPEPSETGSPERKLTPLEHITSLDLKGGIGITEALRLQMEVQKQLHEQLEIQRNLQLRIE 342

Query:   299 EQGKHLQMLFDQQ 311
             EQGK+LQM+F++Q
Sbjct:   343 EQGKYLQMMFEKQ 355

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 83/169 (49%), Positives = 120/169 (71%)

Query:   182 NKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYV 241
             +K R+RWT +LHE+FV+ V +LGG D+ATPK +L++M  +GLTI+HVKSHLQKYR+AKY+
Sbjct:    14 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 73

Query:   242 PEFP-EGK-LEKRSSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEE 299
             P+   EGK  +K+ S + L  +D  + +QI EAL+LQ++VQ+RLHEQLE+QR+LQLRIE 
Sbjct:    74 PDSSSEGKKTDKKESGDMLSGLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEA 133

Query:   300 QGKHLQMLFDQQQKASKDHSKPQNLEKVPEDDPPFNFEGIEFSTSENSG 348
             QGK+L+ + ++QQ+ S    +P +     + DP       E    + SG
Sbjct:   134 QGKYLKKIIEEQQRLSGVLGEP-SAPVTGDSDPATPAPTSESPLQDKSG 181

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 79/161 (49%), Positives = 110/161 (68%)

Query:   177 GPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYR 236
             G     K+R+RWT +LHE FV+ V +L G +KATPKA+ KLM+ EGLTI+HVKSHLQKYR
Sbjct:   235 GSAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYR 294

Query:   237 MAKYVPEFPEGKL-----EKRSSLNDLPQIDVK-ATLQIKEALQLQLDVQRRLHEQLEIQ 290
             +AKY+PE  E K      EK+ +L+     + K   +Q+ EAL++Q++VQ++LHEQLE+Q
Sbjct:   295 LAKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLTEALRMQMEVQKQLHEQLEVQ 354

Query:   291 RKLQLRIEEQGKHLQMLFDQQQKASKDHSKPQNLEKVPEDD 331
             R LQLRIEE  K+L+ + ++Q+K  +  S        P DD
Sbjct:   355 RVLQLRIEEHAKYLEKMLEEQRKTGRWISSSSQTVLSPSDD 395

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2038957 AT2G20400 "AT2G20400" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 76/150 (50%), Positives = 101/150 (67%)

Query:   183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVP 242
             K R+RWT +LHE FV+ VN+LGG+++ATPK +LK M  EGLTIFHVKSHLQKYR AKY+P
Sbjct:   231 KGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQKYRTAKYIP 290

Query:   243 EFPEGKLEKR-SSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQG 301
                EG  E R + L  +   D K  + I E L++Q++ Q++LHEQLE  R +QLRIEEQG
Sbjct:   291 VPSEGSPEARLTPLEQITSDDTKRGIDITETLRIQMEHQKKLHEQLESLRTMQLRIEEQG 350

Query:   302 KHLQMLFDQQQKASKDHSKPQNLE-KVPED 330
             K L M+ ++Q        + +    K PE+
Sbjct:   351 KALLMMIEKQNMGFGGPEQGEKTSAKTPEN 380

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 73/147 (49%), Positives = 100/147 (68%)

Query:   183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVP 242
             K R++WT DLHE+FVE VN+LGG DKATPK I+K+M   GLT++H+KSHLQKYR++K + 
Sbjct:    45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLN 104

Query:   243 EFPEGKLEKRSSLNDL----PQIDVKAT------------LQIKEALQLQLDVQRRLHEQ 286
                   L K S +  +    P++D   +            L I +ALQ+Q++VQRRLHEQ
Sbjct:   105 GQANSSLNKTSVMTMVEENPPEVDESHSESLSIGPQPSMNLPISDALQMQIEVQRRLHEQ 164

Query:   287 LEIQRKLQLRIEEQGKHLQMLFDQQQK 313
             LE+QR LQLRIE QGK+LQ + ++ Q+
Sbjct:   165 LEVQRHLQLRIEAQGKYLQSILEKAQE 191

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 73/147 (49%), Positives = 102/147 (69%)

Query:   183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVP 242
             K R++WT DLHE+F+E VN+LGGADKATPK I+K+M   GLT++H+KSHLQKYR++K + 
Sbjct:    45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNLN 104

Query:   243 -----EFPE-GKL----EKRSSLNDLPQIDVKATLQ------IKEALQLQLDVQRRLHEQ 286
                   F + G +    EK    +++   ++    Q      I EALQ+Q++VQRRLHEQ
Sbjct:   105 GQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEALQMQIEVQRRLHEQ 164

Query:   287 LEIQRKLQLRIEEQGKHLQMLFDQQQK 313
             LE+QR LQLRIE QGK+LQ + ++ Q+
Sbjct:   165 LEVQRHLQLRIEAQGKYLQSVLEKAQE 191

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
 Identities = 41/74 (55%), Positives = 57/74 (77%)

Query:   183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVP 242
             K R+RWT DLH++FV+ V +LGGADKATPK++LKLM  +GLT++H+KSHLQKYR+ +   
Sbjct:     7 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRLGQQ-- 64

Query:   243 EFPEGKLEKRSSLN 256
                +GK + R+  N
Sbjct:    65 ---QGKKQNRTEQN 75

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	2e-19
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	5e-19
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	4e-08
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-06

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 80.5 bits (199), Expect = 2e-19
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYR 236
           K R+ WT+DLH++F++ V +LGG D ATPK IL+LM  +GLT   V SHLQKYR
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 79.2 bits (196), Expect = 5e-19
 Identities = 31/49 (63%), Positives = 41/49 (83%)

Query: 267 LQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKAS 315
           +QI EAL+LQ++VQRRLHEQLE+QR LQ+RIE QGK+LQ + ++ QK  
Sbjct: 2   MQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTL 50

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 54.4 bits (130), Expect = 4e-08
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 156 GYASHQEKQSPRFSSSSSFSTGPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAIL 215
           G  S  +++  + S  S  +  P    K ++ WT +LH +FV  V +LG  +KA P  IL
Sbjct: 209 GECSSVDRKDNQASPKSCKNAAPG-KKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRIL 266

Query: 216 KLMDSEGLTIFHVKSHLQKYR 236
           +LM  + LT  ++ SHLQKYR
Sbjct: 267 ELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYR 236
           R  WT +  E  +E V + G  +      I K +   G T    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHL--PGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.91
PLN03162	526	golden-2 like transcription factor; Provisional	99.9
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.86
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.34
smart00426	68	TEA TEA domain.	89.8
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	89.2

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.91  E-value=1.3e-24  Score=161.92  Aligned_cols=51  Identities=63%  Similarity=0.883  Sum_probs=48.8

Q ss_pred             ccCHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018583          266 TLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKASK  316 (353)
Q Consensus       266 ~~qi~EALrlQmEVQrrLHEQLEVQR~LQLRIEAQGKYLQsmLekaqk~~~  316 (353)
                      |++|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999999999999999999999863

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.90  E-value=3.6e-24  Score=211.27  Aligned_cols=64  Identities=41%  Similarity=0.660  Sum_probs=59.4

Q ss_pred             CCCCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHhccCCC
Q 018583          178 PVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKYVP  242 (353)
Q Consensus       178 ~~~~~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl~~~~p  242 (353)
                      ....+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.++..
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l  293 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHL  293 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccc
Confidence            344689999999999999999999998 7999999999999999999999999999999997643

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.86  E-value=7.9e-22  Score=148.95  Aligned_cols=56  Identities=57%  Similarity=0.945  Sum_probs=54.4

Q ss_pred             CCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHhc
Q 018583          183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMA  238 (353)
Q Consensus       183 K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl~  238 (353)
                      |+|++||+|+|++|++||+.||+.+.||||.|+++|++++||+.+|+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.34  E-value=0.00055  Score=48.87  Aligned_cols=48  Identities=35%  Similarity=0.456  Sum_probs=41.7

Q ss_pred             CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhH
Q 018583          185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYR  236 (353)
Q Consensus       185 RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYR  236 (353)
                      |-.||+|=++.|++||.++|. +  .-+.|.+.|+ .|-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999982 2  7899999999 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=89.80  E-value=0.33  Score=38.95  Aligned_cols=46  Identities=24%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChH-HHHhh---h-----------CCCCc--cHHHHHHHHhh
Q 018583          187 RWTQDLHEKFVECVNRLGGADKATPK-AILKL---M-----------DSEGL--TIFHVKSHLQK  234 (353)
Q Consensus       187 rWT~eLH~rFV~AV~qLGG~dkAtPK-~IL~l---M-----------~v~GL--T~~hVkSHLQK  234 (353)
                      .|.++|-..|++|+...-  ...+=| .++..   .           ...|.  |..+|.||||.
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999999885  222222 22211   1           12454  77889999985

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=89.20  E-value=0.34  Score=36.92  Aligned_cols=39  Identities=33%  Similarity=0.469  Sum_probs=29.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 018583          281 RRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKASKDHSK  320 (353)
Q Consensus       281 rrLHEQLEVQR~LQLRIEAQGKYLQsmLekaqk~~~s~~~  320 (353)
                      .-|..|+||||+|.=.+|.| |-||.-+|.+.+-+.+.+.
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl~~ile   44 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYLQSILE   44 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHH
Confidence            45778899999998888888 5677777777776655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	353
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		4e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMA 238
           K R+ WT +LH KF+  V+ LG  ++A PK IL LM+ + LT  +V SHLQK+R+A
Sbjct: 5   KPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	2e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 85.4 bits (211), Expect = 2e-21
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAK 239
           K R+ WT +LH KF+  V+ LG  ++A PK IL LM+ + LT  +V SHLQK+R+A 
Sbjct: 5   KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 52/310 (16%), Positives = 96/310 (30%), Gaps = 95/310 (30%)

Query: 30  HHQQPWM-MRTTTQQHQNLDHARSPSTILSRFESPASAFYATERYMGFCQYDSQAAGNNC 88
           HH    M   T   Q+Q  D       ILS FE    AF           +D +    + 
Sbjct: 1   HHHHHHMDFETGEHQYQYKD-------ILSVFED---AFVD--------NFDCK----DV 38

Query: 89  SQFSRTCDSSQQF-HLYQSPGEN------FSVL--SAEQAV------PLEIPWNFYKSP- 132
               ++  S ++  H+  S          F  L    E+ V       L I + F  SP 
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 133 EASCINPLGKQYSGPFDEHQDHRGYASHQEKQSPRFSSSSSFSTGPVITNKTRIRWTQDL 192
           +     P     S     + + R            ++ +  F+   V    +R+      
Sbjct: 99  KTEQRQP-----SMMTRMYIEQR---------DRLYNDNQVFAKYNV----SRL------ 134

Query: 193 HEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHV----KSHL--QKYRMAKYVPEFPE 246
                +   +L        +A+L+L  ++ + I  V    K+ +        K   +   
Sbjct: 135 -----QPYLKL-------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 247 G----KLEKRSSLNDLPQIDVKATLQIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGK 302
                 L+  +S   +        L++ + L  Q+D       + +    ++LRI     
Sbjct: 183 KIFWLNLKNCNSPETV--------LEMLQKLLYQID--PNWTSRSDHSSNIKLRIHSIQA 232

Query: 303 HLQMLFDQQQ 312
            L+ L   + 
Sbjct: 233 ELRRLLKSKP 242

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 45/258 (17%), Positives = 76/258 (29%), Gaps = 77/258 (29%)

Query: 87  NCSQFSRTCDSS---QQFHLYQSPGENFSVLSAEQAVP---LEIPWNFYKSPEASCINPL 140
           NC + +   +SS    +   Y+   +  SV      +P   L + W      +   +   
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV--- 407

Query: 141 GKQYSGPFDEHQDHRGYASHQEKQSPRFSSSSSFSTGPVI-----TNKTRIRWTQDLHEK 195
                     ++ H+   S  EKQ    + S        I       K ++     LH  
Sbjct: 408 ---------VNKLHK--YSLVEKQPKESTIS--------IPSIYLELKVKLENEYALHRS 448

Query: 196 FVECVNRLGGADKATPKAILKLMDSEGLTI--------FHVKSHLQKYRMAKYVPEFP-- 245
            V+  N            I K  DS+ L           H+  HL+     + +  F   
Sbjct: 449 IVDHYN------------IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 246 -------EGKLEKRSSLNDLPQIDVKATLQIKEALQLQL------DVQRRLHEQLEIQRK 292
                  E K+ +  S        +  TLQ     QL+       D   +    +     
Sbjct: 497 FLDFRFLEQKI-RHDSTAWNASGSILNTLQ-----QLKFYKPYICDNDPKYERLVNAILD 550

Query: 293 LQLRIEEQ---GKHLQML 307
              +IEE     K+  +L
Sbjct: 551 FLPKIEENLICSKYTDLL 568

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	353
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	93.07
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	90.38
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	87.89
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	83.09
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	81.91
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	80.5

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=3.2e-29  Score=192.76  Aligned_cols=60  Identities=47%  Similarity=0.776  Sum_probs=56.9

Q ss_pred             CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHhccC
Q 018583          180 ITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKY  240 (353)
Q Consensus       180 ~~~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl~~~  240 (353)
                      +++|+|++||+|||++||+||++|| .|+||||+||++|+|+|||++||||||||||+...
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~   61 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999998 79999999999999999999999999999999753

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=93.07  E-value=0.29  Score=38.12  Aligned_cols=47  Identities=11%  Similarity=0.094  Sum_probs=39.5

Q ss_pred             CCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhH
Q 018583          184 TRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYR  236 (353)
Q Consensus       184 ~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYR  236 (353)
                      .+-.||+|=+.+|++||...|+    .=+.|-+.|+  +=|..+++.|-++|-
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~~   63 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRLP   63 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred             cCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHhc
Confidence            3678999999999999999993    3467777764  799999999999873

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=90.38  E-value=0.98  Score=33.86  Aligned_cols=50  Identities=26%  Similarity=0.398  Sum_probs=41.1

Q ss_pred             CCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHhc
Q 018583          183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMA  238 (353)
Q Consensus       183 K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl~  238 (353)
                      ..+-.||+|=++.|+++|..+|-    .=+.|-+.|  +|=|-.+|+.|.++|-..
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            45668999999999999999983    446666654  789999999999988554

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.89  E-value=1.2  Score=33.38  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=41.1

Q ss_pred             CCCcccChHHHHHHHHHHHHhCCCCCCCh---HHHHhhhCCCCccHHHHHHHHhhhHhc
Q 018583          183 KTRIRWTQDLHEKFVECVNRLGGADKATP---KAILKLMDSEGLTIFHVKSHLQKYRMA  238 (353)
Q Consensus       183 K~RlrWT~eLH~rFV~AV~qLGG~dkAtP---K~IL~lM~v~GLT~~hVkSHLQKYRl~  238 (353)
                      ..+=.||+|=+++|++||..+| .+...|   +.|-+.|  +|=|-.+|+.|-++|-..
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence            3455899999999999999998 333223   4455554  689999999999999764

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=83.09  E-value=1.8  Score=34.70  Aligned_cols=56  Identities=23%  Similarity=0.280  Sum_probs=37.3

Q ss_pred             CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHh---hh-C-----------C--CCccHHHHHHHHhhhHhcc
Q 018583          182 NKTRIRWTQDLHEKFVECVNRLGGADKATPKAILK---LM-D-----------S--EGLTIFHVKSHLQKYRMAK  239 (353)
Q Consensus       182 ~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~---lM-~-----------v--~GLT~~hVkSHLQKYRl~~  239 (353)
                      .+..=.|.++|-..|++|++..--....+.+  |.   .| |           .  .-=|+.+|.||||.-|..+
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~--ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~   75 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYPPCGRRKII--LSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK   75 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSCSSSCCCCC--HHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCCCCcccee--ecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence            3455689999999999999988522233322  21   11 1           1  3348889999999887654

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=81.91  E-value=6.1  Score=28.53  Aligned_cols=50  Identities=20%  Similarity=0.176  Sum_probs=40.0

Q ss_pred             CCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHh
Q 018583          183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRM  237 (353)
Q Consensus       183 K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl  237 (353)
                      ..+-.||+|=.+++++||..+| .  -.=+.|-+.|  +|=|-.+++.|-++|-.
T Consensus         6 ~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            6 SGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            4556799999999999999998 1  1246677776  68899999999988754

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=80.50  E-value=9.5  Score=29.29  Aligned_cols=51  Identities=8%  Similarity=0.077  Sum_probs=40.5

Q ss_pred             CCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhC-CCCccHHHHHHHHhhhHh
Q 018583          184 TRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMD-SEGLTIFHVKSHLQKYRM  237 (353)
Q Consensus       184 ~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~-v~GLT~~hVkSHLQKYRl  237 (353)
                      .+-.||.+=..+|++||..+|   +-+|.+--++-. |||=|-.+|+.|-+.+.-
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            344699999999999999998   237876555443 689999999999887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	353
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	3e-20

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 81.1 bits (200), Expect = 3e-20
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAK 239
           K R+ WT +LH KF+  V+ LG  ++A PK IL LM+ + LT  +V SHLQK+R+A 
Sbjct: 5   KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	353
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	90.35
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	89.42

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2e-26  Score=175.21  Aligned_cols=60  Identities=47%  Similarity=0.757  Sum_probs=56.4

Q ss_pred             CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHhccC
Q 018583          180 ITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKY  240 (353)
Q Consensus       180 ~~~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl~~~  240 (353)
                      ..+|+|++||+|||++||+||++||+ ++||||.|+++|+|+|||+.||+|||||||+...
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999975 8999999999999999999999999999999753

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.35  E-value=0.49  Score=32.94  Aligned_cols=48  Identities=27%  Similarity=0.436  Sum_probs=40.1

Q ss_pred             CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHhc
Q 018583          185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMA  238 (353)
Q Consensus       185 RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl~  238 (353)
                      ..+||+|=++.|++||...|.    .=..|-+.|  +|=|..+|++|.++|...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            468999999999999999983    456777766  488999999999988654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.45  Score=31.85  Aligned_cols=44  Identities=23%  Similarity=0.255  Sum_probs=36.2

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhh
Q 018583          187 RWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKY  235 (353)
Q Consensus       187 rWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKY  235 (353)
                      .||.+=+.++++||.+.|   ...=+.|-+.|+  |=|..+++.|-.+|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G---~~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG---FGNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC---TTCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC---CccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            399999999999999998   223566777775  66999999999887