Citrus Sinensis ID: 018586

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHcccccccccccccccccEEEEEccEEEEcccccEEEEEEEEEEcccccEEEEEcccccccccccccccccccHHHccccccHHHHHHHHHHHHHccccccccccccccccEEEEEccHHHHHHHccccccccEEEcccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHccHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccHHHHHHHHHcccHHHHHHHccccHcccccccccccccccccccccccccccccccccccccccccccEEEEEcEEcccccccccEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEccccHHHHcccccHHHHHHHHHHHHccccccHEEEccccccEEEEEccHHHHHHHHccccccHccccccccccHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcHHHHHHcccccEEEEEcc
Coil and Loop (DISEMBL)
mdteaelpkrstarhkcVACYKQFKRKDHLIEHMKIsyhsvhqpkcaVCQKLSKSFESLREhltgplskahcsgifsdrgcnlcmnifdspsslikhkeacslsapvpfektlsNAESQKKISGaidekrtcrgpkavamdcemvgggsngtlDLCARVclvdedenvifhtyvqpqlpvtnyryevtglteediknamplkEVKDKILEILNNGESTGRLMLDDGKARLLVGHGlehdldslrmnypdhmlrdtakyrplmktnlvsHSLKYLTRTYlgydiqsgvhdpyedCVSVMRLYKRFRRQDHQVeeignqnttgsfdsykykelekmspnelyqisksdyrcwcld
Flexible Loop (DISEMBL)
mdteaelpkrstarhkcvacYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPvpfektlsnaesqkkisgaidekrtcrgPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIfhtyvqpqlpvtnYRYEVTGLteediknamplkeVKDKILEILNNGESTGRLMLDDGKARLLVGHGLehdldslrmnYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDhqveeignqnttgsfdsYKYKELEkmspnelyqisksdyrcwCLD
Low Complexity Region (SEG)
MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD
Disordered region (IsUnstruct)
**************HKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIK***************************************KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH*****************************LYQISKSDYRCWCL*
Disordered Region (DISOPRED)
*****************VACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR*******************GCNLCMNIFDSPSS***************************************RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD***********************************KSDYRCWCLD
Disordered Region (DISEMBL)
**************HKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD
Disordered Region (DISPRO)
************ARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSP*****************************************RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEI*************YKELEKMSPNELYQISKSDYRCWCLD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
Q08237	289	RNA exonuclease 4 OS=Sacc	yes	no	0.436	0.532	0.370	7e-25
Q6PAQ4	432	RNA exonuclease 4 OS=Mus	yes	no	0.495	0.405	0.340	2e-24
Q6FQA0	263	RNA exonuclease 4 OS=Cand	yes	no	0.433	0.581	0.366	3e-24
Q9GZR2	422	RNA exonuclease 4 OS=Homo	yes	no	0.427	0.357	0.363	4e-24
Q4WHF8	310	RNA exonuclease 4 OS=Neos	yes	no	0.526	0.6	0.347	6e-24
Q4IEV5	319	RNA exonuclease 4 OS=Gibb	yes	no	0.441	0.489	0.356	7e-24
Q6BIK6	272	RNA exonuclease 4 OS=Deba	yes	no	0.473	0.613	0.331	8e-24
Q91560	421	RNA exonuclease 4 OS=Xeno	N/A	no	0.430	0.361	0.371	1e-23
Q6CMT3	294	RNA exonuclease 4 OS=Kluy	yes	no	0.450	0.540	0.354	3e-23
P0CQ44	408	RNA exonuclease 4 OS=Cryp	yes	no	0.441	0.382	0.339	4e-23

>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX4 PE=1 SV=1

 Score =  115 bits (287), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 16/170 (9%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K +AMDCE VG G  G     AR+ +V+   +V+   +V+P+  V  +R  V+G+  E +
Sbjct: 120 KYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHM 179

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
           KNA+  KE + K  +IL              + R+LVGH L+HDL++L +++P  +LRDT
Sbjct: 180 KNAITFKEAQKKTADIL--------------EGRILVGHALKHDLEALMLSHPKSLLRDT 225

Query: 256 AKYRPLMK--TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKR 303
           +++ P  K      + SLK LTR  L   IQ G H   ED  + M LYK+
Sbjct: 226 SRHLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLLYKK 275

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 105/191 (54%), Gaps = 16/191 (8%)

Query: 119 QKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQ 177
           QKK + ++++++   G  KA+A+DCEMVG G  G   + ARV +V++    ++  YV+P 
Sbjct: 234 QKKRTISLEKEQAFGGLTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPT 293

Query: 178 LPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE 237
            PVT+YR  V+G+  E++K     + VK ++ E+L              K R+LVGH L 
Sbjct: 294 EPVTDYRTAVSGIRPENLKQGEEFEVVKKEVAEML--------------KGRILVGHALH 339

Query: 238 HDLDSLRMNYPDHMLRDTAKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVS 296
           +DL  L +++P   +RDT K++P   +      SLK L+   LG  +Q   H   +D  +
Sbjct: 340 NDLKVLFLDHPKKKIRDTQKFKPFRSRVKSGRPSLKRLSEKILGIRVQQAEHCSIQDAQA 399

Query: 297 VMRLYKRFRRQ 307
            MRLY   +R+
Sbjct: 400 AMRLYVMVKRE 410

May function as an exonuclease.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 16/169 (9%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K +AMDCE VG G  G     ARV LV+   NV+   +V+P+  VT++R  V+G+T + +
Sbjct: 94  KYIAMDCEFVGVGPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHM 153

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
           KNA+  K+ + ++ +IL              K ++LVGH ++HDL++L +++P   + DT
Sbjct: 154 KNAVSFKQAQQQLSDIL--------------KDKILVGHAVKHDLEALMLSHPKSKVIDT 199

Query: 256 AKYRPLMK--TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 302
           A++ P  +      S SLK L +  L  DIQSG H   ED  + M +YK
Sbjct: 200 ARHLPFRQKYAKGKSPSLKKLAKEILNMDIQSGQHSSVEDARATMLIYK 248

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 17/168 (10%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           +A+A+DCEMVG G  G   + ARV +V++    ++  YV+P  PVT+YR  V+G+  E++
Sbjct: 242 RALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL 301

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
           K    L+ V+ ++ E+L              K R+LVGH L +DL  L +++P   +RDT
Sbjct: 302 KQGEELEVVQKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDT 347

Query: 256 AKYRPLMKTNLVS--HSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLY 301
            KY+P  K+ + S   SL+ L+   LG  +Q   H   +D  + MRLY
Sbjct: 348 QKYKPF-KSQVKSGRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLY 394

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 27/213 (12%)

Query: 104 SAPVPFEKTLSNAESQKKIS---------GAIDEKR--TCRGPKAVAMDCEMVGGGSNGT 152
           SA  P  KT+S+  S   IS           ++E R  T    K VAMDCEMVG G N  
Sbjct: 72  SAQEPMVKTISHKSSTATISEQSRTESKPTKVNEGRSPTAEIGKYVAMDCEMVGVGPNPD 131

Query: 153 LD-LCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI 211
            D   ARV +V+ +   ++ +YV+P+  +T++R  V+G++ + +  A  L++V+  + EI
Sbjct: 132 NDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMAEARSLEQVQKDVAEI 191

Query: 212 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMK-TNLVSHS 270
           L+               R+LVGH + +DLD+L + +P   +RDT+K+ P  K     S  
Sbjct: 192 LD--------------GRILVGHAVSNDLDALLLGHPKRDIRDTSKHPPYRKIAGGGSPR 237

Query: 271 LKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKR 303
           LK L   +LG +IQ G H   ED  + M LY+R
Sbjct: 238 LKILASEFLGLNIQDGAHSSVEDAKATMLLYRR 270

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1

 Score =  111 bits (278), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 15/171 (8%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K +A+DCEMVG G  G     ARV +VD     I+ +YV+P+  VTN+R  V+G++++ +
Sbjct: 132 KYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSM 191

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
           + A   +EV+ +I ++L              + R+LVGH L+HDL++L +++P   +RDT
Sbjct: 192 RFARDFEEVQAEIDKLL--------------RGRILVGHDLKHDLEALILSHPGKDIRDT 237

Query: 256 AKYRPLMK-TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFR 305
           AK+    K  N    SL+ L +  LG +IQ G H   ED  + M L+++ +
Sbjct: 238 AKFSGFKKYANGRKPSLRVLAQQLLGVEIQGGEHSSIEDARATMLLFRKHK 288

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2

 Score =  111 bits (277), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 17/184 (9%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           K +AMDCE VG G  GT    ARV +V+   + +F  +V+P+  VT++R  V+G+T + +
Sbjct: 98  KYLAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHM 157

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
             A+  +E +++  ++L              + R+LVGH + HDLD+L +++P   +RDT
Sbjct: 158 NEAISFQEAQNETSKLL--------------EGRILVGHAIHHDLDALFLSHPKSRIRDT 203

Query: 256 AKYRPLMKTNL-VSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEI 314
           ++Y+P    ++  + SLK L+  +L  DIQ   H   ED  + M L++  R++  Q   I
Sbjct: 204 SQYKPFRSISMGKTPSLKKLSSHFLKIDIQGSAHSSVEDARATMLLFRLHRKEFEQ--SI 261

Query: 315 GNQN 318
             QN
Sbjct: 262 RTQN 265

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 15/167 (8%)

Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           + VAMDCEMVG G +G   + ARV +V+     ++  YV+P   VT+YR  V+G+  ED+
Sbjct: 233 RTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDV 292

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
           K   P K V+ ++ EIL              + R LVGH + +DL  L +++P   +RDT
Sbjct: 293 KKGEPFKVVQKEVSEIL--------------RGRTLVGHAVHNDLKILFLDHPKKAIRDT 338

Query: 256 AKYRPL-MKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLY 301
            KY+P   K      SLK L    L   +Q+G H   +D  + MRLY
Sbjct: 339 QKYKPFKQKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLY 385

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6CMT3|REXO4_KLULA RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=REX4 PE=3 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 16/175 (9%)

Query: 130 RTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTG 189
           RT    K V+MDCE VG G +G     ARV +V+   NV+   +V+P+ PVT++R  V+G
Sbjct: 112 RTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSG 171

Query: 190 LTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD 249
           +    + NA+  ++ + ++  +L              K R+LVGH + HDL +L +++P 
Sbjct: 172 IKPHHMANAVTQEDCQKQVSNVL--------------KGRILVGHSVHHDLTALMLSHPR 217

Query: 250 HMLRDTAKYRPLMK--TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 302
            M+RDT+++ P  +  +   + SLK LT+  L  DIQ G H   ED  + M LYK
Sbjct: 218 RMIRDTSRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYK 272

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3 SV=1

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 93/171 (54%), Gaps = 15/171 (8%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
           +A+DCEMVG G NG  +  ARV +V+    VI  T+VQP+ PVT+YR  ++G+ + D+  
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192

Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 257
           A    EV  ++  +L++              ++L+GH +++DL  L + +P  + RDT K
Sbjct: 193 APQFDEVNKQVANLLHD--------------KILIGHAIDNDLKVLMLTHPGPLTRDTQK 238

Query: 258 YRPLMKTNLVSH-SLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 307
           Y+PL +        LK L+   LG  IQ+G H    D    M LY+  +++
Sbjct: 239 YKPLQEIAKNKRPGLKKLSELLLGVQIQTGAHSSVVDARVAMALYRLHKKE 289

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
359807091	366	uncharacterized protein LOC100788682 [Gl	1.0	0.964	0.674	1e-141
356556710	366	PREDICTED: RNA exonuclease 4-like [Glyci	1.0	0.964	0.674	1e-140
255567670	365	exonuclease, putative [Ricinus communis]	1.0	0.967	0.664	1e-139
357454687	366	RNA exonuclease [Medicago truncatula] gi	0.994	0.959	0.641	1e-133
388501576	366	unknown [Medicago truncatula]	0.994	0.959	0.638	1e-133
224068807	349	predicted protein [Populus trichocarpa]	0.960	0.971	0.655	1e-132
296086710	341	unnamed protein product [Vitis vinifera]	0.895	0.926	0.662	1e-123
449449811	350	PREDICTED: RNA exonuclease 4-like [Cucum	0.951	0.96	0.572	1e-115
225452464	395	PREDICTED: apoptosis-enhancing nuclease-	0.957	0.855	0.550	1e-110
147810158	351	hypothetical protein VITISV_036419 [Viti	0.957	0.962	0.550	1e-110

>gi|359807091|ref|NP_001241345.1| uncharacterized protein LOC100788682 [Glycine max] gi|255641871|gb|ACU21204.1| unknown [Glycine max]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/359 (67%), Positives = 287/359 (79%), Gaps = 6/359 (1%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD EA+ P+    RHKC+ACYKQ+K+K+HLIEHMK SYHSVHQP+C VCQK  KSFESLR
Sbjct: 1   MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV-PFEKTLSNAESQ 119
           EHLTGPL +  CS IFS +GC LC+ +FDSP SLI H+E C LSAP  P    L   +SQ
Sbjct: 61  EHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIGHRETCRLSAPTCPGTSALPYIDSQ 120

Query: 120 KKISGAIDEKRTCRGPK-AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQL 178
                + DE     GP  AVA+DCEMVGGGS+G+L+LCARVCLVDEDE +IFHTYVQP++
Sbjct: 121 FDCQDSSDENHAGEGPGGAVAIDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEI 180

Query: 179 PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH 238
           PVTNYRY++TGLTEE +KNA+PLK+V++K+L+IL NGES G++ LD GKARLLVGH L H
Sbjct: 181 PVTNYRYDITGLTEEHLKNAIPLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAH 240

Query: 239 DLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVM 298
           DLD L+MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG HDPYEDC+SVM
Sbjct: 241 DLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVM 300

Query: 299 RLYKRFRRQDHQVEEIG----NQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 353
           RLYKR R Q H  E+ G    + N  G  DS+  +EL+ ++P+ELY +S+SDY+CWCLD
Sbjct: 301 RLYKRIRSQLHPEEDHGTMTLSNNIVGMPDSWISRELDNLTPDELYAMSRSDYKCWCLD 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556710|ref|XP_003546666.1| PREDICTED: RNA exonuclease 4-like [Glycine max]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/359 (67%), Positives = 287/359 (79%), Gaps = 6/359 (1%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD EA+ P+    RHKC+ACYKQ+K+K+HLIEHMK SYHSVHQP+C VCQK  KSFESLR
Sbjct: 1   MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV-PFEKTLSNAESQ 119
           EHLTGPL +  CS IFS +GC LC+ +FDSP SLI H++ C +SAP  P    L   +SQ
Sbjct: 61  EHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIDHRKICRISAPTCPGTSALPYIDSQ 120

Query: 120 KKISGAIDEKRTCRGPK-AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQL 178
                  DE     GP  AVAMDCEMVGGGS+G+L+LCARVCLVDEDE +IFHTYVQP++
Sbjct: 121 FDCQDFSDENHAGEGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEI 180

Query: 179 PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH 238
           PVTNYRY++TGLTEE ++NAMPLKEV++K+L+IL+NGES G++ LD GKARLLVGH L H
Sbjct: 181 PVTNYRYDITGLTEEHLRNAMPLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAH 240

Query: 239 DLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVM 298
           DLD L+MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG HDPYEDC+SVM
Sbjct: 241 DLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVM 300

Query: 299 RLYKRFRRQDHQVEEIG----NQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 353
           RLYKR R Q H  E+ G    + N  G  DS+  +EL+ ++P+ELY +S+SDY+CWCLD
Sbjct: 301 RLYKRIRSQLHPEEDHGTMTLSNNIVGMPDSWISRELDNLTPDELYAMSRSDYKCWCLD 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567670|ref|XP_002524814.1| exonuclease, putative [Ricinus communis] gi|223535998|gb|EEF37657.1| exonuclease, putative [Ricinus communis]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/358 (66%), Positives = 291/358 (81%), Gaps = 5/358 (1%)

Query: 1   MDTEAELPKRS-TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESL 59
           M ++ ++P ++ T R+KC ACYKQ+K+K+HL+EHM ISYHSVHQP+CAVCQK  KSFESL
Sbjct: 1   MASKPDIPTKTPTTRYKCCACYKQYKKKEHLVEHMIISYHSVHQPRCAVCQKHCKSFESL 60

Query: 60  REHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK---TLSNA 116
           R HL GPL+KA+CS +FS  GC+LC+ +FDSP+SLI+H+E C LS P  F K    +  +
Sbjct: 61  RAHLQGPLAKANCSRVFSHLGCDLCLKVFDSPNSLIRHREMCCLSTPSSFVKLQICMLGS 120

Query: 117 ESQKKISGAIDEKRTCRGP-KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQ 175
                  G I       G  KA+A+DCEMVGGGS+GTL+LCARVCLVDEDEN+IFH YVQ
Sbjct: 121 NDNYIGGGVIGSNDNIGGDVKAIAIDCEMVGGGSDGTLNLCARVCLVDEDENIIFHAYVQ 180

Query: 176 PQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG 235
           PQ+P+T+YRYEVTGLTEE +++AMPLKEV++KILEIL NGES G+  L  GKARLLVGH 
Sbjct: 181 PQIPITDYRYEVTGLTEEHLRDAMPLKEVQNKILEILYNGESVGKARLSGGKARLLVGHS 240

Query: 236 LEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCV 295
           L+HDLD LRM YPDH+LRDTAKYRPLMKTNL SHSLKYLT+TYLGY+IQ+G+HDPYEDCV
Sbjct: 241 LDHDLDCLRMFYPDHLLRDTAKYRPLMKTNLFSHSLKYLTQTYLGYNIQTGIHDPYEDCV 300

Query: 296 SVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 353
           +VMRLYKR R QDH+VE+ G +  +GSFDS K KELE M+ +ELY IS+S+Y+CWCLD
Sbjct: 301 AVMRLYKRMRGQDHEVEQSGLRGISGSFDSLKPKELESMTSDELYDISRSNYKCWCLD 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454687|ref|XP_003597624.1| RNA exonuclease [Medicago truncatula] gi|358344695|ref|XP_003636423.1| RNA exonuclease [Medicago truncatula] gi|217072104|gb|ACJ84412.1| unknown [Medicago truncatula] gi|355486672|gb|AES67875.1| RNA exonuclease [Medicago truncatula] gi|355502358|gb|AES83561.1| RNA exonuclease [Medicago truncatula] gi|388504350|gb|AFK40241.1| unknown [Medicago truncatula]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/360 (64%), Positives = 281/360 (78%), Gaps = 9/360 (2%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD E + P+  T RHKC ACYKQ+K+K++L+EHMK +YHS+HQPKC VC+K  KSFESLR
Sbjct: 1   MDNEEDPPEPPTKRHKCSACYKQYKKKEYLVEHMKTAYHSIHQPKCVVCEKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPF-EKTLSNAESQ 119
           EHLTGPL+K  CS +FS  GC LC+  FDS +SL  H+E C L+APVP            
Sbjct: 61  EHLTGPLAKGLCSAVFSQYGCQLCLTRFDSHASLSDHRETCRLAAPVPLGTNEFPCTNIH 120

Query: 120 KKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 179
                + DE      P+A+AMDCEMVGGGS+G+L+LCARVCLVDEDEN+IFHTYV+PQ+P
Sbjct: 121 NNFLDSSDENDADCLPRAIAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIP 180

Query: 180 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 239
           VTNYRY++TGLTEE +++ MPLKEV++KIL+IL NGES G++ LD GKARLLVGH L HD
Sbjct: 181 VTNYRYDITGLTEEHLQDGMPLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHD 240

Query: 240 LDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMR 299
           LD L M+YPDH++RDTAKYRPLMKTNLV +SLKYLTRTYLGYDIQ+G H+PYEDC+SVMR
Sbjct: 241 LDCLGMSYPDHLMRDTAKYRPLMKTNLVCYSLKYLTRTYLGYDIQTGTHNPYEDCISVMR 300

Query: 300 LYKRFRRQDHQVEEIGNQNTTGS------FDSYKYKELEKMSPNELYQISKSDYRCWCLD 353
           LYKR R Q H+  E G +  T S      FDS++ KEL+ ++P+ELY ISKSDYRCWCLD
Sbjct: 301 LYKRIRGQSHK--EKGYRTLTPSDNILDMFDSWRSKELDNLTPDELYAISKSDYRCWCLD 358

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501576|gb|AFK38854.1| unknown [Medicago truncatula]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/360 (63%), Positives = 280/360 (77%), Gaps = 9/360 (2%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD E + P+  T RHKC ACYKQ+K+K++L+EHMK +YHS+HQPKC VC+K  KSFESLR
Sbjct: 1   MDNEEDPPEPPTKRHKCSACYKQYKKKEYLVEHMKTAYHSIHQPKCVVCEKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPF-EKTLSNAESQ 119
           EHLTGPL+K  CS +FS  GC LC+  FDS +SL  H+E C L+APVP            
Sbjct: 61  EHLTGPLAKGLCSAVFSQYGCQLCLTRFDSHASLSDHRETCRLAAPVPLGTNEFPCTNIH 120

Query: 120 KKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 179
                + DE      P+A+AMDCEMVGGGS+G+L+LCARVCLVDEDEN+IFHTYV+PQ+P
Sbjct: 121 NNFLDSSDENDADCLPRAIAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIP 180

Query: 180 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 239
           VTNYRY++TGLTEE +++ MPLKEV++KIL+IL NGES G++ LD GKARLLVGH L HD
Sbjct: 181 VTNYRYDITGLTEEHLQDGMPLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHD 240

Query: 240 LDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMR 299
           LD L M+YPDH++RDTAKYRPLMKTNLV +SLKYLTRTYLGYDIQ+G H+PYEDC+ VMR
Sbjct: 241 LDCLGMSYPDHLMRDTAKYRPLMKTNLVCYSLKYLTRTYLGYDIQTGTHNPYEDCIPVMR 300

Query: 300 LYKRFRRQDHQVEEIGNQNTTGS------FDSYKYKELEKMSPNELYQISKSDYRCWCLD 353
           LYKR R Q H+  E G +  T S      FDS++ KEL+ ++P+ELY ISKSDYRCWCLD
Sbjct: 301 LYKRIRGQSHK--EKGYRTLTPSDNILDMFDSWRSKELDNLTPDELYAISKSDYRCWCLD 358

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068807|ref|XP_002302830.1| predicted protein [Populus trichocarpa] gi|222844556|gb|EEE82103.1| predicted protein [Populus trichocarpa]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/354 (65%), Positives = 277/354 (78%), Gaps = 15/354 (4%)

Query: 1   MDTEAELPKRS-TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESL 59
           MD EA+ P RS T RHKC ACYKQFK+K+HL+EHMKISYH+ HQPKC VCQK  KSFESL
Sbjct: 1   MDAEADPPTRSRTERHKCFACYKQFKKKEHLVEHMKISYHTPHQPKCGVCQKHCKSFESL 60

Query: 60  REHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQ 119
           R HLTGPLS+A CS  FS +GC+LC+ ++DSPSSL KH+E C LSAP      +      
Sbjct: 61  RNHLTGPLSRAGCSRTFSAQGCDLCLKLYDSPSSLGKHREICHLSAPASLGTKI------ 114

Query: 120 KKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 179
              +G++D K T +G KA+A++C +VGGG++G+LDLCARVCLVDEDEN+IFHTYVQPQ  
Sbjct: 115 LPFAGSVDVKYTTKGAKAIAINCGLVGGGTDGSLDLCARVCLVDEDENIIFHTYVQPQSA 174

Query: 180 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 239
           VT+YRYE+TGLTEE ++N+   KEV+D+ILEIL NGES  RLM D GKARLLVGH L+  
Sbjct: 175 VTDYRYEITGLTEEHLRNSKSHKEVQDRILEILYNGESARRLMSDSGKARLLVGHDLKRG 234

Query: 240 LDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMR 299
           LD LR+NYP H+LRDTAKYRPL+KTNLVSHSLK        YDIQ+G HDPY DCVSVMR
Sbjct: 235 LDCLRINYPGHLLRDTAKYRPLLKTNLVSHSLK--------YDIQTGEHDPYVDCVSVMR 286

Query: 300 LYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 353
           LYKR R QDHQ + IG  ++   F+S K +ELE M+P+ELYQISKSDY+CWCLD
Sbjct: 287 LYKRMRAQDHQGKGIGTPDSDSGFESQKAEELENMTPDELYQISKSDYKCWCLD 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086710|emb|CBI32345.3| unnamed protein product [Vitis vinifera]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/317 (66%), Positives = 256/317 (80%), Gaps = 1/317 (0%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           M +EA   +  T R+KC+AC++Q+K+K+HL+EHM++SYHSVHQPKC VCQK  KSF+SLR
Sbjct: 1   MGSEAVPSESRTTRYKCLACFRQYKKKEHLVEHMRVSYHSVHQPKCGVCQKQFKSFQSLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT-LSNAESQ 119
           EHLTG L K +C  IFS++GCN C+ IF +  SL +HKE C L  PV  EK  + + ESQ
Sbjct: 61  EHLTGNLPKKNCLKIFSEQGCNYCLKIFKNADSLSEHKEMCQLPVPVTIEKIRMPSTESQ 120

Query: 120 KKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 179
              S +I+   T RG +A+A+DCE VGGGS+G+LDLCARVCL+DEDEN+IFHTYVQPQ+P
Sbjct: 121 IDFSDSINRDHTSRGLEAIAIDCEKVGGGSDGSLDLCARVCLIDEDENIIFHTYVQPQIP 180

Query: 180 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 239
           VTNYRYE+TG+TE  +++AMPLKEV++K++E+L NGES GRL LD GK RLLVGH L HD
Sbjct: 181 VTNYRYELTGITEAHLRDAMPLKEVREKVMEVLRNGESIGRLRLDGGKGRLLVGHDLRHD 240

Query: 240 LDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMR 299
           LD LRM+YPDH+LRDTAKY PLMKTNLVS SLK LT+ YLGYDIQSG+HDPYEDCVSVMR
Sbjct: 241 LDCLRMHYPDHLLRDTAKYLPLMKTNLVSFSLKSLTQKYLGYDIQSGMHDPYEDCVSVMR 300

Query: 300 LYKRFRRQDHQVEEIGN 316
           LYKR + QDH  E IG 
Sbjct: 301 LYKRMQSQDHSDEGIGT 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449811|ref|XP_004142658.1| PREDICTED: RNA exonuclease 4-like [Cucumis sativus] gi|449507969|ref|XP_004163181.1| PREDICTED: RNA exonuclease 4-like [Cucumis sativus]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/360 (57%), Positives = 265/360 (73%), Gaps = 24/360 (6%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD++ +  K  + RHKC ACYKQ+K+K+HLIEHM++SYHSVHQP+C VC K  KSFESLR
Sbjct: 1   MDSDHDPLKTPSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQK 120
           EHL              ++GC LC+ + D P SL  H++ C ++APV    +L   +   
Sbjct: 61  EHLM-------------EQGCGLCLRVLDGPESLSDHQDICCITAPVHQGTSLPPTD--- 104

Query: 121 KISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPV 180
            +S   +E R+ RG  A+A+DC M GGGS+G LD+C  +CLVDEDE +IF+T+VQPQ+P+
Sbjct: 105 -LSDCYEEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFNTFVQPQIPI 163

Query: 181 TNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDL 240
           TNYR+EVTGL EE ++ AMPLK V++K+L++L NGES GRL L+ GKA+LLVGH LEHDL
Sbjct: 164 TNYRHEVTGLKEEHMRYAMPLKNVQEKVLKLLLNGESIGRLRLNGGKAKLLVGHDLEHDL 223

Query: 241 DSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRL 300
           D LR+NYPDHMLRDTA+Y PLMKTNLVSHSLKYLTR YLGYDI+   HDPYE+CVSVMRL
Sbjct: 224 DCLRLNYPDHMLRDTARYHPLMKTNLVSHSLKYLTRAYLGYDIRQDGHDPYENCVSVMRL 283

Query: 301 YKRFRRQDH--QVEEIG-----NQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 353
           YKR R  DH  QV  +       Q    + DS+  K+LEKM+P+ELY++S+S+++CWC D
Sbjct: 284 YKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHD 343

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452464|ref|XP_002274475.1| PREDICTED: apoptosis-enhancing nuclease-like [Vitis vinifera]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/345 (55%), Positives = 250/345 (72%), Gaps = 7/345 (2%)

Query: 12  TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAH 71
           + R+KC ACY+QF R +HL++HM+ SYHSVH+P C +C+K  +SFESLREHL GPL K  
Sbjct: 50  SQRNKCAACYRQFNRLEHLVDHMRTSYHSVHEPTCGICKKHCRSFESLREHLIGPLPKVE 109

Query: 72  CSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRT 131
           C+ IFS RGCNLC++I  SP++L  H+  C LS       T +       +    D    
Sbjct: 110 CARIFSVRGCNLCLDILGSPNALRAHRGTCQLSR----GNTGALLSRMANLGIQDDLNSR 165

Query: 132 CRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLT 191
            RG K VA+ C+MVGGG++G+LDLCARVCL+DE EN+IFHTYV+PQ+PVTNYRYE TG  
Sbjct: 166 TRGSKVVALGCKMVGGGTDGSLDLCARVCLIDEYENIIFHTYVKPQIPVTNYRYETTGTR 225

Query: 192 EEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM 251
            E +++AMP+K+V+ KI + L NGE   ++    GKAR+LVGHGL+HDLD L+M YP  M
Sbjct: 226 PEFLRDAMPVKQVQRKIQDFLCNGEPIWKIRSRGGKARILVGHGLDHDLDCLQMEYPTLM 285

Query: 252 LRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQV 311
           +RDTAKY PLMKT+ +S+SLKYLT+ YLGYDIQ+G+ DPYEDCV+ MRLY R R Q H++
Sbjct: 286 IRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYEDCVATMRLYMRMRSQSHKI 345

Query: 312 EE---IGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 353
           E+     +     +F S +  ELE+M+P+E+ +IS+SDY CWCLD
Sbjct: 346 EDYPLASDPQNRNNFASGRQSELERMTPDEMLEISRSDYYCWCLD 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810158|emb|CAN71456.1| hypothetical protein VITISV_036419 [Vitis vinifera]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/345 (55%), Positives = 250/345 (72%), Gaps = 7/345 (2%)

Query: 12  TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAH 71
           + R+KC ACY+QF R +HL++HM+ SYHSVH+P C +C+K  +SFESLREHL GPL K  
Sbjct: 6   SQRNKCAACYRQFNRLEHLVDHMRTSYHSVHEPTCGICKKHCRSFESLREHLIGPLPKVE 65

Query: 72  CSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRT 131
           C+ IFS RGCNLC++I  SP++L  H+  C LS       T +       +    D    
Sbjct: 66  CARIFSVRGCNLCLDILGSPNALRAHRGTCQLSR----GNTGALLSRMANLGIQDDLNSR 121

Query: 132 CRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLT 191
            RG K VA+ C+MVGGG++G+LDLCARVCL+DE EN+IFHTYV+PQ+PVTNYRYE TG  
Sbjct: 122 TRGSKVVALGCKMVGGGTDGSLDLCARVCLIDEYENIIFHTYVKPQIPVTNYRYETTGTR 181

Query: 192 EEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM 251
            E +++AMP+K+V+ KI + L NGE   ++    GKAR+LVGHGL+HDLD L+M YP  M
Sbjct: 182 PEFLRDAMPVKQVQRKIQDFLCNGEPIWKIRSRGGKARILVGHGLDHDLDCLQMEYPTLM 241

Query: 252 LRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQV 311
           +RDTAKY PLMKT+ +S+SLKYLT+ YLGYDIQ+G+ DPYEDCV+ MRLY R R Q H++
Sbjct: 242 IRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYEDCVATMRLYMRMRSQSHKI 301

Query: 312 EE---IGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 353
           E+     +     +F S +  ELE+M+P+E+ +IS+SDY CWCLD
Sbjct: 302 EDYPLASDPQNRNNFASGRQSELERMTPDEMLEISRSDYYCWCLD 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2086839	357	AT3G27970 [Arabidopsis thalian	0.991	0.980	0.537	4.7e-103
TAIR|locus:2066406	344	AT2G48100 [Arabidopsis thalian	0.946	0.970	0.553	4.2e-102
TAIR|locus:2170533	348	AT5G40310 [Arabidopsis thalian	0.963	0.977	0.530	4.4e-100
FB|FBgn0036405	290	CG6833 [Drosophila melanogaste	0.456	0.555	0.372	1.4e-25
ZFIN|ZDB-GENE-120215-216	418	si:ch73-209e20.4 "si:ch73-209e	0.447	0.377	0.381	7.7e-25
MGI|MGI:2684957	432	Rexo4 "REX4, RNA exonuclease 4	0.495	0.405	0.340	4.6e-23
TAIR|locus:2086320	275	AT3G15080 [Arabidopsis thalian	0.541	0.694	0.322	6.1e-23
UNIPROTKB|Q9GZR2	422	REXO4 "RNA exonuclease 4" [Hom	0.498	0.417	0.329	1.1e-22
SGD|S000005440	289	REX4 "Putative RNA exonuclease	0.458	0.560	0.353	1.3e-22
ASPGD|ASPL0000065793	299	AN10955 [Emericella nidulans (	0.495	0.585	0.336	2.6e-22

TAIR|locus:2086839 AT3G27970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1021 (364.5 bits), Expect = 4.7e-103, P = 4.7e-103
 Identities = 192/357 (53%), Positives = 249/357 (69%)

Query:     1 MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
             MD  + +    T R+KC ACY+QF + +HL+EHMKISYHS H+P C VC+K  +SFESLR
Sbjct:     1 MDYRSSMESSETLRNKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLR 60

Query:    61 EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQK 120
             EHL GPL K  C  IFS RGC  CM I +SP+S   H+E C  S+ V    T   A    
Sbjct:    61 EHLIGPLPKQECKNIFSLRGCRFCMTILESPNSRRIHQERCQFSS-VNSGLTTRMAALGL 119

Query:   121 KISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPV 180
             +    ID   + R P+ VA+ C+MVGGGS+G+LDLCARVC+ DE +NVIFHTYV+P + V
Sbjct:   120 RDKAMIDYTSS-RSPRVVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAV 178

Query:   181 TNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDL 240
             T+YRYE TG+  E++++AMPLK+V+ KI E L NGE   ++    GKAR+LVGHGL+HDL
Sbjct:   179 TSYRYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDL 238

Query:   241 DSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRL 300
             D L++ YP  M+RDTAKY PLMKT+ +S+SLKYLT+ YLGYD+  G+ DPYEDCV+ MRL
Sbjct:   239 DRLQLEYPSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRL 298

Query:   301 YKRFRRQDHQVEEI----GNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 353
             Y R R Q H++E        QN +    +++  E E+MSP+E+  IS+SDY CWCLD
Sbjct:   299 YTRMRYQKHKIEAYPLAADAQNRSNQV-AWRQSEAERMSPDEMLSISRSDYYCWCLD 354

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2066406 AT2G48100 [Arabidopsis thaliana (taxid:3702)]

 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 198/358 (55%), Positives = 250/358 (69%)

Query:     1 MDTEAELPKRS--TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFES 58
             MD++    KR   + RH+CVACYK F R++HL+EHMKISYHS+HQP+C VC K  KSFES
Sbjct:     1 MDSQLNPSKRRKISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFES 60

Query:    59 LREHLTGP--LSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNA 116
             +REHL  P  LSK +C  IF+ RGC LC+ IF+   +L +HK  C LS P P        
Sbjct:    61 VREHLNVPDHLSKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRPL-----GT 115

Query:   117 ESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQP 176
              +Q+  S ++   R     KA+A+DCEMVGGG++GT+D CA VCLVD+DENVIF T+VQP
Sbjct:   116 STQRNPSSSLAGSRL----KAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQP 171

Query:   177 QLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLL-VGHG 235
              LPVT+YR+E+TGLT+ED+K+ MPL+ V++++   L  G++       DG  RLL VGH 
Sbjct:   172 LLPVTDYRHEITGLTKEDLKDGMPLEHVRERVFSFLCGGQN-------DGAGRLLLVGHD 224

Query:   236 LEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCV 295
             L HD+  L++ YP H+LRDTAKY PLMKTNLVS SLKYLT++YLGY IQ G H+ YEDCV
Sbjct:   225 LRHDMSCLKLEYPSHLLRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCV 284

Query:   296 SVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 353
             S MRLYKR R Q+H     G     G  +S K  +LEKM+  ELYQ S S+YRCWCLD
Sbjct:   285 SAMRLYKRMRDQEHVCS--GKAEGNG-LNSRKQSDLEKMNAEELYQKSTSEYRCWCLD 339

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

TAIR|locus:2170533 AT5G40310 [Arabidopsis thaliana (taxid:3702)]

 Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
 Identities = 183/345 (53%), Positives = 245/345 (71%)

Query:    12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAH 71
             T R+KC  CY+QF +K+HL+EHM+ISYHSVH+P C +C K  +SF+SLREHL GPL K  
Sbjct:     3 TCRNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHLIGPLPKQE 62

Query:    72 CSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRT 131
             C  IFS RGC  C+ I +SP++   H+E C LS  V     +  A    + +  ID   +
Sbjct:    63 CKNIFSIRGCRFCLTILESPNARRIHQERCQLSN-VTSGLMIRMAALGLRNNSTIDYTSS 121

Query:   132 CRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLT 191
              R P+ VA+ C+MVGGGS+G+LDLCARVC+ DE ENV+FHTYV+P +PVTNYRYE+TG+ 
Sbjct:   122 -RSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIR 180

Query:   192 EEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM 251
              E++++AM LK  + K+ E L NGE   ++   +GKAR+LVGHGL++ LDSL++ Y   M
Sbjct:   181 PENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSM 240

Query:   252 LRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQV 311
             +RDTA+Y PLMK++ +S+SLKYLT+ YLGYDI  G+ DPYEDCV+ MRLY R R Q H+ 
Sbjct:   241 IRDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRMRYQKHRA 300

Query:   312 EEIGNQNTT---GSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 353
             E     + T    +F +++  ELE+MSP EL  +S+SDY CWCLD
Sbjct:   301 EAYPLASDTQNHNNFAAWRQNELERMSPEELLDLSRSDYYCWCLD 345

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0036405 CG6833 [Drosophila melanogaster (taxid:7227)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 66/177 (37%), Positives = 104/177 (58%)

Query:   129 KRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVT 188
             K+     + +AMDCEMVG G N   D+ ARV +V+   +V+   YV+P+  VT+YR  V+
Sbjct:   109 KKKAHRNRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLLDKYVKPRKEVTDYRTSVS 168

Query:   189 GLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP 248
             G+  +DI N      V+++++++++               R+LVGHGL +DL  L + +P
Sbjct:   169 GIRPQDIANGEDFAAVQNEVMKLIHG--------------RILVGHGLRNDLAVLGIRHP 214

Query:   249 DHMLRDTAKYRPLMK--TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKR 303
              H +RDT+ Y+PL K  +N  + SLK LT+  LG +IQ+G H+  ED  + M +Y R
Sbjct:   215 FHDIRDTSHYKPLCKLISNTHTPSLKRLTKAVLGQEIQTGEHNSVEDARAAMGIYNR 271

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-120215-216 si:ch73-209e20.4 "si:ch73-209e20.4" [Danio rerio (taxid:7955)]

 Score = 283 (104.7 bits), Expect = 7.7e-25, P = 7.7e-25
 Identities = 66/173 (38%), Positives = 95/173 (54%)

Query:   136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
             +AVAMDCEMVG G  G   + ARV LV+     I+  YV+P   VT+YR  V+G+  +DI
Sbjct:   232 RAVAMDCEMVGVGYKGEDSILARVSLVNHFGKCIYDKYVKPTEKVTDYRTAVSGIRPDDI 291

Query:   196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
             KN   +K V+ ++ +IL              K R+LVGH + +DL  L +++P  M+RDT
Sbjct:   292 KNGEDIKTVQKEVAQIL--------------KGRILVGHAIHNDLKILLLDHPKKMIRDT 337

Query:   256 AKYRPL-MKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 307
              +Y+P   K      +L+ L R  L   +Q G H   +D  + MRLY   R+Q
Sbjct:   338 QRYKPFRQKVKSSRPALRNLCRQILNVQVQQGEHSSVQDAQATMRLYTMVRKQ 390

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

MGI|MGI:2684957 Rexo4 "REX4, RNA exonuclease 4 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 269 (99.8 bits), Expect = 4.6e-23, P = 4.6e-23
 Identities = 65/191 (34%), Positives = 105/191 (54%)

Query:   119 QKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQ 177
             QKK + ++++++   G  KA+A+DCEMVG G  G   + ARV +V++    ++  YV+P 
Sbjct:   234 QKKRTISLEKEQAFGGLTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPT 293

Query:   178 LPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE 237
              PVT+YR  V+G+  E++K     + VK ++ E+L              K R+LVGH L 
Sbjct:   294 EPVTDYRTAVSGIRPENLKQGEEFEVVKKEVAEML--------------KGRILVGHALH 339

Query:   238 HDLDSLRMNYPDHMLRDTAKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVS 296
             +DL  L +++P   +RDT K++P   +      SLK L+   LG  +Q   H   +D  +
Sbjct:   340 NDLKVLFLDHPKKKIRDTQKFKPFRSRVKSGRPSLKRLSEKILGIRVQQAEHCSIQDAQA 399

Query:   297 VMRLYKRFRRQ 307
              MRLY   +R+
Sbjct:   400 AMRLYVMVKRE 410

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

TAIR|locus:2086320 AT3G15080 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 71/220 (32%), Positives = 114/220 (51%)

Query:    89 DSPSSLI-KHKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGG 147
             ++PSS++ K KE       VP    L+       ++   DE         VAMDCEMVG 
Sbjct:    46 ENPSSILGKRKERPDSEVDVPKINPLAPVNDDSSLT---DE---------VAMDCEMVGV 93

Query:   148 GSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDK 207
              S GT     RV LV++  NV++  +V+P   V ++R  ++G+   D++ A   +  + K
Sbjct:    94 -SQGTKSALGRVTLVNKWGNVLYDEFVRPVEHVVDFRTSISGIRPRDLRKAKDFRVAQTK 152

Query:   208 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLV 267
             + E++              K ++LVGH L +DL +L + +P   +RDT +Y+P +K    
Sbjct:   153 VAELI--------------KGKILVGHALHNDLKALLLTHPKKDIRDTGEYQPFLKGK-T 197

Query:   268 SHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 307
               SLK+L    LG DIQ+G H P +D  + M LY++ R++
Sbjct:   198 RKSLKHLASEILGADIQNGEHCPIDDARAAMMLYQKNRKE 237

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

UNIPROTKB|Q9GZR2 REXO4 "RNA exonuclease 4" [Homo sapiens (taxid:9606)]

 Score = 265 (98.3 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 64/194 (32%), Positives = 109/194 (56%)

Query:   117 ESQKKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQ 175
             +S+  +S ++ +++   G  +A+A+DCEMVG G  G   + ARV +V++    ++  YV+
Sbjct:   222 QSEGSVSLSLVKEQAFGGLTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVK 281

Query:   176 PQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG 235
             P  PVT+YR  V+G+  E++K    L+ V+ ++ E+L              K R+LVGH 
Sbjct:   282 PTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEML--------------KGRILVGHA 327

Query:   236 LEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSH--SLKYLTRTYLGYDIQSGVHDPYED 293
             L +DL  L +++P   +RDT KY+P  K+ + S   SL+ L+   LG  +Q   H   +D
Sbjct:   328 LHNDLKVLFLDHPKKKIRDTQKYKPF-KSQVKSGRPSLRLLSEKILGLQVQQAEHCSIQD 386

Query:   294 CVSVMRLYKRFRRQ 307
               + MRLY   +++
Sbjct:   387 AQAAMRLYVMVKKE 400

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

SGD|S000005440 REX4 "Putative RNA exonuclease possibly involved in ribosome biogenesis" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 63/178 (35%), Positives = 97/178 (54%)

Query:   136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
             K +AMDCE VG G  G     AR+ +V+   +V+   +V+P+  V  +R  V+G+  E +
Sbjct:   120 KYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHM 179

Query:   196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
             KNA+  KE + K  +IL              + R+LVGH L+HDL++L +++P  +LRDT
Sbjct:   180 KNAITFKEAQKKTADIL--------------EGRILVGHALKHDLEALMLSHPKSLLRDT 225

Query:   256 AKYRPLMKTNLVSH--SLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQV 311
             +++ P  K        SLK LTR  L   IQ G H   ED  + M LYK+ + +  ++
Sbjct:   226 SRHLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKTEFEKI 283

GO:0005622 "intracellular" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA;IGI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0008408 "3'-5' exonuclease activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0090305 "nucleic acid phosphodiester bond hydrolysis" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000027 "ribosomal large subunit assembly" evidence=IGI

ASPGD|ASPL0000065793 AN10955 [Emericella nidulans (taxid:162425)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 66/196 (33%), Positives = 108/196 (55%)

Query:   115 NAESQKKISGAIDEKRTCRGP-----KAVAMDCEMVGGGSNGTLDLC-ARVCLVDEDENV 168
             NA + +  +  +  +   R P     K +AMDCEMVG G +   D   ARV +V+ + + 
Sbjct:    77 NASANETSNAVVSRENEGRSPNVEIGKYIAMDCEMVGIGPDPDNDSALARVSIVNYNGDQ 136

Query:   169 IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKA 228
             ++ +YV+P+  VT++R  V+G+  + +  A  L++V+ ++ EIL              + 
Sbjct:   137 VYDSYVRPKEMVTDWRTHVSGILPKHMAEARSLEQVQKEVAEIL--------------EG 182

Query:   229 RLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKT-NLVSHSLKYLTRTYLGYDIQSGV 287
             R+LVGH L +DLD+L +++P   +RDT+K+ P  K     S  LK L   +LG +IQ+G 
Sbjct:   183 RILVGHALRNDLDALLLSHPKRDIRDTSKHPPYRKVAGGGSPRLKILASEFLGLNIQAGA 242

Query:   288 HDPYEDCVSVMRLYKR 303
             H   ED  + M LY+R
Sbjct:   243 HSSMEDAKATMLLYRR 258

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000027 "ribosomal large subunit assembly" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00001978 hypothetical protein (349 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
cd06144	152	cd06144, REX4_like, DEDDh 3'-5' exonuclease domain	3e-78
smart00479	169	smart00479, EXOIII, exonuclease domain in DNA-poly	8e-35
cd06145	150	cd06145, REX1_like, DEDDh 3'-5' exonuclease domain	8e-33
cd06149	157	cd06149, ISG20, DEDDh 3'-5' exonuclease domain of	3e-32
cd06137	161	cd06137, DEDDh_RNase, DEDDh 3'-5' exonuclease doma	3e-22
pfam00929	161	pfam00929, RNase_T, Exonuclease	8e-21
cd06127	159	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain fam	8e-13
cd06143	174	cd06143, PAN2_exo, DEDDh 3'-5' exonuclease domain	1e-09
TIGR01405	1213	TIGR01405, polC_Gram_pos, DNA polymerase III, alph	2e-07
COG0847	243	COG0847, DnaQ, DNA polymerase III, epsilon subunit	1e-06
COG2176	1444	COG2176, PolC, DNA polymerase III, alpha subunit (	3e-06
cd06133	176	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonucleas	4e-06
PRK00448	1437	PRK00448, polC, DNA polymerase III PolC; Validated	8e-05
PRK07740	244	PRK07740, PRK07740, hypothetical protein; Provisio	1e-04
cd06131	167	cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-	0.001
TIGR01406	225	TIGR01406, dnaQ_proteo, DNA polymerase III, epsilo	0.002

>gnl|CDD|99847 cd06144, REX4_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

 Score =  236 bits (604), Expect = 3e-78
 Identities = 75/166 (45%), Positives = 106/166 (63%), Gaps = 15/166 (9%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
           VA+DCEMVG G +G+    ARV +V+ED NV++ TYV+PQ PVT+YR  V+G+  E +K+
Sbjct: 1   VALDCEMVGVGPDGSESALARVSIVNEDGNVVYDTYVKPQEPVTDYRTAVSGIRPEHLKD 60

Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 257
           A   +EV+ K+ E+L                R+LVGH L++DL  L++++P  ++RDT+K
Sbjct: 61  APDFEEVQKKVAELLKG--------------RILVGHALKNDLKVLKLDHPKKLIRDTSK 106

Query: 258 YRPLMKTNL-VSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 302
           Y+PL KT    S SLK L +  LG DIQ G H   ED  + MRLY+
Sbjct: 107 YKPLRKTAKGKSPSLKKLAKQLLGLDIQEGEHSSVEDARAAMRLYR 152

This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherchia coli RNase T. Length = 152

>gnl|CDD|214685 smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases

 Score =  125 bits (315), Expect = 8e-35
 Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 27/181 (14%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDED---ENVIFHTYVQPQLPVTNYRYEVTGLTEED 194
           V +DCE  G       D    +  VD D      +F TYV+P  P+T+Y  E+ G+T E 
Sbjct: 3   VVIDCETTGLDPGK--DEIIEIAAVDVDGGEIIEVFDTYVKPDRPITDYATEIHGITPEM 60

Query: 195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------ 248
           + +A   +EV +++LE L                 L+ G+    DL  L++ +P      
Sbjct: 61  LDDAPTFEEVLEELLEFLRGRI-------------LVAGNSAHFDLRFLKLEHPRLGIKQ 107

Query: 249 --DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRR 306
                + DT K        L  +SLK L +  L   IQ   H   +D  +  +L+K+   
Sbjct: 108 PPKLPVIDTLKLARATNPGLPKYSLKKLAKRLLLEVIQRA-HRALDDARATAKLFKKLLE 166

Query: 307 Q 307
           +
Sbjct: 167 R 167

Length = 169

>gnl|CDD|99848 cd06145, REX1_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins

 Score =  119 bits (300), Expect = 8e-33
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 43/179 (24%)

Query: 138 VAMDCEMV--GGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
            A+DCEM     G    L+L  RV +VDE+  V+    V+P   + +Y    +G+TEE +
Sbjct: 1   FALDCEMCYTTDG----LEL-TRVTVVDENGKVVLDELVKPDGEIVDYNTRFSGITEEML 55

Query: 196 KNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRD 254
           +N    L++V+ K+L +++                +LVGH LE+DL +L++     ++ D
Sbjct: 56  ENVTTTLEDVQKKLLSLISPDT-------------ILVGHSLENDLKALKL-IHPRVI-D 100

Query: 255 TA---------KYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYK 302
           TA          Y+P         SLK L + YLG DIQ G   HD  ED  + + L K
Sbjct: 101 TAILFPHPRGPPYKP---------SLKNLAKKYLGRDIQQGEGGHDSVEDARAALELVK 150

This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T. Length = 150

>gnl|CDD|99852 cd06149, ISG20, DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins

 Score =  117 bits (296), Expect = 3e-32
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 20/171 (11%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
           VA+DCEMVG G  G     AR  +V+   +V++  Y++P+ PVT+YR   +G+  + + N
Sbjct: 1   VAIDCEMVGTGPGGRESELARCSIVNYHGDVLYDKYIRPEGPVTDYRTRWSGIRRQHLVN 60

Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 257
           A P    + +IL+IL              K +++VGH + +D  +L+  +P HM RDT+ 
Sbjct: 61  ATPFAVAQKEILKIL--------------KGKVVVGHAIHNDFKALKYFHPKHMTRDTST 106

Query: 258 YRPLMKTNLVSH----SLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYK 302
              L +          SLK L +  L  DIQ G   H   ED  + M LYK
Sbjct: 107 IPLLNRKAGFPENCRVSLKVLAKRLLHRDIQVGRQGHSSVEDARATMELYK 157

Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and replication. It may carry out its function by degrading viral RNAs as part of the IFN-regulated antiviral response. Length = 157

>gnl|CDD|99840 cd06137, DEDDh_RNase, DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins

 Score = 91.2 bits (227), Expect = 3e-22
 Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 28/176 (15%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIK 196
           VA+DCEMVG           R+  VD     V+  + V+P + VT++R   +G+T  D++
Sbjct: 1   VALDCEMVG--LADGDSEVVRISAVDVLTGEVLIDSLVRPSVRVTDWRTRFSGVTPADLE 58

Query: 197 NAMPLKEVKDKILEILNNGESTGRLMLDD--GKARLLVGHGLEHDLDSLRMNYPDH---- 250
            A    +    I      G    R  L        +LVGH L++DLD+LRM    H    
Sbjct: 59  EA---AKAGKTI-----FGWEAARAALWKFIDPDTILVGHSLQNDLDALRM---IHTRVV 107

Query: 251 ---MLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG--VHDPYEDCVSVMRLY 301
              +L   A   PL K      SL+ L R +LG  IQ G   HD  ED ++   + 
Sbjct: 108 DTAILTREAVKGPLAKRQW---SLRTLCRDFLGLKIQGGGEGHDSLEDALAAREVV 160

This group is composed of eukaryotic exoribonucleases that include PAN2, RNA exonuclease 1 (REX1 or Rex1p), REX3 (Rex3p), REX4 (or Rex4p), ISG20, and similar proteins. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. REX proteins are required for the processing and maturation of many RNA species, and ISG20 is an interferon-induced antiviral exonuclease with a strong preference for single-stranded RNA. Length = 161

>gnl|CDD|216200 pfam00929, RNase_T, Exonuclease

 Score = 87.4 bits (217), Expect = 8e-21
 Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 13/169 (7%)

Query: 138 VAMDCEMVGGGSNGT--LDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           V +DCE  G        +++ A   +  E+   +F TYV+P+  +T+   E  G+T E +
Sbjct: 1   VVIDCETTGLDPEKDEIIEIAAVSIVGGENIGPVFDTYVKPERLITDEATEFHGITPEML 60

Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
           +NA   +EV +  LE L         +L    A   VG  L  DL  L++  P   L D 
Sbjct: 61  RNAPSFEEVLEAFLEFLK-----KLKILVGHNASFDVGFLLYDDLRFLKLPMP--KLNDV 113

Query: 256 AKYRPLMK---TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLY 301
                L K         SL  L        IQ   H   +D  +   L+
Sbjct: 114 IDTLILDKATYKGFKRRSLDALAEKLGLEKIQRA-HRALDDARATAELF 161

This family includes a variety of exonuclease proteins, such as ribonuclease T and the epsilon subunit of DNA polymerase III.;. Length = 161

>gnl|CDD|176648 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family

 Score = 65.0 bits (159), Expect = 8e-13
 Identities = 41/179 (22%), Positives = 59/179 (32%), Gaps = 34/179 (18%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVC-----LVDEDENVI--FHTYVQPQLPVTNYRYEVTGL 190
           V  D E  G           R+       VD    ++  F T V P  P+      + G+
Sbjct: 1   VVFDTETTGLDPKK-----DRIIEIGAVKVDGGIEIVERFETLVNPGRPIPPEATAIHGI 55

Query: 191 TEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDH 250
           T+E + +A P +EV  + LE L                R+LV H    DL  L       
Sbjct: 56  TDEMLADAPPFEEVLPEFLEFL--------------GGRVLVAHNASFDLRFLNRELRRL 101

Query: 251 MLR-------DTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 302
                     DT +    +   L SH L  L     G  ++ G H    D ++   L  
Sbjct: 102 GGPPLPNPWIDTLRLARRLLPGLRSHRLGLLLAERYGIPLE-GAHRALADALATAELLL 159

DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others. Length = 159

>gnl|CDD|99846 cd06143, PAN2_exo, DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 25/156 (16%)

Query: 157 ARVCLVD---EDENVIF-HTYVQPQLPVTNYRYEVTGLTEEDI------KNAMPLKEVKD 206
           ARV +V    E E V F   Y+    PV +Y    +G+   D+      KN   LK    
Sbjct: 34  ARVSVVRGEGELEGVPFIDDYISTTEPVVDYLTRFSGIKPGDLDPKTSSKNLTTLKSAYL 93

Query: 207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNL 266
           K+           RL++D G   + VGHGL  D   + +  P   + DT +   L     
Sbjct: 94  KL-----------RLLVDLGC--IFVGHGLAKDFRVINIQVPKEQVIDTVELFHLPGQRK 140

Query: 267 VSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 302
           +S  L++L    LG  IQS  HD  ED  + ++LY+
Sbjct: 141 LS--LRFLAWYLLGEKIQSETHDSIEDARTALKLYR 174

PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Length = 174

>gnl|CDD|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 34/172 (19%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKAR 229
           F  +++P  P++ +  E+TG+T++ ++NA  ++EV +K  E                K  
Sbjct: 226 FQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLEKFKEFF--------------KDS 271

Query: 230 LLVGHGLEHDLDSLRMNYPDHMLR-------DTAKYRPLMKTNLVSHSLKYLTRTY-LGY 281
           +LV H    D+  L  N+    L        DT +    +     SH L  + +   +  
Sbjct: 272 ILVAHNASFDIGFLNTNFEKVGLEPLENPVIDTLELARALNPEYKSHRLGNICKKLGVDL 331

Query: 282 DIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIG----NQ--NTTGSFDSYK 327
           D     H    D  +  +++K       Q++E G     +  N   S + YK
Sbjct: 332 DDH---HRADYDAEATAKVFKVMVE---QLKEKGITNLEELNNKLSSEELYK 377

This model describes a polypeptide chain of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model [DNA metabolism, DNA replication, recombination, and repair]. Length = 1213

>gnl|CDD|223916 COG0847, DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 33/149 (22%), Positives = 52/149 (34%), Gaps = 22/149 (14%)

Query: 163 DEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLM 222
                  FHT V P+ P+    +++ G+T+E + +A    EV  + L+ +          
Sbjct: 43  GRIVERSFHTLVNPERPIPPEIFKIHGITDEMLADAPKFAEVLPEFLDFIGGL------- 95

Query: 223 LDDGKARLLVGHGLEHDLDSLRMN-------YPDHMLRDTAKYRPLMKTNLVSHSLKYLT 275
                 RLLV H    D+  LR+         P   + DT              SL  L 
Sbjct: 96  ------RLLVAHNAAFDVGFLRVESERLGIEIPGDPVLDTLALARRHFPGFDRSSLDALA 149

Query: 276 RTYLGYDIQSGV-HDPYEDCVSVMRLYKR 303
              LG D      H    D +++  L+  
Sbjct: 150 E-RLGIDRNPFHPHRALFDALALAELFLL 177

Length = 243

>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 38/174 (21%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKAR 229
           F  +++P  P++    E+TG+T+E ++NA  ++EV +K  E +                 
Sbjct: 457 FQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEKFREFI--------------GDS 502

Query: 230 LLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKT---------NLVSHSLKYLTRTY-L 279
           +LV H    D+  L  NY  + L       P++ T            SH L  L +   +
Sbjct: 503 ILVAHNASFDMGFLNTNYEKYGLEPLT--NPVIDTLELARALNPEFKSHRLGTLCKKLGV 560

Query: 280 GYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTT------GSFDSYK 327
             +     H    D  +  +++  F +    ++E G  N +       S D YK
Sbjct: 561 ELERH---HRADYDAEATAKVFFVFLK---DLKEKGITNLSELNDKLSSEDLYK 608

Length = 1444

>gnl|CDD|99836 cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
             LVD     I   F +YV+P +   ++++  E+TG+T+ED+ NA    EV  + LE L 
Sbjct: 28  AVLVDVKTKEIIDTFSSYVKPVINPKLSDFCTELTGITQEDVDNAPSFPEVLKEFLEWLG 87

Query: 214 N 214
            
Sbjct: 88  K 88

This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional homolog of either ERI-1 or 3'hExo. Length = 176

>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated

 Score = 44.4 bits (106), Expect = 8e-05
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 28/131 (21%)

Query: 164 EDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRL 221
           ++  +I  F  +++P  P++ +  E+TG+T++ +K+A  ++EV  K  E   +       
Sbjct: 447 KNGEIIDKFEFFIKPGHPLSAFTTELTGITDDMVKDAPSIEEVLPKFKEFCGD------- 499

Query: 222 MLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKT---------NLVSHSLK 272
                   +LV H    D+  +  NY    L       P++ T          L SH L 
Sbjct: 500 -------SILVAHNASFDVGFINTNYEKLGLEKIKN--PVIDTLELSRFLYPELKSHRLN 550

Query: 273 YLTRTY-LGYD 282
            L + + +  +
Sbjct: 551 TLAKKFGVELE 561

Length = 1437

>gnl|CDD|236085 PRK07740, PRK07740, hypothetical protein; Provisional

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 164 EDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLML 223
           E E   F++ V+P+ P+  +  E+TG+T ED+  A PL EV  +    +           
Sbjct: 91  EVETDTFYSLVKPKRPIPEHILELTGITAEDVAFAPPLAEVLHRFYAFIG---------- 140

Query: 224 DDGKARLLVGHGLEHDLDSLR 244
               A +LV H   HD   LR
Sbjct: 141 ----AGVLVAHHAGHDKAFLR 157

Length = 244

>gnl|CDD|99835 cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE 216
           FH Y+ P+  +    ++V G+T+E + +     E+ D+ L+ +   E
Sbjct: 37  FHVYINPERDIPEEAFKVHGITDEFLADKPKFAEIADEFLDFIRGAE 83

This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex. Length = 167

>gnl|CDD|130473 TIGR01406, dnaQ_proteo, DNA polymerase III, epsilon subunit, Proteobacterial

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE 216
           FH YV P+  +     +V G+T+E + +    KE+ D+ L+ +   E
Sbjct: 38  FHVYVNPERDMPAEAAKVHGITDEFLADKPKFKEIADEFLDFIGGSE 84

This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in Pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria [DNA metabolism, DNA replication, recombination, and repair]. Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
KOG2249	280	consensus 3'-5' exonuclease [Replication, recombin	100.0
cd06149	157	ISG20 DEDDh 3'-5' exonuclease domain of Interferon	100.0
cd06144	152	REX4_like DEDDh 3'-5' exonuclease domain of RNA ex	100.0
cd06145	150	REX1_like DEDDh 3'-5' exonuclease domain of RNA ex	100.0
cd06143	174	PAN2_exo DEDDh 3'-5' exonuclease domain of the euk	99.97
cd06137	161	DEDDh_RNase DEDDh 3'-5' exonuclease domain of the	99.97
PRK07942	232	DNA polymerase III subunit epsilon; Provisional	99.96
PRK07740	244	hypothetical protein; Provisional	99.96
PRK05711	240	DNA polymerase III subunit epsilon; Provisional	99.95
TIGR01406	225	dnaQ_proteo DNA polymerase III, epsilon subunit, P	99.95
PRK09146	239	DNA polymerase III subunit epsilon; Validated	99.95
PRK07247	195	DNA polymerase III subunit epsilon; Validated	99.95
cd06130	156	DNA_pol_III_epsilon_like an uncharacterized bacter	99.95
PRK08517	257	DNA polymerase III subunit epsilon; Provisional	99.95
PRK06195	309	DNA polymerase III subunit epsilon; Validated	99.95
PRK06807	313	DNA polymerase III subunit epsilon; Validated	99.94
PRK07983	219	exodeoxyribonuclease X; Provisional	99.94
PRK06310	250	DNA polymerase III subunit epsilon; Validated	99.94
PRK06063	313	DNA polymerase III subunit epsilon; Provisional	99.94
PRK06309	232	DNA polymerase III subunit epsilon; Validated	99.94
TIGR00573	217	dnaq exonuclease, DNA polymerase III, epsilon subu	99.94
PRK07748	207	sporulation inhibitor KapD; Provisional	99.94
cd06131	167	DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl	99.94
PRK07883	557	hypothetical protein; Validated	99.94
PRK09145	202	DNA polymerase III subunit epsilon; Validated	99.94
PRK06722	281	exonuclease; Provisional	99.93
cd06134	189	RNaseT DEDDh 3'-5' exonuclease domain of RNase T.	99.93
TIGR01298	200	RNaseT ribonuclease T. in gamma-subdivision Proteo	99.93
COG2176	1444	PolC DNA polymerase III, alpha subunit (gram-posit	99.93
PRK07246	820	bifunctional ATP-dependent DNA helicase/DNA polyme	99.93
cd06136	177	TREX1_2 DEDDh 3'-5' exonuclease domain of three pr	99.93
smart00479	169	EXOIII exonuclease domain in DNA-polymerase alpha	99.93
PRK05168	211	ribonuclease T; Provisional	99.93
PRK08074	928	bifunctional ATP-dependent DNA helicase/DNA polyme	99.92
TIGR01407	850	dinG_rel DnaQ family exonuclease/DinG family helic	99.92
PRK05601	377	DNA polymerase III subunit epsilon; Validated	99.92
KOG2248	380	consensus 3'-5' exonuclease [Replication, recombin	99.91
cd06133	176	ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o	99.9
TIGR01405	1213	polC_Gram_pos DNA polymerase III, alpha chain, Gra	99.9
PRK09182	294	DNA polymerase III subunit epsilon; Validated	99.88
COG0847	243	DnaQ DNA polymerase III, epsilon subunit and relat	99.88
cd06138	183	ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o	99.88
cd06127	159	DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh	99.88
PTZ00315	582	2'-phosphotransferase; Provisional	99.87
PF00929	164	RNase_T: Exonuclease; InterPro: IPR013520 This ent	99.87
PRK11779	476	sbcB exonuclease I; Provisional	99.84
PRK00448	1437	polC DNA polymerase III PolC; Validated	99.84
cd06135	173	Orn DEDDh 3'-5' exonuclease domain of oligoribonuc	99.83
PRK05359	181	oligoribonuclease; Provisional	99.83
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.74
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.62
COG5018	210	KapD Inhibitor of the KinA pathway to sporulation,	99.5
KOG0542	280	consensus Predicted exonuclease [Replication, reco	99.48
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.31
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.14
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.13
KOG3576	267	consensus Ovo and related transcription factors [T	99.08
COG1949	184	Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA	99.05
KOG3608	467	consensus Zn finger proteins [General function pre	99.03
COG2925	475	SbcB Exonuclease I [DNA replication, recombination	99.02
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.01
KOG3242	208	consensus Oligoribonuclease (3'->5' exoribonucleas	98.98
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	98.8
cd05160	199	DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain	98.71
cd06139	193	DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease	98.67
PF01612	176	DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00	98.64
KOG3576	267	consensus Ovo and related transcription factors [T	98.63
KOG3608	467	consensus Zn finger proteins [General function pre	98.57
PHA02768	55	hypothetical protein; Provisional	98.35
PHA02768	55	hypothetical protein; Provisional	98.31
PHA00733	128	hypothetical protein	98.28
PRK05755	880	DNA polymerase I; Provisional	98.25
cd06125	96	DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas	98.25
cd06146	193	mut-7_like_exo DEDDy 3'-5' exonuclease domain of C	98.16
cd05780	195	DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom	98.0
cd06141	170	WRN_exo DEDDy 3'-5' exonuclease domain of WRN and	97.96
PLN03086	567	PRLI-interacting factor K; Provisional	97.95
PHA00616	44	hypothetical protein	97.89
PHA00733	128	hypothetical protein	97.8
cd05781	188	DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of	97.71
cd06129	161	RNaseD_like DEDDy 3'-5' exonuclease domain of RNas	97.7
PF13482	164	RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A	97.63
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.6
cd05785	207	DNA_polB_like2_exo Uncharacterized bacterial subgr	97.56
PRK10829	373	ribonuclease D; Provisional	97.5
KOG0304	239	consensus mRNA deadenylase subunit [RNA processing	97.48
PHA00616	44	hypothetical protein	97.47
cd05779	204	DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai	97.46
cd00007	155	35EXOc 3'-5' exonuclease. The 35EXOc domain is res	97.42
cd05784	193	DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of	97.41
TIGR01388	367	rnd ribonuclease D. This model describes ribonucle	97.36
cd06148	197	Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro	97.35
KOG3993	500	consensus Transcription factor (contains Zn finger	97.31
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.29
PHA00732	79	hypothetical protein	97.28
COG0349	361	Rnd Ribonuclease D [Translation, ribosomal structu	97.27
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.11
cd05783	204	DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of	97.11
KOG3993	500	consensus Transcription factor (contains Zn finger	97.06
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.0
PLN03086	567	PRLI-interacting factor K; Provisional	96.9
smart00474	172	35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo	96.9
PF10108	209	DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate	96.79
PF04857	262	CAF1: CAF1 family ribonuclease; InterPro: IPR00694	96.77
cd05777	230	DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain	96.68
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.37
cd05778	231	DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease	96.34
cd05782	208	DNA_polB_like1_exo Uncharacterized bacterial subgr	96.29
PHA02528	881	43 DNA polymerase; Provisional	96.24
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.23
cd06142	178	RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon	96.18
PRK05762	786	DNA polymerase II; Reviewed	96.16
PHA00732	79	hypothetical protein	96.13
PTZ00166	1054	DNA polymerase delta catalytic subunit; Provisiona	96.09
COG0749	593	PolA DNA polymerase I - 3'-5' exonuclease and poly	95.8
cd06140	178	DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5'	95.78
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	95.77
KOG1798	2173	consensus DNA polymerase epsilon, catalytic subuni	95.73
cd05776	234	DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas	95.72
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.55
smart00355	26	ZnF_C2H2 zinc finger.	95.51
PHA02570	220	dexA exonuclease; Provisional	95.31
TIGR00593	887	pola DNA polymerase I. This family is based on the	95.14
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	95.13
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	94.96
COG5189	423	SFP1 Putative transcriptional repressor regulating	94.84
smart00355	26	ZnF_C2H2 zinc finger.	94.53
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.31
smart00486	471	POLBc DNA polymerase type-B family. DNA polymerase	94.31
cd09018	150	DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease	94.13
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	94.0
PF03104	325	DNA_pol_B_exo1: DNA polymerase family B, exonuclea	93.97
cd06147	192	Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y	93.88
PHA02524	498	43A DNA polymerase subunit A; Provisional	93.82
KOG4793	318	consensus Three prime repair exonuclease [Replicat	93.26
COG0417	792	PolB DNA polymerase elongation subunit (family B)	93.14
KOG3657	1075	consensus Mitochondrial DNA polymerase gamma, cata	92.77
COG3359	278	Predicted exonuclease [DNA replication, recombinat	92.46
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.3
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	92.23
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	92.23
PRK04860	160	hypothetical protein; Provisional	92.09
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	92.08
PRK04860	160	hypothetical protein; Provisional	90.64
TIGR03491	457	RecB family nuclease, putative, TM0106 family. Mem	89.81
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	88.86
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	88.58
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	88.04
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	87.5
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	86.73
COG1198	730	PriA Primosomal protein N' (replication factor Y)	85.38
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	85.35
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	83.63
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	82.64
COG5189	423	SFP1 Putative transcriptional repressor regulating	82.51
TIGR00592	1172	pol2 DNA polymerase (pol2). This family is based o	82.43

>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair]

Probab=100.00  E-value=1.4e-39  Score=280.04  Aligned_cols=268  Identities=41%  Similarity=0.694  Sum_probs=209.0

Q ss_pred             eccccccccChHHHHHHHhhhcCCCCCCccccCcccCCChHHHHhccCCCCCCCCCCccccccccccccccccCchhHHH
Q 018586           17 CVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIK   96 (353)
Q Consensus        17 C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~   96 (353)
                      |..|.+.|.-+..+..|+ +..|....+.|..|.+.-.....+..++..+.+- .|-+.|+...|..|.-.-........
T Consensus         3 ~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T KOG2249|consen    3 ASSCAQQFNKKEHLPNHK-VSRHKLHERKCGKCKKVARSFESNEEGLIAPLPK-EGKNIFSQRGNRFKATIKASPGKRRI   80 (280)
T ss_pred             ccHHHHHhCccccCcccc-chhhccCcchhhhHHHhccCcccccccccCCCCc-ccCccccchhhHHHhhHhhcCCcchh
Confidence            556666676666555555 2113332337777776666666666666444443 66777777777666543333333344


Q ss_pred             HHHHhcCCCCCCcccCCcchhhhhhhccccccccccCCCceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccC
Q 018586           97 HKEACSLSAPVPFEKTLSNAESQKKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQP  176 (353)
Q Consensus        97 H~~~h~~~k~~~c~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P  176 (353)
                      |+..+...    |+.-.          ......+..+..++|++||||+|.++++..+++|+|+|||..|.++||.||+|
T Consensus        81 ~~~~~~~~----~~~~~----------~~~k~s~~~~~~r~vAmDCEMVG~Gp~G~~s~lARvSIVN~~G~VvyDkyVkP  146 (280)
T KOG2249|consen   81 HQGSCQAS----CRMAA----------LGSKDSRMGSLTRVVAMDCEMVGVGPDGRESLLARVSIVNYHGHVVYDKYVKP  146 (280)
T ss_pred             hhcccCCC----ccccc----------cchhhccccccceEEEEeeeEeccCCCccceeeeEEEEeeccCcEeeeeecCC
Confidence            44333222    21110          11112223344479999999999999999999999999999999999999999


Q ss_pred             CCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCCCCceeecc
Q 018586          177 QLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTA  256 (353)
Q Consensus       177 ~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~  256 (353)
                      ..+|.+++|+++||++|.+.+|.||+.|..+++++|              .|+|||||.+.+||.+|.+.+|...++||+
T Consensus       147 ~~~VtDyRT~vSGIrpehm~~A~pf~~aQ~ev~klL--------------~gRIlVGHaLhnDl~~L~l~hp~s~iRDTs  212 (280)
T KOG2249|consen  147 TEPVTDYRTRVSGIRPEHMRDAMPFKVAQKEVLKLL--------------KGRILVGHALHNDLQALKLEHPRSMIRDTS  212 (280)
T ss_pred             CcccccceeeecccCHHHhccCccHHHHHHHHHHHH--------------hCCEEeccccccHHHHHhhhCchhhhcccc
Confidence            999999999999999999999999999999999999              999999999999999999999999999999


Q ss_pred             cccCCcc--cCCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhhhhhh
Q 018586          257 KYRPLMK--TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEI  314 (353)
Q Consensus       257 ~l~~~~~--~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~~~~~  314 (353)
                      .+.++..  .....+||+.|++.+||++|+.|.|++.+||+|||+||.++..+|++....
T Consensus       213 ~~~pl~k~~~~~~tpSLK~Lt~~~Lg~~IQ~GeHsSvEDA~AtM~LY~~vk~qwe~~~~r  272 (280)
T KOG2249|consen  213 KYPPLMKLLSKKATPSLKKLTEALLGKDIQVGEHSSVEDARATMELYKRVKVQWEKIEAR  272 (280)
T ss_pred             cCchHHHHhhccCCccHHHHHHHHhchhhhccccCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9887776  677789999999999999999999999999999999999999999985554

>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins

Probab=100.00  E-value=4.9e-33  Score=232.72  Aligned_cols=150  Identities=39%  Similarity=0.655  Sum_probs=133.0

Q ss_pred             eeccCccccccCCC-CccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcCC
Q 018586          138 VAMDCEMVGGGSNG-TLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE  216 (353)
Q Consensus       138 ~~~D~Ettg~~~~~-~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~~~~  216 (353)
                      +++||||||+++.+ ..++ +++++++.+|.++|+++|+|..+|+++++.+||||+++|+++|++++|+++|.+|+    
T Consensus         1 v~~D~EttGl~~~~~~~~i-~~i~~v~~~g~~~~~~lv~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~l~~~l----   75 (157)
T cd06149           1 VAIDCEMVGTGPGGRESEL-ARCSIVNYHGDVLYDKYIRPEGPVTDYRTRWSGIRRQHLVNATPFAVAQKEILKIL----   75 (157)
T ss_pred             CEEEeEeccccCCCCeEEE-EEEEEEeCCCCEEEEEeECCCCccCccceECCCCCHHHHhcCCCHHHHHHHHHHHc----
Confidence            58999999998654 3455 79999999999999999999999999999999999999999999999999999999    


Q ss_pred             CCcccccCCCCCcEEEecccHHHHHHhcCcCCCCceeecccc--cCCc--ccCCCCCcHHHHHHHHhCCcCCCC--CCCh
Q 018586          217 STGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKY--RPLM--KTNLVSHSLKYLTRTYLGYDIQSG--VHDP  290 (353)
Q Consensus       217 ~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l--~~~~--~~~~~~~~L~~l~~~~~~~~~~~~--~H~A  290 (353)
                                ++++|||||+.||++||++.++...++||..+  .+..  +|...+++|+.|+++|+|..++.+  +|+|
T Consensus        76 ----------~~~vlV~Hn~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~p~~~~~~L~~L~~~~~~~~i~~~~~~H~A  145 (157)
T cd06149          76 ----------KGKVVVGHAIHNDFKALKYFHPKHMTRDTSTIPLLNRKAGFPENCRVSLKVLAKRLLHRDIQVGRQGHSS  145 (157)
T ss_pred             ----------CCCEEEEeCcHHHHHHhcccCCCcCEEECcccccchhhcCCcccCChhHHHHHHHHcChhhcCCCCCcCc
Confidence                      88999999999999999998877778999875  3222  666678999999999987766653  7999


Q ss_pred             HHHHHHHHHHHH
Q 018586          291 YEDCVSVMRLYK  302 (353)
Q Consensus       291 l~Da~~t~~l~~  302 (353)
                      ++||++|++||+
T Consensus       146 l~DA~at~~l~~  157 (157)
T cd06149         146 VEDARATMELYK  157 (157)
T ss_pred             HHHHHHHHHHhC
Confidence            999999999985

Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and repli

>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

Probab=100.00  E-value=9.2e-33  Score=230.29  Aligned_cols=150  Identities=51%  Similarity=0.859  Sum_probs=134.7

Q ss_pred             eeccCccccccCCC-CccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcCC
Q 018586          138 VAMDCEMVGGGSNG-TLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE  216 (353)
Q Consensus       138 ~~~D~Ettg~~~~~-~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~~~~  216 (353)
                      +++||||||+++.+ .+++ +++.+++.+|.++|++||+|..+++++++.+||||++||+++|++++++++|.+|+    
T Consensus         1 v~lD~EttGl~~~~~~~~i-~~v~~v~~~~~~~~~~~v~P~~~i~~~~~~ihGIt~~~v~~a~~~~~~~~~l~~~l----   75 (152)
T cd06144           1 VALDCEMVGVGPDGSESAL-ARVSIVNEDGNVVYDTYVKPQEPVTDYRTAVSGIRPEHLKDAPDFEEVQKKVAELL----   75 (152)
T ss_pred             CEEEEEeecccCCCCEEEE-EEEEEEeCCCCEEEEEEECCCCCCCcccccCCCCCHHHHcCCCCHHHHHHHHHHHh----
Confidence            58999999997653 4555 79999999999999999999999999999999999999999999999999999999    


Q ss_pred             CCcccccCCCCCcEEEecccHHHHHHhcCcCCCCceeecccccCCcccC-CCCCcHHHHHHHHhCCcCCCCCCChHHHHH
Q 018586          217 STGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTN-LVSHSLKYLTRTYLGYDIQSGVHDPYEDCV  295 (353)
Q Consensus       217 ~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~-~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~  295 (353)
                                ++.+|||||+.||++||+...|...++||..+.....+. ..+++|+.|++.++|+++..++|+|++||+
T Consensus        76 ----------~~~vlVgHn~~fD~~~L~~~~~~~~~~dt~~l~~~~~~~~~~~~sL~~l~~~~lgi~~~~~~H~Al~DA~  145 (152)
T cd06144          76 ----------KGRILVGHALKNDLKVLKLDHPKKLIRDTSKYKPLRKTAKGKSPSLKKLAKQLLGLDIQEGEHSSVEDAR  145 (152)
T ss_pred             ----------CCCEEEEcCcHHHHHHhcCcCCCccEEEeEEeeccccccCCCChhHHHHHHHHcCcccCCCCcCcHHHHH
Confidence                      789999999999999999988888899999887655443 478999999999889997767999999999


Q ss_pred             HHHHHHH
Q 018586          296 SVMRLYK  302 (353)
Q Consensus       296 ~t~~l~~  302 (353)
                      +|++||+
T Consensus       146 at~~l~~  152 (152)
T cd06144         146 AAMRLYR  152 (152)
T ss_pred             HHHHHhC
Confidence            9999984

This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clus

>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins

Probab=100.00  E-value=1.4e-32  Score=228.37  Aligned_cols=146  Identities=38%  Similarity=0.624  Sum_probs=131.6

Q ss_pred             eeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCC-ChHHHHHHHHHHHhcCC
Q 018586          138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAM-PLKEVKDKILEILNNGE  216 (353)
Q Consensus       138 ~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~-~~~~v~~~~~~~~~~~~  216 (353)
                      +++||||+|.+..  .++ +++++++.+|.++|++||+|..+|+++++++||||++||+++| ++++|+++|.+|+    
T Consensus         1 ~~iD~E~~g~~~g--~ei-~~i~~v~~~~~~~f~~lv~P~~~i~~~~t~itGIt~~~l~~a~~~~~~v~~~~~~fl----   73 (150)
T cd06145           1 FALDCEMCYTTDG--LEL-TRVTVVDENGKVVLDELVKPDGEIVDYNTRFSGITEEMLENVTTTLEDVQKKLLSLI----   73 (150)
T ss_pred             CEEeeeeeeecCC--CEE-EEEEEEeCCCCEEEEEeECCCCccchhccCcCCCCHHHhccCCCCHHHHHHHHHHHh----
Confidence            5799999998543  555 7999999999999999999999999999999999999999995 9999999999999    


Q ss_pred             CCcccccCCCC-CcEEEecccHHHHHHhcCcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCC--CCCChHHH
Q 018586          217 STGRLMLDDGK-ARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS--GVHDPYED  293 (353)
Q Consensus       217 ~~~~~~~~~~~-~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~--~~H~Al~D  293 (353)
                                + +.+|||||+.||+.||+...+.  ++||+.|++...+...+++|+.||+.|++..++.  ++|+|++|
T Consensus        74 ----------~~~~vlVgHn~~fD~~fL~~~~~~--~iDT~~l~r~~~~~~~~~~L~~L~~~~~~~~i~~~~~~H~Al~D  141 (150)
T cd06145          74 ----------SPDTILVGHSLENDLKALKLIHPR--VIDTAILFPHPRGPPYKPSLKNLAKKYLGRDIQQGEGGHDSVED  141 (150)
T ss_pred             ----------CCCCEEEEcChHHHHHHhhccCCC--EEEcHHhccccCCCCCChhHHHHHHHHCCcceeCCCCCCCcHHH
Confidence                      5 7899999999999999976654  8999999998877777899999999998877763  68999999


Q ss_pred             HHHHHHHHH
Q 018586          294 CVSVMRLYK  302 (353)
Q Consensus       294 a~~t~~l~~  302 (353)
                      |++|++||.
T Consensus       142 A~~t~~l~~  150 (150)
T cd06145         142 ARAALELVK  150 (150)
T ss_pred             HHHHHHHhC
Confidence            999999984

This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T.

>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2

Probab=99.97  E-value=3.4e-31  Score=219.97  Aligned_cols=150  Identities=29%  Similarity=0.445  Sum_probs=133.1

Q ss_pred             eeccCccccccC-------CCCc-------cceeEEeeec----CCCCeEEeeeccCCCCccccccccCCCCHhhhcCCC
Q 018586          138 VAMDCEMVGGGS-------NGTL-------DLCARVCLVD----EDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAM  199 (353)
Q Consensus       138 ~~~D~Ettg~~~-------~~~~-------~il~~v~ivd----~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~  199 (353)
                      +++|||+.|.++       ++..       ..+++|++||    .+|++++|.||+|..+|.++.|+++|||++++.++.
T Consensus         1 ~a~d~e~v~~~~~~~~~~~~g~~~~~~~~~~~LaRVsiVd~~~~~~g~vllD~~VkP~~~V~DYrT~~SGIt~~~L~~a~   80 (174)
T cd06143           1 VAIDAEFVKLKPEETEIRSDGTKSTIRPSQMSLARVSVVRGEGELEGVPFIDDYISTTEPVVDYLTRFSGIKPGDLDPKT   80 (174)
T ss_pred             CceeeeEEEecchhceecCCCcEeeeccCCceeEEEEEEcCCCCcCCCEEEeeeECCCCCccCcCccccccCHHHcCccc
Confidence            467888888764       3444       2359999999    699999999999999999999999999999998764


Q ss_pred             ------ChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCCCCceeecccccCCcccCCCCCcHHH
Q 018586          200 ------PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKY  273 (353)
Q Consensus       200 ------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~  273 (353)
                            ++++|..++.+++             +.++|||||++++||++|++.+|...++||+.+++.  +..+.++|+.
T Consensus        81 ~~~~~~t~~~v~~~l~~li-------------~~~tILVGHsL~nDL~aL~l~hp~~~viDTa~l~~~--~~~r~~sLk~  145 (174)
T cd06143          81 SSKNLTTLKSAYLKLRLLV-------------DLGCIFVGHGLAKDFRVINIQVPKEQVIDTVELFHL--PGQRKLSLRF  145 (174)
T ss_pred             cccccCCHHHHHHHHHHHc-------------CCCCEEEeccchhHHHHhcCcCCCcceEEcHHhccC--CCCCChhHHH
Confidence                  6999999999999             368999999999999999999998889999998875  3445799999


Q ss_pred             HHHHHhCCcCCCCCCChHHHHHHHHHHHH
Q 018586          274 LTRTYLGYDIQSGVHDPYEDCVSVMRLYK  302 (353)
Q Consensus       274 l~~~~~~~~~~~~~H~Al~Da~~t~~l~~  302 (353)
                      |++.+||..||.+.|++++||+|||+||+
T Consensus       146 La~~~L~~~IQ~~~HdSvEDArAam~Ly~  174 (174)
T cd06143         146 LAWYLLGEKIQSETHDSIEDARTALKLYR  174 (174)
T ss_pred             HHHHHcCCcccCCCcCcHHHHHHHHHHhC
Confidence            99999999999999999999999999984

PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.

>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins

Probab=99.97  E-value=4.4e-31  Score=222.17  Aligned_cols=147  Identities=32%  Similarity=0.519  Sum_probs=126.4

Q ss_pred             eeccCccccccCCCCccceeEEeeecC-CCCeEEeeeccCCCCccccccccCCCCHhhhcCCCC-------hHHHHHHHH
Q 018586          138 VAMDCEMVGGGSNGTLDLCARVCLVDE-DENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMP-------LKEVKDKIL  209 (353)
Q Consensus       138 ~~~D~Ettg~~~~~~~~il~~v~ivd~-~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~-------~~~v~~~~~  209 (353)
                      +++||||||+++.. .++ .++.+|+. +|+++|+.||+|..+|+++++++||||++||+++|+       |++++++|.
T Consensus         1 v~lD~EttGl~~~~-d~i-i~Ig~V~v~~g~i~~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~~~~~~~~~~~~~~~   78 (161)
T cd06137           1 VALDCEMVGLADGD-SEV-VRISAVDVLTGEVLIDSLVRPSVRVTDWRTRFSGVTPADLEEAAKAGKTIFGWEAARAALW   78 (161)
T ss_pred             CEEEeeeeeEcCCC-CEE-EEEEEEEcCCCeEEEeccccCCCCCCccceeccCCCHHHHhhhhhcCCccccHHHHHHHHH
Confidence            58999999997532 233 35555555 888899999999999999999999999999999875       358999999


Q ss_pred             HHHhcCCCCcccccCCCCC-cEEEecccHHHHHHhcCcCCCCceeecccccCCcccCC---CCCcHHHHHHHHhCCcCCC
Q 018586          210 EILNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNL---VSHSLKYLTRTYLGYDIQS  285 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~-~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~---~~~~L~~l~~~~~~~~~~~  285 (353)
                      +|+              ++ .+|||||+.||++||+...+  +++||+.+++.+.+..   .+++|+.|++.++|++++.
T Consensus        79 ~~i--------------~~~~vlVgHn~~fD~~fL~~~~~--~~iDT~~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~  142 (161)
T cd06137          79 KFI--------------DPDTILVGHSLQNDLDALRMIHT--RVVDTAILTREAVKGPLAKRQWSLRTLCRDFLGLKIQG  142 (161)
T ss_pred             Hhc--------------CCCcEEEeccHHHHHHHHhCcCC--CeeEehhhhhhccCCCcCCCCccHHHHHHHHCCchhcC
Confidence            999              66 89999999999999997654  4899999999988765   6899999999988999864


Q ss_pred             --CCCChHHHHHHHHHHHH
Q 018586          286 --GVHDPYEDCVSVMRLYK  302 (353)
Q Consensus       286 --~~H~Al~Da~~t~~l~~  302 (353)
                        ++|+|++||++|++||.
T Consensus       143 ~~~~H~A~~DA~at~~l~~  161 (161)
T cd06137         143 GGEGHDSLEDALAAREVVL  161 (161)
T ss_pred             CCCCCCcHHHHHHHHHHhC
Confidence              48999999999999984

This group is composed of eukaryotic exoribonucleases that include PAN2, RNA exonuclease 1 (REX1 or Rex1p), REX3 (Rex3p), REX4 (or Rex4p), ISG20, and similar proteins. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. REX proteins are required for the processing and maturation of many RNA species, and ISG20 is an interferon-induced antiviral exonuclease with a strong prefere

>PRK07942 DNA polymerase III subunit epsilon; Provisional

Probab=99.96  E-value=2.7e-29  Score=223.24  Aligned_cols=187  Identities=20%  Similarity=0.214  Sum_probs=150.7

Q ss_pred             cCCCceeeccCccccccC--CCCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcC-CCChHHHHH
Q 018586          132 CRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKN-AMPLKEVKD  206 (353)
Q Consensus       132 ~~~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~-~~~~~~v~~  206 (353)
                      +...+++++|+||||+++  ++++++ +.|.+ +.+|.+  .++.+|+|..+|++.++.|||||++++.+ ++++++|+.
T Consensus         3 ~~~~~~vv~D~ETTGl~p~~d~Iiei-g~v~v-~~~g~~~~~~~~lv~P~~~i~~~a~~IhGIt~e~l~~~g~~~~~vl~   80 (232)
T PRK07942          3 WHPGPLAAFDLETTGVDPETARIVTA-ALVVV-DADGEVVESREWLADPGVEIPEEASAVHGITTEYARAHGRPAAEVLA   80 (232)
T ss_pred             cccCcEEEEEeccCCCCCCCCeeEEE-EEEEE-eCCCccccceEEEECCCCCCCHHHHHHhCCCHHHHHhhCCCHHHHHH
Confidence            456789999999999874  456666 55555 444665  47899999999999999999999999975 788999999


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc-----C---CCCceeecccccCCcccC-CCCCcHHHHHHH
Q 018586          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-----Y---PDHMLRDTAKYRPLMKTN-LVSHSLKYLTRT  277 (353)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-----~---~~~~~~Dt~~l~~~~~~~-~~~~~L~~l~~~  277 (353)
                      +|.++|.+...         ++.+|||||+.||+.||+..     .   ....++|+..+.+.+.+. ..+++|.+|+++
T Consensus        81 e~~~~l~~~~~---------~~~~lVahNa~FD~~fL~~~~~r~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~  151 (232)
T PRK07942         81 EIADALREAWA---------RGVPVVVFNAPYDLTVLDRELRRHGLPSLVPGPVIDPYVIDKAVDRYRKGKRTLTALCEH  151 (232)
T ss_pred             HHHHHHHHHhh---------cCCEEEEeCcHhhHHHHHHHHHHcCCCCccCCcEeeHHHHHhhhhcccCCCCCHHHHHHH
Confidence            99998832211         46799999999999999822     1   124689999888766543 357899999999


Q ss_pred             HhCCcCCCCCCChHHHHHHHHHHHHHHHhchhhhhhhcccCCCCCCCCcchhHHhhcChhhhhccCCCCceeee
Q 018586          278 YLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWC  351 (353)
Q Consensus       278 ~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (353)
                      | |++. .++|+|++||.+|++||.++.++...                    +..+++++|+++++.|+.-|.
T Consensus       152 ~-gi~~-~~aH~Al~Da~ata~l~~~l~~~~~~--------------------l~~~~~~~l~~~q~~~~~~~~  203 (232)
T PRK07942        152 Y-GVRL-DNAHEATADALAAARVAWALARRFPE--------------------LAALSPAELHELQAVWYAEQA  203 (232)
T ss_pred             c-CCCC-CCCCChHHHHHHHHHHHHHHHHHHHH--------------------hhcCCHHHHHHHHHHHHHHHH
Confidence            8 9985 45999999999999999999988655                    678899999999998887664

>PRK07740 hypothetical protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=219.59  Aligned_cols=163  Identities=27%  Similarity=0.333  Sum_probs=139.3

Q ss_pred             ccccCCCceeeccCccccccC---CCCccceeEEeeecCCCCe---EEeeeccCCCCccccccccCCCCHhhhcCCCChH
Q 018586          129 KRTCRGPKAVAMDCEMVGGGS---NGTLDLCARVCLVDEDENV---IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLK  202 (353)
Q Consensus       129 ~~~~~~~~~~~~D~Ettg~~~---~~~~~il~~v~ivd~~g~~---~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~  202 (353)
                      ..+....+++++|+||||.++   ++++++ ++|.+.  .+.+   .|+.+|+|..++++.++++||||+++|+++|++.
T Consensus        53 ~~~~~~~~~vv~D~ETTGl~p~~~deIIeI-gaV~~~--~~~i~~~~f~~lv~P~~~i~~~~~~ltGIt~e~l~~ap~~~  129 (244)
T PRK07740         53 DIPLTDLPFVVFDLETTGFSPQQGDEILSI-GAVKTK--GGEVETDTFYSLVKPKRPIPEHILELTGITAEDVAFAPPLA  129 (244)
T ss_pred             CCCccCCCEEEEEEeCCCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEEeCcCCCCChhheeccCCCHHHHhCCCCHH
Confidence            345677889999999999875   456666 677663  3333   3889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcC------cCC-CCceeecccccCCcccCCCCCcHHHHH
Q 018586          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM------NYP-DHMLRDTAKYRPLMKTNLVSHSLKYLT  275 (353)
Q Consensus       203 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~------~~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l~  275 (353)
                      +|+.+|.+|+              ++.+|||||+.||+.||+.      ..| ...++||..+++.+.+....++|++|+
T Consensus       130 evl~~f~~fi--------------~~~~lVahna~fD~~fL~~~~~~~~~~~~~~~~iDt~~l~r~l~~~~~~~sL~~l~  195 (244)
T PRK07740        130 EVLHRFYAFI--------------GAGVLVAHHAGHDKAFLRHALWRTYRQPFTHRLIDTMFLTKLLAHERDFPTLDDAL  195 (244)
T ss_pred             HHHHHHHHHh--------------CCCEEEEeCHHHHHHHHHHHHHHhcCCCcCCCeechHHHHHHHcCCCCCCCHHHHH
Confidence            9999999999              8889999999999999972      222 256899999998888877789999999


Q ss_pred             HHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          276 RTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       276 ~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      .+| |+++. ++|+|++||++|++||.++..+..+
T Consensus       196 ~~~-gi~~~-~~H~Al~Da~ata~l~~~ll~~~~~  228 (244)
T PRK07740        196 AYY-GIPIP-RRHHALGDALMTAKLWAILLVEAQQ  228 (244)
T ss_pred             HHC-CcCCC-CCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            987 99954 5899999999999999999988655

>PRK05711 DNA polymerase III subunit epsilon; Provisional

Probab=99.95  E-value=2.6e-28  Score=216.64  Aligned_cols=158  Identities=22%  Similarity=0.330  Sum_probs=134.0

Q ss_pred             CCceeeccCccccccC---CCCccceeEEeeecCCCC-eEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHH
Q 018586          134 GPKAVAMDCEMVGGGS---NGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  209 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~---~~~~~il~~v~ivd~~g~-~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~  209 (353)
                      .++++++|+||||+++   ++++|| +.|.+.+.... ..|+.||+|..+|++.+++|||||+++|+++|+|++|+++|.
T Consensus         3 ~~r~vvlDtETTGldp~~~drIIEI-GaV~v~~~~~~~~~f~~~i~P~~~i~~~a~~VHGIT~e~l~~~p~f~ev~~~f~   81 (240)
T PRK05711          3 IMRQIVLDTETTGLNQREGHRIIEI-GAVELINRRLTGRNFHVYIKPDRLVDPEALAVHGITDEFLADKPTFAEVADEFL   81 (240)
T ss_pred             CCeEEEEEeeCCCcCCCCCCeEEEE-EEEEEECCEEeccEEEEEECcCCcCCHHHhhhcCCCHHHHcCCCCHHHHHHHHH
Confidence            4689999999999974   467777 78887543221 258999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcC-------cCC----CCceeecccccCCcccCCCCCcHHHHHHHH
Q 018586          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-------NYP----DHMLRDTAKYRPLMKTNLVSHSLKYLTRTY  278 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-------~~~----~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~  278 (353)
                      +|+              ++.+|||||+.||+.||+.       ..|    ...++||+.+++.++|. .+++|+.||++|
T Consensus        82 ~fi--------------~~~~lVaHNa~FD~~fL~~el~r~g~~~~~~~~~~~~iDTl~lar~~~p~-~~~~L~aL~~~~  146 (240)
T PRK05711         82 DFI--------------RGAELIIHNAPFDIGFMDYEFALLGRDIPKTNTFCKVTDTLAMARRMFPG-KRNSLDALCKRY  146 (240)
T ss_pred             HHh--------------CCCEEEEEccHHhHHHHHHHHHHhCCCCCcccccCceeeHHHHHHHHcCC-CCCCHHHHHHHC
Confidence            999              8889999999999999982       233    14589999999988876 457999999999


Q ss_pred             hCCcCCCC-CCChHHHHHHHHHHHHHHHhch
Q 018586          279 LGYDIQSG-VHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       279 ~~~~~~~~-~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                       |++.... .|+|+.||.+|++||..+....
T Consensus       147 -gi~~~~r~~H~AL~DA~~~A~v~~~l~~~~  176 (240)
T PRK05711        147 -GIDNSHRTLHGALLDAEILAEVYLAMTGGQ  176 (240)
T ss_pred             -CCCCCCCCCCCHHHHHHHHHHHHHHHHCcc
Confidence             8874432 6999999999999999998663

>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial

Probab=99.95  E-value=4.3e-28  Score=214.20  Aligned_cols=161  Identities=21%  Similarity=0.280  Sum_probs=136.0

Q ss_pred             ceeeccCccccccC---CCCccceeEEeeecCCCC-eEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 018586          136 KAVAMDCEMVGGGS---NGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (353)
Q Consensus       136 ~~~~~D~Ettg~~~---~~~~~il~~v~ivd~~g~-~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~  211 (353)
                      +++++|+||||+++   ++++|+ +.|.+++.... ..|+.||+|..+|++.+++|||||+++|+++|+|.+|+.+|.+|
T Consensus         1 r~vvlD~ETTGl~p~~~d~IIEI-gav~~~~~~~~~~~f~~~i~P~~~i~~~a~~vhGIt~e~l~~~p~f~ev~~~f~~f   79 (225)
T TIGR01406         1 RQIILDTETTGLDPKGGHRIVEI-GAVELVNRMLTGDNFHVYVNPERDMPAEAAKVHGITDEFLADKPKFKEIADEFLDF   79 (225)
T ss_pred             CEEEEEeeCCCcCCCCCCeEEEE-EEEEEECCcEecceEEEEECcCCCCCHHHHhccCCCHHHHhCCCCHHHHHHHHHHH
Confidence            47899999999875   457777 78877643211 25999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcEEEecccHHHHHHhc-----Cc--CC----CCceeecccccCCcccCCCCCcHHHHHHHHhC
Q 018586          212 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-----MN--YP----DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLG  280 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-----~~--~~----~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~  280 (353)
                      +              ++.+|||||+.||+.||+     ..  .+    ...++||+.+++.++|. .+++|+.||++| |
T Consensus        80 i--------------~~~~lVaHNa~FD~~fL~~el~r~g~~~~~~~~~~~~iDTl~lar~~~p~-~~~~L~~L~~~~-g  143 (225)
T TIGR01406        80 I--------------GGSELVIHNAAFDVGFLNYELERLGPTIKKIGEFCRVIDTLAMARERFPG-QRNSLDALCKRF-K  143 (225)
T ss_pred             h--------------CCCEEEEEecHHHHHHHHHHHHHhCCCCcccccCCCEEEHHHHHHHHcCC-CCCCHHHHHHhc-C
Confidence            9              889999999999999998     22  12    15789999999888876 468999999999 8


Q ss_pred             CcCCCC-CCChHHHHHHHHHHHHHHHhchhhhhh
Q 018586          281 YDIQSG-VHDPYEDCVSVMRLYKRFRRQDHQVEE  313 (353)
Q Consensus       281 ~~~~~~-~H~Al~Da~~t~~l~~~~~~~~~~~~~  313 (353)
                      ++.... .|+|+.||.+|++||..+......+..
T Consensus       144 i~~~~r~~H~Al~DA~~~a~v~~~l~~~~~~~~~  177 (225)
T TIGR01406       144 VDNSHRTLHGALLDAHLLAEVYLALTGGQESLLE  177 (225)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHcCCcchhh
Confidence            885433 799999999999999999887665443

This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria.

>PRK09146 DNA polymerase III subunit epsilon; Validated

Probab=99.95  E-value=7e-28  Score=214.30  Aligned_cols=163  Identities=19%  Similarity=0.239  Sum_probs=137.0

Q ss_pred             ccccccCCCceeeccCccccccC--CCCccceeEEeeecCCCCe----EEeeeccCCCCccccccccCCCCHhhhcCCCC
Q 018586          127 DEKRTCRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV----IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMP  200 (353)
Q Consensus       127 ~e~~~~~~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~----~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~  200 (353)
                      ....+.....|+++|+||||+++  ++++++ |.|.+.  .+.+    .++.+|+|..+|++.++.|||||+++|.++|+
T Consensus        39 ~~~~~~~~~~~vviD~ETTGl~p~~d~IieI-g~v~v~--~~~i~~~~~~~~li~P~~~i~~~~~~IhGIt~e~l~~ap~  115 (239)
T PRK09146         39 SPDTPLSEVPFVALDFETTGLDAEQDAIVSI-GLVPFT--LQRIRCRQARHWVVKPRRPLEEESVVIHGITHSELQDAPD  115 (239)
T ss_pred             CCCCCcccCCEEEEEeECCCCCCCCCcEEEE-EEEEEE--CCeEeecceEEEEECCCCCCChhhhhhcCCCHHHHhCCCC
Confidence            34456778899999999999874  566777 677663  3333    47899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc-------CCCCceeecccccCCcccCC-------
Q 018586          201 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YPDHMLRDTAKYRPLMKTNL-------  266 (353)
Q Consensus       201 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-------~~~~~~~Dt~~l~~~~~~~~-------  266 (353)
                      +.+|+.+|.+++              ++.++||||+.||+.||+..       ....+++||+.+++.+.+..       
T Consensus       116 ~~evl~~l~~~~--------------~~~~lVaHna~FD~~fL~~~l~~~~~~~~~~~~iDTl~Lar~l~~~~~~~~~~~  181 (239)
T PRK09146        116 LERILDELLEAL--------------AGKVVVVHYRRIERDFLDQALRNRIGEGIEFPVIDTMEIEARIQRKQAGGLWNR  181 (239)
T ss_pred             HHHHHHHHHHHh--------------CCCEEEEECHHHHHHHHHHHHHHhcCCCCCCceechHHHHHHHcccccccccch
Confidence            999999999999              88899999999999999722       12356899999987765432       


Q ss_pred             ------CCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhch
Q 018586          267 ------VSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       267 ------~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                            ..++|.+++.+| |++ ..++|+|++||.+|++||..+..+.
T Consensus       182 ~~~~~~~~~~L~~l~~~~-gl~-~~~~H~Al~DA~ata~l~~~~~~~~  227 (239)
T PRK09146        182 LKGKKPESIRLADSRLRY-GLP-AYSPHHALTDAIATAELLQAQIAHH  227 (239)
T ss_pred             hccCCCCCCCHHHHHHHc-CCC-CCCCCCcHHHHHHHHHHHHHHHHHH
Confidence                  568999999998 988 5569999999999999999998775

>PRK07247 DNA polymerase III subunit epsilon; Validated

Probab=99.95  E-value=1.6e-27  Score=205.33  Aligned_cols=157  Identities=22%  Similarity=0.282  Sum_probs=128.0

Q ss_pred             CCceeeccCcccccc-CCCCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHH
Q 018586          134 GPKAVAMDCEMVGGG-SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~-~~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~  210 (353)
                      ...|+++|+||||.+ .+.++++ ++|.+.  .|.+  .|++||+|..++++.++++||||++||+++|++.+|+++|.+
T Consensus         4 ~~~~vvlD~EtTGl~~~~eIIeI-gaV~v~--~g~~~~~f~~lv~P~~~i~~~~~~lhGIt~~~v~~ap~~~evl~~f~~   80 (195)
T PRK07247          4 LETYIAFDLEFNTVNGVSHIIQV-SAVKYD--DHKEVDSFDSYVYTDVPLQSFINGLTGITADKIADAPKVEEVLAAFKE   80 (195)
T ss_pred             CCeEEEEEeeCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECCCCCCCccceecCCCCHHHHhCCCCHHHHHHHHHH
Confidence            457999999999986 3456666 677773  4443  599999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcccccCCCCCcEEEecccH-HHHHHhcCc---CCCCceeeccccc--CCc--ccCCCCCcHHHHHHHHhCCc
Q 018586          211 ILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLRMN---YPDHMLRDTAKYR--PLM--KTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~~~---~~~~~~~Dt~~l~--~~~--~~~~~~~~L~~l~~~~~~~~  282 (353)
                      |+              ++.+|||||+. ||+.||...   .+....+|+....  +..  .+...+++|..|+++| |++
T Consensus        81 f~--------------~~~~lVaHNa~~fD~~fL~~~g~~~~~~~~idt~~~~~~~~~~~~~~~~~~~L~~La~~~-gi~  145 (195)
T PRK07247         81 FV--------------GELPLIGYNAQKSDLPILAENGLDLSDQYQVDLYDEAFERRSSDLNGIANLKLQTVADFL-GIK  145 (195)
T ss_pred             HH--------------CCCeEEEEeCcHhHHHHHHHcCCCcCCCceeehHHHHHHhhccccCCCCCCCHHHHHHhc-CCC
Confidence            99              88899999997 899999832   2223456775332  221  3455689999999998 888


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          283 IQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       283 ~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      .  .+|+|++||++|+.||.++++..+.
T Consensus       146 ~--~~HrAl~DA~~ta~v~~~ll~~~~~  171 (195)
T PRK07247        146 G--RGHNSLEDARMTARVYESFLESDQN  171 (195)
T ss_pred             C--CCcCCHHHHHHHHHHHHHHHhhccc
Confidence            4  4899999999999999999988654

>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III

Probab=99.95  E-value=7.9e-28  Score=201.70  Aligned_cols=146  Identities=23%  Similarity=0.333  Sum_probs=130.5

Q ss_pred             eeeccCccccccCCCCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhc
Q 018586          137 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  214 (353)
Q Consensus       137 ~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~~  214 (353)
                      ++++|+||||...+.++++ +.|.+.  .|++  .|+.+|+|..++++.++++||||+++|++++++.+|+.+|.+|+  
T Consensus         1 ~v~~D~Ettg~~~~~ii~i-g~v~~~--~~~~~~~~~~~i~p~~~~~~~~~~i~GIt~e~l~~~~~~~~v~~~l~~~l--   75 (156)
T cd06130           1 FVAIDFETANADRASACSI-GLVKVR--DGQIVDTFYTLIRPPTRFDPFNIAIHGITPEDVADAPTFPEVWPEIKPFL--   75 (156)
T ss_pred             CEEEEEeCCCCCCCceEEE-EEEEEE--CCEEEEEEEEEeCcCCCCChhhccccCcCHHHHhcCCCHHHHHHHHHHHh--
Confidence            5899999999877888887 677773  4554  48999999999999999999999999999999999999999999  


Q ss_pred             CCCCcccccCCCCCcEEEecccHHHHHHhc-------CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCC
Q 018586          215 GESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV  287 (353)
Q Consensus       215 ~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~  287 (353)
                                  ++.++||||+.||+.+|+       +..+...++||+.+++.+++...+++|..|++.| |+++.  +
T Consensus        76 ------------~~~~lv~hn~~fD~~~l~~~~~~~g~~~~~~~~idt~~~~~~~~~~~~~~~L~~l~~~~-g~~~~--~  140 (156)
T cd06130          76 ------------GGSLVVAHNASFDRSVLRAALEAYGLPPPPYQYLCTVRLARRVWPLLPNHKLNTVAEHL-GIELN--H  140 (156)
T ss_pred             ------------CCCEEEEeChHHhHHHHHHHHHHcCCCCCCCCEEEHHHHHHHHhccCCCCCHHHHHHHc-CCCcc--C
Confidence                        778999999999999997       3455678999999999988888899999999988 99966  9


Q ss_pred             CChHHHHHHHHHHHH
Q 018586          288 HDPYEDCVSVMRLYK  302 (353)
Q Consensus       288 H~Al~Da~~t~~l~~  302 (353)
                      |+|++||++|++||.
T Consensus       141 H~Al~Da~~ta~l~~  155 (156)
T cd06130         141 HDALEDARACAEILL  155 (156)
T ss_pred             cCchHHHHHHHHHHh
Confidence            999999999999985

This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser

>PRK08517 DNA polymerase III subunit epsilon; Provisional

Probab=99.95  E-value=1.5e-27  Score=214.09  Aligned_cols=174  Identities=21%  Similarity=0.295  Sum_probs=144.3

Q ss_pred             cccCCCceeeccCccccccCC--CCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHH
Q 018586          130 RTCRGPKAVAMDCEMVGGGSN--GTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVK  205 (353)
Q Consensus       130 ~~~~~~~~~~~D~Ettg~~~~--~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~  205 (353)
                      ++.....|+++|+||||.++.  +++|+ |+|.+.  +|.+  .|+.+|+|. ++++.++++||||+++|.++|++.+|+
T Consensus        63 ~~~~~~~~vv~DiETTG~~~~~~~IIEI-GAv~v~--~g~i~~~f~~~v~p~-~ip~~~~~itGIt~e~l~~ap~~~evl  138 (257)
T PRK08517         63 TPIKDQVFCFVDIETNGSKPKKHQIIEI-GAVKVK--NGEIIDRFESFVKAK-EVPEYITELTGITYEDLENAPSLKEVL  138 (257)
T ss_pred             CCCCCCCEEEEEEeCCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECCC-CCChhhhhhcCcCHHHHcCCCCHHHHH
Confidence            456788999999999998743  57777 777773  4555  489999997 899999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-----CcC--CCCceeecccccCCcccCCCCCcHHHHHHHH
Q 018586          206 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-----MNY--PDHMLRDTAKYRPLMKTNLVSHSLKYLTRTY  278 (353)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-----~~~--~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~  278 (353)
                      .+|.+|+              ++.++||||+.||+.||+     ...  ...+.+||..+++...+. .+++|++|++.+
T Consensus       139 ~~f~~fl--------------~~~v~VaHNa~FD~~fL~~~l~r~g~~~~~~~~ldtl~la~~~~~~-~~~~L~~L~~~l  203 (257)
T PRK08517        139 EEFRLFL--------------GDSVFVAHNVNFDYNFISRSLEEIGLGPLLNRKLCTIDLAKRTIES-PRYGLSFLKELL  203 (257)
T ss_pred             HHHHHHH--------------CCCeEEEECHHHHHHHHHHHHHHcCCCCCCCCcEehHHHHHHHccC-CCCCHHHHHHHc
Confidence            9999999              788999999999999997     222  225679999998776554 578999999987


Q ss_pred             hCCcCCCCCCChHHHHHHHHHHHHHHHhchhhhhhhcccCCCCCCCCcchhHHhhcChhhhhccCCC
Q 018586          279 LGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKS  345 (353)
Q Consensus       279 ~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (353)
                       |++. ..+|+|++||.+|++||..+.++...                     ...+.++|+++++.
T Consensus       204 -gi~~-~~~HrAl~DA~ata~ll~~ll~~~~~---------------------~~~t~~~L~~~~k~  247 (257)
T PRK08517        204 -GIEI-EVHHRAYADALAAYEIFKICLLNLPS---------------------YIKTTEDLIDFSKT  247 (257)
T ss_pred             -CcCC-CCCCChHHHHHHHHHHHHHHHHHhHH---------------------hhcCHHHHHHHhhh
Confidence             9984 46999999999999999999988654                     12356777777765

>PRK06195 DNA polymerase III subunit epsilon; Validated

Probab=99.95  E-value=2.3e-27  Score=219.67  Aligned_cols=154  Identities=18%  Similarity=0.307  Sum_probs=135.9

Q ss_pred             CceeeccCccccccCCCCccceeEEeeecCCCCe--EEeeeccCCC-CccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 018586          135 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENV--IFHTYVQPQL-PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (353)
Q Consensus       135 ~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~--~~~~lv~P~~-~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~  211 (353)
                      ++|+++|+||||...++++++ ++|.+.  +|.+  .|++||+|.. .+++.++.|||||+++|+++|+|.+|+++|.+|
T Consensus         1 ~~~vviD~ETTg~~~d~IieI-gav~v~--~g~i~~~f~~lv~P~~~~~~~~~~~IhGIT~e~v~~ap~f~ev~~~~~~f   77 (309)
T PRK06195          1 MNFVAIDFETANEKRNSPCSI-GIVVVK--DGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHMVEDELEFDKIWEKIKHY   77 (309)
T ss_pred             CcEEEEEEeCCCCCCCceEEE-EEEEEE--CCEEEEEEEEEECCCCCCCChhheeccCcCHHHHhCCCCHHHHHHHHHHH
Confidence            469999999999877888888 788874  4555  4899999985 578888999999999999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcEEEecccHHHHHHhc-------CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCC
Q 018586          212 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ  284 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~  284 (353)
                      +              ++.+|||||+.||+.||+       +..|...++||+.+++.+++...+++|..|++.| |++. 
T Consensus        78 l--------------~~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~idT~~lar~l~~~~~~~~L~~L~~~~-gi~~-  141 (309)
T PRK06195         78 F--------------NNNLVIAHNASFDISVLRKTLELYNIPMPSFEYICTMKLAKNFYSNIDNARLNTVNNFL-GYEF-  141 (309)
T ss_pred             h--------------CCCEEEEECcHHHHHHHHHHHHHhCCCCCCCCEEEHHHHHHHHcCCCCcCCHHHHHHHc-CCCC-
Confidence            9              889999999999999997       3345567899999999988888899999999999 8874 


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhch
Q 018586          285 SGVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       285 ~~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                       .+|+|++||++|++||..+.++.
T Consensus       142 -~~H~Al~DA~ata~l~~~l~~~~  164 (309)
T PRK06195        142 -KHHDALADAMACSNILLNISKEL  164 (309)
T ss_pred             -cccCCHHHHHHHHHHHHHHHHHh
Confidence             49999999999999999998764

>PRK06807 DNA polymerase III subunit epsilon; Validated

Probab=99.94  E-value=4e-27  Score=216.98  Aligned_cols=157  Identities=22%  Similarity=0.407  Sum_probs=138.2

Q ss_pred             CCCceeeccCccccccC--CCCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHH
Q 018586          133 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  208 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~  208 (353)
                      -..+++++|+||||.++  ++++++ ++|.+.  .|.+  .|+.+|+|..++++.++++||||+++|+++|++.+|+++|
T Consensus         6 ~~~~~Vv~DlETTGl~p~~~eIIEI-gaV~v~--~g~i~~~f~~lVkP~~~I~~~a~~ihGIT~e~l~~~~~~~evl~~f   82 (313)
T PRK06807          6 LPLDYVVIDFETTGFNPYNDKIIQV-AAVKYR--NHELVDQFVSYVNPERPIPDRITSLTGITNYRVSDAPTIEEVLPLF   82 (313)
T ss_pred             CCCCEEEEEEECCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECcCCCCCHhhhccCCCCHHHHhCCCCHHHHHHHH
Confidence            35679999999999874  567777 677773  5555  4899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-------CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCC
Q 018586          209 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGY  281 (353)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~  281 (353)
                      .+|+              ++.+|||||+.||+.||.       +..+..+++||+.+++.+.+....++|+.|++.| |+
T Consensus        83 ~~fl--------------~~~~lVaHNa~FD~~fL~~~~~~~gl~~~~~~~iDtl~la~~~~~~~~~~kL~~L~~~l-gi  147 (313)
T PRK06807         83 LAFL--------------HTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRML-GI  147 (313)
T ss_pred             HHHH--------------cCCeEEEEcHHHHHHHHHHHHHHcCCCCCCCCEeeHHHHHHHHhCCCCCCCHHHHHHHc-CC
Confidence            9999              788999999999999998       2345577999999999888877889999999988 99


Q ss_pred             cCCCCCCChHHHHHHHHHHHHHHHhchh
Q 018586          282 DIQSGVHDPYEDCVSVMRLYKRFRRQDH  309 (353)
Q Consensus       282 ~~~~~~H~Al~Da~~t~~l~~~~~~~~~  309 (353)
                      +.  .+|+|+.||++|++||.++.....
T Consensus       148 ~~--~~H~Al~DA~~ta~l~~~l~~~~~  173 (313)
T PRK06807        148 RL--SSHNAFDDCITCAAVYQKCASIEE  173 (313)
T ss_pred             CC--CCcChHHHHHHHHHHHHHHHHhhh
Confidence            96  699999999999999999998763

>PRK07983 exodeoxyribonuclease X; Provisional

Probab=99.94  E-value=5.5e-27  Score=205.67  Aligned_cols=146  Identities=18%  Similarity=0.192  Sum_probs=125.5

Q ss_pred             eeeccCccccccCCCCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhc
Q 018586          137 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  214 (353)
Q Consensus       137 ~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~~  214 (353)
                      ++++|+||||++ ..++|+ +.|.+.  +|++  .|+.+|+|..+|++.++.|||||++||+++|++.+|+++   |+  
T Consensus         2 ~~vlD~ETTGl~-~~IieI-g~v~v~--~~~i~~~~~~lv~P~~~i~~~~~~ihgIt~e~v~~ap~~~ev~~~---~~--   72 (219)
T PRK07983          2 LRVIDTETCGLQ-GGIVEI-ASVDVI--DGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPH---YY--   72 (219)
T ss_pred             eEEEEEECCCCC-CCCEEE-EEEEEE--CCEEEEEEEEEECcCCCCCHHHhhcCCCCHHHHcCCCCHHHHHHH---Hc--
Confidence            689999999985 357777 777774  4555  489999999999999999999999999999999999886   46  


Q ss_pred             CCCCcccccCCCCCcEEEecccHHHHHHhcCcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCC----CCCCCh
Q 018586          215 GESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ----SGVHDP  290 (353)
Q Consensus       215 ~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~----~~~H~A  290 (353)
                                  ++.+|||||+.||+.||..  ....++||+.+++.++|... ++|..|+..| |++..    ..+|||
T Consensus        73 ------------~~~~lVaHNa~FD~~~L~~--~~~~~idTl~lar~l~p~~~-~~l~~L~~~~-~l~~~~~~~~~aHrA  136 (219)
T PRK07983         73 ------------GSEWYVAHNASFDRRVLPE--MPGEWICTMKLARRLWPGIK-YSNMALYKSR-KLNVQTPPGLHHHRA  136 (219)
T ss_pred             ------------CCCEEEEeCcHhhHHHHhC--cCCCcEeHHHHHHHHccCCC-CCHHHHHHHc-CCCCCCCCCCCCCcH
Confidence                        7789999999999999973  22458999999999988755 9999999988 87642    349999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 018586          291 YEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       291 l~Da~~t~~l~~~~~~~  307 (353)
                      ++||++|+.||.++.+.
T Consensus       137 l~Da~ata~ll~~l~~~  153 (219)
T PRK07983        137 LYDCYITAALLIDIMNT  153 (219)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999964

>PRK06310 DNA polymerase III subunit epsilon; Validated

Probab=99.94  E-value=1.1e-26  Score=208.59  Aligned_cols=158  Identities=17%  Similarity=0.290  Sum_probs=131.4

Q ss_pred             CCceeeccCccccccC--CCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 018586          134 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~  211 (353)
                      .++++++|+||||+++  ++++|+ +.|.+........++.+|+|..+|++.++.+||||+|+|+++|++.+|+++|.+|
T Consensus         6 ~~~~v~~D~ETTGl~~~~d~IIEI-a~v~v~~~~~~~~~~~li~P~~~I~~~a~~ihgIt~e~v~~~p~~~ev~~~~~~f   84 (250)
T PRK06310          6 DTEFVCLDCETTGLDVKKDRIIEF-AAIRFTFDEVIDSVEFLINPERVVSAESQRIHHISDAMLRDKPKIAEVFPQIKGF   84 (250)
T ss_pred             CCcEEEEEEeCCCCCCCCCeEEEE-EEEEEECCeEEEEEEEEECcCCCCCHhhhhccCcCHHHHhCCCCHHHHHHHHHHH
Confidence            4679999999999864  567777 6666632221225899999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcccccCCCCC-cEEEecccHHHHHHhcCc-------CC--CCceeecccccCCcccCCCCCcHHHHHHHHhCC
Q 018586          212 LNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLRMN-------YP--DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGY  281 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~-~~lvgh~~~~D~~~l~~~-------~~--~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~  281 (353)
                      +              ++ .+|||||+.||+.||...       .+  ...++||+.+++.+ +...+++|..|+++| |+
T Consensus        85 l--------------~~~~~lvghn~~FD~~~L~~~~~r~g~~~~~~~~~~iDtl~lar~~-~~~~~~~L~~l~~~~-g~  148 (250)
T PRK06310         85 F--------------KEGDYIVGHSVGFDLQVLSQESERIGETFLSKHYYIIDTLRLAKEY-GDSPNNSLEALAVHF-NV  148 (250)
T ss_pred             h--------------CCCCEEEEECHHHHHHHHHHHHHHcCCCccccCCcEEehHHHHHhc-ccCCCCCHHHHHHHC-CC
Confidence            9              54 799999999999999822       21  25689999998864 444678999999998 99


Q ss_pred             cCCCCCCChHHHHHHHHHHHHHHHhchh
Q 018586          282 DIQSGVHDPYEDCVSVMRLYKRFRRQDH  309 (353)
Q Consensus       282 ~~~~~~H~Al~Da~~t~~l~~~~~~~~~  309 (353)
                      +. .++|+|++||.+|++||..+.++..
T Consensus       149 ~~-~~aH~Al~Da~at~~vl~~l~~~~~  175 (250)
T PRK06310        149 PY-DGNHRAMKDVEINIKVFKHLCKRFR  175 (250)
T ss_pred             CC-CCCcChHHHHHHHHHHHHHHHHhcc
Confidence            84 4599999999999999999987643

>PRK06063 DNA polymerase III subunit epsilon; Provisional

Probab=99.94  E-value=1.1e-26  Score=214.58  Aligned_cols=159  Identities=22%  Similarity=0.281  Sum_probs=134.4

Q ss_pred             cCCCceeeccCccccccCC--CCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHH
Q 018586          132 CRGPKAVAMDCEMVGGGSN--GTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDK  207 (353)
Q Consensus       132 ~~~~~~~~~D~Ettg~~~~--~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~  207 (353)
                      ..+.+|+++|+||||+++.  +++++ +.|.+ +.+|++  .|..+|+|..  ++..+.|||||+++|.++|+|.+++++
T Consensus        12 ~~~~~fvvlD~ETTGl~p~~d~IIeI-gav~v-~~~g~i~~~~~~lv~P~~--~~~~~~IhGIt~e~l~~ap~f~ev~~~   87 (313)
T PRK06063         12 HYPRGWAVVDVETSGFRPGQARIISL-AVLGL-DADGNVEQSVVTLLNPGV--DPGPTHVHGLTAEMLEGQPQFADIAGE   87 (313)
T ss_pred             CCCCCEEEEEEECCCCCCCCCEEEEE-EEEEE-ECCceeeeEEEEEECcCC--CCCCeecCCCCHHHHhCCCCHHHHHHH
Confidence            3456799999999998754  56666 55555 345666  4899999975  356789999999999999999999999


Q ss_pred             HHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-------CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhC
Q 018586          208 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLG  280 (353)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~  280 (353)
                      |.+|+              ++.+|||||+.||+.||+       ...|...++||+.+++.+.+...+++|.+|+++| |
T Consensus        88 l~~~l--------------~~~~lVaHNa~FD~~fL~~~~~r~g~~~~~~~~ldTl~lar~~~~~~~~~kL~~l~~~~-g  152 (313)
T PRK06063         88 VAELL--------------RGRTLVAHNVAFDYSFLAAEAERAGAELPVDQVMCTVELARRLGLGLPNLRLETLAAHW-G  152 (313)
T ss_pred             HHHHc--------------CCCEEEEeCHHHHHHHHHHHHHHcCCCCCCCCEEehHHHHHHhccCCCCCCHHHHHHHc-C
Confidence            99999              889999999999999998       2234456899999999887777899999999998 9


Q ss_pred             CcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          281 YDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       281 ~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      ++ ..++|+|++||++|++||..++++..+
T Consensus       153 i~-~~~~H~Al~DA~ata~l~~~ll~~~~~  181 (313)
T PRK06063        153 VP-QQRPHDALDDARVLAGILRPSLERARE  181 (313)
T ss_pred             CC-CCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            88 456999999999999999999888654

>PRK06309 DNA polymerase III subunit epsilon; Validated

Probab=99.94  E-value=2e-26  Score=205.02  Aligned_cols=154  Identities=23%  Similarity=0.446  Sum_probs=131.2

Q ss_pred             CceeeccCccccccC--CCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHH
Q 018586          135 PKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (353)
Q Consensus       135 ~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~  212 (353)
                      .+++++|+||||++.  ++++|+ +.   ++......|+.+|+|..+|++.+++|||||+++|+++|+|.+|+++|.+|+
T Consensus         2 ~~~vv~D~ETTGl~~~~d~IIei-g~---v~~~~~~~f~~lv~P~~~I~~~a~~IhGIt~e~v~~~p~f~ev~~~~~~fi   77 (232)
T PRK06309          2 PALIFYDTETTGTQIDKDRIIEI-AA---YNGVTSESFQTLVNPEIPIPAEASKIHGITTDEVADAPKFPEAYQKFIEFC   77 (232)
T ss_pred             CcEEEEEeeCCCCCCCCCEEEEE-EE---EcCccccEEEEEeCCCCCCChhHHhhcCCCHHHHhCCCCHHHHHHHHHHHH
Confidence            358999999999864  455555 33   454445579999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcccccCCCC-CcEEEecc-cHHHHHHhc-------CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcC
Q 018586          213 NNGESTGRLMLDDGK-ARLLVGHG-LEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDI  283 (353)
Q Consensus       213 ~~~~~~~~~~~~~~~-~~~lvgh~-~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~  283 (353)
                                    + +.+||||| +.||+.||+       +..+...++||+.+++.+.+...+++|..|+..| |++.
T Consensus        78 --------------~~~~~lVaHN~~~FD~~~L~~e~~r~g~~~~~~~~iDt~~l~~~~~~~~~~~~L~~l~~~~-~~~~  142 (232)
T PRK06309         78 --------------GTDNILVAHNNDAFDFPLLRKECRRHGLEPPTLRTIDSLKWAQKYRPDLPKHNLQYLRQVY-GFEE  142 (232)
T ss_pred             --------------cCCCEEEEeCCHHHHHHHHHHHHHHcCCCCCCCcEEeHHHHHHHHcCCCCCCCHHHHHHHc-CCCC
Confidence                          4 46999999 489999998       2234467899999998888877789999999998 8883


Q ss_pred             CCCCCChHHHHHHHHHHHHHHHhch
Q 018586          284 QSGVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       284 ~~~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                       .++|+|++||.+|++||.++.++.
T Consensus       143 -~~aH~Al~Da~~t~~vl~~l~~~~  166 (232)
T PRK06309        143 -NQAHRALDDVITLHRVFSALVGDL  166 (232)
T ss_pred             -CCCCCcHHHHHHHHHHHHHHHHHH
Confidence             459999999999999999998764

>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family

Probab=99.94  E-value=1.7e-26  Score=203.63  Aligned_cols=164  Identities=18%  Similarity=0.298  Sum_probs=135.0

Q ss_pred             CCCceeeccCccccccCC-CCccceeEEeeecCCCC-eEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHH
Q 018586          133 RGPKAVAMDCEMVGGGSN-GTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~~~-~~~~il~~v~ivd~~g~-~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~  210 (353)
                      ....|+++|+||||+++. .++|+ ++|.+.+.... ..|+.+|+|..++++.++.+||||+++|.++|++.+|+++|.+
T Consensus         5 ~~~~fvv~D~ETTGl~~~~~IIeI-gav~v~~~~~~~~~f~~li~P~~~i~~~a~~ihGIt~e~l~~~p~~~ev~~~~~~   83 (217)
T TIGR00573         5 VLDTETTGDNETTGLYAGHDIIEI-GAVEIINRRITGNKFHTYIKPDRPIDPDAIKIHGITDDMLKDKPDFKEIAEDFAD   83 (217)
T ss_pred             EecCEEEEEecCCCCCCCCCEEEE-EEEEEECCCEeeeEEEEEECcCCCCCHHHHhhcCCCHHHHcCCCCHHHHHHHHHH
Confidence            345799999999998743 26666 77776543222 2689999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc--------CCCCceeecccccCCcccCC--CCCcHHHHHHHHhC
Q 018586          211 ILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN--------YPDHMLRDTAKYRPLMKTNL--VSHSLKYLTRTYLG  280 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~--------~~~~~~~Dt~~l~~~~~~~~--~~~~L~~l~~~~~~  280 (353)
                      |+              ++.++||||+.||+.||+..        .+...++||..+++.+.+..  .+++|..++++| |
T Consensus        84 ~~--------------~~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~dtl~l~~~~~~~~~~~~~~L~~l~~~~-g  148 (217)
T TIGR00573        84 YI--------------RGAELVIHNASFDVGFLNYEFSKLYKVEPKTNDVIDTTDTLQYARPEFPGKRNTLDALCKRY-E  148 (217)
T ss_pred             Hh--------------CCCEEEEeccHHHHHHHHHHHHHhcCCCCCccceecHHHHHHHHHHhCCCCCCCHHHHHHHc-C
Confidence            99              78899999999999999822        12256789988877766532  468999999999 8


Q ss_pred             CcCCC-CCCChHHHHHHHHHHHHHHHhchhhhh
Q 018586          281 YDIQS-GVHDPYEDCVSVMRLYKRFRRQDHQVE  312 (353)
Q Consensus       281 ~~~~~-~~H~Al~Da~~t~~l~~~~~~~~~~~~  312 (353)
                      ++... ++|+|++||.+|++||..+..+..+..
T Consensus       149 l~~~~~~~H~Al~DA~~ta~l~~~l~~~~~~~~  181 (217)
T TIGR00573       149 ITNSHRALHGALADAFILAKLYLVMTGKQTKYG  181 (217)
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHHHHhcchhhc
Confidence            88432 589999999999999999999876633

All proteins in this family for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the n-terminal region of DinG from some low GC gram positive bacteria. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK07748 sporulation inhibitor KapD; Provisional

Probab=99.94  E-value=1.3e-26  Score=203.06  Aligned_cols=159  Identities=18%  Similarity=0.253  Sum_probs=130.1

Q ss_pred             CCceeeccCcccccc--------CCCCccceeEEeeecCCCCe--EEeeeccCCC--CccccccccCCCCHhhhcCCCCh
Q 018586          134 GPKAVAMDCEMVGGG--------SNGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPL  201 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~--------~~~~~~il~~v~ivd~~g~~--~~~~lv~P~~--~i~~~~~~~~GIt~e~l~~~~~~  201 (353)
                      .+.|+++|+||||.+        .++++|+ ++|.+.  +|++  .|+.||+|..  +++++++++||||+++|+++|+|
T Consensus         3 ~~~~vvlD~EtTg~~~~~~~~~~~~eIIeI-GaV~v~--~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~l~~ap~~   79 (207)
T PRK07748          3 EQQFLFLDFEFTMPQHKKKPKGFFPEIIEV-GLVSVV--GCEVEDTFSSYVKPKTFPSLTERCKSFLGITQEDVDKGISF   79 (207)
T ss_pred             cceEEEEEeecCCcCCCCCCCCCCCceEEE-eEEEEe--cCcChhhhcceECCCccCccChhhhhhcCcCHHHHccCCCH
Confidence            457999999999854        2457777 778774  4444  5999999986  69999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcccccCCCCC-cEEEecccHHHHHHhc-------CcCCC-CceeecccccCCcccCCCCCcHH
Q 018586          202 KEVKDKILEILNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLR-------MNYPD-HMLRDTAKYRPLMKTNLVSHSLK  272 (353)
Q Consensus       202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~lvgh~~~~D~~~l~-------~~~~~-~~~~Dt~~l~~~~~~~~~~~~L~  272 (353)
                      ++|+++|.+|+              ++ ..+|+|+..||+.||+       +..|. ..++|++.+++.+++....++|.
T Consensus        80 ~evl~~f~~~~--------------~~~~~~iv~~~~fD~~fL~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~L~  145 (207)
T PRK07748         80 EELVEKLAEYD--------------KRCKPTIVTWGNMDMKVLKHNCEKAGVPFPFKGQCRDLSLEYKKFFGERNQTGLW  145 (207)
T ss_pred             HHHHHHHHHHh--------------CcCCeEEEEECHHHHHHHHHHHHHcCCCCcccccceeHHHHHHHHhCcCCCCCHH
Confidence            99999999999              55 3444455799999997       22343 46788888877777666679999


Q ss_pred             HHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          273 YLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       273 ~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      ++++.| |++..+.+|+|++||++|++||.++.++.+.
T Consensus       146 ~~~~~~-gi~~~~~~H~Al~DA~~ta~l~~~l~~~~~~  182 (207)
T PRK07748        146 KAIEEY-GKEGTGKHHCALDDAMTTYNIFKLVEKDKEY  182 (207)
T ss_pred             HHHHHc-CCCCCCCCcChHHHHHHHHHHHHHHHhCcce
Confidence            999998 9995555899999999999999999988653

>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins

Probab=99.94  E-value=1.7e-26  Score=195.95  Aligned_cols=149  Identities=21%  Similarity=0.355  Sum_probs=125.7

Q ss_pred             eeeccCccccccC---CCCccceeEEeeecCCCCe---EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHH
Q 018586          137 AVAMDCEMVGGGS---NGTLDLCARVCLVDEDENV---IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (353)
Q Consensus       137 ~~~~D~Ettg~~~---~~~~~il~~v~ivd~~g~~---~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~  210 (353)
                      ++++|+||||+++   +.++|+ +.+.+.+  +.+   .|+.+|+|..++++.++++||||++++++++++.+|+.+|.+
T Consensus         1 ~v~~D~ETTGl~~~~~~~iiei-g~v~v~~--~~~~~~~~~~~v~P~~~i~~~~~~ihGIt~e~l~~~~~~~~v~~~l~~   77 (167)
T cd06131           1 QIVLDTETTGLDPREGHRIIEI-GCVELIN--RRLTGNTFHVYINPERDIPEEAFKVHGITDEFLADKPKFAEIADEFLD   77 (167)
T ss_pred             CEEEEeeCCCCCCCCCCeEEEE-EEEEEEC--CcEeccEEEEEECCCCCCCHHHHHHhCCCHHHHhcCCCHHHHHHHHHH
Confidence            5789999999975   456777 6776633  332   589999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc-------C---CCCceeecccccCCcccCCCCCcHHHHHHHHhC
Q 018586          211 ILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------Y---PDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLG  280 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-------~---~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~  280 (353)
                      |+              ++.++||||+.||+.||+..       .   ....++||+.+++...+. ..++|++++++| |
T Consensus        78 ~l--------------~~~~lv~hn~~fD~~~l~~~~~~~~~~~~~~~~~~~idt~~~~~~~~~~-~~~~L~~l~~~~-~  141 (167)
T cd06131          78 FI--------------RGAELVIHNASFDVGFLNAELSLLGLGKKIIDFCRVIDTLALARKKFPG-KPNSLDALCKRF-G  141 (167)
T ss_pred             HH--------------CCCeEEEeChHHhHHHHHHHHHHhCCCcccccCCCceEhHHHHHHHcCC-CCCCHHHHHHHC-C
Confidence            99              77899999999999999721       1   125689999998877654 467999999999 9


Q ss_pred             CcCCC-CCCChHHHHHHHHHHHHHH
Q 018586          281 YDIQS-GVHDPYEDCVSVMRLYKRF  304 (353)
Q Consensus       281 ~~~~~-~~H~Al~Da~~t~~l~~~~  304 (353)
                      ++... ++|+|+.||++|++||.++
T Consensus       142 i~~~~~~~H~Al~Da~~~a~l~~~l  166 (167)
T cd06131         142 IDNSHRTLHGALLDAELLAEVYLEL  166 (167)
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHHh
Confidence            88653 4899999999999999876

This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon

>PRK07883 hypothetical protein; Validated

Probab=99.94  E-value=3.1e-26  Score=226.66  Aligned_cols=164  Identities=22%  Similarity=0.337  Sum_probs=141.7

Q ss_pred             cccccCCCceeeccCccccccC--CCCccceeEEeeecCCCCeE--EeeeccCCCCccccccccCCCCHhhhcCCCChHH
Q 018586          128 EKRTCRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKE  203 (353)
Q Consensus       128 e~~~~~~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~~--~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~  203 (353)
                      -+++.....|+++|+||||+++  +.++++ ++|.+  .+|.++  |+.+|+|..++++.++.+||||+++|+++|++++
T Consensus         8 ~~~~~~~~~~Vv~D~ETTGl~p~~~~IIEI-gaV~v--~~g~iv~~f~~lV~P~~~i~~~~~~itGIt~e~l~~ap~~~e   84 (557)
T PRK07883          8 LGTPLRDVTFVVVDLETTGGSPAGDAITEI-GAVKV--RGGEVLGEFATLVNPGRPIPPFITVLTGITTAMVAGAPPIEE   84 (557)
T ss_pred             hCCCCcCCCEEEEEEecCCCCCCCCeEEEE-EEEEE--ECCEEEEEEEEEECCCCCCChhHHhhcCCCHHHHhCCCCHHH
Confidence            3456777899999999999875  467777 67777  355554  8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-------CcCCCCceeecccccCCccc--CCCCCcHHHH
Q 018586          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKT--NLVSHSLKYL  274 (353)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~--~~~~~~L~~l  274 (353)
                      |+.+|.+|+              ++.++||||+.||+.||+       +..+...++||+.+++.+.+  ...+++|.+|
T Consensus        85 vl~~f~~fl--------------~~~~lVaHNa~FD~~fL~~~~~r~g~~~~~~~~iDTl~lar~l~~~~~~~~~~L~~L  150 (557)
T PRK07883         85 VLPAFLEFA--------------RGAVLVAHNAPFDIGFLRAAAARCGYPWPGPPVLCTVRLARRVLPRDEAPNVRLSTL  150 (557)
T ss_pred             HHHHHHHHh--------------cCCEEEEeCcHHHHHHHHHHHHHcCCCCCCCCcEecHHHHHHhcccCCCCCCCHHHH
Confidence            999999999              788999999999999998       33444668999999988776  6678999999


Q ss_pred             HHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          275 TRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       275 ~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      ++++ |++. .++|+|++||.+|++||.++..+...
T Consensus       151 ~~~~-gi~~-~~~H~Al~DA~ata~l~~~l~~~~~~  184 (557)
T PRK07883        151 ARLF-GATT-TPTHRALDDARATVDVLHGLIERLGN  184 (557)
T ss_pred             HHHC-Cccc-CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9987 9985 45899999999999999999988754

>PRK09145 DNA polymerase III subunit epsilon; Validated

Probab=99.94  E-value=5.8e-26  Score=198.33  Aligned_cols=156  Identities=19%  Similarity=0.329  Sum_probs=127.1

Q ss_pred             CCCceeeccCccccccC--CCCccceeEEeeecCCCCe----EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHH
Q 018586          133 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV----IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~----~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~  206 (353)
                      .+.+++++|+||||+++  +.++++ ++|.+.  .+.+    .|+.+|+|..++++.++++||||+++|++++++.+|++
T Consensus        27 ~~~~~vviD~ETTGl~~~~d~IieI-gaV~~~--~~~~~~~~~f~~~i~p~~~i~~~~~~ihGIt~~~l~~~~~~~~vl~  103 (202)
T PRK09145         27 PPDEWVALDCETTGLDPRRAEIVSI-AAVKIR--GNRILTSERLELLVRPPQSLSAESIKIHRLRHQDLEDGLSEEEALR  103 (202)
T ss_pred             CCCCEEEEEeECCCCCCCCCceEEE-EEEEEE--CCEEeecCceEEEECCCCCCCHhHhhhcCcCHHHHhcCCCHHHHHH
Confidence            44589999999999874  566666 666663  2332    47899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcC------cCC-CCceeecccccCC-----cccCCCCCcHHHH
Q 018586          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM------NYP-DHMLRDTAKYRPL-----MKTNLVSHSLKYL  274 (353)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~------~~~-~~~~~Dt~~l~~~-----~~~~~~~~~L~~l  274 (353)
                      +|.+|+              ++.+|||||+.||+.||..      ..+ ...++|+..++..     +.+...+++|+++
T Consensus       104 ~~~~~i--------------~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~~~~~~~~~L~~l  169 (202)
T PRK09145        104 QLLAFI--------------GNRPLVGYYLEFDVAMLNRYVRPLLGIPLPNPLIEVSALYYDKKERHLPDAYIDLRFDAI  169 (202)
T ss_pred             HHHHHH--------------cCCeEEEeCHHHHHHHHHHHHHHhcCCCCCCCeeeHHHHHHHHhhccCCCcccCCCHHHH
Confidence            999999              7889999999999999971      122 2457899766421     2223346899999


Q ss_pred             HHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhc
Q 018586          275 TRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       275 ~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~  307 (353)
                      ++.| |++. .++|+|++||++|++||.++.+.
T Consensus       170 ~~~~-gi~~-~~~H~Al~DA~ata~l~~~l~~~  200 (202)
T PRK09145        170 LKHL-DLPV-LGRHDALNDAIMAALIFLRLRKG  200 (202)
T ss_pred             HHHc-CCCC-CCCCCcHHHHHHHHHHHHHHHhc
Confidence            9998 9985 56899999999999999998754

>PRK06722 exonuclease; Provisional

Probab=99.93  E-value=4.1e-26  Score=205.60  Aligned_cols=158  Identities=16%  Similarity=0.172  Sum_probs=128.2

Q ss_pred             CCceeeccCcccccc-----CCCCccceeEEeeecCCCCeE--EeeeccCCCCccccccccCCCCHhhhcCCCChHHHHH
Q 018586          134 GPKAVAMDCEMVGGG-----SNGTLDLCARVCLVDEDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~-----~~~~~~il~~v~ivd~~g~~~--~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~  206 (353)
                      ...|+++|+|||+..     .++++|+ |+|.+.+..++++  |++||+|..+|+++++.+||||++||.+||++++|+.
T Consensus         4 ~~~~vViD~ETT~~p~~~~~~deIIEI-GAVkV~~g~i~Ivd~F~sLV~P~~~I~~~i~~LTGIT~emV~~AP~f~eVl~   82 (281)
T PRK06722          4 ATHFIVFDIERNFRPYKSEDPSEIVDI-GAVKIEASTMKVIGEFSELVKPGARLTRHTTKLTGITKKDLIGVEKFPQIIE   82 (281)
T ss_pred             CCEEEEEEeeCCCCCCCCCCCCeEEEE-EEEEEECCceeEEeeEEEEECCCCcCCHhHhhhcCCCHHHHcCCCCHHHHHH
Confidence            456999999999642     2578888 8888855444654  9999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcC-------cCCC---CceeecccccCCcccC--CCCCcHHHH
Q 018586          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-------NYPD---HMLRDTAKYRPLMKTN--LVSHSLKYL  274 (353)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-------~~~~---~~~~Dt~~l~~~~~~~--~~~~~L~~l  274 (353)
                      +|.+|+              ++.++|+||+.||++||..       ..|.   ..++|++.++...++.  ...++|..|
T Consensus        83 ef~~fi--------------g~~~lvahna~FD~~FL~~~l~~~gi~~p~~~~~~~idl~~la~~~~~~l~~~~~sL~~l  148 (281)
T PRK06722         83 KFIQFI--------------GEDSIFVTWGKEDYRFLSHDCTLHSVECPCMEKERRIDLQKFVFQAYEELFEHTPSLQSA  148 (281)
T ss_pred             HHHHHH--------------CCCcEEEEEeHHHHHHHHHHHHHcCCCCCcccccchhHHHHHHHHHhhhhccCCCCHHHH
Confidence            999999              7667778888999999992       2332   2247777665433332  245789999


Q ss_pred             HHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhc
Q 018586          275 TRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       275 ~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~  307 (353)
                      ++.| |++..+.+|+|++||.+|+.||.++..+
T Consensus       149 ~~~l-gL~~~g~~HrAL~DA~~TA~L~l~l~~~  180 (281)
T PRK06722        149 VEQL-GLIWEGKQHRALADAENTANILLKAYSE  180 (281)
T ss_pred             HHHC-CCCCCCCCcCcHHHHHHHHHHHHHHhcc
Confidence            9999 9996666999999999999999999854

>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T

Probab=99.93  E-value=7.8e-26  Score=195.10  Aligned_cols=165  Identities=22%  Similarity=0.258  Sum_probs=126.8

Q ss_pred             CCceeeccCccccccC--CCCccceeEEeeecC-CCCe----EEeeeccC--CCCccccccccCCCCHhh-hcCCCChHH
Q 018586          134 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDE-DENV----IFHTYVQP--QLPVTNYRYEVTGLTEED-IKNAMPLKE  203 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~-~g~~----~~~~lv~P--~~~i~~~~~~~~GIt~e~-l~~~~~~~~  203 (353)
                      +-.++++|+||||+++  ++++|+ ++|.+.+. +|.+    .|+.+|+|  ..+|++.+++|||||+++ ++++++..+
T Consensus         4 ~~~~vv~D~ETTGl~~~~d~Iiei-gav~v~~~~~~~i~~~~~f~~lv~P~~~~~i~~~~~~ihGIt~~~~~~~~~~~~~   82 (189)
T cd06134           4 GFLPVVVDVETGGFNPQTDALLEI-AAVTLEMDEQGNLYPDETFHFHILPFEGANLDPAALEFNGIDPFHPFRFAVDEKE   82 (189)
T ss_pred             cceeEEEEecCCCCCCCCCeEEEE-EEEEEEECCCCceeccceEEEEEcCCCCCCCCHHHHhhcCCCchhhhccccchHH
Confidence            3457899999999874  567777 78888643 4543    58999999  578999999999999986 677777777


Q ss_pred             HHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcC-----cC---C--CCceeecccccCCcccCCCCCcHHH
Q 018586          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-----NY---P--DHMLRDTAKYRPLMKTNLVSHSLKY  273 (353)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-----~~---~--~~~~~Dt~~l~~~~~~~~~~~~L~~  273 (353)
                      ++.++.+++.+.-     ...+.++.+|||||+.||+.||+.     ..   +  ...++||..+++.+++   +++|..
T Consensus        83 ~~~~~~~~l~~~~-----~~~~~~~~~lVaHna~FD~~fL~~~~~~~~~~~~~~~~~~~lDt~~la~~~~~---~~~L~~  154 (189)
T cd06134          83 ALKEIFKPIRKAL-----KAQGCTRAILVGHNAHFDLGFLNAAVARCKIKRNPFHPFSTFDTATLAGLAYG---QTVLAK  154 (189)
T ss_pred             HHHHHHHHHHHHH-----hhcccCCCeEEEecchhhHHHHHHHHHHhCCCCCCCCCCcEEEHHHHHHHHhC---CCcHHH
Confidence            7777766662100     000013679999999999999981     11   2  2457999999988765   468999


Q ss_pred             HHHHHhCCcCC-CCCCChHHHHHHHHHHHHHHHhch
Q 018586          274 LTRTYLGYDIQ-SGVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       274 l~~~~~~~~~~-~~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                      +|++| |+++. ..+|+|++||.+|++||.++.++|
T Consensus       155 l~~~~-gi~~~~~~~H~Al~DA~ata~lf~~l~~~~  189 (189)
T cd06134         155 ACQAA-GIEFDNKEAHSALYDTQKTAELFCKIVNRW  189 (189)
T ss_pred             HHHHC-CCCCCCCCCcChHHHHHHHHHHHHHHHHhC
Confidence            99998 99864 358999999999999999999875

RNase T is a DEDDh-type DnaQ-like 3'-5' exoribonuclease E implicated in the 3' maturation of small stable RNAs and 23srRNA, and in the end turnover of tRNA. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase T is related to the proofreading domain of DNA polymerase III. Despite its important role, RNase T is mainly found only in gammaproteobacteria. It is speculated that it might have originated from DNA polymerase III at the time the gamma division of proteobacteria diverged from other bacteria. RNase T is a homodimer with the catalytic residues of one monomer contacting a large basic patch on the other monomer to form a functional active site.

>TIGR01298 RNaseT ribonuclease T

Probab=99.93  E-value=7.6e-26  Score=196.72  Aligned_cols=171  Identities=22%  Similarity=0.277  Sum_probs=132.5

Q ss_pred             cCCCceeeccCccccccC--CCCccceeEEeee-cCCCCe----EEeeeccCC--CCccccccccCCCCHh-hhcCCCCh
Q 018586          132 CRGPKAVAMDCEMVGGGS--NGTLDLCARVCLV-DEDENV----IFHTYVQPQ--LPVTNYRYEVTGLTEE-DIKNAMPL  201 (353)
Q Consensus       132 ~~~~~~~~~D~Ettg~~~--~~~~~il~~v~iv-d~~g~~----~~~~lv~P~--~~i~~~~~~~~GIt~e-~l~~~~~~  201 (353)
                      +...-++++|+||||+++  ++++|+ ++|.+. +.+|.+    .|+++|+|.  .+|++.+..|||||++ ++.+++++
T Consensus         5 ~~~~~~vv~D~ETTGl~~~~d~IieI-gav~v~~~~~g~i~~~~~f~~~v~p~p~~~i~~~a~~ihGIt~~~~~~~~~~~   83 (200)
T TIGR01298         5 FRGYLPVVVDVETGGFNAKTDALLEI-AAITLKMDEQGWLFPDTTLHFHVEPFEGANIQPEALEFTGIDLDHPLRGAVSE   83 (200)
T ss_pred             hcCCeeEEEEeeCCCCCCCCCeEEEE-EEEEEEEcCCCcEeecceeEEEEcCCCCCCCCHHHHHccCCChhhhhhcCcch
Confidence            345668999999999974  467777 777775 335555    288999984  7899999999999976 68999999


Q ss_pred             HHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc-----C-----CCCceeecccccCCcccCCCCCcH
Q 018586          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-----Y-----PDHMLRDTAKYRPLMKTNLVSHSL  271 (353)
Q Consensus       202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-----~-----~~~~~~Dt~~l~~~~~~~~~~~~L  271 (353)
                      ++++.++.+++...-.     ....++.+|||||+.||++||+..     .     +...++||..+++..++   .++|
T Consensus        84 ~~~~~~~~~~l~~~~~-----~~~~~~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~~lDTl~lar~~~~---~~~L  155 (200)
T TIGR01298        84 YEALHEIFKVVRKAMK-----ASGCQRAILVGHNANFDLGFLNAAVERTSLKRNPFHPFSTFDTATLAGLAYG---QTVL  155 (200)
T ss_pred             HHHHHHHHHHHHHHHH-----hcccCCCEEEEECchhhHHHHHHHHHHhCCCCCCCCCCcEEEHHHHHHHHcC---cccH
Confidence            9988888888721100     000146799999999999999821     1     12458999999987764   3689


Q ss_pred             HHHHHHHhCCcCC-CCCCChHHHHHHHHHHHHHHHhchhhhh
Q 018586          272 KYLTRTYLGYDIQ-SGVHDPYEDCVSVMRLYKRFRRQDHQVE  312 (353)
Q Consensus       272 ~~l~~~~~~~~~~-~~~H~Al~Da~~t~~l~~~~~~~~~~~~  312 (353)
                      ..++++| |+++. ..+|+|++||.+|++||..+.+++.++.
T Consensus       156 ~~l~~~~-gi~~~~~~~H~Al~Da~ata~lf~~l~~~~~~~~  196 (200)
T TIGR01298       156 AKACQAA-GXDFDSTQAHSALYDTEKTAELFCEIVNRWKRLG  196 (200)
T ss_pred             HHHHHHc-CCCccccchhhhHHhHHHHHHHHHHHHHHHHHcc
Confidence            9999998 98864 3599999999999999999999976633

in gamma-subdivision Proteobacteria such as Escherichia coli and Xylella fastidiosa. Ribonuclease T is homologous to the DNA polymerase III alpha chain. It can liberate AMP from the common C-C-A terminus of uncharged tRNA. It appears also to be involved in RNA maturation. It also acts as a 3' to 5' single-strand DNA-specific exonuclease; it is distinctive for its ability to remove residues near a double-stranded stem. Ribonuclease T is a high copy suppressor in E. coli of a uv-repair defect caused by deletion of three other single-stranded DNA exonucleases.

>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]

Probab=99.93  E-value=1.1e-26  Score=233.49  Aligned_cols=161  Identities=23%  Similarity=0.377  Sum_probs=146.3

Q ss_pred             ccCCCceeeccCcccccc--CCCCccceeEEeeecCCCCeE--EeeeccCCCCccccccccCCCCHhhhcCCCChHHHHH
Q 018586          131 TCRGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~~g~~~--~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~  206 (353)
                      ......||+||.||||++  .+.++++ +++.+  .+|+++  |+.+++|..+++...+.+||||++||++++++.+|+.
T Consensus       417 ~l~datyVVfDiETTGLs~~~d~iIE~-aAvKi--kng~iId~f~~Fi~P~~pl~~~~telTgITdeml~~a~~i~~vL~  493 (1444)
T COG2176         417 KLDDATYVVFDIETTGLSPVYDEIIEI-AAVKI--KNGRIIDKFQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLE  493 (1444)
T ss_pred             ccccccEEEEEeecCCcCcccchhhhh-eeeee--eCCcchHHHHHhcCCCCcCchhhhhccccCHHHHcCCccHHHHHH
Confidence            355566999999999987  6778888 89988  778775  8999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc-----CC--CCceeecccccCCcccCCCCCcHHHHHHHHh
Q 018586          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-----YP--DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYL  279 (353)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-----~~--~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~  279 (353)
                      +|.+|+              +++||||||+.||++||+..     .+  .+++|||+.|++.++|...+++|..||++| 
T Consensus       494 kf~~~~--------------~d~IlVAHNasFD~gFl~~~~~k~~~~~~~~pvIDTL~lar~L~P~~ksh~Lg~l~kk~-  558 (1444)
T COG2176         494 KFREFI--------------GDSILVAHNASFDMGFLNTNYEKYGLEPLTNPVIDTLELARALNPEFKSHRLGTLCKKL-  558 (1444)
T ss_pred             HHHHHh--------------cCcEEEeccCccchhHHHHHHHHhCCccccCchhhHHHHHHHhChhhhhcchHHHHHHh-
Confidence            999999              99999999999999999922     22  277999999999999999999999999999 


Q ss_pred             CCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          280 GYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       280 ~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      |+.+ ..+|||..||.+|+.||..+.+...+
T Consensus       559 ~v~l-e~hHRA~yDaeat~~vf~~f~~~~ke  588 (1444)
T COG2176         559 GVEL-ERHHRADYDAEATAKVFFVFLKDLKE  588 (1444)
T ss_pred             CccH-HHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9996 55999999999999999999988766

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated

Probab=99.93  E-value=5.8e-26  Score=234.05  Aligned_cols=158  Identities=21%  Similarity=0.350  Sum_probs=138.1

Q ss_pred             CCceeeccCccccccC-CCCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHH
Q 018586          134 GPKAVAMDCEMVGGGS-NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~-~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~  210 (353)
                      ..+|+++|+||||.++ ++++++ ++|.+  .+|++  .|.++|+|..+|++.++.+||||++||+++|+|++|+++|.+
T Consensus         6 ~~~~vvvD~ETTGl~~~d~IIeI-gaV~v--~~g~i~~~f~~lv~P~~~i~~~~~~ltGIt~e~l~~ap~~~ev~~~~~~   82 (820)
T PRK07246          6 LRKYAVVDLEATGAGPNASIIQV-GIVII--EGGEIIDSYTTDVNPHEPLDEHIKHLTGITDQQLAQAPDFSQVARHIYD   82 (820)
T ss_pred             CCCEEEEEEecCCcCCCCeEEEE-EEEEE--ECCEEEEEEEEEeCcCCCCCHhHhhcCCCCHHHHhcCCCHHHHHHHHHH
Confidence            4679999999999863 567777 77777  35555  489999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcccccCCCCCcEEEecccHHHHHHhcC-----cCC-CCceeecccccCCcccCCCCCcHHHHHHHHhCCcCC
Q 018586          211 ILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-----NYP-DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ  284 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-----~~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~  284 (353)
                      |+              ++.++||||+.||+.||+.     .++ ..+.+||..+++.++|...+++|.+|++.| |++. 
T Consensus        83 ~l--------------~~~~lVaHN~~FD~~fL~~~~~~~g~~~~~~~iDT~~la~~~~p~~~~~~L~~L~~~l-gl~~-  146 (820)
T PRK07246         83 LI--------------EDCIFVAHNVKFDANLLAEALFLEGYELRTPRVDTVELAQVFFPTLEKYSLSHLSREL-NIDL-  146 (820)
T ss_pred             Hh--------------CCCEEEEECcHHHHHHHHHHHHHcCCCCCCCceeHHHHHHHHhCCCCCCCHHHHHHHc-CCCC-
Confidence            99              8899999999999999972     222 256799999999999988899999999988 9985 


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          285 SGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       285 ~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      .++|+|++||++|++||..+..+...
T Consensus       147 ~~~H~Al~DA~ata~L~~~l~~~l~~  172 (820)
T PRK07246        147 ADAHTAIADARATAELFLKLLQKIES  172 (820)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            45999999999999999999987644

>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins

Probab=99.93  E-value=1.1e-25  Score=192.35  Aligned_cols=150  Identities=21%  Similarity=0.263  Sum_probs=118.6

Q ss_pred             eeeccCcccccc---CCCCccceeEEeeecCC---C--------Ce--EEeeeccCCCCccccccccCCCCHhhhcCCCC
Q 018586          137 AVAMDCEMVGGG---SNGTLDLCARVCLVDED---E--------NV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMP  200 (353)
Q Consensus       137 ~~~~D~Ettg~~---~~~~~~il~~v~ivd~~---g--------~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~  200 (353)
                      |+++|+||||++   .++++|+ ++|.+.+..   +        ++  .|+.+|+|..+|++.++.|||||++++.++|+
T Consensus         1 ~vv~D~ETTGl~~~~~d~Iiei-~av~v~~~~~~~~~~~~~~~~~~~~~~~~lv~P~~~I~~~a~~IhGIt~e~l~~~~~   79 (177)
T cd06136           1 FVFLDLETTGLPKHNRPEITEL-CLVAVHRDHLLNTSRDKPALPRVLDKLSLCFNPGRAISPGASEITGLSNDLLEHKAP   79 (177)
T ss_pred             CeEEeeecCCCCCCCCCceEEE-EEEEEecccccccccccccccceeeeeeEEeCCCCcCChhHHHHhCcCHHHHhcCCC
Confidence            689999999996   3577777 788774221   1        12  47999999999999999999999999999998


Q ss_pred             hHH-HHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-------CcCC-CCceeecccccCCcccCCCCCc
Q 018586          201 LKE-VKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYP-DHMLRDTAKYRPLMKTNLVSHS  270 (353)
Q Consensus       201 ~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~-~~~~~Dt~~l~~~~~~~~~~~~  270 (353)
                      +++ +.+.+.+|+...          +++.+|||||+ .||+.||+       ...+ ...++||+.+++.+.+     +
T Consensus        80 ~~~~~~~~l~~f~~~~----------~~~~~lVaHNa~~FD~~fL~~~~~r~~~~~~~~~~~iDtl~l~r~~~~-----~  144 (177)
T cd06136          80 FDSDTANLIKLFLRRQ----------PKPICLVAHNGNRFDFPILRSELERLGTKLPDDILCVDSLPAFRELDQ-----S  144 (177)
T ss_pred             ccHHHHHHHHHHHHhc----------CCCCEEEEcCCcccCHHHHHHHHHHcCCCCCCCCEEEEeHHHHhhhHh-----h
Confidence            874 667777777221          13469999998 89999997       2222 2456899999988765     8


Q ss_pred             HHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHH
Q 018586          271 LKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKR  303 (353)
Q Consensus       271 L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~  303 (353)
                      |+.|+++++|++ ..++|+|++||.+|+++|.+
T Consensus       145 L~~l~~~~~~~~-~~~~H~A~~Da~at~~v~~~  176 (177)
T cd06136         145 LGSLYKRLFGQE-PKNSHTAEGDVLALLKCALH  176 (177)
T ss_pred             HHHHHHHHhCCC-cccccchHHHHHHHHHHHhh
Confidence            999999765998 45599999999999999975

Three prime repair exonuclease (TREX)1 and TREX2 are closely related DEDDh-type DnaQ-like 3'-5' exonucleases. They contain three conserved sequence motifs known as ExoI, II, and III, with a specific Hx(4)D conserved pattern at ExoIII. These motifs contain four conserved acidic residues that participate in coordination of divalent metal ions required for catalysis. Both proteins play a role in the metabolism and clearance of DNA. TREX1 is the major 3'-5' exonuclease activity detected in mammalian cells. Mutations in the human TREX1 gene can cause Aicardi-Goutieres syndrome (AGS), which is characterized by perturbed innate immunity and presents itself as a severe neurological disease. TREX1 degrades ssDNA generated by aberrant replication intermediates to prevent checkpoint activation and autoimmune disease. There are distinct structural differences between TREX1 and TRE

>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases

Probab=99.93  E-value=2.2e-25  Score=189.20  Aligned_cols=155  Identities=29%  Similarity=0.487  Sum_probs=128.7

Q ss_pred             eeeccCccccccCC--CCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhc
Q 018586          137 AVAMDCEMVGGGSN--GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  214 (353)
Q Consensus       137 ~~~~D~Ettg~~~~--~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~~  214 (353)
                      ++++|+||||.++.  .++++ +.|.+.+..-...|+.+|+|..++++.++++||||+++|.+++++.+|+.+|.+|+  
T Consensus         2 ~v~~D~Ettg~~~~~~~Iiei-g~v~~~~~~~~~~f~~~v~p~~~i~~~~~~~~Git~~~l~~~~~~~~~~~~~~~~l--   78 (169)
T smart00479        2 LVVIDCETTGLDPGKDEIIEI-AAVDVDGGRIIVVFDTYVKPDRPITDYATEIHGITPEMLDDAPTFEEVLEELLEFL--   78 (169)
T ss_pred             EEEEEeeCCCCCCCCCeEEEE-EEEEEECCEeEEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHHHHHh--
Confidence            78999999998754  56666 55555322212359999999999999999999999999999999999999999999  


Q ss_pred             CCCCcccccCCCCCcEEEeccc-HHHHHHhcCc-------CCC-CceeecccccCCcccCCCCCcHHHHHHHHhCCcCCC
Q 018586          215 GESTGRLMLDDGKARLLVGHGL-EHDLDSLRMN-------YPD-HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS  285 (353)
Q Consensus       215 ~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~~~-------~~~-~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~  285 (353)
                                  ++.++|+||. .||+.+|+..       .|. ..++|++.+++...+.. .++|+.|++.| |++..+
T Consensus        79 ------------~~~~~v~~n~~~fD~~~L~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~-~~~L~~l~~~~-~~~~~~  144 (169)
T smart00479       79 ------------KGKILVAGNALNFDLRFLKLEHPRLGIKDPPKNPVIDTLKLARALNPGR-KYSLKKLAERL-GLEVIG  144 (169)
T ss_pred             ------------cCCEEEEeCCHHHhHHHHHHHHHHhCCCCCcCCCeeEHHHHHHHHCCCC-CCCHHHHHHHC-CCCCCC
Confidence                        7778888888 9999999921       222 45799999988777653 89999999999 888554


Q ss_pred             CCCChHHHHHHHHHHHHHHHhch
Q 018586          286 GVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       286 ~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                      .+|+|++||++|++||.++.+++
T Consensus       145 ~~H~A~~Da~~t~~l~~~~~~~~  167 (169)
T smart00479      145 RAHRALDDARATAKLFKKLVERL  167 (169)
T ss_pred             CCcCcHHHHHHHHHHHHHHHHHh
Confidence            45999999999999999998875

>PRK05168 ribonuclease T; Provisional

Probab=99.93  E-value=1.8e-25  Score=196.04  Aligned_cols=170  Identities=21%  Similarity=0.291  Sum_probs=133.4

Q ss_pred             ccCCCceeeccCccccccC--CCCccceeEEeee-cCCCCe----EEeeeccC--CCCccccccccCCCCHhh-hcCCCC
Q 018586          131 TCRGPKAVAMDCEMVGGGS--NGTLDLCARVCLV-DEDENV----IFHTYVQP--QLPVTNYRYEVTGLTEED-IKNAMP  200 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~~--~~~~~il~~v~iv-d~~g~~----~~~~lv~P--~~~i~~~~~~~~GIt~e~-l~~~~~  200 (353)
                      ......++++|+||||+++  ++++|+ ++|.+. +.+|.+    .|+++|+|  ..+|++.++.|||||+++ ++++++
T Consensus        13 ~~~~~~~vv~D~ETTGl~~~~d~IieI-gaV~v~~d~~g~i~~~~~f~~lv~P~~~~~i~~~~~~ihGIt~e~~~~~~~~   91 (211)
T PRK05168         13 RFRGFLPVVIDVETAGFNAKTDALLEI-AAVTLKMDEQGWLYPDETLHFHVEPFEGANLEPEALAFNGIDPDNPLRGAVS   91 (211)
T ss_pred             HhcCCceEEEEeeCCCCCCCCCEEEEE-eEEEEEecCCCcEeccceEEEEECCCCCCCCCHHHHhhcCCCchhhhhcCCC
Confidence            3456678999999999874  567777 777775 234543    58999999  468999999999999886 889999


Q ss_pred             hHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc----------CCCCceeecccccCCcccCCCCCc
Q 018586          201 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN----------YPDHMLRDTAKYRPLMKTNLVSHS  270 (353)
Q Consensus       201 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~----------~~~~~~~Dt~~l~~~~~~~~~~~~  270 (353)
                      +.+++.++.+++...-.     ....++.+|||||+.||++||+..          ++..+++||..+++.+++.   .+
T Consensus        92 ~~~~l~~~~~~l~~~~~-----~~~~~~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~~iDt~~lar~~~~~---~~  163 (211)
T PRK05168         92 EKEALHEIFKMVRKGIK-----ASGCNRAILVAHNAHFDLSFLMAAAERAGLKRNPFHPFSTFDTATLSGLALGQ---TV  163 (211)
T ss_pred             hHHHHHHHHHHHHHHHH-----hcccCCceEEEeccHHhHHHHHHHHHHhCCCCCCCCCCcEeeHHHHHHHHcCC---CC
Confidence            99999999998821100     000136899999999999999821          1224589999999877653   58


Q ss_pred             HHHHHHHHhCCcCCC-CCCChHHHHHHHHHHHHHHHhchhh
Q 018586          271 LKYLTRTYLGYDIQS-GVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       271 L~~l~~~~~~~~~~~-~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      |..+++.+ |+++.. .+|+|++||.+|++||.++.++..+
T Consensus       164 L~~l~~~~-gl~~~~~~~H~Al~DA~ata~l~~~l~~~~~~  203 (211)
T PRK05168        164 LAKACQAA-GIEFDNKEAHSALYDTEKTAELFCEIVNRWKR  203 (211)
T ss_pred             HHHHHHHC-CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            99999998 998653 4899999999999999999998765

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated

Probab=99.92  E-value=2e-25  Score=233.69  Aligned_cols=157  Identities=24%  Similarity=0.413  Sum_probs=138.5

Q ss_pred             CceeeccCccccccC---CCCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHH
Q 018586          135 PKAVAMDCEMVGGGS---NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  209 (353)
Q Consensus       135 ~~~~~~D~Ettg~~~---~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~  209 (353)
                      .+|+++|+||||.++   ++++++ +.|.+  .+|++  .|+.+|+|..+|++.++.+||||+++|+++|+|++|+++|.
T Consensus         3 ~~~vvvD~ETTG~~p~~~d~IIei-gav~v--~~~~i~~~f~~~v~P~~~i~~~~~~ltGIt~~~l~~ap~f~ev~~~l~   79 (928)
T PRK08074          3 KRFVVVDLETTGNSPKKGDKIIQI-AAVVV--EDGEILERFSSFVNPERPIPPFITELTGISEEMVKQAPLFEDVAPEIV   79 (928)
T ss_pred             CCEEEEEEeCCCCCCCCCCcEEEE-EEEEE--ECCEEEEEEEEEECcCCCCCHHHhhcCCCCHHHHhcCCCHHHHHHHHH
Confidence            569999999999863   457777 77777  45666  48999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcC-----cC--CCCceeecccccCCcccCCCCCcHHHHHHHHhCCc
Q 018586          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-----NY--PDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-----~~--~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  282 (353)
                      +|+              ++.++||||+.||+.||+.     ++  +..+++||..+++.++|...+++|.+|+++| |++
T Consensus        80 ~~l--------------~~~~~VaHN~~FD~~fL~~~~~~~g~~~~~~~~iDt~~la~~~~p~~~~~~L~~l~~~l-~i~  144 (928)
T PRK08074         80 ELL--------------EGAYFVAHNVHFDLNFLNEELERAGYTEIHCPKLDTVELARILLPTAESYKLRDLSEEL-GLE  144 (928)
T ss_pred             HHh--------------CCCeEEEEChHHHHHHHHHHHHHcCCCCCCCCeeeHHHHHHHhcCCCCCCCHHHHHHhC-CCC
Confidence            999              8899999999999999982     22  3367899999999999988899999999998 888


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          283 IQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       283 ~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                       ..++|+|++||.+|++||.++..+...
T Consensus       145 -~~~~H~Al~DA~ata~l~~~l~~~~~~  171 (928)
T PRK08074        145 -HDQPHRADSDAEVTAELFLQLLNKLER  171 (928)
T ss_pred             -CCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence             446999999999999999999988754

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative

Probab=99.92  E-value=2e-25  Score=232.63  Aligned_cols=156  Identities=22%  Similarity=0.338  Sum_probs=137.3

Q ss_pred             ceeeccCcccccc--CCCCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 018586          136 KAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (353)
Q Consensus       136 ~~~~~D~Ettg~~--~~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~  211 (353)
                      +|+++|+||||.+  .++++++ +.|.+  .+|++  .|+.+|+|..+|++.++.+||||+++|+++|+|++|+++|.+|
T Consensus         1 ~~vvvD~ETTG~~~~~~~IIei-g~v~v--~~~~i~~~f~~~v~P~~~i~~~~~~ltGIt~e~l~~ap~~~ev~~~l~~~   77 (850)
T TIGR01407         1 RYAVVDLETTGTQLSFDKIIQI-GIVVV--EDGEIVDTFHTDVNPNEPIPPFIQELTGISDNMLQQAPYFSQVAQEIYDL   77 (850)
T ss_pred             CEEEEEEECCCCCCCCCeEEEE-EEEEE--ECCEEEEEEEEEeCCCCCCChhhhhhcCcCHHHHhCCCCHHHHHHHHHHH
Confidence            3899999999986  3567777 67777  45665  4999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcEEEecccHHHHHHhcC-----cC--CCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCC
Q 018586          212 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-----NY--PDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ  284 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-----~~--~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~  284 (353)
                      +              ++.++||||+.||+.||+.     +.  ...+++||+.+++.+.|...+++|.+|++.| |++. 
T Consensus        78 l--------------~~~~~VahN~~fD~~fL~~~~~~~g~~~~~~~~iDt~~l~~~~~p~~~~~~L~~l~~~~-gi~~-  141 (850)
T TIGR01407        78 L--------------EDGIFVAHNVHFDLNFLAKALKDCGYEPLPKPRIDTVELAQIFFPTEESYQLSELSEAL-GLTH-  141 (850)
T ss_pred             h--------------CCCEEEEeCcHHHHHHHHHHHHHcCCCCCCCCeEeHHHHHHHhcCCCCCCCHHHHHHHC-CCCC-
Confidence            9              8899999999999999982     22  2366899999999998888899999999998 9985 


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          285 SGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       285 ~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      .++|+|++||.+|++||.++..++..
T Consensus       142 ~~~H~Al~DA~ata~l~~~l~~~~~~  167 (850)
T TIGR01407       142 ENPHRADSDAQATAELLLLLFEKMEK  167 (850)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHh
Confidence            45999999999999999999888655

This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.

>PRK05601 DNA polymerase III subunit epsilon; Validated

Probab=99.92  E-value=6.4e-25  Score=201.66  Aligned_cols=158  Identities=18%  Similarity=0.261  Sum_probs=130.9

Q ss_pred             ccCCCceeeccCccccccC--CCCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHH
Q 018586          131 TCRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~  206 (353)
                      .+...+|+++|+||||+++  +.++++ ++|.+. .+|++  .|..||+|..++.+  ..|||||+++|+++|+|.+|++
T Consensus        42 ~~~~~~fVvlDiETTGLdp~~drIIeI-gAV~i~-~~g~ive~f~tLVnP~~~~~p--~~LHGIT~e~La~AP~f~eVl~  117 (377)
T PRK05601         42 AIEAAPFVAVSIQTSGIHPSTSRLITI-DAVTLT-ADGEEVEHFHAVLNPGEDPGP--FHLHGLSAEEFAQGKRFSQILK  117 (377)
T ss_pred             CCCCCCEEEEEEECCCCCCCCCeEEEE-EEEEEE-cCCEEEEEEEEEECcCCCCCC--ccccCCCHHHHhcCCCHHHHHH
Confidence            4566789999999999974  456666 677663 35555  59999999986554  4699999999999999999999


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc---------------------------------CC-CCce
Q 018586          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN---------------------------------YP-DHML  252 (353)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~---------------------------------~~-~~~~  252 (353)
                      +|.+||              ++.+|||||+.||++||...                                 .| ...+
T Consensus       118 el~~fL--------------~g~vLVaHNA~FD~~FL~~e~~r~~~~a~~~n~~~~r~~~~~~~~~rr~~~g~~p~p~~~  183 (377)
T PRK05601        118 PLDRLI--------------DGRTLILHNAPRTWGFIVSEAKRAMNAAARANRNRNRGNRRGGRGRRRQRVGHIPKPVVI  183 (377)
T ss_pred             HHHHHh--------------CCCEEEEECcHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccccCCCCCCCCE
Confidence            999999              89999999999999998731                                 12 2568


Q ss_pred             eecccccCCcccCCCCCcHHHHHHHHhCCcCC---------CCCCChH--HHHHHHHHHHHHHHhc
Q 018586          253 RDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ---------SGVHDPY--EDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       253 ~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~---------~~~H~Al--~Da~~t~~l~~~~~~~  307 (353)
                      +||+.+++.+.+...+|+|..|+++| |++..         ...|+||  +||+.+++||.++.+.
T Consensus       184 iDTL~LARrl~p~l~~~rL~~La~~l-Gi~~p~~~A~~~Ra~~p~~~l~~~Da~ll~~l~~~~~~~  248 (377)
T PRK05601        184 VDTLATARRQGVALDDIRIRGVAHTL-GLDAPAAEASVERAQVPHRQLCREETLLVARLYFALRAS  248 (377)
T ss_pred             EEhHHHHHHHcCCCCCCCHHHHHHHh-CCCCCchhhhhhhhcCChhhhhhHHHHHHHHHHHHhhcc
Confidence            99999999999998999999999998 98851         1268888  6999999999987433

>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair]

Probab=99.91  E-value=2.5e-24  Score=200.21  Aligned_cols=161  Identities=40%  Similarity=0.670  Sum_probs=144.3

Q ss_pred             ccCCCceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCC-CChHHHHHHHH
Q 018586          131 TCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNA-MPLKEVKDKIL  209 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~-~~~~~v~~~~~  209 (353)
                      .....+++++||||+.. ..+ .++ ++|.+||.+++++|+.+|+|..+|.+++|.++|||.++++++ .++.+|..++.
T Consensus       212 v~~~~~i~AlDCEm~~t-e~g-~el-~RVt~VD~~~~vi~D~fVkP~~~VvDy~T~~SGIT~~~~e~~t~tl~dvq~~l~  288 (380)
T KOG2248|consen  212 VSKSPNIFALDCEMVVT-ENG-LEL-TRVTAVDRDGKVILDTFVKPNKPVVDYNTRYSGITEEDLENSTITLEDVQKELL  288 (380)
T ss_pred             CCCCCCeEEEEeeeeee-ccc-eee-EEeeeeeccCcEEeEEeecCCCcccccccccccccHHHHhcCccCHHHHHHHHH
Confidence            35567899999999987 344 666 899999999999999999999999999999999999999866 58999999999


Q ss_pred             HHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCCCCceeecccccCCcccC-CCCCcHHHHHHHHhCCcCCC--C
Q 018586          210 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTN-LVSHSLKYLTRTYLGYDIQS--G  286 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~-~~~~~L~~l~~~~~~~~~~~--~  286 (353)
                      +|+             +.++|||||++++||+.|++.||.  ++||+.++....+. ....+|+.|++.|||..|+.  +
T Consensus       289 ~~~-------------~~~TILVGHSLenDL~aLKl~H~~--ViDTa~lf~~~~g~~~~k~sLk~L~~~~L~~~Iq~~~~  353 (380)
T KOG2248|consen  289 ELI-------------SKNTILVGHSLENDLKALKLDHPS--VIDTAVLFKHPTGPYPFKSSLKNLAKSYLGKLIQEGVG  353 (380)
T ss_pred             hhc-------------CcCcEEEeechhhHHHHHhhhCCc--eeeeeEEEecCCCCccchHHHHHHHHHHHHHHHhccCC
Confidence            998             488999999999999999999998  89999888777664 66788999999999999994  4


Q ss_pred             CCChHHHHHHHHHHHHHHHhchh
Q 018586          287 VHDPYEDCVSVMRLYKRFRRQDH  309 (353)
Q Consensus       287 ~H~Al~Da~~t~~l~~~~~~~~~  309 (353)
                      .|++.+||+++++|+....+...
T Consensus       354 ~HdS~eDA~acm~Lv~~k~~~~~  376 (380)
T KOG2248|consen  354 GHDSVEDALACMKLVKLKIKNSE  376 (380)
T ss_pred             CCccHHHHHHHHHHHHHHHhccc
Confidence            89999999999999998877654

>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

Probab=99.90  E-value=5.6e-24  Score=181.86  Aligned_cols=153  Identities=22%  Similarity=0.265  Sum_probs=125.8

Q ss_pred             eeeccCccccccC-------CCCccceeEEeeecCCCCe--EEeeeccCCC--CccccccccCCCCHhhhcCCCChHHHH
Q 018586          137 AVAMDCEMVGGGS-------NGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVK  205 (353)
Q Consensus       137 ~~~~D~Ettg~~~-------~~~~~il~~v~ivd~~g~~--~~~~lv~P~~--~i~~~~~~~~GIt~e~l~~~~~~~~v~  205 (353)
                      |+++|+||||.+.       ++++++ ++|.+.+..+.+  .|+.+|+|..  .+++.++++||||++++.+++++++|+
T Consensus         1 ~vv~D~Ettg~~~~~~~~~~~~IieI-gav~v~~~~~~~~~~f~~~i~P~~~~~i~~~~~~i~gIt~e~l~~~~~~~~vl   79 (176)
T cd06133           1 YLVIDFEATCWEGNSKPDYPNEIIEI-GAVLVDVKTKEIIDTFSSYVKPVINPKLSDFCTELTGITQEDVDNAPSFPEVL   79 (176)
T ss_pred             CEEEEeeccccCCCCCCCCCcceEEE-EEEEEEcCCCeEEeeeeeeECCCcCCchhHHHHHhcCcCHHHHhcCCCHHHHH
Confidence            6899999999874       567777 666664333323  5999999998  899999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccccCCCCCc--EEEecccHHHHHHhc-------C---cCCCCceeecccccCCcccCCCCCcHHH
Q 018586          206 DKILEILNNGESTGRLMLDDGKAR--LLVGHGLEHDLDSLR-------M---NYPDHMLRDTAKYRPLMKTNLVSHSLKY  273 (353)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~--~lvgh~~~~D~~~l~-------~---~~~~~~~~Dt~~l~~~~~~~~~~~~L~~  273 (353)
                      ++|.+|+              ++.  .+++|+..||..+|.       .   ......++|+..+++...+....++|.+
T Consensus        80 ~~~~~~l--------------~~~~~~~~v~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~L~~  145 (176)
T cd06133          80 KEFLEWL--------------GKNGKYAFVTWGDWDLKDLLQNQCKYKIINLPPFFRQWIDLKKEFAKFYGLKKRTGLSK  145 (176)
T ss_pred             HHHHHHH--------------HhCCCeEEEeecHhhHHHHHHHHHHhcCCCCcccccceEEHHHHHHHHhCCCCCCCHHH
Confidence            9999999              554  455555689988766       1   1123678999999998888778999999


Q ss_pred             HHHHHhCCcCCCCCCChHHHHHHHHHHHHHHH
Q 018586          274 LTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFR  305 (353)
Q Consensus       274 l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~  305 (353)
                      ++++| |++..+..|+|++||++|++||.++.
T Consensus       146 l~~~~-gi~~~~~~H~Al~DA~~~a~l~~~~~  176 (176)
T cd06133         146 ALEYL-GLEFEGRHHRGLDDARNIARILKRLL  176 (176)
T ss_pred             HHHHC-CCCCCCCCcCcHHHHHHHHHHHHHhC
Confidence            99988 99976569999999999999999863

This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional ho

>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type

Probab=99.90  E-value=6.1e-24  Score=223.69  Aligned_cols=159  Identities=22%  Similarity=0.384  Sum_probs=140.3

Q ss_pred             CCCceeeccCcccccc--CCCCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHH
Q 018586          133 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  208 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~  208 (353)
                      ....++++|+||||++  .++++|+ ++|.+.  +|.+  .|+.+|+|..+|++.++++||||+++|++++++++|+++|
T Consensus       188 ~~~~~VVfDiETTGL~~~~d~IIEI-GAVkv~--~g~iid~f~~~V~P~~~I~~~~~~ltGIT~e~L~~ap~~~evl~~f  264 (1213)
T TIGR01405       188 DDATYVVFDIETTGLSPQYDEIIEF-GAVKVK--NGRIIDKFQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLEKF  264 (1213)
T ss_pred             cCCcEEEEEeEecCCCCCCCeEEEE-EEEEEE--CCeEEEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHH
Confidence            4568999999999986  4577777 788874  4555  4999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcC-----cCC--CCceeecccccCCcccCCCCCcHHHHHHHHhCC
Q 018586          209 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-----NYP--DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGY  281 (353)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-----~~~--~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~  281 (353)
                      .+|+              ++.+|||||+.||+.||+.     ..+  ...++||+.+++.+.|...+++|..|++++ |+
T Consensus       265 ~~fl--------------~~~iLVaHNa~FD~~fL~~~~~r~g~~~~~~~~IDTl~lar~l~p~~k~~kL~~Lak~l-gi  329 (1213)
T TIGR01405       265 KEFF--------------KDSILVAHNASFDIGFLNTNFEKVGLEPLENPVIDTLELARALNPEYKSHRLGNICKKL-GV  329 (1213)
T ss_pred             HHHh--------------CCCeEEEEChHHHHHHHHHHHHHcCCCccCCCEeEHHHHHHHHhccCCCCCHHHHHHHc-CC
Confidence            9999              8899999999999999982     222  256899999999998888899999999998 99


Q ss_pred             cCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          282 DIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       282 ~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      ++.. +|+|++||.+|++||..+.++..+
T Consensus       330 ~~~~-~HrAl~DA~aTa~I~~~ll~~l~~  357 (1213)
T TIGR01405       330 DLDD-HHRADYDAEATAKVFKVMVEQLKE  357 (1213)
T ss_pred             CCCC-CcCHHHHHHHHHHHHHHHHHHHHH
Confidence            9654 999999999999999999987654

The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.

>PRK09182 DNA polymerase III subunit epsilon; Validated

Probab=99.88  E-value=1.2e-22  Score=185.55  Aligned_cols=157  Identities=18%  Similarity=0.236  Sum_probs=121.1

Q ss_pred             ccCCCceeeccCccccccC--CCCccceeEEeeec-CCCCe-----EEeeeccCCCCccccccccCCCCHhhhcCCCChH
Q 018586          131 TCRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVD-EDENV-----IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLK  202 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd-~~g~~-----~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~  202 (353)
                      ......++++|+||||+++  +.++|+ +.|.+.. .+|.+     .|+.+++|..+|++.++.|||||++||++++...
T Consensus        33 ~~~~~~~vvlD~ETTGLd~~~d~IIEI-g~V~v~~~~~g~i~~v~~~~~~lv~P~~~I~~~~t~IhGIt~e~v~~~~~~~  111 (294)
T PRK09182         33 GEFVRLGVILDTETTGLDPRKDEIIEI-GMVAFEYDDDGRIGDVLDTFGGLQQPSRPIPPEITRLTGITDEMVAGQTIDP  111 (294)
T ss_pred             CCCCCeEEEEEeeCCCCCCCCCeEEEE-EEEEEEecCCCceeeeeeEEEEEeCCCCCCCHHHHHhcCCCHHHHhcCCCcH
Confidence            3455678999999999974  567777 6777742 24543     4899999999999999999999999999988654


Q ss_pred             HHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc---CCCCceeecccccCCcccCCCCCcHHHHHHHHh
Q 018586          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN---YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYL  279 (353)
Q Consensus       203 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~---~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~  279 (353)
                      +   .|.+|+.             ...+|||||+.||+.||+..   ++...+.+++....+..+...+++|.+|+..| 
T Consensus       112 ~---~l~~fl~-------------~~~vlVAHNA~FD~~fL~~~~~~~~~~~~~ct~~~i~~~~~~~~~~kL~~La~~~-  174 (294)
T PRK09182        112 A---AVDALIA-------------PADLIIAHNAGFDRPFLERFSPVFATKPWACSVSEIDWSARGFEGTKLGYLAGQA-  174 (294)
T ss_pred             H---HHHHHhc-------------CCCEEEEeCHHHHHHHHHHHHHhccCCcccccHHHHhhccccCCCCCHHHHHHHc-
Confidence            3   4667771             23699999999999999833   22344567765444444455789999999999 


Q ss_pred             CCcCCCCCCChHHHHHHHHHHHHHHHhc
Q 018586          280 GYDIQSGVHDPYEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       280 ~~~~~~~~H~Al~Da~~t~~l~~~~~~~  307 (353)
                      |.  ...+|+|+.||.+|++||..+...
T Consensus       175 g~--~~~aHrAl~Da~Ata~ll~~~l~~  200 (294)
T PRK09182        175 GF--FHEGHRAVDDCQALLELLARPLPE  200 (294)
T ss_pred             CC--CCCCcChHHHHHHHHHHHHHHHhh
Confidence            73  456999999999999999987643

>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]

Probab=99.88  E-value=1.5e-22  Score=182.09  Aligned_cols=157  Identities=25%  Similarity=0.372  Sum_probs=136.0

Q ss_pred             CceeeccCcccccc--CCCCccceeEEeeecCCCC-eEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 018586          135 PKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (353)
Q Consensus       135 ~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~~g~-~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~  211 (353)
                      .+++++|+||||.+  .++++++ ++|.+.+..-. ..|+.+|+|..+|++.+.++||||.++|.++|.|.+|++++.+|
T Consensus        13 ~~~vv~D~ETtg~~~~~~~iieI-gav~~~~~~i~~~~~~~~v~P~~~i~~~~~~i~git~e~l~~~p~~~~v~~~~~~~   91 (243)
T COG0847          13 TRFVVIDLETTGLNPKKDRIIEI-GAVTLEDGRIVERSFHTLVNPERPIPPEIFKIHGITDEMLADAPKFAEVLPEFLDF   91 (243)
T ss_pred             CcEEEEecccCCCCCCCCceEEE-EeEEEECCeeecceeEEEECCCCCCChhhhhhcCCCHHHHhcCCCHHHHHHHHHHH
Confidence            67999999999986  6778888 88888544222 23899999988999999999999999999999999999999999


Q ss_pred             HhcCCCCcccccCCCCC-cEEEecccHHHHHHhc-------CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcC
Q 018586          212 LNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDI  283 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~-~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~  283 (353)
                      +              ++ .++||||+.||+.||+       ...+...++||..+.+..+++...++|+.|+.++ |++.
T Consensus        92 i--------------~~~~~~Vahna~fD~~fl~~~~~~~~~~~~~~~~~~t~~~~r~~~~~~~~~~L~~l~~~~-gi~~  156 (243)
T COG0847          92 I--------------GGLRLLVAHNAAFDVGFLRVESERLGIEIPGDPVLDTLALARRHFPGFDRSSLDALAERL-GIDR  156 (243)
T ss_pred             H--------------CCCCeEEEEchhhcHHHHHHHHHHcCCCcccCceehHHHHHHHHcCCCccchHHHHHHHc-CCCc
Confidence            9              66 9999999999999998       2223456789999999999988899999999988 8884


Q ss_pred             CC-CCCChHHHHHHHHHHHHHHHhc
Q 018586          284 QS-GVHDPYEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       284 ~~-~~H~Al~Da~~t~~l~~~~~~~  307 (353)
                      .. ..|+|+.||.+++++|..+...
T Consensus       157 ~~~~~H~Al~Da~~~a~~~~~~~~~  181 (243)
T COG0847         157 NPFHPHRALFDALALAELFLLLQTG  181 (243)
T ss_pred             CCcCCcchHHHHHHHHHHHHHHHhc
Confidence            32 2799999999999999999985

>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins

Probab=99.88  E-value=6e-23  Score=176.43  Aligned_cols=148  Identities=22%  Similarity=0.249  Sum_probs=114.6

Q ss_pred             eeccCcccccc--CCCCccceeEEeeecCCCCe--EEeeeccCCC--CccccccccCCCCHhhhcC-CCChHHHHHHHHH
Q 018586          138 VAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKN-AMPLKEVKDKILE  210 (353)
Q Consensus       138 ~~~D~Ettg~~--~~~~~~il~~v~ivd~~g~~--~~~~lv~P~~--~i~~~~~~~~GIt~e~l~~-~~~~~~v~~~~~~  210 (353)
                      +++|+||||++  .++++|+ +.|.+ +.++.+  .|+.+|+|..  ++++.+..+||||+++|++ ++++.+++++|.+
T Consensus         1 ~~~D~ETTGl~~~~d~Iiei-g~v~v-~~~~~~~~~~~~~v~p~~~~~~~~~a~~ihGIt~e~l~~~~~~~~~~l~~~~~   78 (183)
T cd06138           1 LFYDYETFGLNPSFDQILQF-AAIRT-DENFNEIEPFNIFCRLPPDVLPSPEALIVTGITPQQLLKEGLSEYEFIAKIHR   78 (183)
T ss_pred             CEEEeecCCCCCCCCceEEE-EEEEE-CCCCCCccceeEEEeCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHHHHHHHH
Confidence            47999999987  3467777 56655 344344  4899999874  5777899999999999999 8999999999999


Q ss_pred             HHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhcCc-----CC--------CCceeecccccCCcc---c---------
Q 018586          211 ILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMN-----YP--------DHMLRDTAKYRPLMK---T---------  264 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~~~-----~~--------~~~~~Dt~~l~~~~~---~---------  264 (353)
                      |+            +..+.++|||| +.||+.||+..     .+        ....+||..+++...   |         
T Consensus        79 ~~------------~~~~~~lVahn~~~FD~~fL~~~~~r~~~~~~~~~~~~~~~~~dtl~l~r~~~~~~~~~~~~~~~~  146 (183)
T cd06138          79 LF------------NTPGTCIVGYNNIRFDDEFLRFAFYRNLYDPYTWEWKNGNSRWDLLDVVRAYYALRPDGIVWPKND  146 (183)
T ss_pred             HH------------ccCCCcEEeeCchhhHHHHHHHHHHHCCCcccceeccCCccccccHHHHHHHHhhChhhccCcccc
Confidence            99            22457899997 89999999821     11        123478887665432   2         


Q ss_pred             -CCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHH
Q 018586          265 -NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLY  301 (353)
Q Consensus       265 -~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~  301 (353)
                       ...+++|++|+++| |++. .++|+|++||.+|++|.
T Consensus       147 ~~~~~~~L~~l~~~~-gi~~-~~~H~Al~Da~~ta~l~  182 (183)
T cd06138         147 DGKPSFKLEDLAQAN-GIEH-SNAHDALSDVEATIALA  182 (183)
T ss_pred             CCCcchhHHHHHHHC-CCCc-cccccHHHHHHHHHHHh
Confidence             23578999999998 9984 56999999999999986

This subfamily is composed of the N-terminal domain of Escherichia coli exonuclease I (ExoI) and similar proteins. ExoI is a monomeric enzyme that hydrolyzes single stranded DNA in the 3' to 5' direction. It plays a role in DNA recombination and repair. It primarily functions in repairing frameshift mutations. The N-terminal domain of ExoI is a DEDDh-type DnaQ-like 3'-5 exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The ExoI structure is unique among DnaQ family enzymes in that there is a large distance between the two metal ions required for catalysis and the catalytic histidine is oriented away from the active site.

>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family

Probab=99.88  E-value=2.2e-22  Score=168.28  Aligned_cols=147  Identities=28%  Similarity=0.409  Sum_probs=124.3

Q ss_pred             eeccCcccccc--CCCCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHh
Q 018586          138 VAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (353)
Q Consensus       138 ~~~D~Ettg~~--~~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~  213 (353)
                      +++|+||||.+  .++++|+ +.+.+ +.++++  .++.+|+|...+++..+.+|||+++++++++++.+++.+|.+++ 
T Consensus         1 v~~D~Ettg~~~~~~~iiei-~~v~~-~~~~~~~~~~~~~i~p~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~l-   77 (159)
T cd06127           1 VVFDTETTGLDPKKDRIIEI-GAVKV-DGGIEIVERFETLVNPGRPIPPEATAIHGITDEMLADAPPFEEVLPEFLEFL-   77 (159)
T ss_pred             CeEEeeCCCcCCCCCeEEEE-EEEEE-ECCcChhhhhheeeCcCCcCCHhheeccCCCHHHHhcCCCHHHHHHHHHHHH-
Confidence            57999999987  4566676 55555 333333  58999999999999999999999999999999999999999999 


Q ss_pred             cCCCCcccccCCCCCcEEEecccHHHHHHhcCc-------CCCCceeecccccCCcccCCCCCcHHHH-HHHHhCCcCCC
Q 018586          214 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YPDHMLRDTAKYRPLMKTNLVSHSLKYL-TRTYLGYDIQS  285 (353)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-------~~~~~~~Dt~~l~~~~~~~~~~~~L~~l-~~~~~~~~~~~  285 (353)
                                   ++.++||||+.||+.+|+..       .+...++||+.+++.+.+....++|..+ ++.+ |++ ..
T Consensus        78 -------------~~~~~v~~n~~fD~~~l~~~~~~~~~~~~~~~~iDt~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~~  142 (159)
T cd06127          78 -------------GGRVLVAHNASFDLRFLNRELRRLGGPPLPNPWIDTLRLARRLLPGLRSHRLGLLLAERY-GIP-LE  142 (159)
T ss_pred             -------------CCCEEEEeCcHhhHHHHHHHHHHhCCCCCCCCeeEHHHHHHHHcCCCCcCchHHHHHHHc-CCC-CC
Confidence                         66899999999999999822       3347789999999999888888999998 6655 887 45


Q ss_pred             CCCChHHHHHHHHHHHH
Q 018586          286 GVHDPYEDCVSVMRLYK  302 (353)
Q Consensus       286 ~~H~Al~Da~~t~~l~~  302 (353)
                      .+|+|++||++|++||.
T Consensus       143 ~~H~Al~Da~~t~~l~~  159 (159)
T cd06127         143 GAHRALADALATAELLL  159 (159)
T ss_pred             CCCCcHHHHHHHHHHhC
Confidence            69999999999999983

DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.

>PTZ00315 2'-phosphotransferase; Provisional

Probab=99.87  E-value=8.9e-22  Score=190.82  Aligned_cols=174  Identities=18%  Similarity=0.176  Sum_probs=134.0

Q ss_pred             ccCCCceeeccCcccccc-----CCCCccceeEEeeecCCCCe--EEeeeccCCC--CccccccccCCCCHhhhcCCCCh
Q 018586          131 TCRGPKAVAMDCEMVGGG-----SNGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPL  201 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~-----~~~~~~il~~v~ivd~~g~~--~~~~lv~P~~--~i~~~~~~~~GIt~e~l~~~~~~  201 (353)
                      ...-..|+++|+||||.+     .++++|+ ++|.+-..+|++  .|+.||+|..  +++++++.+||||++||++||+|
T Consensus        52 ~q~~d~~IV~DlETTgl~~~~~~~dEIIEI-GaV~Vd~~ng~Ii~~F~~yVkP~~~p~Ls~fct~LTGITqe~V~~Ap~F  130 (582)
T PTZ00315         52 PQPFDAYVVLDFEATCEADRRIEDAEVIEF-PMVLVDARTATPVAEFQRYVRPVKNPVLSRFCTELTGITQSMVSRADPF  130 (582)
T ss_pred             cCCCCeEEEEEEecCCCCCCCCCCCceEEE-EEEEEEccCCEEEEEEEEEECCCCCCCCChhHhhhcCcCHHHHhcCCCH
Confidence            344578999999999975     2567777 677763346766  4899999986  69999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHH-Hhc--------CcCC--CCceeecc-cccCCccc-----
Q 018586          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLR--------MNYP--DHMLRDTA-KYRPLMKT-----  264 (353)
Q Consensus       202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~-~l~--------~~~~--~~~~~Dt~-~l~~~~~~-----  264 (353)
                      .+|+.+|.+|+.+..    +...+..+..+|+||..||+. ||.        ...|  ...++|+. .+++.+++     
T Consensus       131 ~eVl~ef~~fL~~~~----~~e~~~~~~~~vah~g~fDl~~fL~~e~~~~~~~g~p~~f~~widLk~~lar~l~p~~~~~  206 (582)
T PTZ00315        131 PVVYCEALQFLAEAG----LGDAPPLRSYCVVTCGDWDLKTMLPSQMRVSGQQGTPLSFQRWCNLKKYMSQLGFGNGSGC  206 (582)
T ss_pred             HHHHHHHHHHHhccc----cccccccCceEEEeccHHHHHHHHHHHHHHhhhcCCCcccceEEEhHHHHHHHhCcccccc
Confidence            999999999994321    111112345799999999995 774        1333  24456653 45555444     


Q ss_pred             ------CCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          265 ------NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       265 ------~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                            ....++|.++++.+ |+++.+.+|+|++||++|++||.++++++..
T Consensus       207 ~~~~~~~~~~~~L~~al~~l-gL~~eGr~HrAlDDA~ntA~L~~~Ll~~g~~  257 (582)
T PTZ00315        207 GGGATPPLGPSDMPDMLQML-GLPLQGRHHSGIDDCRNIAAVLCELLRRGLV  257 (582)
T ss_pred             ccccccccCCcCHHHHHHHC-CCCCCCCCcCcHHHHHHHHHHHHHHHHcCCE
Confidence                  34678999999988 9998777999999999999999999999775

>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III

Probab=99.87  E-value=2.8e-24  Score=180.40  Aligned_cols=149  Identities=27%  Similarity=0.457  Sum_probs=125.5

Q ss_pred             eeccCccccccC--CCCccceeEEeeecCC--CCeEEeeeccCCCC--ccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 018586          138 VAMDCEMVGGGS--NGTLDLCARVCLVDED--ENVIFHTYVQPQLP--VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (353)
Q Consensus       138 ~~~D~Ettg~~~--~~~~~il~~v~ivd~~--g~~~~~~lv~P~~~--i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~  211 (353)
                      |++|+||||.+.  +.++|+ ++|.+.+..  ....++.+|+|..+  +++.++.+||||+++|.+++++.+++.++.+|
T Consensus         1 v~~D~Ettg~~~~~~~iiei-g~v~~~~~~~~~~~~~~~~i~p~~~~~i~~~~~~~~gIt~~~l~~~~~~~~~~~~~~~~   79 (164)
T PF00929_consen    1 VVFDTETTGLDPRQDEIIEI-GAVKVDDDENEEVESFNSLIRPEEPPKISPWATKVHGITQEDLEDAPSFEEALDEFEEF   79 (164)
T ss_dssp             EEEEEEESSSTTTTCTEEEE-EEEEEETTTTEEEEEEEEEBEHSSHCSSEHHHHHHHHHCHHHHHCHCEHHHHHHHHHHH
T ss_pred             cEEEeEcCCCCCCCCeEEEE-EEEEeeCCccccceeeeecccccccccCCHHHeeecCCcccccccCCcHHHHHHhhhhh
Confidence            589999999875  677777 788886665  34479999999987  99999999999999999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcEEEecccHHHHHHhc--------CcCC-CCceeecccccCCcccCCCCCcHHHHHHHHhCCc
Q 018586          212 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR--------MNYP-DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~--------~~~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  282 (353)
                      +.             ++.++||||+.||..++.        ..+| ...++|+..+.+...+....++|+.|++.| |++
T Consensus        80 ~~-------------~~~~~v~~n~~fd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~  145 (164)
T PF00929_consen   80 LK-------------KNDILVGHNASFDIGFLRREDKRFLGKPIPKPNPFIDTLELARALFPNRKKYSLDDLAEYF-GIP  145 (164)
T ss_dssp             HH-------------HHTEEEETTCCHEEESSHHHHHHHHHHHHHHHHHECEEEEEHHHHHHHHHHHSHHHHHHHT-TSS
T ss_pred             hh-------------cccccccccccchhhHHHHhhhhcccccccccchhhhhhHHHHHHhhccccCCHHHHHHHc-CCC
Confidence            92             267999999889887776        2233 245789999888877766668999999999 888


Q ss_pred             CCCCCCChHHHHHHHHHHH
Q 018586          283 IQSGVHDPYEDCVSVMRLY  301 (353)
Q Consensus       283 ~~~~~H~Al~Da~~t~~l~  301 (353)
                      ....+|+|++||++|++||
T Consensus       146 ~~~~~H~Al~Da~~t~~l~  164 (164)
T PF00929_consen  146 FDGTAHDALDDARATAELF  164 (164)
T ss_dssp             STSTTTSHHHHHHHHHHHH
T ss_pred             CCCCCcChHHHHHHHhCcC
Confidence            5554799999999999997

Ribonuclease T is responsible for the end-turnover of tRNA,and removes the terminal AMP residue from uncharged tRNA. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria, and also exhibits 3' to 5' exonuclease activity.; PDB: 3CM6_A 3CM5_A 3CG7_A 1ZBU_B 1ZBH_A 1W0H_A 3NGY_C 2IS3_B 3NH1_C 3NH2_F ....

>PRK11779 sbcB exonuclease I; Provisional

Probab=99.84  E-value=5.4e-21  Score=184.41  Aligned_cols=167  Identities=18%  Similarity=0.250  Sum_probs=125.7

Q ss_pred             CCCceeeccCccccccC--CCCccceeEEeeecCCCCe---EEeeeccCCCC--ccccccccCCCCHhhhcC-CCChHHH
Q 018586          133 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV---IFHTYVQPQLP--VTNYRYEVTGLTEEDIKN-AMPLKEV  204 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~---~~~~lv~P~~~--i~~~~~~~~GIt~e~l~~-~~~~~~v  204 (353)
                      ....|+++|+||||+++  ++++++ |+|.+. .++.+   .++.+|+|...  +++.++.|||||+++|.+ +.+..++
T Consensus         4 ~~~~fvv~D~ETTGLdP~~DrIIei-AaVrvd-~~~~~i~e~~~~~~~P~~~~lp~p~a~~IhGIT~e~l~~~g~~e~e~   81 (476)
T PRK11779          4 MQPTFLWHDYETFGANPALDRPAQF-AGIRTD-ADLNIIGEPLVFYCKPADDYLPSPEAVLITGITPQEALEKGLPEAEF   81 (476)
T ss_pred             CCCcEEEEEEECCCCCCCCCeeEEE-EEEEEe-CCCceecceeEEEEcCCcCcCCCHHHHHHhCCCHHHHHhcCCCHHHH
Confidence            35569999999999974  667777 677663 33333   48999999853  456789999999999965 4579999


Q ss_pred             HHHHHHHHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhcCcCC----------------CCceeecccccCCcc----
Q 018586          205 KDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMNYP----------------DHMLRDTAKYRPLMK----  263 (353)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~~~~~----------------~~~~~Dt~~l~~~~~----  263 (353)
                      +.+|.+++.            ..++++|||| +.||..||+..+.                ...++|++.+...+.    
T Consensus        82 ~~~i~~~l~------------~~~~~lVGhNni~FD~eflr~~~~r~~~d~y~~~~~~~n~r~D~LDl~rl~~~lrp~~i  149 (476)
T PRK11779         82 AARIHAEFS------------QPGTCILGYNNIRFDDEVTRYIFYRNFYDPYAREWQNGNSRWDLLDVVRACYALRPEGI  149 (476)
T ss_pred             HHHHHHHHh------------cCCCEEEEeCchhhcHHHHHHHHHhccchHHHHHhcCCCCccCHHHHHHHHHHhccccc
Confidence            999999992            1368999997 7899999883210                122345555443322    


Q ss_pred             --c----CCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhhhhhhc
Q 018586          264 --T----NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIG  315 (353)
Q Consensus       264 --~----~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~~~~~~  315 (353)
                        |    +..+++|..|+..+ |++ ..++|+|++||.+|++|++.+.++-.+++++.
T Consensus       150 ~~P~~~~g~~s~rLe~L~~~~-gI~-~~~AHdALsDa~aT~~la~~l~~~qP~l~~~~  205 (476)
T PRK11779        150 NWPENEDGLPSFKLEHLTKAN-GIE-HENAHDAMSDVYATIAMAKLIKQKQPKLFDYL  205 (476)
T ss_pred             cCcccccCCCCCcHHHHHHHc-CCC-CCCCCCcHHHHHHHHHHHHHHHHhChHHHHHH
Confidence              2    23679999999999 988 45699999999999999999998866665554

>PRK00448 polC DNA polymerase III PolC; Validated

Probab=99.84  E-value=5e-21  Score=204.09  Aligned_cols=159  Identities=21%  Similarity=0.391  Sum_probs=139.3

Q ss_pred             CCCceeeccCcccccc--CCCCccceeEEeeecCCCCe--EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHH
Q 018586          133 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  208 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~  208 (353)
                      ...+++++|+||||++  .+.++++ +++.+  .+|.+  .|+.+|+|..++++.++.+||||+++|.+++++.+|+++|
T Consensus       417 ~~~~~VVfDLETTGL~~~~deIIEI-gAV~V--~~G~iie~F~~~V~P~~~I~~~~~~LTGIT~e~L~~aps~~EaL~~f  493 (1437)
T PRK00448        417 KDATYVVFDVETTGLSAVYDEIIEI-GAVKI--KNGEIIDKFEFFIKPGHPLSAFTTELTGITDDMVKDAPSIEEVLPKF  493 (1437)
T ss_pred             ccCcEEEEEhhhcCCCCchhhhhee-eeEEE--eCCeEeeeEEEEECCCCCCCHHHHHHhCCCHHHHcCCCCHHHHHHHH
Confidence            3457999999999986  4567777 67777  45666  4899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-----Cc--CCCCceeecccccCCcccCCCCCcHHHHHHHHhCC
Q 018586          209 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-----MN--YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGY  281 (353)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-----~~--~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~  281 (353)
                      .+|+              ++.+|||||+.||+.||+     +.  .+...++||+.+++.+.+...+++|..|++.| |+
T Consensus       494 ~~fi--------------gg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~~~IDTLelar~l~p~~k~~kL~~LAk~l-GL  558 (1437)
T PRK00448        494 KEFC--------------GDSILVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLELSRFLYPELKSHRLNTLAKKF-GV  558 (1437)
T ss_pred             HHHh--------------CCCEEEEeCccccHHHHHHHHHHcCCccccccceeHHHHHHHHcCccccccHHHHHHHc-CC
Confidence            9999              889999999999999986     22  23467899999999988888899999999998 99


Q ss_pred             cCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          282 DIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       282 ~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      ... ++|||++||.+|++||.++.++..+
T Consensus       559 ~~~-~~HrAl~DA~aTa~lf~~ll~~l~~  586 (1437)
T PRK00448        559 ELE-HHHRADYDAEATAYLLIKFLKDLKE  586 (1437)
T ss_pred             CCC-CCcChHHHHHHHHHHHHHHHHHHHH
Confidence            954 5899999999999999999988754

>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins

Probab=99.83  E-value=4.2e-21  Score=163.39  Aligned_cols=151  Identities=17%  Similarity=0.172  Sum_probs=110.7

Q ss_pred             eeeccCccccccC--CCCccceeEEeeecCCCCe--EEeeeccCCCCcc----cccccc---CCCCHhhhcCCCChHHHH
Q 018586          137 AVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVT----NYRYEV---TGLTEEDIKNAMPLKEVK  205 (353)
Q Consensus       137 ~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~----~~~~~~---~GIt~e~l~~~~~~~~v~  205 (353)
                      ++++|+||||+++  +.++|+ |+|.+.+..+.+  .|+.+|+|..+++    +++..+   ||||+++++++|++.+|+
T Consensus         1 lv~iD~ETTGl~p~~d~IieI-gaV~~~~~~~~i~~~f~~~i~p~~~~~~~~~~~~~~ih~~tgIt~~~l~~~~~~~~vl   79 (173)
T cd06135           1 LVWIDLEMTGLDPEKDRILEI-ACIITDGDLNIIAEGPELVIHQPDEVLDGMDEWCTEMHTKSGLTERVRASTVTLAQAE   79 (173)
T ss_pred             CEEEEEecCCCCCCCCeeEEE-EEEEEeCCCceecCceeEEECCCHHHhhhccHHHHHcccccccHHHHHhCCCCHHHHH
Confidence            4789999999974  567777 777653222333  4899999997655    344555   599999999999999999


Q ss_pred             HHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc-----CCC-Cceeec---ccccCCcccCCCCCcHHHHHH
Q 018586          206 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-----YPD-HMLRDT---AKYRPLMKTNLVSHSLKYLTR  276 (353)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-----~~~-~~~~Dt---~~l~~~~~~~~~~~~L~~l~~  276 (353)
                      .+|.+|+.+.-        .....+|||||+.||+.||+..     .+. .+.+|+   ..+++.+.|...+        
T Consensus        80 ~~~~~f~~~~~--------~~~~~~lvgh~~~FD~~fL~~~~~~~~~~~~~~~~D~~~l~~l~~~l~p~~~~--------  143 (173)
T cd06135          80 AELLEFIKKYV--------PKGKSPLAGNSVHQDRRFLDKYMPELEEYLHYRILDVSSIKELARRWYPEIYR--------  143 (173)
T ss_pred             HHHHHHHHHhc--------CCCCCceeecchhhCHHHHHHHHHHHhccCCcchhhHHHHHHHHHHhCcHhhh--------
Confidence            99999993210        0134699999999999999832     221 446787   4466665554322        


Q ss_pred             HHhCCcCCCCCCChHHHHHHHHHHHHHHHhc
Q 018586          277 TYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       277 ~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~  307 (353)
                       + ++. ....|||++||.+|+.+|+.+++.
T Consensus       144 -~-~~~-~~~~HrAl~Da~~~~~~~~~~~~~  171 (173)
T cd06135         144 -K-APK-KKGTHRALDDIRESIAELKYYREN  171 (173)
T ss_pred             -c-CCC-CCCCcchHHHHHHHHHHHHHHHHH
Confidence             2 555 455899999999999999998864

Oligoribonuclease (Orn) is a DEDDh-type DnaQ-like 3'-5' exoribonuclease that is responsible for degrading small oligoribonucleotides to mononucleotides. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Orn is essential for Escherichia coli survival. The human homolog, also called Sfn (small fragment nuclease), is able to hydrolyze short single-stranded RNA and DNA oligomers. It plays a role in cellular nucleotide recycling.

>PRK05359 oligoribonuclease; Provisional

Probab=99.83  E-value=1.6e-20  Score=160.39  Aligned_cols=154  Identities=18%  Similarity=0.219  Sum_probs=116.1

Q ss_pred             CCceeeccCcccccc--CCCCccceeEEeeecCCCCeE---EeeeccCCCC----ccccccccC---CCCHhhhcCCCCh
Q 018586          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI---FHTYVQPQLP----VTNYRYEVT---GLTEEDIKNAMPL  201 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~~g~~~---~~~lv~P~~~----i~~~~~~~~---GIt~e~l~~~~~~  201 (353)
                      ..+|+++|+||||++  .++++|+ |+|.+ +.+..++   +..+|+|...    +++.++.+|   |||++++++++++
T Consensus         2 ~~~~vvlD~ETTGLdp~~d~IieI-gaV~~-~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~ih~~tGIt~~~l~~~~~~   79 (181)
T PRK05359          2 EDNLIWIDLEMTGLDPERDRIIEI-ATIVT-DADLNILAEGPVIAIHQSDEALAAMDEWNTRTHTRSGLIDRVRASTVSE   79 (181)
T ss_pred             CCcEEEEEeecCCCCCCCCeEEEE-EEEEE-cCCceEcccceEEEECCCHHHhhccChHHHHhcccccCcHHHHhcCCCH
Confidence            356999999999987  4567777 66644 4444443   8899999865    466777777   8999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcC-----C-CCceee--cc-cccCCcccCCCCCcHH
Q 018586          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY-----P-DHMLRD--TA-KYRPLMKTNLVSHSLK  272 (353)
Q Consensus       202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~-----~-~~~~~D--t~-~l~~~~~~~~~~~~L~  272 (353)
                      .+|+.+|.+|+...-        ..++.+|||||+.||+.||+...     + .++++|  |. .+++.++|..      
T Consensus        80 ~e~~~~~l~fl~~~~--------~~~~~~l~g~~v~FD~~FL~~~~~~~~~~l~~~~~Dv~tl~~l~r~~~P~~------  145 (181)
T PRK05359         80 AEAEAQTLEFLKQWV--------PAGKSPLCGNSIGQDRRFLARYMPELEAYFHYRNLDVSTLKELARRWKPEI------  145 (181)
T ss_pred             HHHHHHHHHHHHHhc--------CCCCCceeecchhhCHHHHHHHHHHhcccCCCcccchhHHHHHHHHhChhh------
Confidence            999999999993210        02467899999999999999332     1 255677  44 5677666642      


Q ss_pred             HHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchh
Q 018586          273 YLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH  309 (353)
Q Consensus       273 ~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~  309 (353)
                           +.+++ ..+.|||++||+++.++|+.+++...
T Consensus       146 -----~~~~~-~~~~HRal~D~~~s~~~~~~~~~~~~  176 (181)
T PRK05359        146 -----LNGFK-KQGTHRALADIRESIAELKYYREHFF  176 (181)
T ss_pred             -----hhCCC-CcCCcccHHHHHHHHHHHHHHHHHhc
Confidence                 22666 55689999999999999999988753

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.74  E-value=1.3e-18  Score=151.62  Aligned_cols=119  Identities=21%  Similarity=0.324  Sum_probs=104.7

Q ss_pred             CCCceeeccccccccChHHHHHHHhhhcCCCCCC--ccccCcccCCChHHHHhcc---CCCCCCCCCCcccccc------
Q 018586           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP--KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDR------   79 (353)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~--~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~------   79 (353)
                      ..-.|.|+.||+.+...++|.+|+.+|.-..++.  .|..|++.+.+-..|..|+   +-+..|.+|||.|+++      
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGH  206 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGH  206 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcc
Confidence            4567999999999999999999999922223333  9999999999999999999   3377899999999976      


Q ss_pred             ----------ccccccccccCchhHHHHHHHhcCCCCCCcccCCcchhhhhhhccccccc
Q 018586           80 ----------GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEK  129 (353)
Q Consensus        80 ----------~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~~~~~~~e~  129 (353)
                                +|+.|+|+|.++|+|+.|+++|++.|+|+|+.|+-++...+++.++.+..
T Consensus       207 iRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~  266 (279)
T KOG2462|consen  207 IRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESA  266 (279)
T ss_pred             cccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence                      39999999999999999999999999999999999999998888777654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.62  E-value=8e-16  Score=151.92  Aligned_cols=165  Identities=26%  Similarity=0.418  Sum_probs=138.8

Q ss_pred             ccCCCceeeccCcccccc-------CCCCcc-------ceeEEeeecCCCC----eEEeeeccCCCCccccccccCCCCH
Q 018586          131 TCRGPKAVAMDCEMVGGG-------SNGTLD-------LCARVCLVDEDEN----VIFHTYVQPQLPVTNYRYEVTGLTE  192 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~-------~~~~~~-------il~~v~ivd~~g~----~~~~~lv~P~~~i~~~~~~~~GIt~  192 (353)
                      .+.....|++|.|++.++       .|+..+       .+||+++|+.+|.    +..|-||.....|.++.|++.||.+
T Consensus       906 mPk~g~LVgiDAEFVtLq~Ee~Eir~DG~~stIkP~~msvARiScvRGeGp~eGiPFiDDYv~T~d~VvDYLTqySGI~P  985 (1118)
T KOG1275|consen  906 MPKSGDLVGIDAEFVTLQTEELEIRSDGKTSTIKPSRMSVARISCVRGEGPNEGIPFIDDYVSTDDKVVDYLTQYSGIKP  985 (1118)
T ss_pred             cCCCCceeeeehhheecchHHhccccCCceeEeccccceeEEEEEEcccCCCCCCccccceecchhHHHHHHHHhcCCCc
Confidence            566778899999998754       233221       1489999987643    3569999999999999999999999


Q ss_pred             hhhcCC------CChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCCCCceeecccccCCcccCC
Q 018586          193 EDIKNA------MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNL  266 (353)
Q Consensus       193 e~l~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~  266 (353)
                      .||.-.      -+++.+..++.=++             +.|.+.|||++.+|+.++++.+|..+++||+.|+..-  ..
T Consensus       986 GDLDp~~S~K~Lt~lK~~Y~Kl~~Li-------------~~GviFVGHGL~nDFrvINi~Vp~~QiiDTv~lf~~~--s~ 1050 (1118)
T KOG1275|consen  986 GDLDPTTSEKRLTTLKVLYLKLRLLI-------------QRGVIFVGHGLQNDFRVINIHVPEEQIIDTVTLFRLG--SQ 1050 (1118)
T ss_pred             cccCCccCcceehhHHHHHHHHHHHH-------------HcCcEEEcccccccceEEEEecChhhheeeeEEEecc--cc
Confidence            999743      25777888887777             4889999999999999999999999999999998664  46


Q ss_pred             CCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          267 VSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       267 ~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      +..+|+.||..+||..||.++|++++||+.++.||+++++--++
T Consensus      1051 R~LSLrfLa~~lLg~~IQ~~~HDSIeDA~taLkLYk~Yl~lkeq 1094 (1118)
T KOG1275|consen 1051 RMLSLRFLAWELLGETIQMEAHDSIEDARTALKLYKKYLKLKEQ 1094 (1118)
T ss_pred             cEEEHHHHHHHHhcchhhccccccHHHHHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999999999876544

>COG5018 KapD Inhibitor of the KinA pathway to sporulation, predicted exonuclease [General function prediction only]

Probab=99.50  E-value=7e-15  Score=118.76  Aligned_cols=164  Identities=20%  Similarity=0.287  Sum_probs=128.4

Q ss_pred             CceeeccCcccccc------CCCCccceeEEeeecC-CCCe--EEeeeccCCC--CccccccccCCCCHhhhcCCCChHH
Q 018586          135 PKAVAMDCEMVGGG------SNGTLDLCARVCLVDE-DENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKE  203 (353)
Q Consensus       135 ~~~~~~D~Ettg~~------~~~~~~il~~v~ivd~-~g~~--~~~~lv~P~~--~i~~~~~~~~GIt~e~l~~~~~~~~  203 (353)
                      ..++++|.|.|...      ...++++  ...+|+. +.++  .|.+||+|..  .++.++..+|||++..|.+||-|+.
T Consensus         4 ~~lLIID~EaT~~eG~~~~~e~eiiei--~a~lv~~id~~vvd~F~syVRP~~~P~Lt~~Ckslt~I~Q~~VD~apifs~   81 (210)
T COG5018           4 NSLLIIDFEATMPEGKYSPQEFEIIEI--EAGLVKSIDDEVVDTFSSYVRPKKFPKLTKRCKSLTKITQKQVDEAPIFSM   81 (210)
T ss_pred             ceEEEEEeeeeccCCCCCchhceeeee--hhhHHHHhhHHHHHHHHHhcCcccCchHHHHHHHhhhhhhhhccccchHHH
Confidence            34789999999532      1223333  2333333 3333  4899999985  5788999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc--------CC-CCceeecccccCCcccCCCCCcHHHH
Q 018586          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN--------YP-DHMLRDTAKYRPLMKTNLVSHSLKYL  274 (353)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~--------~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l  274 (353)
                      |+++|..||+.+++        ..+..++.|+ +.|++.|...        .+ ..+++|....++.++...+-.+|..+
T Consensus        82 v~E~f~r~L~~h~P--------r~~~~wa~wG-~~Dm~~l~q~~~~~~~~p~~~kgp~vdl~~~yk~v~~~pr~tgln~a  152 (210)
T COG5018          82 VFEDFIRKLNEHDP--------RKNSTWATWG-NMDMKVLKQNCMFNHIPPFPFKGPMVDLSLEYKNVFGDPRLTGLNKA  152 (210)
T ss_pred             HHHHHHHHHHhcCc--------ccCCcccccc-chhHHHHHHHHHhcCCCCccccCccchHHHHHHHHhcCCccccHHHH
Confidence            99999999988875        1333577777 7999998811        12 26789999999888888777899999


Q ss_pred             HHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          275 TRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       275 ~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      ++.+ |..+++.+|+||+||+.+++|++.+...-..
T Consensus       153 le~~-G~sf~G~~HraldDArn~~rl~klv~~~~~~  187 (210)
T COG5018         153 LEEY-GDSFTGTHHRALDDARNAYRLFKLVEQDKQY  187 (210)
T ss_pred             HHHh-ccccCCchhhhHHHHHHHHHHHHHHcchhhh
Confidence            9999 9999999999999999999999999877444

>KOG0542 consensus Predicted exonuclease [Replication, recombination and repair]

Probab=99.48  E-value=4.8e-14  Score=121.38  Aligned_cols=170  Identities=17%  Similarity=0.286  Sum_probs=130.1

Q ss_pred             CceeeccCcccccc------CCCCccceeEEeeecC-CCCe--EEeeeccCCC--CccccccccCCCCHhhhcCCCChHH
Q 018586          135 PKAVAMDCEMVGGG------SNGTLDLCARVCLVDE-DENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKE  203 (353)
Q Consensus       135 ~~~~~~D~Ettg~~------~~~~~~il~~v~ivd~-~g~~--~~~~lv~P~~--~i~~~~~~~~GIt~e~l~~~~~~~~  203 (353)
                      .-++++|.|+|--.      ...+||. .+|.+.+. .+.+  .|++||+|..  .++++++.+|||.++.|..||+|.+
T Consensus        56 dYLliiDFEaTC~e~~~~~~~~EIIEf-P~V~l~~~~~~~Ie~eF~qYVrP~~np~LS~fC~~lTgI~Q~tVD~a~~f~~  134 (280)
T KOG0542|consen   56 DYLLILDFEATCEEGNKPHYVQEIIEF-PAVLLDNTETSIIEDEFHQYVRPVENPRLSDFCTSLTGIQQETVDEAPTFPQ  134 (280)
T ss_pred             ceEEEEeeeeeccccCCCCcchheeec-ceeEeeccchhhHHHHHHhhcCcccCchHHHHHHHhhCchHhhhccCCCHHH
Confidence            34689999999532      3456666 45544443 4444  4899999984  6899999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHH-hc-------CcCCC--CceeecccccCCcccCCCCCcHHH
Q 018586          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDS-LR-------MNYPD--HMLRDTAKYRPLMKTNLVSHSLKY  273 (353)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~-l~-------~~~~~--~~~~Dt~~l~~~~~~~~~~~~L~~  273 (353)
                      |+.+|.+|+....-.     ...++--+|..+ .-|+.. |.       +..|.  .++||.-+.++..+..+..-++..
T Consensus       135 vl~~f~~Wlr~~~~~-----~k~~~~Afvtdg-~wDl~~~l~~qck~~~i~~P~~f~qwInirk~yk~~y~~~~~t~it~  208 (280)
T KOG0542|consen  135 VLSEFDSWLRKDSLG-----DKNGKFAFVTDG-DWDLWVFLQYQCKLKNIRIPAFFNQWINIRKIYKNFYNRPAPTNITG  208 (280)
T ss_pred             HHHHHHHHHHHhhcc-----cccCceEEEeCc-hhhHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHhcCccccCHHH
Confidence            999999999544321     001455677766 445543 22       55664  788999988887766656778999


Q ss_pred             HHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhhhh
Q 018586          274 LTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVE  312 (353)
Q Consensus       274 l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~~~  312 (353)
                      +.+++ |+.+.+.+|+++.||+.+++|..+|.+.+.++.
T Consensus       209 mLe~~-gL~f~Gr~HsGiDDa~Nia~I~~kM~~dg~~~~  246 (280)
T KOG0542|consen  209 MLEHY-GLQFEGRAHSGIDDARNIARIAQKMIRDGAEFR  246 (280)
T ss_pred             HHHHh-CCcccCCcccCchhHHHHHHHHHHHHhCCcEEE
Confidence            99999 999999999999999999999999999987643

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.31  E-value=7.2e-13  Score=115.87  Aligned_cols=86  Identities=33%  Similarity=0.571  Sum_probs=60.0

Q ss_pred             CCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc-----CCCCCCCCCCcccccc-----
Q 018586           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDR-----   79 (353)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~c~~Cgk~f~~~-----   79 (353)
                      ..+.+.|+.|+|.|.+-..|+.|+++  |+  -+ +|..||+.|.+.=-|+.|+     +++|.|..|+|.|.+.     
T Consensus       158 s~ka~~C~~C~K~YvSmpALkMHirT--H~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRA  233 (279)
T KOG2462|consen  158 SKKAFSCKYCGKVYVSMPALKMHIRT--HT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRA  233 (279)
T ss_pred             ccccccCCCCCceeeehHHHhhHhhc--cC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHH
Confidence            35566677777777766666667766  55  23 6667777666665555665     3455566777776654     


Q ss_pred             -----------ccccccccccCchhHHHHHHH
Q 018586           80 -----------GCNLCMNIFDSPSSLIKHKEA  100 (353)
Q Consensus        80 -----------~C~~C~k~F~~~s~L~~H~~~  100 (353)
                                 +|..|+|+|...|-|..|...
T Consensus       234 HmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  234 HMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             HHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence                       499999999999999999874

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.14  E-value=1.1e-11  Score=120.24  Aligned_cols=112  Identities=21%  Similarity=0.284  Sum_probs=90.1

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCC-CCC-ccccCcccCCChHHHHhccCCCCCC---------CCCCccccccccc
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSV-HQP-KCAVCQKLSKSFESLREHLTGPLSK---------AHCSGIFSDRGCN   82 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~-~~~-~C~~C~~~f~~~~~l~~H~~~~~~c---------~~Cgk~f~~~~C~   82 (353)
                      ...|+.|.+.+.+-..|+.|++.- |.. +.. .|..|..+|.....|.+|+.-..+|         ..|.+.|   +|.
T Consensus       210 lltcpycdrgykrltslkeHikyr-hekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKF---KCt  285 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYR-HEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKF---KCT  285 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHH-HhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccc---ccc
Confidence            457999999999999999999741 432 222 9999999999999999999222222         3344444   699


Q ss_pred             cccccccCchhHHHHHHHhcCCCCCCcccCCcchhhhhhhccccccc
Q 018586           83 LCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAIDEK  129 (353)
Q Consensus        83 ~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~~~~~~~e~  129 (353)
                      +|||+|..+-+|+.|.|+|+|||||.|++|+-.++.+.-|+.++..+
T Consensus       286 ECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSK  332 (1007)
T KOG3623|consen  286 ECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSK  332 (1007)
T ss_pred             ccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccccc
Confidence            99999999999999999999999999999998888877787776544

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.13  E-value=2.8e-11  Score=119.51  Aligned_cols=46  Identities=17%  Similarity=0.257  Sum_probs=41.0

Q ss_pred             cccccccccCchhHHHHHHHhcCCCCCCcccCCcchhhhhhhcccc
Q 018586           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        81 C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                      |+.||+.|...+.|..|+|+|+++|||.|.-|.+-+--...+|.+.
T Consensus       882 C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHM  927 (958)
T KOG1074|consen  882 CNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHM  927 (958)
T ss_pred             hccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhh
Confidence            9999999999999999999999999999999987777666666544

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.08  E-value=3.8e-11  Score=100.09  Aligned_cols=108  Identities=23%  Similarity=0.288  Sum_probs=86.0

Q ss_pred             CCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccc
Q 018586            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCN   82 (353)
Q Consensus         7 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~   82 (353)
                      -+.++...|.|..|+|.|....-|++|++.  |+..+. .|..||+.|...-.|.+|+   +|..|+          .|+
T Consensus       110 gsssd~d~ftCrvCgK~F~lQRmlnrh~kc--h~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpy----------kc~  177 (267)
T KOG3576|consen  110 GSSSDQDSFTCRVCGKKFGLQRMLNRHLKC--HSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPY----------KCS  177 (267)
T ss_pred             cCCCCCCeeeeehhhhhhhHHHHHHHHhhh--ccHHHHHHHhhccCcccchhhhhhhhccccCcccc----------chh
Confidence            344567789999999999999999999999  888777 9999999999999999998   565565          588


Q ss_pred             cccccccCchhHHHHHHH-hc----------CCCCCCcccCCcchhhhhhhcccc
Q 018586           83 LCMNIFDSPSSLIKHKEA-CS----------LSAPVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        83 ~C~k~F~~~s~L~~H~~~-h~----------~~k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                      .|+|+|+++.+|..|.+. |.          ++|.|.|+.|+.+.+....+..+.
T Consensus       178 ~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~  232 (267)
T KOG3576|consen  178 LCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHL  232 (267)
T ss_pred             hhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHH
Confidence            999999999999999664 42          466777777776655444444433

>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification]

Probab=99.05  E-value=4.9e-10  Score=90.52  Aligned_cols=154  Identities=18%  Similarity=0.292  Sum_probs=108.2

Q ss_pred             CCCceeeccCccccccC--CCCccceeEEeeecCCCCeEE---eeeccCC----CCcccccccc---CCCCHhhhcCCCC
Q 018586          133 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVIF---HTYVQPQ----LPVTNYRYEV---TGLTEEDIKNAMP  200 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~~~---~~lv~P~----~~i~~~~~~~---~GIt~e~l~~~~~  200 (353)
                      ...+.+.+||||||+++  ++++|+  +..|-|.+.+++-   +..|...    ..+.+++++-   +|++..-.+...+
T Consensus         4 ~~~nLiWIDlEMTGLd~~~drIIEi--A~iVTD~~Lnilaegp~~~Ihq~~e~L~~Mdew~~~~H~~sGL~~rV~~S~~t   81 (184)
T COG1949           4 NKNNLIWIDLEMTGLDPERDRIIEI--ATIVTDANLNILAEGPVIAIHQSDEQLAKMDEWNTETHGRSGLTERVKASTVT   81 (184)
T ss_pred             cCCceEEEeeeeccCCcCcceEEEE--EEEEecCcccccccCceEEEeCCHHHHHHHHHHHHHccccccHHHHHHHhhcc
Confidence            45679999999999984  556666  4444466766653   3333333    2455666655   4777776677789


Q ss_pred             hHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCCC------CceeecccccCCcccCCCCCcHHHH
Q 018586          201 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD------HMLRDTAKYRPLMKTNLVSHSLKYL  274 (353)
Q Consensus       201 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~------~~~~Dt~~l~~~~~~~~~~~~L~~l  274 (353)
                      ..++..++++||+.--        ..+.++|.|.++.-|..||....|.      ++.+|+..             |++|
T Consensus        82 ~~~aE~~~l~flkkwv--------p~~~spicGNSI~qDRrFl~r~MP~Le~yfHYR~lDVST-------------lKEL  140 (184)
T COG1949          82 EAEAEAQTLDFLKKWV--------PKGVSPICGNSIAQDRRFLFRYMPKLEAYFHYRYLDVST-------------LKEL  140 (184)
T ss_pred             HHHHHHHHHHHHHHhC--------CCCCCCCccchhhHHHHHHHHHhhhHHHHhhhHhhhHHH-------------HHHH
Confidence            9999999999994332        2377899999999999999966664      55677653             3444


Q ss_pred             HHHH-----hCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          275 TRTY-----LGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       275 ~~~~-----~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      |.+.     .|.. .++.|+||+|.+-...-++.+++.+-.
T Consensus       141 a~RW~P~i~~~~~-K~~~H~Al~DI~ESI~EL~~YR~~f~~  180 (184)
T COG1949         141 ARRWNPEILAGFK-KGGTHRALDDIRESIAELRYYREHFLK  180 (184)
T ss_pred             HHhhCcHhhhccc-cccchhHHHHHHHHHHHHHHHHHHhcc
Confidence            4333     2323 566999999999999998888887543

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.03  E-value=5.9e-11  Score=106.64  Aligned_cols=106  Identities=26%  Similarity=0.428  Sum_probs=92.1

Q ss_pred             eccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc-------CCCCCCCCCCcccccc---------
Q 018586           17 CVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-------TGPLSKAHCSGIFSDR---------   79 (353)
Q Consensus        17 C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~-------~~~~~c~~Cgk~f~~~---------   79 (353)
                      +..|-+.+..++.|.+|.+.  |++++. .|..||..|+.+..|-.|.       ..++.|..|-|+|...         
T Consensus       182 W~~Ct~~~~~k~~LreH~r~--Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~r  259 (467)
T KOG3608|consen  182 WAMCTKHMGNKYRLREHIRT--HSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVR  259 (467)
T ss_pred             chhhhhhhccHHHHHHHHHh--cCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHH
Confidence            34699999999999999999  999999 9999999999999999998       4578899999999875         


Q ss_pred             -----ccccccccccCchhHHHHHH-HhcCCCCCCcccCCcchhhhhhhcc
Q 018586           80 -----GCNLCMNIFDSPSSLIKHKE-ACSLSAPVPFEKTLSNAESQKKISG  124 (353)
Q Consensus        80 -----~C~~C~k~F~~~s~L~~H~~-~h~~~k~~~c~~~~~~~~~~~~~~~  124 (353)
                           +|+.|+-+...+++|..|++ .|+.+|||+|..|..+.-..+.+.+
T Consensus       260 Hvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~k  310 (467)
T KOG3608|consen  260 HVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAK  310 (467)
T ss_pred             hhhcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHH
Confidence                 49999999999999999998 5889999999998766444444443

>COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair]

Probab=99.02  E-value=8.5e-10  Score=100.64  Aligned_cols=170  Identities=19%  Similarity=0.224  Sum_probs=123.1

Q ss_pred             CCceeeccCccccccC--CCCccceeEEeeecCCCCe---EEeeeccCCCC-cc-ccccccCCCCHhhhc-CCCChHHHH
Q 018586          134 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV---IFHTYVQPQLP-VT-NYRYEVTGLTEEDIK-NAMPLKEVK  205 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~---~~~~lv~P~~~-i~-~~~~~~~GIt~e~l~-~~~~~~~v~  205 (353)
                      ...|.+.|-||.|..+  ++..+. +.|.- |.+-++   ...-|++|... +| +.+.-|||||++... ++.+-.+..
T Consensus         8 ~~tF~~yDYETfG~~Pa~DRPaQF-AgiRT-D~~~NiIgeP~~fyCkpsdDyLP~P~a~LITGITPQ~~~~~G~~E~~F~   85 (475)
T COG2925           8 QPTFLFYDYETFGVHPALDRPAQF-AGIRT-DIEFNIIGEPIVFYCKPADDYLPQPGAVLITGITPQEAREKGINEAAFA   85 (475)
T ss_pred             CCcEEEEehhhcCCCcccccchhh-heeec-cccccccCCCeEEEecCccccCCCCCceeeecCCHHHHHhcCCChHHHH
Confidence            4569999999999873  455555 44443 344444   36889999853 33 567789999988865 778888888


Q ss_pred             HHHHHHHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhcCc------CC----------CCceeecccccCCccc----
Q 018586          206 DKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMN------YP----------DHMLRDTAKYRPLMKT----  264 (353)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~~~------~~----------~~~~~Dt~~l~~~~~~----  264 (353)
                      ..|...+            .--++.++|+| +.||-.+-+..      -|          +..++|++...--+.|    
T Consensus        86 ~~I~~~l------------s~P~Tcv~GYNniRFDDEvtRy~fyRNF~DPYa~sWqngNSRWDLLD~~RacyALRPeGI~  153 (475)
T COG2925          86 ARIHAEL------------TQPNTCVLGYNNIRFDDEVTRYIFYRNFYDPYAWSWQNGNSRWDLLDVVRACYALRPEGIN  153 (475)
T ss_pred             HHHHHHh------------CCCCeeeecccccccchHHHHHHHHHhcCchhhhhhcCCCchhHHHHHHHHHHhcCcccCC
Confidence            9998888            33678999987 88898887711      11          1223444443323333    


Q ss_pred             ------CCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhhhhhhcccCC
Q 018586          265 ------NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNT  319 (353)
Q Consensus       265 ------~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~~~~~~~~~~  319 (353)
                            +..+++|+.|...- |+. .+++|+|++|++||..+.+.+..+-..+++|-++..
T Consensus       154 Wp~n~dG~pSFkLEhLt~AN-gie-H~nAHdAmsDVyATIamAklvk~~QPrLfdy~f~~R  212 (475)
T COG2925         154 WPENDDGLPSFKLEHLTKAN-GIE-HSNAHDAMSDVYATIAMAKLVKTAQPRLFDYLFQLR  212 (475)
T ss_pred             CCcCCCCCcchhhHHHhhcc-ccc-cchhhHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhc
Confidence                  34479999999988 888 677999999999999999999988888888876543

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.01  E-value=2.7e-10  Score=112.61  Aligned_cols=48  Identities=31%  Similarity=0.642  Sum_probs=46.0

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~   63 (353)
                      +++|-.|.+.|.+.+.|+.|.|.  |++++| +|+.||..|..+.+|+.|.
T Consensus       353 khkCr~CakvfgS~SaLqiHlRS--HTGERPfqCnvCG~~FSTkGNLKvH~  401 (958)
T KOG1074|consen  353 KHKCRFCAKVFGSDSALQIHLRS--HTGERPFQCNVCGNRFSTKGNLKVHF  401 (958)
T ss_pred             cchhhhhHhhcCchhhhhhhhhc--cCCCCCeeecccccccccccceeeee
Confidence            57899999999999999999999  999999 9999999999999999997

>KOG3242 consensus Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification]

Probab=98.98  E-value=8.3e-10  Score=90.00  Aligned_cols=156  Identities=17%  Similarity=0.254  Sum_probs=109.4

Q ss_pred             CCCceeeccCcccccc--CCCCccceeEEeeecCCCCeE---EeeeccCCC----Ccccccccc---CCCCHhhhcCCCC
Q 018586          133 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI---FHTYVQPQL----PVTNYRYEV---TGLTEEDIKNAMP  200 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~~g~~~---~~~lv~P~~----~i~~~~~~~---~GIt~e~l~~~~~  200 (353)
                      -..++|.+||||||++  .+.++|+  +..|-|.+..++   ++..|+...    .+.++...-   +|+|..-++...+
T Consensus        24 l~q~lVWiD~EMTGLdvekd~i~Ei--acIITD~dL~~~~egpd~vI~~~~evld~MneWc~ehhg~SGLt~kv~~S~~t  101 (208)
T KOG3242|consen   24 LKQPLVWIDCEMTGLDVEKDRIIEI--ACIITDGDLNPVAEGPDLVIHQPKEVLDKMNEWCIEHHGNSGLTEKVLASKIT  101 (208)
T ss_pred             ccCceEEEeeeccccccccceeEEE--EEEEecCCccccccCccchhcCCHHHHHHHHHHHHHhccchhHHHHHHHhhcc
Confidence            4567999999999987  5667666  444545655553   567776553    344444433   5888888889999


Q ss_pred             hHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCC------CCceeeccc---ccCCcccCCCCCcH
Q 018586          201 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------DHMLRDTAK---YRPLMKTNLVSHSL  271 (353)
Q Consensus       201 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~------~~~~~Dt~~---l~~~~~~~~~~~~L  271 (353)
                      +++|-.++++||.-.      .  ..+..+|.|.++-.|..||.-.+|      .+++||+..   |++.++|....   
T Consensus       102 l~~aEnevl~yikk~------i--p~~~~~laGNSV~~DrlFl~k~mPk~~~~lhyrivDVStIkeL~~Rw~P~~~~---  170 (208)
T KOG3242|consen  102 LADAENEVLEYIKKH------I--PKGKCPLAGNSVYMDRLFLKKYMPKLIKHLHYRIVDVSTIKELARRWYPDIKA---  170 (208)
T ss_pred             HHHHHHHHHHHHHHh------C--CCCCCCccCcchhhHHHHHHHHhHHHHHhcceeeeeHHHHHHHHHHhCchhhc---
Confidence            999999999999322      2  247779999999999999994444      377889764   44444443111   


Q ss_pred             HHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchh
Q 018586          272 KYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH  309 (353)
Q Consensus       272 ~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~  309 (353)
                            +  -+-....|||+.|.+....-+..+++.+-
T Consensus       171 ------~--aPkK~~~HrAldDI~ESI~ELq~Yr~nif  200 (208)
T KOG3242|consen  171 ------R--APKKKATHRALDDIRESIKELQYYRENIF  200 (208)
T ss_pred             ------c--CcccccccchHHHHHHHHHHHHHHHHHhc
Confidence                  1  02133389999999999988888887753

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=98.80  E-value=2e-09  Score=104.88  Aligned_cols=78  Identities=28%  Similarity=0.548  Sum_probs=61.9

Q ss_pred             CCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCcccccccccccc
Q 018586           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCM   85 (353)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~   85 (353)
                      +.+..|.|+.|+|.|...+.|.+|.--  |+|++| +|..|.+.|..+..|..|+   .|++++          .|..|+
T Consensus       890 te~gmyaCDqCDK~FqKqSSLaRHKYE--HsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPf----------QCdKCl  957 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQSSLARHKYE--HSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPF----------QCDKCL  957 (1007)
T ss_pred             CccccchHHHHHHHHHhhHHHHHhhhh--hcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcc----------hhhhhh
Confidence            445678899999999888889999887  888888 8888888888888888887   566665          467777


Q ss_pred             ccccCchhHHHHHH
Q 018586           86 NIFDSPSSLIKHKE   99 (353)
Q Consensus        86 k~F~~~s~L~~H~~   99 (353)
                      |.|....+..+||.
T Consensus       958 KRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  958 KRFSHSGSYSQHMN  971 (1007)
T ss_pred             hhcccccchHhhhc
Confidence            77777777777774

>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases

Probab=98.71  E-value=4e-08  Score=85.54  Aligned_cols=125  Identities=15%  Similarity=0.147  Sum_probs=85.0

Q ss_pred             eeccCccccc----cCCCCccceeEEeeecC-CCCeE-EeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 018586          138 VAMDCEMVGG----GSNGTLDLCARVCLVDE-DENVI-FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  211 (353)
Q Consensus       138 ~~~D~Ettg~----~~~~~~~il~~v~ivd~-~g~~~-~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~  211 (353)
                      +++|+||+|.    ++. ..++ ..++++.. +|... +.....+.....+      ||+..+|...++..+++..|.++
T Consensus         2 ~~~DIEt~~~~~~p~~~-~d~I-i~I~~~~~~~g~~~~~~~~~~~~~~~~~------~i~~~~v~~~~~E~~lL~~f~~~   73 (199)
T cd05160           2 LSFDIETTPPVGGPEPD-RDPI-ICITYADSFDGVKVVFLLKTSTVGDDIE------FIDGIEVEYFADEKELLKRFFDI   73 (199)
T ss_pred             ccEEEeecCCCCCcCCC-CCCE-EEEEEEEeeCCceeeEEEeecccCCcCC------CCCCceEEEeCCHHHHHHHHHHH
Confidence            6799999997    221 2223 24444433 55543 2222222221111      88888999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-----CcCC------------------------CCceeecccccCC
Q 018586          212 LNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYP------------------------DHMLRDTAKYRPL  261 (353)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~------------------------~~~~~Dt~~l~~~  261 (353)
                      +.+.           ...+|||||+ .||+.+|.     +..+                        ...++|+..+.+.
T Consensus        74 i~~~-----------dpdiivg~N~~~FD~~~L~~R~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~gr~~~D~~~~~r~  142 (199)
T cd05160          74 IREY-----------DPDILTGYNIDDFDLPYLLKRAEALGIKLTDGIYRRSGGEKSSGSTERIAVKGRVVFDLLAAYKR  142 (199)
T ss_pred             HHhc-----------CCCEEEEeccCCCcHHHHHHHHHHhCCCcccccccccCCCccCCcccceeeeccEeeehHHHHHH
Confidence            9432           1259999999 89999988     1111                        1246899888877


Q ss_pred             cccCCCCCcHHHHHHHHhCCc
Q 018586          262 MKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       262 ~~~~~~~~~L~~l~~~~~~~~  282 (353)
                      ..+ ..+|+|+++++.++|..
T Consensus       143 ~~~-l~sy~L~~v~~~~l~~~  162 (199)
T cd05160         143 DFK-LKSYTLDAVAEELLGEG  162 (199)
T ss_pred             hcC-cccCCHHHHHHHHhCCC
Confidence            665 78899999999997765

The 3'-5' exonuclease domain of family-B DNA polymerases. This domain has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The exonuclease domain of family B polymerase also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members include Escherichia coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative

>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases

Probab=98.67  E-value=2e-07  Score=80.45  Aligned_cols=145  Identities=21%  Similarity=0.250  Sum_probs=96.8

Q ss_pred             CCceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHh
Q 018586          134 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~  213 (353)
                      ..+++++|+|++|..+-. ..+ ..+.+....+...+   + |.   ..  +.        ..+++++.+++..+.+++.
T Consensus         4 ~~~~~a~d~e~~~~~~~~-~~i-~~l~~~~~~~~~~~---~-~~---~~--~~--------~~~~~~~~~~~~~l~~~l~   64 (193)
T cd06139           4 KAKVFAFDTETTSLDPMQ-AEL-VGISFAVEPGEAYY---I-PL---GH--DY--------GGEQLPREEVLAALKPLLE   64 (193)
T ss_pred             cCCeEEEEeecCCCCcCC-CeE-EEEEEEcCCCCEEE---E-ec---CC--Cc--------cccCCCHHHHHHHHHHHHh
Confidence            456789999999875311 122 34555434443322   1 10   00  00        1145678889999999992


Q ss_pred             cCCCCcccccCCCCCcEEEecccHHHHHHhcC---cCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcC-C-----
Q 018586          214 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRM---NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDI-Q-----  284 (353)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~---~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~-~-----  284 (353)
                                  +.+.++|+||+.||+.+|..   ..+ ..++||+.++..+.|....++|+++++.|++..+ .     
T Consensus        65 ------------~~~~~~v~hn~k~d~~~l~~~gi~~~-~~~~Dt~l~a~ll~p~~~~~~l~~l~~~~l~~~~~~~~~~~  131 (193)
T cd06139          65 ------------DPSIKKVGQNLKFDLHVLANHGIELR-GPAFDTMLASYLLNPGRRRHGLDDLAERYLGHKTISFEDLV  131 (193)
T ss_pred             ------------CCCCcEEeeccHHHHHHHHHCCCCCC-CCcccHHHHHHHhCCCCCCCCHHHHHHHHhCCCCccHHHHc
Confidence                        23358999999999999972   222 4578999999988886535799999999976541 0     


Q ss_pred             ----------C-----CCCChHHHHHHHHHHHHHHHhchhh
Q 018586          285 ----------S-----GVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       285 ----------~-----~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                                .     ..|.|..||.++.+|+..+..+.++
T Consensus       132 ~k~~~~~~~~~~~~~~~~~ya~~d~~~~~~l~~~l~~~l~~  172 (193)
T cd06139         132 GKGKKQITFDQVPLEKAAEYAAEDADITLRLYELLKPKLKE  172 (193)
T ss_pred             CCCcCcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                      0     1235888999999999999887643

Escherichia coli-like Polymerase I (Pol I), a subgroup of family-A DNA polymerases, contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase domain. The exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The 3'-5' exonuclease domain of DNA polymerases has a fundamental role in reducing polymerase errors and is involved in proofreading activity. E. coli DNA Pol I is involved in genome replication but is not the main replicating enzyme. It is also implicated in DNA repair.

>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides

Probab=98.64  E-value=3.2e-07  Score=77.83  Aligned_cols=92  Identities=28%  Similarity=0.356  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcC--cCCCCceeecccccCCcccCCCCCcHHHHHHHHhC-
Q 018586          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM--NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLG-  280 (353)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~--~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~-  280 (353)
                      +.+.+.+++            .+.+.+.||||+.||+.+|..  +.+...++|| .++..+.....+++|++|+..++| 
T Consensus        65 ~~~~l~~ll------------~~~~i~kv~~n~~~D~~~L~~~~~i~~~~~~D~-~l~~~~l~~~~~~~L~~L~~~~l~~  131 (176)
T PF01612_consen   65 ILDALKELL------------EDPNIIKVGHNAKFDLKWLYRSFGIDLKNVFDT-MLAAYLLDPTRSYSLKDLAEEYLGN  131 (176)
T ss_dssp             HHHHHHHHH------------TTTTSEEEESSHHHHHHHHHHHHTS--SSEEEH-HHHHHHTTTSTTSSHHHHHHHHHSE
T ss_pred             hHHHHHHHH------------hCCCccEEEEEEechHHHHHHHhccccCCccch-hhhhhcccccccccHHHHHHHHhhh
Confidence            777888888            345679999999999999993  3344568999 444444433344999999999999 


Q ss_pred             CcCCCC----CC---C---------hHHHHHHHHHHHHHHHhch
Q 018586          281 YDIQSG----VH---D---------PYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       281 ~~~~~~----~H---~---------Al~Da~~t~~l~~~~~~~~  308 (353)
                      ......    .-   +         |..||..+.+||..+..+.
T Consensus       132 ~~~~~~~~~~~~~~~~~l~~~~~~YAa~D~~~~~~l~~~l~~~l  175 (176)
T PF01612_consen  132 IDLDKKEQMSDWRKARPLSEEQIEYAAQDAVVTFRLYEKLKPQL  175 (176)
T ss_dssp             EE-GHCCTTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             ccCcHHHhhccCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            433211    12   2         5669999999999998764

This domain consists of the amino-terminal half of the Klenow fragment in E. coli polI it is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D) [].; GO: 0003676 nucleic acid binding, 0008408 3'-5' exonuclease activity, 0006139 nucleobase-containing compound metabolic process, 0005622 intracellular; PDB: 2HBK_A 2HBJ_A 2HBM_A 2HBL_A 2FC0_A 2FBY_A 2FBX_A 2FBT_A 2FBV_A 1YT3_A ....

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=98.63  E-value=2.4e-09  Score=89.46  Aligned_cols=102  Identities=25%  Similarity=0.312  Sum_probs=80.8

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CC-CCCCCCCCcccc
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TG-PLSKAHCSGIFS   77 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~-~~~c~~Cgk~f~   77 (353)
                      |+....|+.-|.|-|.-||+.|..--+|++|+++  |++.+| +|..|++.|.+.-+|..|.   .+ +.++..=.++-.
T Consensus       134 nrh~kch~~vkr~lct~cgkgfndtfdlkrh~rt--htgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~k  211 (267)
T KOG3576|consen  134 NRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRT--HTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAK  211 (267)
T ss_pred             HHHhhhccHHHHHHHhhccCcccchhhhhhhhcc--ccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhh
Confidence            4556788889999999999999999999999999  999999 9999999999999999998   22 111111112222


Q ss_pred             ccccccccccccCchhHHHHHHHhcCCCC
Q 018586           78 DRGCNLCMNIFDSPSSLIKHKEACSLSAP  106 (353)
Q Consensus        78 ~~~C~~C~k~F~~~s~L~~H~~~h~~~k~  106 (353)
                      ...|..||.+-.....+..|...|+...|
T Consensus       212 l~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  212 LYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             eeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            23589999988888888899998876555

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=98.57  E-value=2.7e-08  Score=89.77  Aligned_cols=139  Identities=17%  Similarity=0.223  Sum_probs=105.0

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCcccccc--
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDR--   79 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~--   79 (353)
                      .|+|+++|.-.|+.||.-|..+..|-.|.+.-.--...+ .|..|.+.|....-|..|+   ...+.|+.|.-+.+..  
T Consensus       199 ~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ss  278 (467)
T KOG3608|consen  199 IRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASS  278 (467)
T ss_pred             HHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHH
Confidence            578999999999999999999999999986400223445 9999999999999999998   3467888888777754  


Q ss_pred             ---------------ccccccccccCchhHHHHHHHhcCCCCCCccc--CCcchhhhhhhcccccccc-ccCCCceeecc
Q 018586           80 ---------------GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK--TLSNAESQKKISGAIDEKR-TCRGPKAVAMD  141 (353)
Q Consensus        80 ---------------~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~--~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~D  141 (353)
                                     +|..|++.|...+.|.+|..+|+ +..|.|.-  |..+.........+..+-. ...+..|.+-=
T Consensus       279 L~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~  357 (467)
T KOG3608|consen  279 LTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHC  357 (467)
T ss_pred             HHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeec
Confidence                           39999999999999999999998 78888855  7766555555544333322 34445555555


Q ss_pred             Cccc
Q 018586          142 CEMV  145 (353)
Q Consensus       142 ~Ett  145 (353)
                      |+-+
T Consensus       358 Cdr~  361 (467)
T KOG3608|consen  358 CDRF  361 (467)
T ss_pred             chhh
Confidence            5544

>PHA02768 hypothetical protein; Provisional

Probab=98.35  E-value=2.1e-07  Score=61.90  Aligned_cols=42  Identities=19%  Similarity=0.483  Sum_probs=37.0

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHH
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESL   59 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l   59 (353)
                      .|+|+.||+.|...++|..|+++  |+  ++ +|..|++.|.+.+.+
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~--H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK--HN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh--cC--CcccCCcccceeccccee
Confidence            48999999999999999999999  87  45 899999998877665

>PHA02768 hypothetical protein; Provisional

Probab=98.31  E-value=3.5e-07  Score=60.84  Aligned_cols=36  Identities=17%  Similarity=0.328  Sum_probs=31.3

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccCCcchh
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAE  117 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~  117 (353)
                      .|+.||+.|.+.++|..|+++|+  +|++|..|+..+.
T Consensus         7 ~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~   42 (55)
T PHA02768          7 ECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISL   42 (55)
T ss_pred             CcchhCCeeccHHHHHHHHHhcC--CcccCCcccceec
Confidence            69999999999999999999998  7888888865433

>PHA00733 hypothetical protein

Probab=98.28  E-value=6.7e-07  Score=71.75  Aligned_cols=80  Identities=21%  Similarity=0.257  Sum_probs=62.5

Q ss_pred             CCCceeeccccccccChHHHHHH------HhhhcCCCCCC-ccccCcccCCChHHHHhccC-CCCCCCCCCccccccccc
Q 018586           11 STARHKCVACYKQFKRKDHLIEH------MKISYHSVHQP-KCAVCQKLSKSFESLREHLT-GPLSKAHCSGIFSDRGCN   82 (353)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H------~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~~-~~~~c~~Cgk~f~~~~C~   82 (353)
                      .++++.|..|.+.|.....|..+      +..  ++ .++ .|..|++.|.+...|..|+. ...+.          .|+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~--~~-~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~----------~C~  103 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTS--KA-VSPYVCPLCLMPFSSSVSLKQHIRYTEHSK----------VCP  103 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhccc--CC-CCCccCCCCCCcCCCHHHHHHHHhcCCcCc----------cCC
Confidence            46889999999988877666654      222  33 556 99999999999999999983 12222          689


Q ss_pred             cccccccCchhHHHHHHHhcC
Q 018586           83 LCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        83 ~C~k~F~~~s~L~~H~~~h~~  103 (353)
                      .|+++|...++|..|+...++
T Consensus       104 ~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        104 VCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCCccCCHHHHHHHHHHhcC
Confidence            999999999999999987664

>PRK05755 DNA polymerase I; Provisional

Probab=98.25  E-value=5e-06  Score=87.90  Aligned_cols=137  Identities=23%  Similarity=0.241  Sum_probs=94.7

Q ss_pred             CCceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHh
Q 018586          134 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~  213 (353)
                      ...++++|+|++|.++.... + ..+.+...+|...+   + |-          +++.          .++++.|.+++ 
T Consensus       314 ~~~~~a~DtEt~~l~~~~~~-i-~~i~ls~~~g~~~~---i-p~----------~~i~----------~~~l~~l~~~L-  366 (880)
T PRK05755        314 AAGLFAFDTETTSLDPMQAE-L-VGLSFAVEPGEAAY---I-PL----------DQLD----------REVLAALKPLL-  366 (880)
T ss_pred             ccCeEEEEeccCCCCccccc-E-EEEEEEeCCCcEEE---E-ec----------cccc----------HHHHHHHHHHH-
Confidence            45789999999998643222 2 23444334443221   1 11          1121          16788899999 


Q ss_pred             cCCCCcccccCCCCCcEEEecccHHHHHHhcC-cCC-CCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCC------
Q 018586          214 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-NYP-DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS------  285 (353)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-~~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~------  285 (353)
                                 ++...++|+||+.||+.+|.. +.+ ...++||+..+..+.+... ++|++|++.|+|..+..      
T Consensus       367 -----------~d~~v~kV~HNakfDl~~L~~~gi~~~~~~~DT~iAa~Ll~~~~~-~~L~~L~~~ylg~~~~~~~~~~g  434 (880)
T PRK05755        367 -----------EDPAIKKVGQNLKYDLHVLARYGIELRGIAFDTMLASYLLDPGRR-HGLDSLAERYLGHKTISFEEVAG  434 (880)
T ss_pred             -----------hCCCCcEEEeccHhHHHHHHhCCCCcCCCcccHHHHHHHcCCCCC-CCHHHHHHHHhCCCccchHHhcC
Confidence                       234456899999999999982 222 2458999998888887653 99999999998776310      


Q ss_pred             ------------CCCChHHHHHHHHHHHHHHHhchh
Q 018586          286 ------------GVHDPYEDCVSVMRLYKRFRRQDH  309 (353)
Q Consensus       286 ------------~~H~Al~Da~~t~~l~~~~~~~~~  309 (353)
                                  ..|.|..||.+++.||..+..+..
T Consensus       435 k~~~~~~~ple~~~~YAa~Dv~~~~~L~~~L~~~L~  470 (880)
T PRK05755        435 KQLTFAQVDLEEAAEYAAEDADVTLRLHEVLKPKLL  470 (880)
T ss_pred             CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        137899999999999999998754

>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

Probab=98.25  E-value=5.5e-06  Score=63.22  Aligned_cols=30  Identities=40%  Similarity=0.558  Sum_probs=23.2

Q ss_pred             cEEEecccHHHHHHhc-------CcCC--CCceeecccc
Q 018586          229 RLLVGHGLEHDLDSLR-------MNYP--DHMLRDTAKY  258 (353)
Q Consensus       229 ~~lvgh~~~~D~~~l~-------~~~~--~~~~~Dt~~l  258 (353)
                      .++||||+.||+.||+       ...|  ..+++||+.+
T Consensus        45 ~v~V~hn~~fD~~fL~~~~~~~~~~~p~~~~~~lDT~~l   83 (96)
T cd06125          45 AILVGHNGSFDLPFLNNRCAELGLKYPLLAGSWIDTIKL   83 (96)
T ss_pred             CEEEEeCcHHhHHHHHHHHHHcCCCCCCcCCcEEEehHH
Confidence            6899999999999998       2222  2568888876

The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy

>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins

Probab=98.16  E-value=2.1e-05  Score=68.08  Aligned_cols=91  Identities=15%  Similarity=0.284  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCC--------CCceeecccccCCcccC----------
Q 018586          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP--------DHMLRDTAKYRPLMKTN----------  265 (353)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~--------~~~~~Dt~~l~~~~~~~----------  265 (353)
                      +.+.+.+++            .+.+.+-|||++.+|+..|.-.++        ...++|++.++..+...          
T Consensus        70 ~~~~L~~ll------------~d~~i~KVg~~~~~D~~~L~~~~~~~~~~~~~~~~v~Dl~~~a~~l~~~~~~~~~~~~~  137 (193)
T cd06146          70 WDRLLKRLF------------EDPDVLKLGFGFKQDLKALSASYPALKCMFERVQNVLDLQNLAKELQKSDMGRLKGNLP  137 (193)
T ss_pred             HHHHHHHHh------------CCCCeeEEEechHHHHHHHHHhcCccccccccCCceEEHHHHHHHHhhccccccccccC
Confidence            344566777            234467799999999999994332        24689999877655431          


Q ss_pred             CCCCcHHHHHHHHhCCcCCCC------C---------CChHHHHHHHHHHHHHHHh
Q 018586          266 LVSHSLKYLTRTYLGYDIQSG------V---------HDPYEDCVSVMRLYKRFRR  306 (353)
Q Consensus       266 ~~~~~L~~l~~~~~~~~~~~~------~---------H~Al~Da~~t~~l~~~~~~  306 (353)
                      ...++|+.|++.+||.++...      .         +-|..||..+..||.++.+
T Consensus       138 ~~~~sL~~l~~~~lg~~l~K~~q~SdW~~rpLs~~Qi~YAA~Da~~l~~l~~~L~~  193 (193)
T cd06146         138 SKTKGLADLVQEVLGKPLDKSEQCSNWERRPLREEQILYAALDAYCLLEVFDKLLE  193 (193)
T ss_pred             cccCCHHHHHHHHhCCCcCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            357899999999999887654      1         4478899999999998864

The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.

>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases

Probab=98.00  E-value=5.5e-05  Score=65.58  Aligned_cols=121  Identities=15%  Similarity=0.187  Sum_probs=75.3

Q ss_pred             CCceeeccCcccccc--CC-CCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHH
Q 018586          134 GPKAVAMDCEMVGGG--SN-GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~--~~-~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~  210 (353)
                      .-+++++|+||++.+  ++ ....| ..++++...++.++..  .+.             ....+....+-.+++.+|.+
T Consensus         2 ~l~i~~fDIEt~~~~g~p~~~~d~I-i~Is~~~~~~~~~~~~--~~~-------------~~~~v~~~~~E~~lL~~F~~   65 (195)
T cd05780           2 DLKILSFDIEVLNHEGEPNPEKDPI-IMISFADEGGNKVITW--KKF-------------DLPFVEVVKTEKEMIKRFIE   65 (195)
T ss_pred             CceEEEEEEEecCCCCCCCCCCCcE-EEEEEecCCCceEEEe--cCC-------------CCCeEEEeCCHHHHHHHHHH
Confidence            346889999998421  12 12233 3555554444433211  110             11133445667899999999


Q ss_pred             HHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-------CcCC----------------------CCceeecccccC
Q 018586          211 ILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYP----------------------DHMLRDTAKYRP  260 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~----------------------~~~~~Dt~~l~~  260 (353)
                      ++.+.+           ..+|||||. .||+.+|.       +..+                      ....+|+..+.+
T Consensus        66 ~i~~~d-----------pdiivgyN~~~FD~pyL~~R~~~~gi~~~~~r~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~~  134 (195)
T cd05780          66 IVKEKD-----------PDVIYTYNGDNFDFPYLKKRAEKLGIELDLGRDGSEIKIQRGGFNNASEIKGRIHVDLYPVAR  134 (195)
T ss_pred             HHHHcC-----------CCEEEecCCCCCcHHHHHHHHHHhCCCCccccCCCceeEeecceeeeeccCCeEEEeHHHHHH
Confidence            995432           359999996 58999987       2211                      123677777665


Q ss_pred             CcccCCCCCcHHHHHHHHhCCc
Q 018586          261 LMKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       261 ~~~~~~~~~~L~~l~~~~~~~~  282 (353)
                      .. ....+|+|+.+++.+||.+
T Consensus       135 ~~-~~l~sy~L~~v~~~~Lg~~  155 (195)
T cd05780         135 RT-LNLTRYTLERVYEELFGIE  155 (195)
T ss_pred             hh-CCCCcCcHHHHHHHHhCCC
Confidence            53 3567999999999998987

The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show

>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins

Probab=97.96  E-value=0.00012  Score=61.91  Aligned_cols=79  Identities=19%  Similarity=0.205  Sum_probs=61.7

Q ss_pred             CCcEEEecccHHHHHHhc--CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCC--CC------C---------
Q 018586          227 KARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ--SG------V---------  287 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~--~~------~---------  287 (353)
                      .+.+.|||++.+|+..|.  .+.....++|++.++..+.+.....+|+.|++.++|..+.  ..      .         
T Consensus        72 ~~i~kv~~~~k~D~~~L~~~~g~~~~~~~Dl~~aa~ll~~~~~~~~l~~l~~~~l~~~~~k~k~~~~s~W~~rpLt~~qi  151 (170)
T cd06141          72 PSILKVGVGIKGDARKLARDFGIEVRGVVDLSHLAKRVGPRRKLVSLARLVEEVLGLPLSKPKKVRCSNWEARPLSKEQI  151 (170)
T ss_pred             CCeeEEEeeeHHHHHHHHhHcCCCCCCeeeHHHHHHHhCCCcCCccHHHHHHHHcCcccCCCCCcccCCCCCCCCCHHHH
Confidence            556789999999999996  2332344699999988887764556999999999999876  21      1         


Q ss_pred             CChHHHHHHHHHHHHHHH
Q 018586          288 HDPYEDCVSVMRLYKRFR  305 (353)
Q Consensus       288 H~Al~Da~~t~~l~~~~~  305 (353)
                      +-|..||..+..||..+.
T Consensus       152 ~YAa~Da~~~~~l~~~l~  169 (170)
T cd06141         152 LYAATDAYASLELYRKLL  169 (170)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            447889999999998875

WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability.

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.95  E-value=1.2e-05  Score=79.10  Aligned_cols=90  Identities=19%  Similarity=0.445  Sum_probs=63.8

Q ss_pred             CCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhccCCCCCCCCCCcccccccccccccccc
Q 018586           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFD   89 (353)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C~k~F~   89 (353)
                      -++.+.|+.|++.|. ...|..|+..  |.  .+ .|. |++.+ .+..|..|+...  |   ++  ....|+.|++.|.
T Consensus       450 l~~H~~C~~Cgk~f~-~s~LekH~~~--~H--kpv~Cp-Cg~~~-~R~~L~~H~~th--C---p~--Kpi~C~fC~~~v~  515 (567)
T PLN03086        450 AKNHVHCEKCGQAFQ-QGEMEKHMKV--FH--EPLQCP-CGVVL-EKEQMVQHQAST--C---PL--RLITCRFCGDMVQ  515 (567)
T ss_pred             cccCccCCCCCCccc-hHHHHHHHHh--cC--CCccCC-CCCCc-chhHHHhhhhcc--C---CC--CceeCCCCCCccc
Confidence            356678999999996 6779999998  52  55 998 99755 668899997211  1   10  0113666776663


Q ss_pred             ----------CchhHHHHHHHhcCCCCCCcccCCcc
Q 018586           90 ----------SPSSLIKHKEACSLSAPVPFEKTLSN  115 (353)
Q Consensus        90 ----------~~s~L~~H~~~h~~~k~~~c~~~~~~  115 (353)
                                ..+.|+.|..++ +.+++.|..|+..
T Consensus       516 ~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~  550 (567)
T PLN03086        516 AGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRS  550 (567)
T ss_pred             cCccccchhhhhhhHHHHHHhc-CCcceEccccCCe
Confidence                      245899999886 8999999999644

>PHA00616 hypothetical protein

Probab=97.89  E-value=5.3e-06  Score=52.52  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=29.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      +|+.||+.|.+.+.|..|++.|++++++.|+.
T Consensus         3 qC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          3 QCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             ccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            59999999999999999999999999988864

>PHA00733 hypothetical protein

Probab=97.80  E-value=2.4e-05  Score=62.74  Aligned_cols=52  Identities=21%  Similarity=0.469  Sum_probs=46.2

Q ss_pred             CCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc
Q 018586            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~   63 (353)
                      .+.+.+||.|+.|++.|.....|..|++.  |.  .+ .|..|++.|.....|..|+
T Consensus        67 ~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~--h~--~~~~C~~CgK~F~~~~sL~~H~  119 (128)
T PHA00733         67 TSKAVSPYVCPLCLMPFSSSVSLKQHIRY--TE--HSKVCPVCGKEFRNTDSTLDHV  119 (128)
T ss_pred             ccCCCCCccCCCCCCcCCCHHHHHHHHhc--CC--cCccCCCCCCccCCHHHHHHHH
Confidence            33458899999999999999999999997  63  34 9999999999999999998

>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases

Probab=97.71  E-value=0.00021  Score=61.49  Aligned_cols=112  Identities=14%  Similarity=0.199  Sum_probs=70.6

Q ss_pred             CCceeeccCcccccc--CC-CCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHH
Q 018586          134 GPKAVAMDCEMVGGG--SN-GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~--~~-~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~  210 (353)
                      .-+.+++|+||++..  ++ ....| ..+++...+|.+.+-.                       ....+-.+++..|.+
T Consensus         2 ~l~~l~fDIEt~~~~gfp~~~~d~I-i~Is~~~~~g~~~~~~-----------------------~~~~~E~~lL~~F~~   57 (188)
T cd05781           2 DLKTLAFDIEVYSKYGTPNPRRDPI-IVISLATSNGDVEFIL-----------------------AEGLDDRKIIREFVK   57 (188)
T ss_pred             CceEEEEEEEecCCCCCCCCCCCCE-EEEEEEeCCCCEEEEE-----------------------ecCCCHHHHHHHHHH
Confidence            346889999999421  11 12233 3555555555532110                       124678899999999


Q ss_pred             HHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhc-------CcCC--C------------------CceeecccccCCc
Q 018586          211 ILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR-------MNYP--D------------------HMLRDTAKYRPLM  262 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~-------~~~~--~------------------~~~~Dt~~l~~~~  262 (353)
                      ++.+.+           ..+|+||| ..||+.+|.       +..+  +                  ...+|...+.+..
T Consensus        58 ~i~~~d-----------Pd~i~gyN~~~FDlpyl~~Ra~~~gi~~~~gr~~~~~~~~~~~~~~~i~Gr~~iDl~~~~~~~  126 (188)
T cd05781          58 YVKEYD-----------PDIIVGYNSNAFDWPYLVERARVLGVKLDVGRRGGSEPSTGVYGHYSITGRLNVDLYDFAEEI  126 (188)
T ss_pred             HHHHcC-----------CCEEEecCCCcCcHHHHHHHHHHhCCCcccccCCCcccccCCcceEeeeeEEEEEhHHHHHhh
Confidence            996543           35999999 558999987       1111  0                  1256776665544


Q ss_pred             ccCCCCCcHHHHHHHHhCCc
Q 018586          263 KTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       263 ~~~~~~~~L~~l~~~~~~~~  282 (353)
                      . ...+|+|+.+|+. ||..
T Consensus       127 ~-~l~~y~L~~Va~~-Lg~~  144 (188)
T cd05781         127 P-EVKVKTLENVAEY-LGVM  144 (188)
T ss_pred             C-CCCCCCHHHHHHH-HCCC
Confidence            3 3678999999986 4863

The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio

>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins

Probab=97.70  E-value=0.0003  Score=59.03  Aligned_cols=78  Identities=23%  Similarity=0.220  Sum_probs=59.2

Q ss_pred             CCcEEEecccHHHHHHhcC--cCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCC---------------CCC
Q 018586          227 KARLLVGHGLEHDLDSLRM--NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG---------------VHD  289 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~~--~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~---------------~H~  289 (353)
                      .+.+.|||++..|+..|..  +.....++|++..+..+.+. .+.+|+.+++.|+|..+...               -+-
T Consensus        66 ~~i~Kvg~~~k~D~~~L~~~~gi~~~~~~D~~~aa~ll~~~-~~~~L~~l~~~~lg~~l~K~~~~s~W~~rpLt~~qi~Y  144 (161)
T cd06129          66 PSIVKALHGIEGDLWKLLRDFGEKLQRLFDTTIAANLKGLP-ERWSLASLVEHFLGKTLDKSISCADWSYRPLTEDQKLY  144 (161)
T ss_pred             CCEEEEEeccHHHHHHHHHHcCCCcccHhHHHHHHHHhCCC-CCchHHHHHHHHhCCCCCccceeccCCCCCCCHHHHHH
Confidence            4457799999999999863  33334468999877766543 35699999999999876443               245


Q ss_pred             hHHHHHHHHHHHHHHH
Q 018586          290 PYEDCVSVMRLYKRFR  305 (353)
Q Consensus       290 Al~Da~~t~~l~~~~~  305 (353)
                      |..||..+..||.++.
T Consensus       145 Aa~Da~~l~~l~~~l~  160 (161)
T cd06129         145 AAADVYALLIIYTKLR  160 (161)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7789999999999875

The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome-

>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A

Probab=97.63  E-value=7.4e-05  Score=62.73  Aligned_cols=74  Identities=22%  Similarity=0.188  Sum_probs=38.4

Q ss_pred             CCcEEEecc-cHHHHHHhc-----CcCC-CCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHH
Q 018586          227 KARLLVGHG-LEHDLDSLR-----MNYP-DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMR  299 (353)
Q Consensus       227 ~~~~lvgh~-~~~D~~~l~-----~~~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~  299 (353)
                      +...+|+|| ..||+.+|+     ...| ....+|+....+....  .+++|+.++..+ |+...    .--.+-.....
T Consensus        56 ~~~~iv~yng~~FD~p~L~~~~~~~~~~~~~~~iDl~~~~~~~~~--~~~~Lk~ve~~l-g~~~~----~~~~~G~~~~~  128 (164)
T PF13482_consen   56 EADNIVTYNGKNFDIPFLKRRAKRYGLPPPFNHIDLLKIIKKHFL--ESYSLKNVEKFL-GIERR----DDDISGSESVK  128 (164)
T ss_dssp             TT--EEESSTTTTHHHHHHHHH-HHHH--GGGEEEHHHHHT-TTS--CCTT--SHHH----------------HHHHHHH
T ss_pred             cCCeEEEEeCcccCHHHHHHHHHHcCCCcccchhhHHHHHHhccC--CCCCHHHHhhhc-ccccc----cCCCCHHHHHH
Confidence            556889988 688999999     2223 4668999887754433  678999999987 77732    12244445566


Q ss_pred             HHHHHHhc
Q 018586          300 LYKRFRRQ  307 (353)
Q Consensus       300 l~~~~~~~  307 (353)
                      +|..+...
T Consensus       129 ~~~~~~~~  136 (164)
T PF13482_consen  129 LYKEYLET  136 (164)
T ss_dssp             HHH---TT
T ss_pred             HHHHHHhc
Confidence            66665433

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.60  E-value=3e-05  Score=43.83  Aligned_cols=23  Identities=13%  Similarity=0.075  Sum_probs=20.4

Q ss_pred             hHHHHHHHhcCCCCCCcccCCcc
Q 018586           93 SLIKHKEACSLSAPVPFEKTLSN  115 (353)
Q Consensus        93 ~L~~H~~~h~~~k~~~c~~~~~~  115 (353)
                      +|.+|+++|++++||+|+.|...
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~   23 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKS   23 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEE
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCe
Confidence            58899999999999999999543

...

>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases

Probab=97.56  E-value=0.0019  Score=56.49  Aligned_cols=73  Identities=23%  Similarity=0.392  Sum_probs=52.0

Q ss_pred             CCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-------CcCC---------------------
Q 018586          198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYP---------------------  248 (353)
Q Consensus       198 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~---------------------  248 (353)
                      ..+..+++..|.+++.+.++           .+|||||+ .||+.+|.       +..+                     
T Consensus        55 ~~~E~~lL~~f~~~i~~~dP-----------dii~g~N~~~FD~pyl~~R~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  123 (207)
T cd05785          55 DAAEKELLEELVAIIRERDP-----------DVIEGHNIFRFDLPYLRRRCRRHGVPLAIGRDGSIPRQRPSRFRFAERL  123 (207)
T ss_pred             CCCHHHHHHHHHHHHHHhCC-----------CEEeccCCcccCHHHHHHHHHHhCCCcccccCCCcceEeeccccccccc
Confidence            57889999999999965432           59999998 89999987       1111                     


Q ss_pred             ---------CCceeecccccCCc---ccCCCCCcHHHHHHHHhCCc
Q 018586          249 ---------DHMLRDTAKYRPLM---KTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       249 ---------~~~~~Dt~~l~~~~---~~~~~~~~L~~l~~~~~~~~  282 (353)
                               ...++|+..+.+..   .....+|+|+.+|+.+ |+.
T Consensus       124 ~~~~~~~i~Gr~~iDl~~~~~~~~~~~~~l~sysL~~Va~~~-g~~  168 (207)
T cd05785         124 IDYPRYDIPGRHVIDTYFLVQLFDVSSRDLPSYGLKAVAKHF-GLA  168 (207)
T ss_pred             cccceEEecCEEEEEcHHHHHhhcccccCCCCCCHHHHHHHh-ccc
Confidence                     01226777655532   2245689999999988 654

A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.

>PRK10829 ribonuclease D; Provisional

Probab=97.50  E-value=0.00078  Score=64.04  Aligned_cols=83  Identities=12%  Similarity=0.117  Sum_probs=63.7

Q ss_pred             CCcEEEecccHHHHHHhc--CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCC---------------CC
Q 018586          227 KARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV---------------HD  289 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~---------------H~  289 (353)
                      .+.+-|+|++.+|+.+|.  ++.....++||+..+..+ +...+.+|+.|++.++|+.+..+.               +-
T Consensus        73 ~~ivKV~H~~~~Dl~~l~~~~g~~p~~~fDTqiaa~~l-g~~~~~gl~~Lv~~~lgv~ldK~~~~sDW~~RPLs~~ql~Y  151 (373)
T PRK10829         73 PQVTKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFC-GRPLSCGFASMVEEYTGVTLDKSESRTDWLARPLSERQCEY  151 (373)
T ss_pred             CCeEEEEeChHhHHHHHHHHcCCCcCCeeeHHHHHHHc-CCCccccHHHHHHHHhCCccCcccccCCCCCCCCCHHHHHH
Confidence            445668999999999985  334445689998777554 333468999999999999877651               33


Q ss_pred             hHHHHHHHHHHHHHHHhchhh
Q 018586          290 PYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       290 Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      |..|+.....||..+..+..+
T Consensus       152 Aa~Dv~~L~~l~~~L~~~L~~  172 (373)
T PRK10829        152 AAADVFYLLPIAAKLMAETEA  172 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999887654

>KOG0304 consensus mRNA deadenylase subunit [RNA processing and modification]

Probab=97.48  E-value=0.0005  Score=58.83  Aligned_cols=158  Identities=15%  Similarity=0.135  Sum_probs=100.7

Q ss_pred             CceeeccCcccccc-----------------------CCCCccceeEEeeecCCCCe------EEeeecc---CC-CCcc
Q 018586          135 PKAVAMDCEMVGGG-----------------------SNGTLDLCARVCLVDEDENV------IFHTYVQ---PQ-LPVT  181 (353)
Q Consensus       135 ~~~~~~D~Ettg~~-----------------------~~~~~~il~~v~ivd~~g~~------~~~~lv~---P~-~~i~  181 (353)
                      -++|++|+|.-|.=                       .-..|++  ...+.|.+|+.      +|+--.+   +. ....
T Consensus        24 y~~IamDTEFPGvv~rp~~~f~s~~d~~Y~~lk~NVd~lklIQl--GlTlsd~~Gn~p~~g~~tWqfNF~dF~~~~D~~a  101 (239)
T KOG0304|consen   24 YPYIAMDTEFPGVVARPIGTFRSSDDYHYQTLKCNVDNLKLIQL--GLTLSDEKGNLPDCGTDTWQFNFSDFNLEKDMYA  101 (239)
T ss_pred             CCeeEecCcCCceeeecCccccCChHHHHHHHHhchhhhhhhhe--eeeeeccCCCCCCCCCceeEEecccCCchhhccc
Confidence            45899999988731                       1122333  56677777765      2333222   22 2222


Q ss_pred             cccc---ccCCCCHhhhc-CCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-----Cc------
Q 018586          182 NYRY---EVTGLTEEDIK-NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-----MN------  246 (353)
Q Consensus       182 ~~~~---~~~GIt~e~l~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-----~~------  246 (353)
                      +...   +=+||.-+... .+....+..+.+..-..-          -+++..+|..+..+|+..|-     -.      
T Consensus       102 ~~SIElLr~~Gidf~K~~e~GI~~~~F~ellm~sg~v----------~~~~V~WvTFhs~YDfgYLlK~Lt~~~LP~~~~  171 (239)
T KOG0304|consen  102 QDSIELLRRSGIDFEKHREEGIDIEEFAELLMTSGLV----------LDENVTWVTFHSGYDFGYLLKILTGKPLPETEE  171 (239)
T ss_pred             hhhHHHHHHcCcCHHHHHHcCCCHHHHHHHHHHhhhh----------ccCceEEEEeeccchHHHHHHHHcCCCCcchHH
Confidence            2222   33788866654 455555444444433210          13678999999899999876     11      


Q ss_pred             ---------CCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhc
Q 018586          247 ---------YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       247 ---------~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~  307 (353)
                               +|.  +.|+..+++.......+.+|+.+|+.+ ++.-.+-+|.|-.|+..|+..|.++.+.
T Consensus       172 eF~~~v~~~fp~--vYDiK~l~~~c~~~~l~~GL~~lA~~L-~~~RvG~~HqAGSDSlLT~~~F~kl~~~  238 (239)
T KOG0304|consen  172 EFFEIVRQLFPF--VYDVKYLMKFCEGLSLKGGLQRLADLL-GLKRVGIAHQAGSDSLLTARVFFKLKEL  238 (239)
T ss_pred             HHHHHHHHHcch--hhhHHHHHHhhhhhhhhcCHHHHHHHh-CCCeeecccccCcHHHHHHHHHHHHHhc
Confidence                     233  557777776665555678999999998 9995444999999999999999998764

>PHA00616 hypothetical protein

Probab=97.47  E-value=5.6e-05  Score=47.88  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=28.9

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ||+|..||+.|..++++.+|++.  |.++.+ .|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~--~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS--VHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH--hcCCCccceeE
Confidence            68999999999999999999998  777777 6643

>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase

Probab=97.46  E-value=0.0014  Score=57.15  Aligned_cols=74  Identities=18%  Similarity=0.134  Sum_probs=50.8

Q ss_pred             CCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhc-----CcCC------C------------Ccee
Q 018586          198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR-----MNYP------D------------HMLR  253 (353)
Q Consensus       198 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~-----~~~~------~------------~~~~  253 (353)
                      ..+-.+++.+|.+++.+.+           ..+|+||| ..||+.+|.     .+.+      +            ...+
T Consensus        70 ~~~E~~lL~~f~~~i~~~~-----------Pd~i~gyN~~~FD~pyl~~R~~~~~~~~~~~~g~~~~~~~~~~~~gr~~i  138 (204)
T cd05779          70 EPDEKALLQRFFEHIREVK-----------PHIIVTYNGDFFDWPFVEARAAIHGLSMEEEIGFRKDSEGEYKSRYIIHM  138 (204)
T ss_pred             CCCHHHHHHHHHHHHHHhC-----------CCEEEecCccccCHHHHHHHHHHhCCCchhhhCeEecCCCeEEeccEEEE
Confidence            4678899999999995442           25999999 568999987     1111      0            1145


Q ss_pred             ecccccCCc-ccCCCCCcHHHHHHHHhCCc
Q 018586          254 DTAKYRPLM-KTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       254 Dt~~l~~~~-~~~~~~~~L~~l~~~~~~~~  282 (353)
                      |...+.+.. ......++|+.+|+.+||..
T Consensus       139 Dl~~~~~~~~~l~~~sysLd~Va~~~Lg~~  168 (204)
T cd05779         139 DCFRWVKRDSYLPQGSQGLKAVTKAKLGYD  168 (204)
T ss_pred             EhHHHHHHhhcCCCCCccHHHHHHHHhCCC
Confidence            666555432 22335899999999988875

The 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon. DNA polymerase epsilon is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and delta are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase epsilon plays a role in elongating the leading strand during DNA replication. It is also involved in DNA repair. The catalytic subunit contains both polymerase and 3'-5' exonuclease activities. The N-terminal exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. DNA polymerase epsilon also carries a unique

>cd00007 35EXOc 3'-5' exonuclease

Probab=97.42  E-value=0.00038  Score=57.20  Aligned_cols=93  Identities=28%  Similarity=0.391  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc---CCCCceeecccccCCcccCCCCCcHHHHHHHH
Q 018586          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN---YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTY  278 (353)
Q Consensus       202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~---~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~  278 (353)
                      .++.+.+.+++            .+.+..+||||+.+|+.+|...   .+ ..++||+..+..+.|....++|+.+++.|
T Consensus        40 ~~~~~~l~~~l------------~~~~~~~v~~~~k~d~~~L~~~~~~~~-~~~~D~~~~ayll~~~~~~~~l~~l~~~~  106 (155)
T cd00007          40 EEDLEALKELL------------EDEDITKVGHDAKFDLVVLARDGIELP-GNIFDTMLAAYLLNPGEGSHSLDDLAKEY  106 (155)
T ss_pred             HHHHHHHHHHH------------cCCCCcEEeccHHHHHHHHHHCCCCCC-CCcccHHHHHHHhCCCCCcCCHHHHHHHH
Confidence            56777788998            2244579999999999999722   22 34789999998888865357999999999


Q ss_pred             hCCcCCC-C-----------CC-------ChHHHHHHHHHHHHHHHhc
Q 018586          279 LGYDIQS-G-----------VH-------DPYEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       279 ~~~~~~~-~-----------~H-------~Al~Da~~t~~l~~~~~~~  307 (353)
                      ++..+.. .           ..       -|..||.++.+|+..+..+
T Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~da~~~~~l~~~l~~~  154 (155)
T cd00007         107 LGIELDKDEQIYGKGAKTFARPLSEELLEYAAEDADALLRLYEKLLEE  154 (155)
T ss_pred             cCCCCccHHHHhcCCCCccccCCHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            8776321 0           00       1455666777777666543

The 35EXOc domain is responsible for the 3'-5' exonuclease proofreading activity of prokaryotic DNA polymerase I (pol I) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli pol I. 35EXOc is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D).

>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases

Probab=97.41  E-value=0.0013  Score=56.85  Aligned_cols=120  Identities=18%  Similarity=0.265  Sum_probs=71.9

Q ss_pred             CCceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHh
Q 018586          134 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  213 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~  213 (353)
                      .-++++||+|+.+.+     ++ -.+...+...+.++-. -.+. +.       .|   ..+.--++-.+++..|.+++.
T Consensus         2 ~l~~~~fDIE~~~~~-----~i-~~i~~~~~~~~~i~~~-~~~~-~~-------~~---~~v~~~~~E~~lL~~f~~~i~   63 (193)
T cd05784           2 KLKVVSLDIETSMDG-----EL-YSIGLYGEGQERVLMV-GDPE-DD-------AP---DNIEWFADEKSLLLALIAWFA   63 (193)
T ss_pred             CccEEEEEeecCCCC-----CE-EEEEeecCCCCEEEEE-CCCC-CC-------CC---CEEEEECCHHHHHHHHHHHHH
Confidence            346899999998753     33 2444433333322211 0111 10       01   123334678889999999995


Q ss_pred             cCCCCcccccCCCCCcEEEeccc-HHHHHHhc-------CcC------------------------CCCceeecccccCC
Q 018586          214 NGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNY------------------------PDHMLRDTAKYRPL  261 (353)
Q Consensus       214 ~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~------------------------~~~~~~Dt~~l~~~  261 (353)
                      +.++           .+|+|||+ .||+.+|.       +..                        +...++|+..+.+.
T Consensus        64 ~~dP-----------Dvi~g~N~~~FD~~yl~~R~~~~~i~~~~gR~~~~~~~~~~g~~~~~~~~i~GR~~~D~~~~~k~  132 (193)
T cd05784          64 QYDP-----------DIIIGWNVINFDLRLLQRRAEAHGLPLRLGRGGSPLNWRQSGKPGQGFLSLPGRVVLDGIDALKT  132 (193)
T ss_pred             hhCC-----------CEEEECCCcCcCHHHHHHHHHHhCCCcccccCCCccccccCCcCCcceEEEeeEEEEEhHHHHHH
Confidence            5432           59999995 56999987       111                        01225676665543


Q ss_pred             cccCCCCCcHHHHHHHHhCCc
Q 018586          262 MKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       262 ~~~~~~~~~L~~l~~~~~~~~  282 (353)
                      ......+|+|+++|+.+||..
T Consensus       133 ~~~kl~sy~L~~Va~~~Lg~~  153 (193)
T cd05784         133 ATYHFESFSLENVAQELLGEG  153 (193)
T ss_pred             ccCCCCcCCHHHHHHHHhCCC
Confidence            223577999999999998875

The 3'-5' exonuclease domain of Escherichia coli DNA polymerase II (Pol II) and similar bacterial proteins. Pol II is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain has a fundamental role in the proofreading activity of polII. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Pol II is involved in a variety of cellular activities, such as the repair of DNA damaged

>TIGR01388 rnd ribonuclease D

Probab=97.36  E-value=0.002  Score=61.44  Aligned_cols=82  Identities=18%  Similarity=0.250  Sum_probs=61.8

Q ss_pred             CCcEEEecccHHHHHHhc---CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCC------CCC--------
Q 018586          227 KARLLVGHGLEHDLDSLR---MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG------VHD--------  289 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~---~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~------~H~--------  289 (353)
                      .+.+.|+|++.+|+.+|.   ...| ..++||+..+..+.+. .+.+|+.|++.|+|+.+..+      ..+        
T Consensus        69 ~~i~KV~h~~k~Dl~~L~~~~~~~~-~~~fDtqlAa~lL~~~-~~~~l~~Lv~~~Lg~~l~K~~~~sdW~~rPL~~~q~~  146 (367)
T TIGR01388        69 ESVVKVLHAASEDLEVFLNLFGELP-QPLFDTQIAAAFCGFG-MSMGYAKLVQEVLGVELDKSESRTDWLARPLTDAQLE  146 (367)
T ss_pred             CCceEEEeecHHHHHHHHHHhCCCC-CCcccHHHHHHHhCCC-CCccHHHHHHHHcCCCCCcccccccCCCCCCCHHHHH
Confidence            456789999999999987   2233 4578998877666443 34699999999999887543      122        


Q ss_pred             -hHHHHHHHHHHHHHHHhchhh
Q 018586          290 -PYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       290 -Al~Da~~t~~l~~~~~~~~~~  310 (353)
                       |..||.....||..+..+..+
T Consensus       147 YAa~Dv~~L~~L~~~L~~~L~~  168 (367)
T TIGR01388       147 YAAADVTYLLPLYAKLMERLEE  168 (367)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence             778999999999999877654

This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown.

>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins

Probab=97.35  E-value=0.00069  Score=58.80  Aligned_cols=138  Identities=22%  Similarity=0.216  Sum_probs=86.3

Q ss_pred             CCceeeccCccccccCCCCccceeEEeeecCCCCe-EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHH
Q 018586          134 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENV-IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~-~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~  212 (353)
                      ..+++++|+|..+.+..+.+.   -+.+....+.+ +||.+-.+.                        ......+.+++
T Consensus         9 ~~~~i~~D~E~~~~~~~~~~~---LiQia~~~~~v~l~D~~~~~~------------------------~~~~~~L~~iL   61 (197)
T cd06148           9 KQKVIGLDCEGVNLGRKGKLC---LVQIATRTGQIYLFDILKLGS------------------------IVFINGLKDIL   61 (197)
T ss_pred             hCCEEEEEcccccCCCCCCEE---EEEEeeCCCcEEEEEhhhccc------------------------hhHHHHHHHHh
Confidence            457999999998776544333   33332231332 344332111                        01224455667


Q ss_pred             hcCCCCcccccCCCCCcEEEecccHHHHHHhc--CcCCCCceeecccccCCcccCC-------CCCcHHHHHHHHhCCcC
Q 018586          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNL-------VSHSLKYLTRTYLGYDI  283 (353)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~-------~~~~L~~l~~~~~~~~~  283 (353)
                                  .+.+.+.|+|++.+|+.+|.  .+.....++||+..+..+.+..       ...+|+.+++.|+|+++
T Consensus        62 ------------e~~~i~Kv~h~~k~D~~~L~~~~gi~~~~~fDt~iA~~lL~~~~~~~~~~~~~~~L~~l~~~~l~~~~  129 (197)
T cd06148          62 ------------ESKKILKVIHDCRRDSDALYHQYGIKLNNVFDTQVADALLQEQETGGFNPDRVISLVQLLDKYLYISI  129 (197)
T ss_pred             ------------cCCCccEEEEechhHHHHHHHhcCccccceeeHHHHHHHHHHHhcCCccccccccHHHHHHHhhCCCh
Confidence                        22445679999999999983  3332234689987665554422       13589999999999876


Q ss_pred             CC--------------CC---------CChHHHHHHHHHHHHHHHhchhh
Q 018586          284 QS--------------GV---------HDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       284 ~~--------------~~---------H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      ..              ..         .-|..||..+..||..+......
T Consensus       130 ~k~~~~~~~~~~~~s~W~~RPLt~~ql~YAa~Dv~~Ll~l~~~l~~~l~~  179 (197)
T cd06148         130 SLKEDVKKLMREDPKFWALRPLTEDMIRYAALDVLCLLPLYYAMLDALIS  179 (197)
T ss_pred             HHHHHHHHHHhcCchhhhcCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence            31              11         33677999999999999888655

The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation of this subfamily throughout eukaryotes suggests that its members may be part of ancient RNA processing complexes that are likely to participate in the regulated processing of specific mRNAs. Some members of this subfamily do not have a completely conserved YX(3)D pattern at the ExoIII motif.

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=97.31  E-value=0.00017  Score=67.24  Aligned_cols=48  Identities=27%  Similarity=0.454  Sum_probs=40.6

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCC--------CCC--------------------------CccccCcccCCChHHH
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHS--------VHQ--------------------------PKCAVCQKLSKSFESL   59 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~--------~~~--------------------------~~C~~C~~~f~~~~~l   59 (353)
                      -|+|++|+|.|+...+|..|.|+  |-        +.+                          +.|+.|++.|.+..-|
T Consensus       295 EYrCPEC~KVFsCPANLASHRRW--HKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYL  372 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRW--HKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYL  372 (500)
T ss_pred             eecCCcccccccCchhhhhhhcc--cCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHH
Confidence            49999999999999999999999  61        111                          1699999999999999


Q ss_pred             Hhcc
Q 018586           60 REHL   63 (353)
Q Consensus        60 ~~H~   63 (353)
                      +.|+
T Consensus       373 rKHq  376 (500)
T KOG3993|consen  373 RKHQ  376 (500)
T ss_pred             HHhH
Confidence            9995

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.29  E-value=0.00014  Score=41.04  Aligned_cols=24  Identities=38%  Similarity=0.724  Sum_probs=16.5

Q ss_pred             HHHHHHhhhcCCCCCC-ccccCcccCC
Q 018586           29 HLIEHMKISYHSVHQP-KCAVCQKLSK   54 (353)
Q Consensus        29 ~l~~H~~~~~h~~~~~-~C~~C~~~f~   54 (353)
                      +|.+|+++  |+++++ .|+.|++.|.
T Consensus         1 ~l~~H~~~--H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRT--HTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHH--HSSSSSEEESSSSEEES
T ss_pred             CHHHHhhh--cCCCCCCCCCCCcCeeC
Confidence            36677777  777777 7777776664

...

>PHA00732 hypothetical protein

Probab=97.28  E-value=0.00017  Score=52.59  Aligned_cols=44  Identities=30%  Similarity=0.519  Sum_probs=32.5

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCCCCCccccCcccCCChHHHHhcc
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL   63 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~~~f~~~~~l~~H~   63 (353)
                      ||.|+.|++.|.+.+.|..|++.+ |.+.  .|..|++.|.   ++..|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~-H~~~--~C~~CgKsF~---~l~~H~   44 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRN-HTLT--KCPVCNKSYR---RLNQHF   44 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcc-cCCC--ccCCCCCEeC---Chhhhh
Confidence            688999999999999999998731 4432  6777877776   355665

>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis]

Probab=97.27  E-value=0.0019  Score=60.29  Aligned_cols=137  Identities=22%  Similarity=0.273  Sum_probs=91.3

Q ss_pred             CCCceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHH
Q 018586          133 RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~  212 (353)
                      .+..++++|+|+.+...- .-. ++-|-|.+.++.    .+|.|-.+               ..+.++|..       ++
T Consensus        15 ~~~~~iAiDTEf~r~~t~-~p~-LcLIQi~~~e~~----~lIdpl~~---------------~~d~~~l~~-------Ll   66 (361)
T COG0349          15 RGSKAIAIDTEFMRLRTY-YPR-LCLIQISDGEGA----SLIDPLAG---------------ILDLPPLVA-------LL   66 (361)
T ss_pred             cCCCceEEeccccccccc-CCc-eEEEEEecCCCc----eEeccccc---------------ccccchHHH-------Hh
Confidence            345689999999997422 212 255666445552    33333321               112333333       33


Q ss_pred             hcCCCCcccccCCCCCcEEEecccHHHHHHhc--CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCC---
Q 018586          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV---  287 (353)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~---  287 (353)
                                  .+.+.+=|=|++.||+.+|.  ++.-..+++||...++..-... +++|++|++.++|+.|..++   
T Consensus        67 ------------~d~~v~KIfHaa~~DL~~l~~~~g~~p~plfdTqiAa~l~g~~~-~~gl~~Lv~~ll~v~ldK~~q~S  133 (361)
T COG0349          67 ------------ADPNVVKIFHAARFDLEVLLNLFGLLPTPLFDTQIAAKLAGFGT-SHGLADLVEELLGVELDKSEQRS  133 (361)
T ss_pred             ------------cCCceeeeeccccccHHHHHHhcCCCCCchhHHHHHHHHhCCcc-cccHHHHHHHHhCCccccccccc
Confidence                        12445668899999999998  3433456899988776553333 89999999999999998872   


Q ss_pred             ---CC---------hHHHHHHHHHHHHHHHhchhh
Q 018586          288 ---HD---------PYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       288 ---H~---------Al~Da~~t~~l~~~~~~~~~~  310 (353)
                         ++         |..|+.....||.++.+...+
T Consensus       134 DW~~RPLs~~Ql~YAa~DV~yL~~l~~~L~~~L~~  168 (361)
T COG0349         134 DWLARPLSEAQLEYAAADVEYLLPLYDKLTEELAR  168 (361)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               33         577999999999999887655

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.11  E-value=0.00027  Score=38.51  Aligned_cols=22  Identities=32%  Similarity=0.594  Sum_probs=20.1

Q ss_pred             ccccccccccCchhHHHHHHHh
Q 018586           80 GCNLCMNIFDSPSSLIKHKEAC  101 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h  101 (353)
                      .|+.|+++|...+.|..|++.|
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    2 KCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCccCCHHHHHHHHhHC
Confidence            4899999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases

Probab=97.11  E-value=0.013  Score=51.01  Aligned_cols=75  Identities=16%  Similarity=0.186  Sum_probs=51.4

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhc-----CcCC----------------CCce
Q 018586          195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR-----MNYP----------------DHML  252 (353)
Q Consensus       195 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~-----~~~~----------------~~~~  252 (353)
                      +..-.+-.+++.+|.+++.+            . .+||||| ..||+.+|.     .+.+                ....
T Consensus        67 v~~~~~E~~lL~~F~~~i~~------------~-~~iig~N~~~FDlpyl~~R~~~~gi~~~~~~~~~~~~~~~~~g~~~  133 (204)
T cd05783          67 VEFFDSEKELIREAFKIISE------------Y-PIVLTFNGDNFDLPYLYNRALKLGIPKEEIPIYLKRDYATLKHGIH  133 (204)
T ss_pred             EEecCCHHHHHHHHHHHHhc------------C-CEEEEeCCCCcCHHHHHHHHHHhCCChhhCceeecCCceeccCcEE
Confidence            33446789999999999932            2 4899999 568999987     2222                1334


Q ss_pred             eecccccCC-c-----c-cCCCCCcHHHHHHHHhCCc
Q 018586          253 RDTAKYRPL-M-----K-TNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       253 ~Dt~~l~~~-~-----~-~~~~~~~L~~l~~~~~~~~  282 (353)
                      +|....... .     + ....+++|+.+|+.+||..
T Consensus       134 iDl~~~~~~~~~~~~~~~~~~~~~~L~~Va~~~lg~~  170 (204)
T cd05783         134 IDLYKFFSNRAIQVYAFGNKYREYTLDAVAKALLGEG  170 (204)
T ss_pred             eECHHHhhccchhhhhhccccccCcHHHHHHHhcCCC
Confidence            666554332 1     1 1346899999999998876

The 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal proteins. B1 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B1displays thermostable polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family-B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Family-B DNA polymerases from thermophilic archaea are uniq

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=97.06  E-value=0.00015  Score=67.61  Aligned_cols=88  Identities=20%  Similarity=0.277  Sum_probs=64.9

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCCCC-CccccCcccCCChHHHHhccCCCCCCCCCCcccc---------------
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQ-PKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFS---------------   77 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~-~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~---------------   77 (353)
                      -|.|..|...|...-.|.+|.=.  ..-.. .+|..|++.|+-..+|..|.++.++-.+=++.-.               
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~--RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~e  344 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCP--RIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQE  344 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCC--eeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhh
Confidence            38899999999999999998732  22222 3999999999999999999844433211111000               


Q ss_pred             -----------ccccccccccccCchhHHHHHHHhcC
Q 018586           78 -----------DRGCNLCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        78 -----------~~~C~~C~k~F~~~s~L~~H~~~h~~  103 (353)
                                 -..|..|+|+|.....|+.|+-+|+.
T Consensus       345 a~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  345 AERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             ccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence                       01399999999999999999999873

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.00  E-value=0.0005  Score=37.42  Aligned_cols=22  Identities=41%  Similarity=0.689  Sum_probs=20.6

Q ss_pred             eeeccccccccChHHHHHHHhh
Q 018586           15 HKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      |.|+.|++.|..++.|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            7899999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PLN03086 PRLI-interacting factor K; Provisional

Probab=96.90  E-value=0.0007  Score=66.95  Aligned_cols=77  Identities=17%  Similarity=0.372  Sum_probs=55.2

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCC----------hHHHHhccCCCCCCCCCCcccccccc
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKS----------FESLREHLTGPLSKAHCSGIFSDRGC   81 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~----------~~~l~~H~~~~~~c~~Cgk~f~~~~C   81 (353)
                      +|+.|+ ||+.+ .+..|..|+.+  |..+++ .|..|+..+..          .+.|..|...      ||..-  ..|
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~t--hCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~------CG~rt--~~C  544 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQAS--TCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI------CGSRT--APC  544 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhhc--cCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh------cCCcc--eEc
Confidence            789999 99765 56889999998  999999 99999998852          3578888611      11111  147


Q ss_pred             ccccccccCchhHHHHHHHhc
Q 018586           82 NLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      ..||+.+..+ .+..|+...+
T Consensus       545 ~~Cgk~Vrlr-dm~~H~~~~h  564 (567)
T PLN03086        545 DSCGRSVMLK-EMDIHQIAVH  564 (567)
T ss_pred             cccCCeeeeh-hHHHHHHHhh
Confidence            7788777666 4667776543

>smart00474 35EXOc 3'-5' exonuclease

Probab=96.90  E-value=0.0042  Score=51.94  Aligned_cols=89  Identities=24%  Similarity=0.394  Sum_probs=63.8

Q ss_pred             HHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc---CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCC
Q 018586          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR---MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGY  281 (353)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~  281 (353)
                      ...+.+++.            +.+...||||+.+|+.+|.   +..+.  ++||+..+..+.|....++|+.++..|+|.
T Consensus        64 ~~~l~~~l~------------~~~~~kv~~d~k~~~~~L~~~gi~~~~--~~D~~laayll~p~~~~~~l~~l~~~~l~~  129 (172)
T smart00474       64 LEILKDLLE------------DETITKVGHNAKFDLHVLARFGIELEN--IFDTMLAAYLLLGGPSKHGLATLLKEYLGV  129 (172)
T ss_pred             HHHHHHHhc------------CCCceEEEechHHHHHHHHHCCCcccc--hhHHHHHHHHHcCCCCcCCHHHHHHHHhCC
Confidence            455777772            2456799999999999996   22322  489998888787766546999999999888


Q ss_pred             cCCCC--------CC-------ChHHHHHHHHHHHHHHHhc
Q 018586          282 DIQSG--------VH-------DPYEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       282 ~~~~~--------~H-------~Al~Da~~t~~l~~~~~~~  307 (353)
                      .+...        ..       -|..||.++.+|+..+.++
T Consensus       130 ~~~~~~~~~~~~~~~l~~~~~~ya~~~a~~~~~L~~~l~~~  170 (172)
T smart00474      130 ELDKEEQKSDWGARPLSEEQLQYAAEDADALLRLYEKLEKE  170 (172)
T ss_pred             CCCcccCccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            74310        00       1566788888888777665

3\' -5' exonuclease proofreading domain present in DNA polymerase I, Werner syndrome helicase, RNase D and other enzymes

>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins

Probab=96.79  E-value=0.0057  Score=53.07  Aligned_cols=94  Identities=19%  Similarity=0.224  Sum_probs=65.9

Q ss_pred             ChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhc-------CcCCC-----------------Cceee
Q 018586          200 PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR-------MNYPD-----------------HMLRD  254 (353)
Q Consensus       200 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~-------~~~~~-----------------~~~~D  254 (353)
                      ..++++.+|.+++..            ....||+|| -.||+.+|.       +..|.                 ...+|
T Consensus        36 ~E~~lL~~F~~~~~~------------~~p~LVs~NG~~FDlP~L~~Ral~~gi~~p~~~~~~~k~WenY~~Ry~~~H~D  103 (209)
T PF10108_consen   36 DEKELLQDFFDLVEK------------YNPQLVSFNGRGFDLPVLCRRALIHGISAPRYLDIGNKPWENYRNRYSERHLD  103 (209)
T ss_pred             CHHHHHHHHHHHHHh------------CCCeEEecCCccCCHHHHHHHHHHhCCCCchhhhcCCCCccccccccCccccc
Confidence            378899999999942            345799999 789999988       22221                 23467


Q ss_pred             cccccCCcccCCCCCcHHHHHHHHhCCcCCCCCCCh------------------HHHHHHHHHHHHHHHhc
Q 018586          255 TAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDP------------------YEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       255 t~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~A------------------l~Da~~t~~l~~~~~~~  307 (353)
                      ++.+.... +.....+|+.||..+ |++-..+-.-+                  ..|+++|+.||.++.--
T Consensus       104 Lmd~l~~~-g~~~~~sLd~la~~l-giPgK~~idGs~V~~~y~~g~i~~I~~YCe~DVl~T~~lylR~~~~  172 (209)
T PF10108_consen  104 LMDLLSFY-GAKARTSLDELAALL-GIPGKDDIDGSQVAELYQEGDIDEIREYCEKDVLNTYLLYLRFELL  172 (209)
T ss_pred             HHHHHhcc-CccccCCHHHHHHHc-CCCCCCCCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77654332 244578999999988 99844332211                  34999999999998754

>PF04857 CAF1: CAF1 family ribonuclease; InterPro: IPR006941 CAF1 is an RNase of the DEDD superfamily, and a subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation

Probab=96.77  E-value=0.0038  Score=56.73  Aligned_cols=72  Identities=22%  Similarity=0.170  Sum_probs=55.5

Q ss_pred             CCcEEEecccHHHHHHhc-------------------CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcC----
Q 018586          227 KARLLVGHGLEHDLDSLR-------------------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDI----  283 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~-------------------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~----  283 (353)
                      ...+|||||.-+|+.+|-                   .-+|.  ++||..++....  ....+|+.|++.+ +...    
T Consensus       148 ~~~p~Vghn~~~Dl~~l~~~f~~~LP~t~~eF~~~~~~~FP~--i~DtK~la~~~~--~~~~~L~~l~~~l-~~~~~~~~  222 (262)
T PF04857_consen  148 SKKPIVGHNGLYDLMYLYKKFIGPLPETLEEFKELLRELFPR--IYDTKYLAEECP--GKSTSLQELAEEL-GIRRNPSS  222 (262)
T ss_dssp             C-SEEEESSTHHHHHHHHHHHTTS--SSHHHHHHHHHHHSSS--EEEHHHHHTSTT--TS-SSHHHHHHHT-TSTT----
T ss_pred             cCCcEEEeChHhHHHHHHHHhcCCCCCCHHHHHHHHHHHCcc--cccHHHHHHhcc--ccccCHHHHHHHh-CCCccccc
Confidence            458999999999999976                   11565  889998887664  3467899999988 6653    


Q ss_pred             -------------------CCC-CCChHHHHHHHHHHHHH
Q 018586          284 -------------------QSG-VHDPYEDCVSVMRLYKR  303 (353)
Q Consensus       284 -------------------~~~-~H~Al~Da~~t~~l~~~  303 (353)
                                         .+. .|.|-.||.+|+.+|.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~HeAGyDA~mTg~~F~~  262 (262)
T PF04857_consen  223 ISSPEGFPSYDEEKNNFPMFGEKAHEAGYDAYMTGCVFIK  262 (262)
T ss_dssp             EEE-TTS-------------SS-TTSHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccCCCCCCCcchHHHHHHHHHcC
Confidence                               233 89999999999999864

The major pathways of mRNA turnover in eukaryotes initiate with shortening of the poly(A) tail. CAF1 P39008 from SWISSPROT encodes a critical component of the major cytoplasmic deadenylase in yeast. Caf1p is required for normal mRNA deadenylation in vivo and localises to the cytoplasm. Caf1p copurifies with a Ccr4p-dependent poly(A)-specific exonuclease activity. Some members of this family contain a single-stranded nucleic acid binding domain, R3H.; GO: 0005634 nucleus; PDB: 3D45_B 1UG8_A 2D5R_A 2A1S_C 2A1R_A 2FC6_A 1UOC_A 3G10_A 2P51_A 3G0Z_A.

>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase

Probab=96.68  E-value=0.013  Score=52.08  Aligned_cols=129  Identities=13%  Similarity=0.174  Sum_probs=73.2

Q ss_pred             ccCCCceeeccCcccccc---CCC-CccceeEEeee-cCCCC--eEEee-ec-cCCCCccccccccCCCCHhhhcCCCCh
Q 018586          131 TCRGPKAVAMDCEMVGGG---SNG-TLDLCARVCLV-DEDEN--VIFHT-YV-QPQLPVTNYRYEVTGLTEEDIKNAMPL  201 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~---~~~-~~~il~~v~iv-d~~g~--~~~~~-lv-~P~~~i~~~~~~~~GIt~e~l~~~~~~  201 (353)
                      +.+..+.+++|+|+....   ++. ..+| ..++++ ...|.  ..... ++ .+..++          ....|....+.
T Consensus         3 ~~p~l~~ls~DIE~~s~~g~fP~p~~D~I-i~Is~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~v~~~~~E   71 (230)
T cd05777           3 KIAPLRILSFDIECAGRKGVFPEPEKDPV-IQIANVVTRQGEGEPFIRNIFTLKTCAPI----------VGAQVFSFETE   71 (230)
T ss_pred             CCCCceEEEEEEEECCCCCCCCCCCCCeE-EEEEEEEEeCCCCCCceeEEEEeCCCCCC----------CCCEEEEECCH
Confidence            346677899999998421   222 2233 344444 22332  11111 11 111111          11223345688


Q ss_pred             HHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-----CcCCC--------------------------
Q 018586          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYPD--------------------------  249 (353)
Q Consensus       202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~~--------------------------  249 (353)
                      .+++..|.+++...++           .+|+|||+ .||+.+|.     +..+.                          
T Consensus        72 ~eLL~~f~~~i~~~DP-----------Dii~GyN~~~FDl~yL~~R~~~l~i~~~~~lgR~~~~~~~~~~~~~~~~~~g~  140 (230)
T cd05777          72 EELLLAWRDFVQEVDP-----------DIITGYNICNFDLPYLLERAKALKLNTFPFLGRIKNIKSTIKDTTFSSKQMGT  140 (230)
T ss_pred             HHHHHHHHHHHHhcCC-----------CEEEEecCCCCCHHHHHHHHHHhCCccccccccccCCceeEeCCccccccccc
Confidence            8999999999955433           59999995 46999976     11110                          


Q ss_pred             ----------CceeecccccCCcccCCCCCcHHHHHHHHhCCc
Q 018586          250 ----------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       250 ----------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  282 (353)
                                ..++|+..+.+.. ....+|+|+++|+.+||..
T Consensus       141 ~~~~~~~i~GR~~iD~~~~~~~~-~kl~sy~L~~Va~~~Lg~~  182 (230)
T cd05777         141 RETKEINIEGRIQFDLLQVIQRD-YKLRSYSLNSVSAHFLGEQ  182 (230)
T ss_pred             ccceEEEEcCEEeeeHHHHHHHh-cCcccCcHHHHHHHHhCCC
Confidence                      1123444433332 2467899999999998876

The 3'-5' exonuclease domain of eukaryotic DNA polymerase delta. DNA polymerase delta is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. It is also implicated in mismatch repair (MMR) and base excision repair (BER). The catalytic subunit displays both polymerase and 3'-5' exonuclease activities. The exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.37  E-value=0.0023  Score=34.82  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=18.9

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|+.|++.|.+...|..|+++|+
T Consensus         2 ~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    2 QCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             E-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCcCCCCcCCcHHHHHHHHHhhC
Confidence            48999999999999999999874

...

>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase

Probab=96.34  E-value=0.028  Score=50.00  Aligned_cols=105  Identities=9%  Similarity=0.107  Sum_probs=66.9

Q ss_pred             CHhhhcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-----CcCC-------C--------
Q 018586          191 TEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYP-------D--------  249 (353)
Q Consensus       191 t~e~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~-------~--------  249 (353)
                      ....|.-.++..+++.+|.+++..-++           .+|+|||+ .||+.+|-     +..+       +        
T Consensus        71 ~~~~v~~~~~E~~LL~~f~~~i~~~DP-----------Dii~GyNi~~fd~~YL~~Ra~~l~~~~~~~~lgR~~~~~~~~  139 (231)
T cd05778          71 SGIPVEVVESELELFEELIDLVRRFDP-----------DILSGYEIQRSSWGYLIERAAALGIDDLLDEISRVPSDSNGK  139 (231)
T ss_pred             CCCeEEEeCCHHHHHHHHHHHHHHhCC-----------CEEEEeccccCcHHHHHHHHHHhCCcchhhhccCCCCCCccc
Confidence            334455667889999999999966644           69999997 57888865     1100       0        


Q ss_pred             --------------------CceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCCCChHHHHH------HHHHHHHH
Q 018586          250 --------------------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCV------SVMRLYKR  303 (353)
Q Consensus       250 --------------------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~------~t~~l~~~  303 (353)
                                          ..++|+..+.+.- ....+|+|..++..+||.....-.+..+.+.+      ...++...
T Consensus       140 ~~~~~~~~g~~~~~~~~i~GRi~lD~~~~~r~~-~kl~sYsL~~V~~~~L~~~k~~~~~~~i~~~~~~~~~~~r~~v~~Y  218 (231)
T cd05778         140 FGDRDDEWGYTHTSGIKIVGRHILNVWRLMRSE-LALTNYTLENVVYHVLHQRIPLYSNKTLTEWYKSGSASERWRVLEY  218 (231)
T ss_pred             ccccccccccccCCceEEeeEEEeEhHHHHHHH-cCcccCCHHHHHHHHhCCCCCCCCHHHHHHHHHcCCHhHhHHHHHH
Confidence                                1122333333221 25678999999999999975544566666653      34455555


Q ss_pred             HHhc
Q 018586          304 FRRQ  307 (353)
Q Consensus       304 ~~~~  307 (353)
                      +.++
T Consensus       219 ~l~d  222 (231)
T cd05778         219 YLKR  222 (231)
T ss_pred             HHHH
Confidence            5554

The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition, DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are crucial for metal binding and catalysis.

>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases

Probab=96.29  E-value=0.013  Score=51.29  Aligned_cols=69  Identities=20%  Similarity=0.249  Sum_probs=48.7

Q ss_pred             ChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-------CcCCC----------------Cceeec
Q 018586          200 PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYPD----------------HMLRDT  255 (353)
Q Consensus       200 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~~----------------~~~~Dt  255 (353)
                      +-.+++.+|.++|.+            .+.+|||||. .||+.+|.       +..|.                ...+|+
T Consensus        77 ~E~elL~~F~~~i~~------------~~p~lv~yNg~~FDlP~L~~Ra~~~gi~~p~~~~~~~~~~~y~~r~~~~h~DL  144 (208)
T cd05782          77 DEKELLEDFFQLIEK------------KNPRLVSFNGRGFDLPVLHLRALIHGVSAPAYFDLGNKDWNYRNRYSERHLDL  144 (208)
T ss_pred             CHHHHHHHHHHHHHH------------hCCEEEecCCCcCCHHHHHHHHHHhCCCCccccCcccchhhccCcCCCCcccH
Confidence            347899999999943            2348999995 88999998       22221                126777


Q ss_pred             ccccCCcccCCCCCcHHHHHHHHhCCc
Q 018586          256 AKYRPLMKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       256 ~~l~~~~~~~~~~~~L~~l~~~~~~~~  282 (353)
                      ..+.+.. ....+++|+.+|+.+ |++
T Consensus       145 ~~~~~~~-~~~~~~~L~~va~~l-G~~  169 (208)
T cd05782         145 MDLLAFY-GARARASLDLLAKLL-GIP  169 (208)
T ss_pred             HHHHhcc-CccCCCCHHHHHHHh-CCC
Confidence            7765443 224689999999876 875

A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.

>PHA02528 43 DNA polymerase; Provisional

Probab=96.24  E-value=0.035  Score=58.56  Aligned_cols=160  Identities=13%  Similarity=0.028  Sum_probs=87.4

Q ss_pred             CCCceeeccCcccccc----CCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccC--CCCHhhhcCCCChHHHHH
Q 018586          133 RGPKAVAMDCEMVGGG----SNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVT--GLTEEDIKNAMPLKEVKD  206 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~----~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~--GIt~e~l~~~~~~~~v~~  206 (353)
                      +.-+++++|+|++..+    +......+..+++.+..+..++-..+....+.........  ....-.+.--.+-.+++.
T Consensus       104 p~lrv~s~DIE~~~~~gfP~p~~~~d~IisIsl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~sE~eLL~  183 (881)
T PHA02528        104 SKIRIANLDIEVTAEDGFPDPEEAKYEIDAITHYDSIDDRFYVFDLGSVEEWDAKGDEVPQEILDKVVYMPFDTEREMLL  183 (881)
T ss_pred             CCccEEEEEEEECCCCCCCCcccCCCcEEEEEEecCCCCEEEEEEecCcccccccCCcccccccCCeeEEEcCCHHHHHH
Confidence            5778999999997521    1111212246666666655432222211000000000000  001111222467889999


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhc------CcC------C-C-----------------------
Q 018586          207 KILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR------MNY------P-D-----------------------  249 (353)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~------~~~------~-~-----------------------  249 (353)
                      .|.+++...++           .+|+||| ..||+.+|.      ++.      . .                       
T Consensus       184 ~F~~~i~~~DP-----------DII~GyNi~~FDlpYL~~Ra~~~lg~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~G  252 (881)
T PHA02528        184 EYINFWEENTP-----------VIFTGWNVELFDVPYIINRIKNILGEKTAKRLSPWGKVKERTIENMYGREEIAYDISG  252 (881)
T ss_pred             HHHHHHHHhCC-----------cEEEecCCccCCHHHHHHHHHHHcCcccccccccccccccccccccccccceeEEEcc
Confidence            99999965543           5999999 557999876      110      0 0                       


Q ss_pred             CceeecccccCCc-ccCCCCCcHHHHHHHHhCCcCCCC----------------CCChHHHHHHHHHHHHH
Q 018586          250 HMLRDTAKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSG----------------VHDPYEDCVSVMRLYKR  303 (353)
Q Consensus       250 ~~~~Dt~~l~~~~-~~~~~~~~L~~l~~~~~~~~~~~~----------------~H~Al~Da~~t~~l~~~  303 (353)
                      .-++|...+.+.+ .....+|+|+.+++.+||..-..-                .+-.+.||..+.+|+.+
T Consensus       253 Rv~lD~~dl~k~~~~~~l~SYsLe~VA~~~LG~~K~d~~~~eI~~l~~~d~~~l~~Ynl~Da~Lv~~L~~k  323 (881)
T PHA02528        253 ISILDYLDLYKKFTFTNQPSYRLDYIAEVELGKKKLDYSDGPFKKFRETDHQKYIEYNIIDVELVDRLDDK  323 (881)
T ss_pred             eEEEeHHHHHHHhhhcccccCCHHHHHHHHhCCCCccCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            0022333333322 224678999999999988763220                11225699999999888

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.23  E-value=0.0036  Score=35.43  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=21.8

Q ss_pred             ceeeccccccccChHHHHHHHhh
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      ||+|..|++.|.....|..|++.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCCccCCccCChhHHHHHhHH
Confidence            68999999999999999999987

>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins

Probab=96.18  E-value=0.026  Score=47.66  Aligned_cols=83  Identities=20%  Similarity=0.227  Sum_probs=60.2

Q ss_pred             CCcEEEecccHHHHHHhcC--cCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCC------C---------CC
Q 018586          227 KARLLVGHGLEHDLDSLRM--NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG------V---------HD  289 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~~--~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~------~---------H~  289 (353)
                      .+...||||+.+|+..|..  +.....+.|++..+..+.|... .+|+.+++.|+|..+...      .         +-
T Consensus        63 ~~i~kv~~d~K~~~~~L~~~~gi~~~~~~D~~laayLl~p~~~-~~l~~l~~~~l~~~~~~~~~~~~w~~~~l~~~~~~y  141 (178)
T cd06142          63 PNIVKVFHAAREDLELLKRDFGILPQNLFDTQIAARLLGLGDS-VGLAALVEELLGVELDKGEQRSDWSKRPLTDEQLEY  141 (178)
T ss_pred             CCceEEEeccHHHHHHHHHHcCCCCCCcccHHHHHHHhCCCcc-ccHHHHHHHHhCCCCCcccccccCCCCCCCHHHHHH
Confidence            4568999999999999952  2223346899887777777544 599999999988763211      0         12


Q ss_pred             hHHHHHHHHHHHHHHHhchhh
Q 018586          290 PYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       290 Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      |..||.++.+|+..+..+..+
T Consensus       142 aa~~a~~l~~L~~~l~~~L~e  162 (178)
T cd06142         142 AALDVRYLLPLYEKLKEELEE  162 (178)
T ss_pred             HHHhHHHHHHHHHHHHHHHHH
Confidence            667788899999888877654

Ribonuclease (RNase) D is a bacterial enzyme involved in the maturation of small stable RNAs and the 3' maturation of tRNA. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. In vivo, RNase D only becomes essential upon removal of other ribonucleases. Eukaryotic RNase D homologs include yeast Rrp6p, human PM/Scl-100, and the Drosophila melanogaster egalitarian protein.

>PRK05762 DNA polymerase II; Reviewed

Probab=96.16  E-value=0.033  Score=58.58  Aligned_cols=99  Identities=18%  Similarity=0.278  Sum_probs=67.0

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-------CcC--------------CC---
Q 018586          195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNY--------------PD---  249 (353)
Q Consensus       195 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~--------------~~---  249 (353)
                      +..-++-.+++..|.+++.+.++           .+|||||+ .||+.+|.       +..              +.   
T Consensus       197 v~~~~sE~~LL~~F~~~i~~~DP-----------DIIvGyNi~~FDlpyL~~Ra~~lgi~~~~GR~~~~~~~~~~~~~~~  265 (786)
T PRK05762        197 LEYVADEKALLEKFNAWFAEHDP-----------DVIIGWNVVQFDLRLLQERAERYGIPLRLGRDGSELEWREHPFRSG  265 (786)
T ss_pred             EEEcCCHHHHHHHHHHHHHhcCC-----------CEEEEeCCCCCcHHHHHHHHHHhCCCcccCcCCCccccccCCCCCC
Confidence            45567889999999999965533           59999995 47999987       111              10   


Q ss_pred             --------CceeecccccCCcccCCCCCcHHHHHHHHhCCcCCC-CCC-------------------ChHHHHHHHHHHH
Q 018586          250 --------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS-GVH-------------------DPYEDCVSVMRLY  301 (353)
Q Consensus       250 --------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~-~~H-------------------~Al~Da~~t~~l~  301 (353)
                              ..++|+..+.+.......+|+|+.+++.+||..-.. ..+                   -.+.||..|.+|+
T Consensus       266 ~~~~~i~GRv~lDl~~~~k~~~~~l~sysL~~Va~~~Lg~~K~~~d~~~~~~eI~~~~~~~~~~l~~Y~l~Da~lt~~L~  345 (786)
T PRK05762        266 YGFASVPGRLVLDGIDALKSATWVFDSFSLEYVSQRLLGEGKAIDDPYDRMDEIDRRFAEDKPALARYNLKDCELVTRIF  345 (786)
T ss_pred             cceEEEeeEEEEEHHHHHHHhhccCCCCCHHHHHHHHhCCCeeccCccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence                    114555555444333567899999999998865321 111                   1367999999998


Q ss_pred             HHH
Q 018586          302 KRF  304 (353)
Q Consensus       302 ~~~  304 (353)
                      .++
T Consensus       346 ~kl  348 (786)
T PRK05762        346 EKT  348 (786)
T ss_pred             HHh
Confidence            844

>PHA00732 hypothetical protein

Probab=96.13  E-value=0.005  Score=44.88  Aligned_cols=44  Identities=20%  Similarity=0.436  Sum_probs=25.8

Q ss_pred             ccccCcccCCChHHHHhccCC-CCCCCCCCccccccccccccccccCchhHHHHHHHh
Q 018586           45 KCAVCQKLSKSFESLREHLTG-PLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEAC  101 (353)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~-~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h  101 (353)
                      .|..|++.|.+.+.|..|+.. ..+          ..|+.|+++|.   .|..|.+++
T Consensus         3 ~C~~Cgk~F~s~s~Lk~H~r~~H~~----------~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          3 KCPICGFTTVTLFALKQHARRNHTL----------TKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             cCCCCCCccCCHHHHHHHhhcccCC----------CccCCCCCEeC---Chhhhhccc
Confidence            577777777777777777631 111          13666666665   355666443

>PTZ00166 DNA polymerase delta catalytic subunit; Provisional

Probab=96.09  E-value=0.033  Score=60.14  Aligned_cols=154  Identities=16%  Similarity=0.137  Sum_probs=88.0

Q ss_pred             ccCCCceeeccCcccccc----CC-CCccceeEEee-ecCCCCe--EE-eeeccCCCCccccccccCCCCHhhhcCCCCh
Q 018586          131 TCRGPKAVAMDCEMVGGG----SN-GTLDLCARVCL-VDEDENV--IF-HTYVQPQLPVTNYRYEVTGLTEEDIKNAMPL  201 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~----~~-~~~~il~~v~i-vd~~g~~--~~-~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~  201 (353)
                      ..++.++++||+|+.+..    ++ ....+ ..++. +...|..  .+ ..++-+..     ...+.|   ..|.-..+-
T Consensus       260 ~~pplrilSfDIE~~~~~g~~FP~~~~D~I-IqIs~~~~~~g~~~~~~~r~vftl~~-----c~~i~g---~~V~~f~sE  330 (1054)
T PTZ00166        260 TIAPLRILSFDIECIKLKGLGFPEAENDPV-IQISSVVTNQGDEEEPLTKFIFTLKE-----CASIAG---ANVLSFETE  330 (1054)
T ss_pred             CCCCcEEEEEEEEECCCCCCCCCCCCCCcE-EEEEEEEeeCCCccCCcceEEEecCc-----cccCCC---ceEEEeCCH
Confidence            457778999999998631    11 12233 23333 2334432  11 11121211     111222   223445688


Q ss_pred             HHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-----CcCCC--------------------------
Q 018586          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYPD--------------------------  249 (353)
Q Consensus       202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~~--------------------------  249 (353)
                      .+++..|.+++..-++           .||+|||+ .||+.+|-     +..+.                          
T Consensus       331 ~eLL~~f~~~I~~~DP-----------DII~GYNi~~FDlpYL~~Ra~~l~i~~~~~lgR~~~~~~~~~~~~~~~~~~g~  399 (1054)
T PTZ00166        331 KELLLAWAEFVIAVDP-----------DFLTGYNIINFDLPYLLNRAKALKLNDFKYLGRIKSTRSVIKDSKFSSKQMGT  399 (1054)
T ss_pred             HHHHHHHHHHHHhcCC-----------CEEEecCCcCCcHHHHHHHHHHhCCCchhhcCcccCCCccccccccccccccc
Confidence            8999999999965543           69999996 47999876     11110                          


Q ss_pred             ----------CceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCCC-------------------ChHHHHHHHHHH
Q 018586          250 ----------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVH-------------------DPYEDCVSVMRL  300 (353)
Q Consensus       250 ----------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H-------------------~Al~Da~~t~~l  300 (353)
                                ..++|+..+.+.. ....+|+|+.++.++||.....-.|                   -.+.||..+.+|
T Consensus       400 ~~~~~~~i~GR~~iDl~~~~~~~-~kl~sYsL~~Vs~~~Lg~~K~dv~~~~i~~~~~~~~~~~~~l~~Y~l~Da~L~~~L  478 (1054)
T PTZ00166        400 RESKEINIEGRIQFDVMDLIRRD-YKLKSYSLNYVSFEFLKEQKEDVHYSIISDLQNGSPETRRRIAVYCLKDAILPLRL  478 (1054)
T ss_pred             cccceeEeeeEEEEEHHHHHHHh-cCcCcCCHHHHHHHHhCCCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence                      1223444444332 2567899999999999976321111                   124688888888


Q ss_pred             HHHHH
Q 018586          301 YKRFR  305 (353)
Q Consensus       301 ~~~~~  305 (353)
                      +.++.
T Consensus       479 ~~kl~  483 (1054)
T PTZ00166        479 LDKLL  483 (1054)
T ss_pred             HHHHh
Confidence            87764

>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]

Probab=95.80  E-value=0.039  Score=55.04  Aligned_cols=95  Identities=21%  Similarity=0.189  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCC-CCceeecccccCCcccCCCCCcHHHHHHHHhCCc
Q 018586          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP-DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  282 (353)
                      +...+..|+            .+.+...||||+.+|+.+|..... .....||+...-.+.|..+.+.+++|++.+++..
T Consensus        66 ~~~~l~~~l------------~~~~~~kv~~~~K~d~~~l~~~Gi~~~~~~DtmlasYll~~~~~~~~~~~l~~r~l~~~  133 (593)
T COG0749          66 VLAALKPLL------------EDEGIKKVGQNLKYDYKVLANLGIEPGVAFDTMLASYLLNPGAGAHNLDDLAKRYLGLE  133 (593)
T ss_pred             hHHHHHHHh------------hCcccchhccccchhHHHHHHcCCcccchHHHHHHHhccCcCcCcCCHHHHHHHhcCCc
Confidence            788888999            446668999999999999983332 1346799999888888888899999999997765


Q ss_pred             CCCC---------------------CCChHHHHHHHHHHHHHHHhchhh
Q 018586          283 IQSG---------------------VHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       283 ~~~~---------------------~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      ....                     .-.+..||.+|.+|+..+..+..+
T Consensus       134 ~~~~~~i~~kg~~~~~~~~~~~~~~~~y~a~~a~~~~~L~~~l~~~l~~  182 (593)
T COG0749         134 TITFEDIAGKGKKQLTFADVKLEKATEYAAEDADATLRLESILEPELLK  182 (593)
T ss_pred             cchhHHhhccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3221                     123467999999999988866544

>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases

Probab=95.78  E-value=0.028  Score=47.62  Aligned_cols=94  Identities=19%  Similarity=0.216  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc---CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhC
Q 018586          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR---MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLG  280 (353)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~  280 (353)
                      +...+.+++.            +.+...|+||+.+|+.+|.   +..+ ..+.||+..+..+.|....++|++++..|++
T Consensus        44 ~~~~l~~~l~------------~~~~~ki~~d~K~~~~~l~~~gi~~~-~~~fDt~laaYLL~p~~~~~~l~~l~~~yl~  110 (178)
T cd06140          44 DLAALKEWLE------------DEKIPKVGHDAKRAYVALKRHGIELA-GVAFDTMLAAYLLDPTRSSYDLADLAKRYLG  110 (178)
T ss_pred             HHHHHHHHHh------------CCCCceeccchhHHHHHHHHCCCcCC-CcchhHHHHHHHcCCCCCCCCHHHHHHHHcC
Confidence            4455777782            2456799999999999996   3333 3468999999888887655799999999988


Q ss_pred             CcCCC------CC-------C-----ChHHHHHHHHHHHHHHHhchhh
Q 018586          281 YDIQS------GV-------H-----DPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       281 ~~~~~------~~-------H-----~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      ..+..      ..       .     -+..||.++..|+..+.++..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~a~~l~~l~~~l~~~L~~  158 (178)
T cd06140         111 RELPSDEEVYGKGAKFAVPDEEVLAEHLARKAAAIARLAPKLEEELEE  158 (178)
T ss_pred             CCCcchHHhcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76321      00       0     1445567777777777776543

Bacillus stearothermophilus-like Polymerase I (Pol I), a subgroup of the family-A DNA polymerases, contains an inactive DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase region. The exonuclease-like domain of these proteins possess the same fold as the Klenow fragment (KF) of Escherichia coli Pol I, but does not contain the four critical metal-binding residues necessary for activity. The function of this domain is unknown. It might act as a spacer between the polymerase and the 5'-3' exonuclease domains. Some members of this subgroup, such as those from Bacillus sphaericus and Thermus aquaticus, are thermostable DNA polymerases.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=95.77  E-value=0.0068  Score=32.84  Aligned_cols=22  Identities=36%  Similarity=0.765  Sum_probs=18.6

Q ss_pred             eeeccccccccChHHHHHHHhh
Q 018586           15 HKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      |.|+.|++.|.....|..|+..
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            6899999999999999999986

...

>KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair]

Probab=95.73  E-value=0.12  Score=55.99  Aligned_cols=185  Identities=15%  Similarity=0.159  Sum_probs=108.6

Q ss_pred             ccccCCCceeeccCcccccc---CC-CCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhh------hcCC
Q 018586          129 KRTCRGPKAVAMDCEMVGGG---SN-GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEED------IKNA  198 (353)
Q Consensus       129 ~~~~~~~~~~~~D~Ettg~~---~~-~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~------l~~~  198 (353)
                      ....+..++.+||+|||-+.   +| ...+|.-.--++|..|-.+.+.-|     |+..+..+.=-..++      +-+.
T Consensus       240 ~i~radp~VlAFDIETtKlPLKFPDae~DqIMMISYMiDGqGfLItNREi-----Vs~DIedfEYTPKpE~eG~F~v~Ne  314 (2173)
T KOG1798|consen  240 LIERADPRVLAFDIETTKLPLKFPDAESDQIMMISYMIDGQGFLITNREI-----VSEDIEDFEYTPKPEYEGPFCVFNE  314 (2173)
T ss_pred             ccccCCceEEEEeeecccCCCCCCCcccceEEEEEEEecCceEEEechhh-----hccchhhcccCCccccccceEEecC
Confidence            34467778999999999864   33 233443344456777776644322     111111111111111      2245


Q ss_pred             CChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHH-HHHHhcC-------cCCC--Cceeeccc-----------
Q 018586          199 MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH-DLDSLRM-------NYPD--HMLRDTAK-----------  257 (353)
Q Consensus       199 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~-D~~~l~~-------~~~~--~~~~Dt~~-----------  257 (353)
                      +.-..++..+.+-+.+.           +..|+|.+|-+| |+.|+..       ....  ....|..-           
T Consensus       315 ~dEv~Ll~RfFeHiq~~-----------kP~iivTyNGDFFDWPFve~Ra~~hGi~m~eEiGF~~D~~gEyks~~c~HmD  383 (2173)
T KOG1798|consen  315 PDEVGLLQRFFEHIQEV-----------KPTIIVTYNGDFFDWPFVEARAKIHGISMNEEIGFRRDSQGEYKSPFCIHMD  383 (2173)
T ss_pred             CcHHHHHHHHHHHHHhc-----------CCcEEEEecCccccchhhHHHHHhcCCCcchhcCceecccccccccceeehh
Confidence            66778888888888554           667999999655 9999881       1100  11123222           


Q ss_pred             ccCCc----ccCCCCCcHHHHHHHHhCCcCCCC----------------CCChHHHHHHHHHHHHHHHhchhhhhhhccc
Q 018586          258 YRPLM----KTNLVSHSLKYLTRTYLGYDIQSG----------------VHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQ  317 (353)
Q Consensus       258 l~~~~----~~~~~~~~L~~l~~~~~~~~~~~~----------------~H~Al~Da~~t~~l~~~~~~~~~~~~~~~~~  317 (353)
                      -+++.    +-..++.+|+.+.+.-||...-.-                +--+..||+||.-||.++..-+-  +..-  
T Consensus       384 cfrWVKRDSYLPqGSqgLKAVTkaKLGYdPvEvdPEdM~~~A~EkPQ~lasYSVSDAVATYyLYMkYVhPFI--FsLc--  459 (2173)
T KOG1798|consen  384 CFRWVKRDSYLPQGSQGLKAVTKAKLGYDPVEVDPEDMVRMAMEKPQTLASYSVSDAVATYYLYMKYVHPFI--FSLC--  459 (2173)
T ss_pred             hhhhhhhcccCCCcccchhHHHHHhhCCCcccCCHHHhhhhhhhCchhhhhcchHHHHHHHHHHHHHhhhHH--hhhh--
Confidence            11222    224557889998888778762211                34458899999999999876531  1111  


Q ss_pred             CCCCCCCCcchhHHhhcChhhhhccCCC
Q 018586          318 NTTGSFDSYKYKELEKMSPNELYQISKS  345 (353)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (353)
                                  -+.++.|+|.+.-+.+
T Consensus       460 ------------tIIPl~PDevLRKGSG  475 (2173)
T KOG1798|consen  460 ------------TIIPLNPDEVLRKGSG  475 (2173)
T ss_pred             ------------hccccChHHHHhcCcc
Confidence                        1577889988876654

>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase

Probab=95.72  E-value=0.023  Score=50.69  Aligned_cols=76  Identities=26%  Similarity=0.321  Sum_probs=54.9

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-----CcCC--------------------
Q 018586          195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYP--------------------  248 (353)
Q Consensus       195 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~--------------------  248 (353)
                      |.-..+..+.+..|.+++.+.++           .+|||||+ .||+.+|-     +..+                    
T Consensus        76 v~~~~~E~~LL~~f~~~i~~~DP-----------DiivG~Ni~~fdl~~L~~R~~~l~i~~ws~iGR~~~~~~~~~~~~~  144 (234)
T cd05776          76 VRIFENERALLNFFLAKLQKIDP-----------DVLVGHDLEGFDLDVLLSRIQELKVPHWSRIGRLKRSVWPKKKGGG  144 (234)
T ss_pred             EEEeCCHHHHHHHHHHHHhhcCC-----------CEEEeeccCCCCHHHHHHHHHHhCCCccccccccccccCccccccc
Confidence            44457788999999999976644           69999998 88999976     1111                    


Q ss_pred             ---------CCceeecccccCCcccCCCCCcHHHHHHHHhCCc
Q 018586          249 ---------DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       249 ---------~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  282 (353)
                               ...++|+..+++.+. ...+|+|.++++.+||..
T Consensus       145 ~~~~~~~~~GRl~~D~~~~~k~~~-~~~sY~L~~va~~~Lg~~  186 (234)
T cd05776         145 KFGERELTAGRLLCDTYLSAKELI-RCKSYDLTELSQQVLGIE  186 (234)
T ss_pred             cccccccccCchhhccHHHHHHHh-CCCCCChHHHHHHHhCcC
Confidence                     012345655555443 367999999999998974

The 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha. DNA polymerase alpha is a family-B DNA polymerase with a catalytic subunit that contains a DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (delta and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. It associates with DNA primase and is the only enzyme able to start DNA synthesis de novo. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.55  E-value=0.0096  Score=38.71  Aligned_cols=27  Identities=22%  Similarity=0.531  Sum_probs=21.2

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~  106 (353)
                      .|++|+..+.+.-+|++|++.+++.||
T Consensus        26 tCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   26 TCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             E-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCcchhhccchhhHHHHHHHHhcccC
Confidence            599999999999999999999888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=95.51  E-value=0.0099  Score=32.68  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=20.4

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|+.|+++|...+.|..|++.|.
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHHhc
Confidence            48899999999999999999775

>PHA02570 dexA exonuclease; Provisional

Probab=95.31  E-value=0.081  Score=45.99  Aligned_cols=169  Identities=20%  Similarity=0.202  Sum_probs=84.5

Q ss_pred             eeccCccccccCCCCccceeEEeeecCCCCe-EEeeeccCCCCcccccc------ccCCC--------CHhh---hc---
Q 018586          138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENV-IFHTYVQPQLPVTNYRY------EVTGL--------TEED---IK---  196 (353)
Q Consensus       138 ~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~-~~~~lv~P~~~i~~~~~------~~~GI--------t~e~---l~---  196 (353)
                      +.+|.||-|..++..+-.+++|.+....|.. .|+.+|.....+.-...      .+.+=        ++|.   |.   
T Consensus         4 lMIDlETmG~~p~AaIisIgAV~Fdp~~~~g~tF~elV~~~~~~k~d~~sq~g~~~~d~~TI~WW~kQS~EAR~~L~~s~   83 (220)
T PHA02570          4 FIIDFETFGNTPDGAVIDLAVIAFEHDPHNPPTFEELVSRGRRIKFDLKSQKGKRLFDKSTIEWWKNQSPEARKNLKPSD   83 (220)
T ss_pred             EEEEeeccCCCCCceEEEEEEEEecCCCCccccHHHHhhcccccccchhhccCCCccCchHHHHHHhCCHHHHHhccCCC
Confidence            5799999999877665444666664333322 36666653211111000      01111        1111   11   


Q ss_pred             CCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCCC-CceeecccccCCcccCCCCCcHHHHH
Q 018586          197 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD-HMLRDTAKYRPLMKTNLVSHSLKYLT  275 (353)
Q Consensus       197 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~-~~~~Dt~~l~~~~~~~~~~~~L~~l~  275 (353)
                      +..++.+++.+|.+||.....       ......+=|-+..||+.+|+--+-. +...+|-...+..+.+.+.  -..+.
T Consensus        84 ~~~~l~~al~~F~~fi~~~~~-------~~~~~~vWgnG~sFD~~IL~~a~r~~~~~~~~~~~~Pw~fwN~RD--VRT~i  154 (220)
T PHA02570         84 EDVSTYEGHKKFFEYLEANGV-------DPWKSQGWCRGNSFDFPILVDVIRDIHNTRDTFKLEPVKFWNQRD--VRTAI  154 (220)
T ss_pred             ccccHHHHHHHHHHHHHHcCC-------CccceeEecCCCccCHHHHHHHHHHHhcccCcCcCCCeeecCccc--hHHHH
Confidence            235699999999999943210       0123566778899999999611100 0011222222222222221  11222


Q ss_pred             HH-HhCCc-----CC----CC--CCChHHHHHHHHHHHHHHHhchhhhhhhc
Q 018586          276 RT-YLGYD-----IQ----SG--VHDPYEDCVSVMRLYKRFRRQDHQVEEIG  315 (353)
Q Consensus       276 ~~-~~~~~-----~~----~~--~H~Al~Da~~t~~l~~~~~~~~~~~~~~~  315 (353)
                      +. +|+..     +.    .|  +|+|+-||.--+..+..-.+-...+++.+
T Consensus       155 e~~~l~r~~~~cp~~~g~l~gfv~H~sihDcakd~lml~y~~rya~~le~~p  206 (220)
T PHA02570        155 EATLLTRGMTTCPLPKGTLDGFVAHDSIHDCAKDILMLIYAKRYALGLEDLP  206 (220)
T ss_pred             hhhhccCCcccCCCcCccccchhhcccHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence            21 12222     11    11  79999999877777666666555555554

>TIGR00593 pola DNA polymerase I

Probab=95.14  E-value=0.045  Score=57.96  Aligned_cols=96  Identities=18%  Similarity=0.144  Sum_probs=70.2

Q ss_pred             ChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc---CcCCCCceeecccccCCcccCCCCCcHHHHHH
Q 018586          200 PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR---MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTR  276 (353)
Q Consensus       200 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~  276 (353)
                      +...+...+..++.            +.+...||||+.||+.+|.   +..+ ..+.||+..+..+.|... .+|++++.
T Consensus       362 ~~~~~~~~l~~~l~------------~~~~~~v~~n~K~d~~~l~~~gi~~~-~~~~Dt~la~yll~~~~~-~~l~~la~  427 (887)
T TIGR00593       362 LTILTDDKFARWLL------------NEQIKKIGHDAKFLMHLLKREGIELG-GVIFDTMLAAYLLDPAQV-STLDTLAR  427 (887)
T ss_pred             hhHHHHHHHHHHHh------------CCCCcEEEeeHHHHHHHHHhCCCCCC-CcchhHHHHHHHcCCCCC-CCHHHHHH
Confidence            35567777888883            3445689999999999997   2222 346899998888887554 59999999


Q ss_pred             HHhCCcCCC-------C----C-------CChHHHHHHHHHHHHHHHhchh
Q 018586          277 TYLGYDIQS-------G----V-------HDPYEDCVSVMRLYKRFRRQDH  309 (353)
Q Consensus       277 ~~~~~~~~~-------~----~-------H~Al~Da~~t~~l~~~~~~~~~  309 (353)
                      .|++...-.       +    .       .-|..||.+|..||..+..+..
T Consensus       428 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~ya~~d~~~~~~L~~~l~~~l~  478 (887)
T TIGR00593       428 RYLVEELILDEKIGGKLAKFAFPPLEEATEYLARRAAATKRLAEELLKELD  478 (887)
T ss_pred             HHcCcccccHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            997754110       0    0       1367789999999999887754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=95.13  E-value=0.0074  Score=34.10  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=20.4

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|..|++.|.....|..|++.|.
T Consensus         3 ~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    3 ECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             EETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCccCCccCChhHHHHHhHHhc
Confidence            48999999999999999998775

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=94.96  E-value=0.026  Score=37.89  Aligned_cols=36  Identities=25%  Similarity=0.537  Sum_probs=22.1

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCCCC-C-ccccCcc
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQ-P-KCAVCQK   51 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~-~-~C~~C~~   51 (353)
                      .|.|+.|++. .+...|..|.... |..+. . .|+.|..
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~-H~~~~~~v~CPiC~~   39 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDE-HRSESKNVVCPICSS   39 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhH-CcCCCCCccCCCchh
Confidence            4788889884 4456788887653 54432 2 4444443

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=94.84  E-value=0.011  Score=53.37  Aligned_cols=24  Identities=33%  Similarity=0.577  Sum_probs=21.8

Q ss_pred             CCceeecc--ccccccChHHHHHHHh
Q 018586           12 TARHKCVA--CYKQFKRKDHLIEHMK   35 (353)
Q Consensus        12 ~k~~~C~~--C~k~f~~~~~l~~H~~   35 (353)
                      +|||+|++  |.|+++....|+-|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~l  372 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHML  372 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhh
Confidence            59999997  9999999999999987

>smart00355 ZnF_C2H2 zinc finger

Probab=94.53  E-value=0.026  Score=30.88  Aligned_cols=22  Identities=45%  Similarity=0.760  Sum_probs=19.9

Q ss_pred             eeeccccccccChHHHHHHHhh
Q 018586           15 HKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      |.|+.|++.|.....+..|++.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHH
Confidence            5799999999999999999986

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.31  E-value=0.03  Score=42.30  Aligned_cols=75  Identities=25%  Similarity=0.415  Sum_probs=21.0

Q ss_pred             eeccccccccChHHHHHHHhhhcCCCCCCccccCcccCCChHHHHhccCCCCCCCCCCccccccccccccccccCchhHH
Q 018586           16 KCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLI   95 (353)
Q Consensus        16 ~C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~   95 (353)
                      +|..|+..|.....+..|+... |.-..+..    ..+.....+..+....        ......|..|++.|.+...|.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~-H~~~~~~~----~~l~~~~~~~~~~~~~--------~~~~~~C~~C~~~f~s~~~l~   67 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKK-HGFDIPDQ----KYLVDPNRLLNYLRKK--------VKESFRCPYCNKTFRSREALQ   67 (100)
T ss_dssp             -------------------------------------------------------------SSEEBSSSS-EESSHHHHH
T ss_pred             Cccccccccccccccccccccc-cccccccc----cccccccccccccccc--------cCCCCCCCccCCCCcCHHHHH
Confidence            4889999999999999998642 43222211    1111122222222100        000236999999999999999


Q ss_pred             HHHHHhcC
Q 018586           96 KHKEACSL  103 (353)
Q Consensus        96 ~H~~~h~~  103 (353)
                      .|++.+..
T Consensus        68 ~Hm~~~~H   75 (100)
T PF12756_consen   68 EHMRSKHH   75 (100)
T ss_dssp             HHHHHTTT
T ss_pred             HHHcCccC
Confidence            99998643

>smart00486 POLBc DNA polymerase type-B family

Probab=94.31  E-value=0.37  Score=47.26  Aligned_cols=93  Identities=18%  Similarity=0.298  Sum_probs=61.9

Q ss_pred             CChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccH-HHHHHhc-----CcCC------------------------
Q 018586          199 MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR-----MNYP------------------------  248 (353)
Q Consensus       199 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~-----~~~~------------------------  248 (353)
                      ....+.+..|.+++...+           ..+++|||.. ||+.+|.     +..+                        
T Consensus        67 ~~E~~lL~~f~~~i~~~d-----------pdii~g~N~~~FD~~~i~~R~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~  135 (471)
T smart00486       67 NNEKELLKAFLEFIKKYD-----------PDIIYGHNISNFDLPYIISRLEKLKIKPLSFIGRLKNIIDIKRKKPLFGSK  135 (471)
T ss_pred             CCHHHHHHHHHHHHHHhC-----------CCEEEeecCCCCCHHHHHHHHHHcCCCCHHHcCcCCCCCCcccccCccccc
Confidence            377888999999985442           3699999975 8999976     1110                        


Q ss_pred             -----------CCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCC--C------------------ChHHHHHHH
Q 018586          249 -----------DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV--H------------------DPYEDCVSV  297 (353)
Q Consensus       249 -----------~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~--H------------------~Al~Da~~t  297 (353)
                                 ....+|+..+.+... ....++|+.+++.+||.. ...-  .                  -.+.||..+
T Consensus       136 ~~~~~~~~~~~g~~~~Dl~~~~~~~~-kl~~~~L~~va~~~l~~~-k~d~~~~~i~~~~~~~~~~~~~~~~Y~~~D~~l~  213 (471)
T smart00486      136 SFGKTIKVKIKGRLVIDLYNLYKNKL-KLPSYKLDTVAEYLLGKE-KDDLPYKDIPELYNLNYKLRDELLEYCIQDAVLT  213 (471)
T ss_pred             cccccceeEeccEEEEEhHHHHHHHh-CcccCCHHHHHHHHhCCC-CCCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence                       023456666555444 367899999999998844 2211  1                  114588888


Q ss_pred             HHHHHHH
Q 018586          298 MRLYKRF  304 (353)
Q Consensus       298 ~~l~~~~  304 (353)
                      .+|+.++
T Consensus       214 ~~l~~~l  220 (471)
T smart00486      214 LKLFNKL  220 (471)
T ss_pred             HHHHHHH
Confidence            8888885

DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA polymerases in archaea, DNA polymerase II in e. coli, mitochondrial DNA polymerases and and virus DNA polymerases

>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins

Probab=94.13  E-value=0.13  Score=41.82  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=42.6

Q ss_pred             CCcEEEecccHHHHHHhcC---cCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCc
Q 018586          227 KARLLVGHGLEHDLDSLRM---NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~~---~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  282 (353)
                      .+...|+|++..|+.+|..   ..+ ..+.||+..+..+.|...+.+|+.|++.|++..
T Consensus        52 ~~~~kv~~d~K~~~~~L~~~~~~~~-~~~~D~~laayLl~p~~~~~~l~~l~~~~l~~~  109 (150)
T cd09018          52 EKALKVGQNLKYDRGILLNYFIELR-GIAFDTMLEAYILNSVAGRWDMDSLVERWLGHK  109 (150)
T ss_pred             CCCceeeecHHHHHHHHHHcCCccC-CcchhHHHHHHHhCCCCCCCCHHHHHHHHhCCC
Confidence            4567899999999999962   222 346899998888877542359999999998877

DEDDy exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. They contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDy exonucleases are classified as such because of the presence of a specific YX(3)D pattern at ExoIII. The four conserved acidic residues serve as ligands for the two metal ions required for catalysis. This family of DEDDy exonucleases includes the proofreading domains of family A DNA polymerases, as well as RNases such as RNase D and yeast Rrp6p. The Egalitarian (Egl) and Bacillus-like DNA Polymerase I subfamilies do not possess a completely conserved YX(3)D pattern at the ExoIII motif. In addition, the Bacillus-like DNA polymerase I subfamily has inactive 3'-5' exonucle

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.00  E-value=0.059  Score=35.10  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=18.5

Q ss_pred             CCCCceeeccccccccChHHHHHHHhh
Q 018586           10 RSTARHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      ..+.|..|+.|+..+.+..+|.+|+..
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~   46 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEI   46 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHH
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHH
Confidence            346788999999999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included

Probab=93.97  E-value=0.1  Score=48.70  Aligned_cols=90  Identities=13%  Similarity=0.161  Sum_probs=53.9

Q ss_pred             CCCceeeccCccccccC----CCCccceeEEee-ecCCC-----CeEEeeeccCCCCccccccccCCCCHhhhcCCCChH
Q 018586          133 RGPKAVAMDCEMVGGGS----NGTLDLCARVCL-VDEDE-----NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLK  202 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~~----~~~~~il~~v~i-vd~~g-----~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~  202 (353)
                      +...++++|+|+...+.    ....+| ..+++ +...|     ....-.+..+... ..         ...+.-..+..
T Consensus       155 p~l~i~s~DIe~~~~~~~~P~~~~d~I-~~Is~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~v~~~~~E~  223 (325)
T PF03104_consen  155 PPLRILSFDIETYSNDGKFPDPEKDEI-IMISYVVYRNGSSEPYRRKVFTLGSCDSI-ED---------NVEVIYFDSEK  223 (325)
T ss_dssp             GGSEEEEEEEEECSSSSSS-TTTTSEE-EEEEEEEEETTEEETTEEEEEECSCSCCT-TC---------TTEEEEESSHH
T ss_pred             cccceeEEEEEEccccCCCCCCCCCeE-EEEEEEEEeccccCCCceEEEEecCCCCC-CC---------CcEEEEECCHH
Confidence            67789999999997641    223333 34443 22222     1112222222211 11         33444557788


Q ss_pred             HHHHHHHHHHhcCCCCcccccCCCCCcEEEecccH-HHHHHhc
Q 018586          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR  244 (353)
Q Consensus       203 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~  244 (353)
                      +++..|.++|.+.++           .+|+|||+. ||+.+|-
T Consensus       224 ~lL~~f~~~i~~~dP-----------Dii~GyN~~~fD~~yl~  255 (325)
T PF03104_consen  224 ELLEAFLDIIQEYDP-----------DIITGYNIDGFDLPYLI  255 (325)
T ss_dssp             HHHHHHHHHHHHHS------------SEEEESSTTTTHHHHHH
T ss_pred             HHHHHHHHHHHhcCC-----------cEEEEecccCCCHHHHH
Confidence            999999999966543           599999966 7999987

; InterPro: IPR006133 DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases 2.7.7.7 from EC) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known. However, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold [].; GO: 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1QHT_A 4AHC_A 3A2F_A 2JGU_A 4AIL_C 1NOY_A 1NOZ_B 3IAY_A 1WNS_A 3K5O_A ....

>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins

Probab=93.88  E-value=0.083  Score=45.45  Aligned_cols=82  Identities=26%  Similarity=0.309  Sum_probs=57.6

Q ss_pred             CCcEEEecccHHHHHHhc--CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCC-------CCC--------C
Q 018586          227 KARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS-------GVH--------D  289 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~-------~~H--------~  289 (353)
                      .+...|+|++..|+..|.  .+.....++|++..+..+.|. . .+|+.|++.|++..+..       +..        -
T Consensus        76 ~~i~kv~~d~K~~~~~L~~~~gi~~~~~fD~~laaYLL~p~-~-~~l~~l~~~yl~~~~~k~~~~~~~~~~~l~~~~~~y  153 (192)
T cd06147          76 PNILKVFHGADSDIIWLQRDFGLYVVNLFDTGQAARVLNLP-R-HSLAYLLQKYCNVDADKKYQLADWRIRPLPEEMIKY  153 (192)
T ss_pred             CCceEEEechHHHHHHHHHHhCCCcCchHHHHHHHHHhCCC-c-ccHHHHHHHHhCCCcchhhhccccccCCCCHHHHHH
Confidence            557899999999999984  222111238999988888887 5 49999999998776210       112        1


Q ss_pred             hHHHHHHHHHHHHHHHhchhh
Q 018586          290 PYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       290 Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      +..||.+...|+..+..+.++
T Consensus       154 ~a~~a~~l~~L~~~L~~~L~e  174 (192)
T cd06147         154 AREDTHYLLYIYDRLRNELLE  174 (192)
T ss_pred             HHhhHHHHHHHHHHHHHHHHH
Confidence            455677778888888777654

Yeast Rrp6p and its human homolog, the polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100), are exosome-associated proteins involved in the degradation and processing of precursors to stable RNAs. Both proteins contain a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PM/Scl-100, an autoantigen present in the nucleolar compartment of the cell, reacts with autoantibodies produced by about 50% of patients with polymyositis-scleroderma overlap syndrome.

>PHA02524 43A DNA polymerase subunit A; Provisional

Probab=93.82  E-value=0.49  Score=46.65  Aligned_cols=93  Identities=10%  Similarity=0.010  Sum_probs=61.1

Q ss_pred             CCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhc------CcC---------CC-----------
Q 018586          197 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR------MNY---------PD-----------  249 (353)
Q Consensus       197 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~------~~~---------~~-----------  249 (353)
                      .-++-.+++.++.+|+.+.++           .+|+||| ..||+.+|-      ++.         .+           
T Consensus       176 ~f~sE~eLL~~F~~~i~~~DP-----------DIItGYNi~nFDlPYL~~Ra~~~lGi~~~~~~~~~Gr~~~~~s~~~~G  244 (498)
T PHA02524        176 PFEDEVDLLLNYIQLWKANTP-----------DLVFGWNSEGFDIPYIITRITNILGEKAANQLSPYGKITSKTITNLYG  244 (498)
T ss_pred             EeCCHHHHHHHHHHHHHHhCC-----------CEEEeCCCcccCHHHHHHHHHHHhCCccccccccccccccccceeecC
Confidence            457889999999999965533           6999999 457888765      111         00           


Q ss_pred             ---------CceeecccccCCc-ccCCCCCcHHHHHHHHhCCcCCCCCCC----------------hHHHHHHHHHHH
Q 018586          250 ---------HMLRDTAKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGVHD----------------PYEDCVSVMRLY  301 (353)
Q Consensus       250 ---------~~~~Dt~~l~~~~-~~~~~~~~L~~l~~~~~~~~~~~~~H~----------------Al~Da~~t~~l~  301 (353)
                               .-++|...+.+.. .....+|+|+.++..++|.. ....|.                .+.||..+..|+
T Consensus       245 ~~~~~~I~GRv~iDl~~l~kk~s~~~l~sYsL~~Vs~~~Lg~~-K~d~~~~I~~l~~~d~~rla~YclkDa~L~~~L~  321 (498)
T PHA02524        245 EKIIYKIHGIALMDYMDVFKKFSFTPMPDYKLGNVGYREVKAD-KLDYEGPINKFRKADHQRYVDYCVRDTDIILLID  321 (498)
T ss_pred             ceeEEEEeeEEEeEHHHHHHHhhhccCCCCCHHHHHHHhcCCc-cccchhhHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence                     1123445555443 34678999999999887765 333332                245888876665

>KOG4793 consensus Three prime repair exonuclease [Replication, recombination and repair]

Probab=93.26  E-value=0.13  Score=45.73  Aligned_cols=130  Identities=15%  Similarity=0.124  Sum_probs=81.9

Q ss_pred             eeeccCCCCccccccccCCCCHhhhc--CCCCh-HHHHHHHHHHHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhc--
Q 018586          171 HTYVQPQLPVTNYRYEVTGLTEEDIK--NAMPL-KEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR--  244 (353)
Q Consensus       171 ~~lv~P~~~i~~~~~~~~GIt~e~l~--~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~--  244 (353)
                      ..++.|.....+.+.+|+|++++-+.  ...-| .++..-+..|+..-          +.---||+|| -++|+.+|.  
T Consensus        70 svl~~p~~v~~p~aeeitgls~~~~~l~rr~~~D~dla~LL~afls~l----------p~p~CLVaHng~~~dfpil~qe  139 (318)
T KOG4793|consen   70 SVLGGPVPVTRPIAEEITGLSQPFLALQRRLAFDKDLAKLLTAFLSRL----------PTPGCLVAHNGNEYDFPILAQE  139 (318)
T ss_pred             hhccCCcCCcChhhhhhcccccHHHHHHHHhhhhHHHHHHHHHHHhcC----------CCCceEEeecCCccccHHHHHH
Confidence            56677777788888999999986554  32333 34555555666221          2444689999 445666665  


Q ss_pred             -----CcCCC-CceeecccccCCc--------cc-CCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchh
Q 018586          245 -----MNYPD-HMLRDTAKYRPLM--------KT-NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH  309 (353)
Q Consensus       245 -----~~~~~-~~~~Dt~~l~~~~--------~~-~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~  309 (353)
                           +..|. ...+|+......+        .+ ..++|+|..+-..|.+-.-..+.|.|..|.-...-+|....+++-
T Consensus       140 la~lg~~lpq~lvcvdslpa~~ald~a~s~~tr~~~~~~~~l~~If~ry~~q~eppa~~~~e~d~~~l~~~fqf~~~ell  219 (318)
T KOG4793|consen  140 LAGLGYSLPQDLVCVDSLPALNALDRANSMVTRPEVRRMYSLGSIFLRYVEQREPPAGHVAEGDVNGLLFIFQFRINELL  219 (318)
T ss_pred             HHhcCccchhhhcCcchhHHHHHHhhhcCcccCCCCCcccccchHHHhhhcccCCCcceeeecccchhHHHHHHHHHHHH
Confidence                 44444 2234554432211        11 345799999988886663245589999998888777777666643


Q ss_pred             h
Q 018586          310 Q  310 (353)
Q Consensus       310 ~  310 (353)
                      .
T Consensus       220 R  220 (318)
T KOG4793|consen  220 R  220 (318)
T ss_pred             h
Confidence            3

>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair]

Probab=93.14  E-value=0.93  Score=47.85  Aligned_cols=77  Identities=19%  Similarity=0.247  Sum_probs=55.8

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccH-HHHHHhc-----CcCCC-------------------
Q 018586          195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR-----MNYPD-------------------  249 (353)
Q Consensus       195 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~-----~~~~~-------------------  249 (353)
                      +....+-.+++..|.+++.+.+           ..++||||.. ||+.+|.     +..+.                   
T Consensus       205 v~~~~~e~e~l~~~~~~i~~~d-----------PdVIvgyn~~~fd~pyl~~Ra~~lgi~~~~gr~~~~~~~~~~~~~~~  273 (792)
T COG0417         205 VEVVISEAELLERFVELIREYD-----------PDVIVGYNGDNFDWPYLAERAERLGIPLRLGRDGSELRVRKSGFSSQ  273 (792)
T ss_pred             eEEecCHHHHHHHHHHHHHhcC-----------CCEEEeccCCcCChHHHHHHHHHhCCCccccccccccceeecccccc
Confidence            4555678899999999997664           4799999987 8999987     11111                   


Q ss_pred             --CceeecccccCCcccCCCCCcHHHHHHHHhCCc
Q 018586          250 --HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       250 --~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  282 (353)
                        ...+|+..+..........|+|...++.+++..
T Consensus       274 ~Gr~~iDl~~~~~~~~~~~~~ysl~~v~~~~l~~~  308 (792)
T COG0417         274 VGRLHIDLYPALRRRPLNLKSYSLEAVSEALLGEG  308 (792)
T ss_pred             cceEEEecHHHHhhhhcccccccHHHHHHHhcccc
Confidence              235666666653233567899999999997766

>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair]

Probab=92.77  E-value=0.26  Score=50.43  Aligned_cols=85  Identities=22%  Similarity=0.276  Sum_probs=57.4

Q ss_pred             CCCcEEEecccHHHHHHhc----CcCCCCceeecccccCCcccC------------------------------------
Q 018586          226 GKARLLVGHGLEHDLDSLR----MNYPDHMLRDTAKYRPLMKTN------------------------------------  265 (353)
Q Consensus       226 ~~~~~lvgh~~~~D~~~l~----~~~~~~~~~Dt~~l~~~~~~~------------------------------------  265 (353)
                      .++.++||||+.||..-++    +.-....++||+.|.--..+.                                    
T Consensus       239 ~ke~liVGHNVsfDRaRirEeY~i~~Sk~rFlDTMSlHia~~Gm~S~Qrplw~ka~k~k~a~~d~~~~ps~~d~~~pWL~  318 (1075)
T KOG3657|consen  239 GKEQLIVGHNVSFDRARIREEYNINGSKIRFLDTMSLHIAMSGMCSRQRPLWFKARKAKSAMYDSETNPSISDYDNPWLG  318 (1075)
T ss_pred             CCCceEEeccccchHHHHHHHHhccccceeeeechhhhhhhhccccccchhHhhhhhhhhhhhhcccCCchhhhhhhhhh
Confidence            3778999999999999998    333347789998765322210                                    


Q ss_pred             -CCCCcHHHHHHHHhCCc-CCCCCCCh--------------------HHHHHHHHHHHHHHHhchhh
Q 018586          266 -LVSHSLKYLTRTYLGYD-IQSGVHDP--------------------YEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       266 -~~~~~L~~l~~~~~~~~-~~~~~H~A--------------------l~Da~~t~~l~~~~~~~~~~  310 (353)
                       ..-.||.++++.+.|++ +...-.+.                    .-|+++|.+||..++=.+.+
T Consensus       319 ~SS~NSL~dVhk~~c~~~~LdKt~Rd~Fvs~~~e~Ire~fq~L~~YCA~Dv~aThqVf~~lfP~Fle  385 (1075)
T KOG3657|consen  319 RSSLNSLVDVHKFHCGIDALDKTPRDSFVSGTKEQIRENFQPLMNYCARDVIATHQVFFRLFPLFLE  385 (1075)
T ss_pred             hhhhHHHHHHHHhhCCCCccccchHHhhhcCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence             00256788888887777 33321111                    12899999999998876654

>COG3359 Predicted exonuclease [DNA replication, recombination, and repair]

Probab=92.46  E-value=0.4  Score=42.31  Aligned_cols=75  Identities=20%  Similarity=0.220  Sum_probs=43.2

Q ss_pred             CCcEEEecc-cHHHHHHhc------CcC-CCCceeecccccCCcc-cCCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHH
Q 018586          227 KARLLVGHG-LEHDLDSLR------MNY-PDHMLRDTAKYRPLMK-TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSV  297 (353)
Q Consensus       227 ~~~~lvgh~-~~~D~~~l~------~~~-~~~~~~Dt~~l~~~~~-~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t  297 (353)
                      .-..||.+| ..||..|++      +.. +...-+|.+--.+.+. ....+-+|+.+-+ +||+.-...  ---.|+...
T Consensus       155 ~~~~lvsfNGkaFD~PfikR~v~~~~el~l~~~H~DL~h~~RRlwk~~l~~c~Lk~VEr-~LGi~R~ed--tdG~~~p~l  231 (278)
T COG3359         155 DFNMLVSFNGKAFDIPFIKRMVRDRLELSLEFGHFDLYHPSRRLWKHLLPRCGLKTVER-ILGIRREED--TDGYDGPEL  231 (278)
T ss_pred             CcceEEEecCcccCcHHHHHHHhcccccCccccchhhhhhhhhhhhccCCCCChhhHHH-HhCcccccc--CCCcchHHH
Confidence            445889988 778999998      111 1234567766555443 2445678999666 557763321  112344455


Q ss_pred             HHHHHHH
Q 018586          298 MRLYKRF  304 (353)
Q Consensus       298 ~~l~~~~  304 (353)
                      .++|+..
T Consensus       232 yr~~~~~  238 (278)
T COG3359         232 YRLYRRY  238 (278)
T ss_pred             HHHHHHc
Confidence            5555444

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.30  E-value=0.096  Score=29.06  Aligned_cols=21  Identities=38%  Similarity=0.910  Sum_probs=15.7

Q ss_pred             ccccccccccCchhHHHHHHHh
Q 018586           80 GCNLCMNIFDSPSSLIKHKEAC  101 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h  101 (353)
                      .|+.||+.| ..+.|..|+.+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~~C   24 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEKIC   24 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHHhc
Confidence            488899999 556778887653

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=92.23  E-value=0.054  Score=29.81  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=18.6

Q ss_pred             ccccccccccCchhHHHHHHHh
Q 018586           80 GCNLCMNIFDSPSSLIKHKEAC  101 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h  101 (353)
                      .|..|++.|.+...|..|.+.+
T Consensus         2 ~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCcCCHHHHHHHHCcC
Confidence            3889999999999999998754

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=92.23  E-value=0.13  Score=28.22  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=19.6

Q ss_pred             eeeccccccccChHHHHHHHhh
Q 018586           15 HKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      |.|..|++.|.+...+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            6799999999999999999875

>PRK04860 hypothetical protein; Provisional

Probab=92.09  E-value=0.1  Score=43.49  Aligned_cols=38  Identities=13%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCCh
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSF   56 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~   56 (353)
                      =+|.|. |++   ....+.+|.++  |+++++ .|..|++.|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri--~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRV--VRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHH--hcCCccEECCCCCceeEEe
Confidence            368998 987   66778899999  999887 999999887543

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=92.08  E-value=0.23  Score=33.24  Aligned_cols=18  Identities=44%  Similarity=0.600  Sum_probs=10.8

Q ss_pred             ccccCcccCCChHHHHhcc
Q 018586           45 KCAVCQKLSKSFESLREHL   63 (353)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~   63 (353)
                      .|+.|++ ......|..|.
T Consensus         4 ~CP~C~~-~~~~~~L~~H~   21 (54)
T PF05605_consen    4 TCPYCGK-GFSESSLVEHC   21 (54)
T ss_pred             CCCCCCC-ccCHHHHHHHH
Confidence            5666666 34455666665

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PRK04860 hypothetical protein; Provisional

Probab=90.64  E-value=0.17  Score=42.22  Aligned_cols=33  Identities=12%  Similarity=0.220  Sum_probs=28.6

Q ss_pred             cccccccccccCchhHHHHHHHhcCCCCCCcccCCcc
Q 018586           79 RGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSN  115 (353)
Q Consensus        79 ~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~  115 (353)
                      ..|. |++   ...++++|.++|+++++|.|..|...
T Consensus       120 Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~  152 (160)
T PRK04860        120 YRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGET  152 (160)
T ss_pred             EEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCce
Confidence            3687 987   77889999999999999999999554

>TIGR03491 RecB family nuclease, putative, TM0106 family

Probab=89.81  E-value=4.5  Score=39.86  Aligned_cols=90  Identities=19%  Similarity=0.259  Sum_probs=56.7

Q ss_pred             ChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-----CcCCC-------CceeecccccC-CcccCC
Q 018586          200 PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-----MNYPD-------HMLRDTAKYRP-LMKTNL  266 (353)
Q Consensus       200 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-----~~~~~-------~~~~Dt~~l~~-~~~~~~  266 (353)
                      ...+++.+|.+|+.+.           .+..|+.|| .+....|+     ...+.       ..++|.....+ .+....
T Consensus       327 ~E~~~~~~f~~~l~~~-----------~~~~i~hY~-~~e~~~l~rla~~~~~~~~~~~~l~~~~vDL~~~vr~~~~~p~  394 (457)
T TIGR03491       327 TEELAWQQFLQLLQSY-----------PDAPIYHYG-ETEKDSLRRLAKRYGTPEAEIEELLKRFVDIHTIVRRSWILPI  394 (457)
T ss_pred             HHHHHHHHHHHHHHHC-----------CCCeEEeeC-HHHHHHHHHHHHHcCCCHHHHHHHHHHheehHHHHHhhEECCC
Confidence            3566888889988443           445888888 78888877     12221       15678776543 233344


Q ss_pred             CCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHh
Q 018586          267 VSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRR  306 (353)
Q Consensus       267 ~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~  306 (353)
                      ++|+|+.++..+ |....    ....|.-.++..|..+..
T Consensus       395 ~sysLK~v~~~l-g~~~~----~~~~~G~~ai~~y~~~~~  429 (457)
T TIGR03491       395 ESYSLKSIARWL-GFEWR----QKEASGAKSLLWYRQWKK  429 (457)
T ss_pred             CCCCHHHHHHHh-CcccC----CCCCCHHHHHHHHHHHHH
Confidence            789999999888 77644    223444455555655543

Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=88.86  E-value=0.25  Score=26.80  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=16.9

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|+.|+.+.. .+.|..|++.|+
T Consensus         2 ~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    2 KCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             E-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCcCC-HHHHHHHHHhhC
Confidence            4888998887 889999998865

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=88.58  E-value=0.068  Score=30.15  Aligned_cols=20  Identities=30%  Similarity=0.695  Sum_probs=15.0

Q ss_pred             cccccccccCchhHHHHHHH
Q 018586           81 CNLCMNIFDSPSSLIKHKEA  100 (353)
Q Consensus        81 C~~C~k~F~~~s~L~~H~~~  100 (353)
                      |..|++.|.+...+..|+++
T Consensus         4 C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    4 CDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             BTTTTBBBSSHHHHHCCTTS
T ss_pred             cccCCCCcCCHHHHHHHHcc
Confidence            77788888888777777653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=88.04  E-value=0.3  Score=27.34  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=15.3

Q ss_pred             CCCCCCcccccc--cccccccccc
Q 018586           68 SKAHCSGIFSDR--GCNLCMNIFD   89 (353)
Q Consensus        68 ~c~~Cgk~f~~~--~C~~C~k~F~   89 (353)
                      .|+.|++.-+..  .|+.||..|.
T Consensus         2 ~CP~C~~~V~~~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPESAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchhhcCcCCCCCCCCc
Confidence            467777666543  4888888875

Several members are annotated as putative helicases.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=87.50  E-value=0.43  Score=25.86  Aligned_cols=21  Identities=33%  Similarity=0.513  Sum_probs=16.6

Q ss_pred             eeeccccccccChHHHHHHHhh
Q 018586           15 HKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      |+|+.|+.... +..|.+|++.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHh
Confidence            78999998887 8899999986

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=86.73  E-value=0.3  Score=36.68  Aligned_cols=20  Identities=40%  Similarity=0.753  Sum_probs=17.6

Q ss_pred             CccccCcccCCChHHHHhcc
Q 018586           44 PKCAVCQKLSKSFESLREHL   63 (353)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~   63 (353)
                      ..|..|++.|.+...+..|+
T Consensus        51 ~~C~~C~~~f~s~~~l~~Hm   70 (100)
T PF12756_consen   51 FRCPYCNKTFRSREALQEHM   70 (100)
T ss_dssp             EEBSSSS-EESSHHHHHHHH
T ss_pred             CCCCccCCCCcCHHHHHHHH
Confidence            38999999999999999999

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=85.38  E-value=0.2  Score=51.66  Aligned_cols=75  Identities=17%  Similarity=0.193  Sum_probs=45.8

Q ss_pred             CCCCCccccccccccccccccC---chhHHHHHHHhcCCCCCCcccCCcchhhhhhhcc----ccccccccCCCceeecc
Q 018586           69 KAHCSGIFSDRGCNLCMNIFDS---PSSLIKHKEACSLSAPVPFEKTLSNAESQKKISG----AIDEKRTCRGPKAVAMD  141 (353)
Q Consensus        69 c~~Cgk~f~~~~C~~C~k~F~~---~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~~~~----~~~e~~~~~~~~~~~~D  141 (353)
                      |..||..+   .|+.|+..++-   ...|.=|..-|....|..||+|++. .-...=.+    ..+-.+-++..+++.+|
T Consensus       438 C~~Cg~v~---~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~-~L~~~G~GterieeeL~~~FP~~rv~r~d  513 (730)
T COG1198         438 CRDCGYIA---ECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE-HLRAVGPGTERIEEELKRLFPGARIIRID  513 (730)
T ss_pred             cccCCCcc---cCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC-eeEEecccHHHHHHHHHHHCCCCcEEEEc
Confidence            88888777   68888765432   2222333333456788899999866 11111111    11223457888999999


Q ss_pred             Cccccc
Q 018586          142 CEMVGG  147 (353)
Q Consensus       142 ~Ettg~  147 (353)
                      .++|..
T Consensus       514 ~Dtt~~  519 (730)
T COG1198         514 SDTTRR  519 (730)
T ss_pred             cccccc
Confidence            999974

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=85.35  E-value=0.29  Score=27.48  Aligned_cols=22  Identities=41%  Similarity=0.694  Sum_probs=16.3

Q ss_pred             eeeccccccccChHHHHHHHhh
Q 018586           15 HKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      |-|..|++.|.....+..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5688888888887777777653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=83.63  E-value=0.54  Score=36.39  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=16.3

Q ss_pred             CCCCCCCcccccc-----ccccccccccCc
Q 018586           67 LSKAHCSGIFSDR-----GCNLCMNIFDSP   91 (353)
Q Consensus        67 ~~c~~Cgk~f~~~-----~C~~C~k~F~~~   91 (353)
                      +.|+.||++|..-     .||.||..|.-.
T Consensus        10 R~Cp~CG~kFYDLnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence            3477777777643     377777777665

The function of members of this family is unknown.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=82.64  E-value=1  Score=26.75  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.0

Q ss_pred             ceeeccccccccChHHHHHHHhh
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      +|.|+.|++.|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            68899999999998888888864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=82.51  E-value=0.57  Score=42.67  Aligned_cols=57  Identities=28%  Similarity=0.562  Sum_probs=36.7

Q ss_pred             CCC-cccc--CcccCCChHHHHhcc-CC-------CCCCCCCCccc----cccccccccccccCchhHHHHH
Q 018586           42 HQP-KCAV--CQKLSKSFESLREHL-TG-------PLSKAHCSGIF----SDRGCNLCMNIFDSPSSLIKHK   98 (353)
Q Consensus        42 ~~~-~C~~--C~~~f~~~~~l~~H~-~~-------~~~c~~Cgk~f----~~~~C~~C~k~F~~~s~L~~H~   98 (353)
                      ++| +|..  |.+.+.....|+.|+ .|       +.|-++--..|    ....|+.|+|.|..-..|+-|+
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            356 7754  888888888888887 22       22233333445    2335888888888888887775

>TIGR00592 pol2 DNA polymerase (pol2)

Probab=82.43  E-value=11  Score=41.76  Aligned_cols=106  Identities=14%  Similarity=0.226  Sum_probs=69.2

Q ss_pred             cCCCCHhhhcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhc-----CcCC------------
Q 018586          187 VTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR-----MNYP------------  248 (353)
Q Consensus       187 ~~GIt~e~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~-----~~~~------------  248 (353)
                      .-|+.+..|..-.+-.+.+..++.++.+.+           ..+++||| .+||+.+|-     +..+            
T Consensus       570 ~~~~~~~~L~~~~sEr~lL~~fl~~~~~~D-----------PDii~g~n~~qfdlkvl~nR~~~l~i~~~~~~Gr~~~~~  638 (1172)
T TIGR00592       570 FPGKKPSLVEDLATERALIKKFMAKVKKID-----------PDEIVGHDYQQRALKVLANRINDLKIPTWSKIGRLRRSP  638 (1172)
T ss_pred             hhccCCcEEEEecCHHHHHHHHHHHHHhcC-----------CCEEEEEcccCccHHHHHHHHHHcCCCcccccCccccCC
Confidence            345556666777788888888888885443           35999999 456888765     2222            


Q ss_pred             -----------CCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCC------------------CCChHHHHHHHHH
Q 018586          249 -----------DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG------------------VHDPYEDCVSVMR  299 (353)
Q Consensus       249 -----------~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~------------------~H~Al~Da~~t~~  299 (353)
                                 ...++|+..+++... ...+|+|.+++..+||..-..-                  ....+.||..+++
T Consensus       639 ~~~~~~~~~~~Grl~~D~~~~~k~~~-~~~sy~L~~v~~~~L~~~k~~~~~~~i~~~~~~~~~~~~~~~y~~~Da~l~~~  717 (1172)
T TIGR00592       639 KFGRRFGERTCGRMICDVEISAKELI-RCKSYDLSELVQQILKTERKVIPIDNINNMYSESSSLTYLLEHTWKDAMFILQ  717 (1172)
T ss_pred             CccccccceECCEEEEEHHHHHHHHh-CcCCCCHHHHHHHHhCCCCcccCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence                       123466666665544 3678999999999998642110                  1123567777777


Q ss_pred             HHHHH
Q 018586          300 LYKRF  304 (353)
Q Consensus       300 l~~~~  304 (353)
                      |+.++
T Consensus       718 L~~~l  722 (1172)
T TIGR00592       718 IMCEL  722 (1172)
T ss_pred             HHHHH
Confidence            76654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	353
1wlj_A	189	Human Isg20 Length = 189		2e-15

>pdb|1WLJ|A Chain A, Human Isg20 Length = 189

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 21/173 (12%)
Query: 136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 195
           + VAMDCEMVG G +    L AR  LV+    V++  +++P+  +T+YR  V+G+T + +
Sbjct: 6   EVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHM 64
Query: 196 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 255
             A P    + +IL++L              K +L+VGH L+HD  +L+ +   + + DT
Sbjct: 65  VGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMSGYTIYDT 110
Query: 256 AKYRPLMKTNLVSH----SLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYK 302
           +  R L +   + H    SL+ L+   L   IQ+ +  H   ED  + M LY+
Sbjct: 111 STDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQ 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
1wlj_A	189	Interferon stimulated gene 20KDA; exoribonuclease,	4e-61
1w0h_A	204	3'-5' exonuclease ERI1; nuclease domain, hydrolase	3e-10
1zbh_A	299	3'-5' exonuclease ERI1; histone mRNA 3'-END-specif	1e-09
1zbu_A	349	ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase;	6e-09
2xri_A	224	ERI1 exoribonuclease 3; hydrolase, metal binding;	4e-08
2p1j_A	186	POLIII, DNA polymerase III POLC-type; structural g	2e-05
3cg7_A	308	CRN-4, cell death-related nuclease 4; hydrolase, a	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1y97_A	238	Three prime repair exonuclease 2; TREX2, hydrolase	4e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	5e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	7e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	9e-04

>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Length = 189

 Score =  193 bits (492), Expect = 4e-61
 Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 21/184 (11%)

Query: 133 RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTE 192
              + VAMDCEMVG G +    L AR  LV+    V++  +++P+  +T+YR  V+G+T 
Sbjct: 3   GSREVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTP 61

Query: 193 EDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHML 252
           + +  A P    + +IL++L              K +L+VGH L+HD  +L+ +   + +
Sbjct: 62  QHMVGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMSGYTI 107

Query: 253 RDTAKYRPLMKTNLVSH----SLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYKRFRR 306
            DT+  R L +   + H    SL+ L+   L   IQ+ +  H   ED  + M LY+  +R
Sbjct: 108 YDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQR 167

Query: 307 QDHQ 310
              +
Sbjct: 168 IRAR 171

>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Length = 204

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 22/169 (13%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
           V L++     I   F  YV+P++   ++++   +TG+T++ +  A    +V  K+++ + 
Sbjct: 38  VVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMK 97

Query: 214 NGESTGRLMLDDGKARLLVGHG-------LEHDLDSLRMNYPDHMLR--DTAK-YRPLMK 263
             E      L       L+  G       L       R+ YP    +  +  K Y    K
Sbjct: 98  LKE------LGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYK 151

Query: 264 TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVE 312
                  L  +    LG D     H   +D  ++ R+  R  +   ++ 
Sbjct: 152 VPRSQTKLTIMLE-KLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELR 199

>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Length = 299

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
           V L++     I   F  YV+P++   ++++   +TG+T++ +  A    +V  K+++++ 
Sbjct: 106 VVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMK 165

Query: 214 NGESTGRLMLDDGKARLLVGHG-------LEHDLDSLRMNYPDHMLR--DTAK-YRPLMK 263
             E      L       L+  G       L       R+ YP    +  +  K Y    K
Sbjct: 166 LKE------LGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYK 219

Query: 264 TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVE 312
                  L  +    LG D     +   +D  ++ R+  R  +   ++ 
Sbjct: 220 VPRSQTKLTIMLE-KLGMDYDGRPNCGLDDSKNIARIAVRMLQDGCELR 267

>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Length = 349

 Score = 55.8 bits (134), Expect = 6e-09
 Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
           V L++     I   F  YV+P++   ++++   +TG+T++ +  A    +V  K+++++ 
Sbjct: 156 VVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMK 215

Query: 214 NGESTGRLMLDDGKARLLVGHG-------LEHDLDSLRMNYPDHMLR--DTAK-YRPLMK 263
             E      L       L+  G       L       R+ YP    +  +  K Y    K
Sbjct: 216 LKE------LGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYK 269

Query: 264 TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVE 312
                  L  +    LG D     H   +D  ++ R+  R  +   ++ 
Sbjct: 270 VPRSQTKLTIMLE-KLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELR 317

>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Length = 224

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 20/169 (11%)

Query: 159 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 213
           +  ++     I   FH YVQP +   +T +  E+TG+ +  +     L++V +++ E + 
Sbjct: 57  ILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMA 116

Query: 214 NGESTGRLMLDDGKARLLVGHG-------LEHDLDSLRMNYPDHMLR--DTAKYRPLMKT 264
                   +LD     + V  G       L      L +   D+  +  +  K       
Sbjct: 117 -----KEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMG 171

Query: 265 NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEE 313
               + L  + +  L        H   +DC ++  + K    +    ++
Sbjct: 172 CWPKNGLLDMNK-GLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQ 219

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Length = 186

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 26/125 (20%)

Query: 164 EDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRL 221
           +   ++  +HT ++P   ++    E+TG+T+E ++N   ++EV  + L  L +       
Sbjct: 40  QGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGFLED------- 92

Query: 222 MLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR-------DTAKY-RPLMKTNLVSHSLKY 273
                   ++V H    D   LR+     M         DT    + L+K    S+SL  
Sbjct: 93  -------SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLR--SYSLDS 143

Query: 274 LTRTY 278
           +    
Sbjct: 144 VVEKL 148

>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Length = 308

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 14/162 (8%)

Query: 161 LVDEDENVIFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGEST 218
           + ++     F+ YV+P L   +T    + TG+ +  I  A     V ++  + L      
Sbjct: 56  IREDIS---FNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFDVVYEQFQQWLITLGLE 112

Query: 219 GRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR--DTAKY------RPLMKTNLVSHS 270
                    +R  +    ++ +    +  P    +  +  K       R   K    + +
Sbjct: 113 EGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTN 172

Query: 271 LKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVE 312
           +  +   Y         HD  +DC+++  + +R      +V 
Sbjct: 173 IGKMNE-YYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVT 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 47/410 (11%), Positives = 114/410 (27%), Gaps = 115/410 (28%)

Query: 22  KQFKRKDHLIEHMKISYHSVHQPKCAVC---QKLSKSFESLREHLTGPL-SKAHCSGI-- 75
           K     + ++E ++   + +     +       +     S++  L   L SK + + +  
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 76  ------------FSDRGCNLCM-----NIFDSPSSLI-KHKEACSLSAPVPFEKTLSNAE 117
                       F +  C + +      + D  S+    H              TL+  E
Sbjct: 250 LLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISL------DHHSMTLTPDE 302

Query: 118 SQ----KKISGAIDE--KRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIF 170
            +    K +     +  +      P+ +++  E +  G   T D    V   D+   +I 
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHV-NCDKLTTIIE 360

Query: 171 HTYVQPQLPVTNYR--YEVTGLTEEDIKNAMPLKEVKDKILEIL--NNGESTGRLMLDD- 225
            +     L    YR  ++   +             +   +L ++  +  +S   ++++  
Sbjct: 361 SSL--NVLEPAEYRKMFDRLSVFPPSAH-------IPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 226 GKARLLVGHGLE-----HDLD-SLRMNYPD----H-MLRDTAKYRPL------------- 261
            K  L+     E       +   L++   +    H  + D   Y                
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYL 469

Query: 262 -----------MKTNLVSHSLKYLTRTYLGYD-IQSGV-HD--------PYEDCVSVMRL 300
                      +K       +      +L +  ++  + HD           + +  ++ 
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 301 YKRF-RRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRC 349
           YK +    D + E +                +    P     +  S Y  
Sbjct: 530 YKPYICDNDPKYERL-------------VNAILDFLPKIEENLICSKYTD 566

>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Length = 238

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 27/186 (14%), Positives = 51/186 (27%), Gaps = 31/186 (16%)

Query: 137 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIK 196
             A+    +    +          ++D+         + P+ P T    E+TGL+ E + 
Sbjct: 34  LFAVHRSSLENPEHDESGALVLPRVLDK-----LTLCMCPERPFTAKASEITGLSSEGLA 88

Query: 197 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGH-------G-LEHDLDSLRMNYP 248
                      ++  L         +        LV H         L  +L  L    P
Sbjct: 89  RC-RKAGFDGAVVRTLQ------AFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLP 141

Query: 249 DHML-RDT---------AKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVM 298
              +  DT         A            +SL  L   Y   +  +  H    D  +++
Sbjct: 142 RDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPSAA-HSAEGDVHTLL 200

Query: 299 RLYKRF 304
            ++   
Sbjct: 201 LIFLHR 206

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSF---ESLREHL 63
          ++C  C + +    +   H   S+    +   C  C    K F   +++  H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFC---FKEFTRKDNMTAHV 60

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 5/85 (5%)

Query: 14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHC 72
          + +C  C   +     L  HM  + H      +         S    R  L     K   
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME-GKEDA 77

Query: 73 SGIFSDRGCNLCMNIFDSPSSLIKH 97
            +     C  C + F+S   L  H
Sbjct: 78 QKVLK---CMYCGHSFESLQDLSVH 99

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 20/90 (22%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TG--PLS 68
          HKC  C K F RKD L  HM+   H+  +P KC  C   +    SL +HL   +   P  
Sbjct: 9  HKCEVCGKCFSRKDKLKTHMRC--HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66

Query: 69 KAHCSGIFSDRGCNLCMNIFDSPSSLIKHK 98
                      C +C     + S L  H 
Sbjct: 67 ------------CQICPYASRNSSQLTVHL 84

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 14/87 (16%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKA 70
            C  C K F+   HL  H     HS  +P  C VC    K  + +  H+    G + K 
Sbjct: 8  VACEICGKIFRDVYHLNRHKLS--HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65

Query: 71 HCSGIFSDRGCNLCMNIFDSPSSLIKH 97
          +         C  C   F  P  L  H
Sbjct: 66 Y--------ICQSCGKGFSRPDHLNGH 84

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 8/54 (14%)

Query: 15 HKCVACYKQFKRKDHLIEHMKI-SYHSVHQP-KCAVCQKLSKSFE---SLREHL 63
           +C  C    ++K  L  H +  +         C  C    K FE   S+  H 
Sbjct: 8  LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFC---GKRFEKPDSVAAHR 58

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK 51
          + C +C K F R DHL  H+K   H+  +P KC V   
Sbjct: 13 YICQSCGKGFSRPDHLNGHIK-QVHTSERPHKCQVWVS 49

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 37.1 bits (87), Expect = 9e-04
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 9/52 (17%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSF---ESLREH 62
           +C  C + F R DHL  H++   H+  +P  C +C    + F   +  + H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDIC---GRKFARSDERKRH 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	353
1wlj_A	189	Interferon stimulated gene 20KDA; exoribonuclease,	100.0
2p1j_A	186	POLIII, DNA polymerase III POLC-type; structural g	99.96
2gui_A	194	DNA polymerase III epsilon subunit; DNA polymerase	99.96
1w0h_A	204	3'-5' exonuclease ERI1; nuclease domain, hydrolase	99.95
3mxm_B	242	Three prime repair exonuclease 1; RNAse H-like fol	99.94
3cg7_A	308	CRN-4, cell death-related nuclease 4; hydrolase, a	99.94
1zbh_A	299	3'-5' exonuclease ERI1; histone mRNA 3'-END-specif	99.94
2xri_A	224	ERI1 exoribonuclease 3; hydrolase, metal binding;	99.93
3u3y_B	314	Three prime repair exonuclease 1; RNAse H fold, 3'	99.93
1y97_A	238	Three prime repair exonuclease 2; TREX2, hydrolase	99.93
1zbu_A	349	ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase;	99.93
2f96_A	224	Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas	99.93
2igi_A	180	Oligoribonuclease; RNAse, exoribonuclease, exonucl	99.91
3v9w_A	235	Ribonuclease T; DEDD nucleases family, EXO-nucleas	99.9
3tr8_A	186	Oligoribonuclease; transcription, hydrolase; 2.50A	99.9
2gbz_A	194	Oligoribonuclease; ORN, deddh, structural genomics	99.9
2qxf_A	482	Exodeoxyribonuclease I; alpha-beta domain, DNAQ su	99.88
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.7
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.69
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.68
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.62
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.58
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.57
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.57
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.57
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.53
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.53
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.52
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.5
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.5
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.48
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.47
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.45
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.44
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.42
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.36
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.31
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.28
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.26
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.26
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.24
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.24
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.22
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.18
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.16
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.14
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.12
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.11
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.11
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.09
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.03
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.02
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.01
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.98
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.97
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.97
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.95
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	98.93
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.93
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	98.93
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	98.91
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	98.88
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.87
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.87
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	98.85
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.85
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.85
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.85
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.82
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	98.82
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.81
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	98.81
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.81
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.81
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.81
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.8
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.8
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.79
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.79
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	98.79
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.78
4hec_A	190	Putative uncharacterized protein; ssgcid, structur	98.78
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.78
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.78
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.78
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.78
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.77
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.77
2kfn_A	605	Klenow fragment of DNA polymerase I; complex (poly	98.77
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	98.77
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.77
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.77
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.76
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.76
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.76
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	98.76
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.76
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.76
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.75
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.75
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.75
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.74
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	98.74
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.73
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.73
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.73
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.72
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.72
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.72
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.71
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.71
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.71
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.7
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.7
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.7
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.68
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.68
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.68
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.64
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.64
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.6
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.6
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.6
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.59
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.59
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.59
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.59
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.59
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.58
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.58
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.58
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.57
1x9m_A	698	DNA polymerase; DNA ploymerase, N-2-acetylaminoflu	98.57
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.57
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.56
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.56
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.56
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.56
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.56
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.56
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.56
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.56
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.56
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.55
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.55
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.55
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.54
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	98.54
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	98.54
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.54
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.54
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.53
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.53
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.53
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.53
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.53
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.53
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.53
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.52
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.52
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.52
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.51
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.51
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.51
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.51
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.5
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.5
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.49
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.48
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.48
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	98.47
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.46
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.45
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.43
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.4
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.4
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.4
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.4
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.39
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.39
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.39
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.37
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.37
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.37
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.37
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.36
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.36
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.36
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.36
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.36
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.36
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.36
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.36
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.36
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.35
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.34
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.34
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.34
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.33
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.33
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.33
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.33
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.33
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.32
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.32
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.32
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.32
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.32
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.32
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.31
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.31
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.31
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.31
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.29
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.29
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.29
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.29
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.28
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.28
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.28
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.28
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.27
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.27
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.27
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.26
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.26
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.26
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.26
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.26
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.26
4gmj_B	285	CCR4-NOT transcription complex subunit 7; mRNA dec	98.25
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.25
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.24
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.24
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.24
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.24
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.24
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.23
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.23
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.23
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.23
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.23
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.22
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.22
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.22
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.22
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.21
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.21
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.21
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.21
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.21
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.2
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.2
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.2
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.2
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.19
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.19
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.19
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.18
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.18
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.18
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.18
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.17
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.17
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.17
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.17
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.17
4dfk_A	540	DNA polymerase I, thermostable; DNA polymerase, tr	98.16
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.16
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.16
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.16
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.16
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.16
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.15
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.15
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.15
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.14
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.13
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.13
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.13
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.11
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.11
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.1
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.1
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.09
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.08
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.07
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.06
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.06
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.05
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.02
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.02
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.01
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.01
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.99
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.98
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.96
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	97.96
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	97.96
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	97.95
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	97.92
3saf_A	428	Exosome component 10; exoribonuclease, RNA exosome	97.88
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	97.87
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.84
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.8
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.79
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.78
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	97.77
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.76
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.75
2epa_A	72	Krueppel-like factor 10; transforming growth facto	97.73
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.72
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.72
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.68
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.66
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.65
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.65
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	97.65
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.65
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.63
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.78
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.61
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.61
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.61
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.61
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.6
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.6
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.75
2d5r_A	252	CCR4-NOT transcription complex subunit 7; poly(A)	97.59
2e6m_A	208	Werner syndrome ATP-dependent helicase homolog; AP	97.56
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.56
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	97.54
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.54
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	97.53
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.53
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.53
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	97.53
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.53
2p51_A	333	SPCC18.06C protein; DEDD nuclease fold, hydrolase,	97.48
1noy_A	388	Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas	97.48
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.48
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.6
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.47
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.46
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.58
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.44
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.42
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.41
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.38
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.36
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.44
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.32
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.31
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.3
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.3
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.3
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.29
1qht_A	775	Protein (DNA polymerase); archaea, hyperthermostab	97.27
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	97.25
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.23
1uoc_A	289	POP2; hydrolase, DEDD nuclease, mRNA degradation,	97.23
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.22
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.22
1vk0_A	206	Hypothetical protein; homohexamer, AT5G06450, stru	97.22
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.13
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.12
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.08
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.07
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.11
3pv8_A	592	DNA polymerase I; DNA polymerase I, protein-DNA co	96.99
1yt3_A	375	Ribonuclease D, RNAse D; exoribonuclease, exonucle	96.86
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.82
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	96.81
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.79
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	96.78
1s5j_A	847	DNA polymerase I; replication, disulfide bonds, tr	96.69
3qex_A	903	DNA polymerase, GP43; difluorotoluene nucleoside;	96.66
3iay_A	919	DNA polymerase delta catalytic subunit; protein-DN	96.66
2a1r_A	430	Poly(A)-specific ribonuclease PARN; DEDD, nuclease	96.65
3d45_A	507	Poly(A)-specific ribonuclease PARN; CAP analogue,	96.64
2hbj_A	410	Exosome complex exonuclease RRP6; RNA metabolism,	96.51
2gv9_A	1193	DNA polymerase; polymerase alpha fold, transferase	96.36
3k59_A	786	POL II, DNA polymerase II; protein-DNA complex, DN	96.1
3cym_A	440	Uncharacterized protein BAD_0989; structural genom	95.84
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.41
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	92.05
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	91.74
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	88.29
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	85.22
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	84.95
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	82.28
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	81.86

>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5

Probab=100.00  E-value=1.8e-32  Score=235.88  Aligned_cols=163  Identities=33%  Similarity=0.532  Sum_probs=139.2

Q ss_pred             CCCceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHH
Q 018586          133 RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  212 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~  212 (353)
                      ...+++++|+||||+++.+..++ +++.+++.+|+++|++||+|..+|+++++++||||+++|+++|++++|+++|.+|+
T Consensus         3 ~~~~~vviD~ETTGl~~~~~~~i-iei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l   81 (189)
T 1wlj_A            3 GSREVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLL   81 (189)
T ss_dssp             ---CEEEEEEEEEEETTTTEEEE-EEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeECcCcCCCCCceE-EEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHH
Confidence            34579999999999976654444 57777888999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCCCCceeecccccCC----cccCCCCCcHHHHHHHHhCCcCCCC--
Q 018586          213 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPL----MKTNLVSHSLKYLTRTYLGYDIQSG--  286 (353)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~----~~~~~~~~~L~~l~~~~~~~~~~~~--  286 (353)
                                    ++.+|||||+.||+.||+..+|...++||+.++..    ..|...+++|+.|++.++|++++.+  
T Consensus        82 --------------~~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~  147 (189)
T 1wlj_A           82 --------------KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLL  147 (189)
T ss_dssp             --------------TTSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTT
T ss_pred             --------------CCCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCC
Confidence                          78999999999999999998988789999987532    2344578999999999669998765  


Q ss_pred             CCChHHHHHHHHHHHHHHHhchhh
Q 018586          287 VHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       287 ~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      +|+|++||++|++||.++.+.++.
T Consensus       148 ~H~Al~Da~ata~l~~~l~~~~~~  171 (189)
T 1wlj_A          148 GHSSVEDARATMELYQISQRIRAR  171 (189)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998766

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}

Probab=99.96  E-value=3.5e-29  Score=214.81  Aligned_cols=160  Identities=22%  Similarity=0.322  Sum_probs=133.5

Q ss_pred             ccCCCceeeccCccccccC--CCCccceeEEeeecCCCCeE--EeeeccCCCCccccccccCCCCHhhhcCCCChHHHHH
Q 018586          131 TCRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~~--~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~  206 (353)
                      +....+++++|+||||+++  +.++++ +.|.+  .+|+++  |+.+|+|..+++++++++||||+++|+++|++.+|++
T Consensus         8 ~l~~~~~v~iD~ETTGl~~~~~~IieI-g~v~~--~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~   84 (186)
T 2p1j_A            8 TFGDATFVVLDFETTGLDPQVDEIIEI-GAVKI--QGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLP   84 (186)
T ss_dssp             -----CEEEEEEEESCSCTTTCCEEEE-EEEEE--ETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHH
T ss_pred             cCcCCCEEEEEEECCCCCCCCCeEEEE-EEEEE--ECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHH
Confidence            3455689999999999864  456666 56666  367765  9999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-------CcCCCCceeecccccCCcccCCCCCcHHHHHHHHh
Q 018586          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYL  279 (353)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~  279 (353)
                      +|.+|+              ++.+|||||+.||+.||+       +..+...++||+.+++.+. ...+++|+.|++.| 
T Consensus        85 ~~~~~l--------------~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~~~~~L~~l~~~~-  148 (186)
T 2p1j_A           85 EFLGFL--------------EDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KLRSYSLDSVVEKL-  148 (186)
T ss_dssp             HHHHHS--------------SSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CCSCCSHHHHHHHT-
T ss_pred             HHHHHH--------------CCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hcCCCCHHHHHHHc-
Confidence            999999              788999999999999997       3344567899999988776 56789999999987 


Q ss_pred             CCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          280 GYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       280 ~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      |++.. ++|+|++||++|++||.++.+++.+
T Consensus       149 gi~~~-~~H~Al~Da~~t~~l~~~l~~~~~~  178 (186)
T 2p1j_A          149 GLGPF-RHHRALDDARVTAQVFLRFVEMMKK  178 (186)
T ss_dssp             TCCST-TCCHHHHHHHHHHHHHHHHTTCC--
T ss_pred             CCCCC-CCcCHHHHHHHHHHHHHHHHHHHHh
Confidence            99854 5899999999999999999887554

>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*

Probab=99.96  E-value=7.9e-29  Score=214.13  Aligned_cols=158  Identities=20%  Similarity=0.323  Sum_probs=132.3

Q ss_pred             CCceeeccCccccccC-------CCCccceeEEeeecCCCCe---EEeeeccCCCCccccccccCCCCHhhhcCCCChHH
Q 018586          134 GPKAVAMDCEMVGGGS-------NGTLDLCARVCLVDEDENV---IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKE  203 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~-------~~~~~il~~v~ivd~~g~~---~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~  203 (353)
                      .++++++|+||||+++       +.++++ +.|.+.  +|.+   .|+.+|+|..+++++++++||||+++|+++|++.+
T Consensus         8 ~~~~vviD~ETTGl~~~~~~~~~~~Iiei-g~v~~~--~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~   84 (194)
T 2gui_A            8 ITRQIVLDTETTGMNQIGAHYEGHKIIEI-GAVEVV--NRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAE   84 (194)
T ss_dssp             CCEEEEEEEEESCCCSSSSTTTTCCEEEE-EEEEEE--TTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHH
T ss_pred             cCCEEEEEeeCCCCCCcccCCCCCEEEEE-EEEEEE--CCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCCHHH
Confidence            3679999999999876       456666 666663  4554   48999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-------CcCCC----CceeecccccCCcccCCCCCcHH
Q 018586          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPD----HMLRDTAKYRPLMKTNLVSHSLK  272 (353)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~----~~~~Dt~~l~~~~~~~~~~~~L~  272 (353)
                      |+++|.+|+              ++.+|||||+.||+.||+       +..|.    ..++||+.+++.++|.. .++|+
T Consensus        85 v~~~~~~~l--------------~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~-~~~L~  149 (194)
T 2gui_A           85 VADEFMDYI--------------RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK-RNSLD  149 (194)
T ss_dssp             HHHHHHHHH--------------TTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS-CCSHH
T ss_pred             HHHHHHHHH--------------CCCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC-CCCHH
Confidence            999999999              788999999999999998       23332    47899999988877754 57999


Q ss_pred             HHHHHHhCCcCCC-CCCChHHHHHHHHHHHHHHHhchhh
Q 018586          273 YLTRTYLGYDIQS-GVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       273 ~l~~~~~~~~~~~-~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      .|++.| |++... .+|+|++||++|++||.++.+++..
T Consensus       150 ~l~~~~-gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~  187 (194)
T 2gui_A          150 ALCARY-EIDNSKRTLHGALLDAQILAEVYLAMTGGQTS  187 (194)
T ss_dssp             HHHHHT-TCCCTTCSSCCHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHc-CcCCCCCCCCChHHHHHHHHHHHHHHHhccch
Confidence            999987 998665 4899999999999999999988654

>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5

Probab=99.95  E-value=4.2e-28  Score=211.24  Aligned_cols=168  Identities=17%  Similarity=0.257  Sum_probs=136.0

Q ss_pred             CCceeeccCccccccC------CCCccceeEEeeecCCCCeE--EeeeccCCC--CccccccccCCCCHhhhcCCCChHH
Q 018586          134 GPKAVAMDCEMVGGGS------NGTLDLCARVCLVDEDENVI--FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKE  203 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~------~~~~~il~~v~ivd~~g~~~--~~~lv~P~~--~i~~~~~~~~GIt~e~l~~~~~~~~  203 (353)
                      ...++++|+||||+++      +.++|+ ++|.+...+|+++  |+.+|+|..  +++++++++||||+++|+++|++.+
T Consensus         9 ~~~~vviD~ETTGl~~~~~~~~~~Iiei-gav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~   87 (204)
T 1w0h_A            9 YDYICIIDFEATCEEGNPPEFVHEIIEF-PVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ   87 (204)
T ss_dssp             SSEEEECCCEECCCTTCCTTSCCCEEEE-EEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHH
T ss_pred             cCEEEEEEEecCCcCCCCCCCCCcEEEE-EEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHH
Confidence            4569999999999864      456666 5555532478886  999999998  8999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHH-Hhc-------CcCCCC--ceeecccccCCcccC-CCCCcHH
Q 018586          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLR-------MNYPDH--MLRDTAKYRPLMKTN-LVSHSLK  272 (353)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~-~l~-------~~~~~~--~~~Dt~~l~~~~~~~-~~~~~L~  272 (353)
                      |+.+|.+|+.+...       +..+.++||||+.||+. ||+       +..|..  .++||..+++.+++. ...++|.
T Consensus        88 v~~~~~~~l~~~~~-------~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~  160 (204)
T 1w0h_A           88 VLKKVIDWMKLKEL-------GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLT  160 (204)
T ss_dssp             HHHHHHHHHHHTTB-------TTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHH
T ss_pred             HHHHHHHHHHhcCC-------CCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHH
Confidence            99999999943210       01334699999999997 997       344543  789999998877664 2358999


Q ss_pred             HHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          273 YLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       273 ~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      .|++.| |++..+.+|+|++||++|++||.++.+++..
T Consensus       161 ~l~~~~-gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~~  197 (204)
T 1w0h_A          161 IMLEKL-GMDYDGRPHCGLDDSKNIARIAVRMLQDGCE  197 (204)
T ss_dssp             HHHHHT-TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHc-CCCCCCCccCcHHHHHHHHHHHHHHHHCCCe
Confidence            999998 9996655899999999999999999988644

>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A

Probab=99.94  E-value=2.2e-27  Score=211.57  Aligned_cols=161  Identities=15%  Similarity=0.124  Sum_probs=132.3

Q ss_pred             CCceeeccCcccccc--CCCCccceeEEeeecCC--------C---------Ce--EEeeeccCCCCccccccccCCCCH
Q 018586          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDED--------E---------NV--IFHTYVQPQLPVTNYRYEVTGLTE  192 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~~--------g---------~~--~~~~lv~P~~~i~~~~~~~~GIt~  192 (353)
                      ...|+++|+||||++  .++++|+ +.|.+.+..        |         ++  .|+++|+|..+|++.++.+||||+
T Consensus        11 ~~~~vv~D~ETTGl~~~~d~IiEI-gav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~   89 (242)
T 3mxm_B           11 MQTLIFLDLEATGLPSSRPEVTEL-CLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK   89 (242)
T ss_dssp             CSEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred             cceEEEEEeecCCCCCCCCeeEEE-EEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCH
Confidence            456999999999986  5678888 777775431        1         33  689999999999999999999999


Q ss_pred             hhhcCC--CChH-HHHHHHHHHHhcCCCCcccccCCCCC----cEEEeccc-HHHHHHhc-------CcCC--CCceeec
Q 018586          193 EDIKNA--MPLK-EVKDKILEILNNGESTGRLMLDDGKA----RLLVGHGL-EHDLDSLR-------MNYP--DHMLRDT  255 (353)
Q Consensus       193 e~l~~~--~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~----~~lvgh~~-~~D~~~l~-------~~~~--~~~~~Dt  255 (353)
                      ++|.++  |+|. +|+++|.+|+              ++    .+|||||+ .||+.||+       +..+  ...++||
T Consensus        90 ~~l~~~g~p~~~~ev~~~~~~fl--------------~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDt  155 (242)
T 3mxm_B           90 AELEVQGRQRFDDNLAILLRAFL--------------QRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDS  155 (242)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHH--------------HTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEH
T ss_pred             HHHHhcCCCchhHHHHHHHHHHH--------------hcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeeh
Confidence            999998  8997 9999999999              55    89999995 99999998       2222  2468999


Q ss_pred             ccccCCcc--------cCCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          256 AKYRPLMK--------TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       256 ~~l~~~~~--------~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      +.+++.+.        +...+++|..|++.++|++.. ++|+|++||++|++||.++.+++..
T Consensus       156 l~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~ata~l~~~~~~~~~~  217 (242)
T 3mxm_B          156 IAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGDDLTLLSICQWKPQALLQ  217 (242)
T ss_dssp             HHHHHHHHHHHCC------CCCSHHHHHHHHHSSCCS-STTSHHHHHHHHHHHHTSSHHHHHH
T ss_pred             HHHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHHHHHHHHHH
Confidence            99887554        346789999999885599954 5999999999999999999887655

>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A

Probab=99.94  E-value=2.3e-27  Score=218.46  Aligned_cols=196  Identities=16%  Similarity=0.235  Sum_probs=152.6

Q ss_pred             CCceeeccCccccccCC-----CCccceeEEeeecCCCCeE----EeeeccCCCC--ccccccccCCCCHhhhcCCCChH
Q 018586          134 GPKAVAMDCEMVGGGSN-----GTLDLCARVCLVDEDENVI----FHTYVQPQLP--VTNYRYEVTGLTEEDIKNAMPLK  202 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~~-----~~~~il~~v~ivd~~g~~~----~~~lv~P~~~--i~~~~~~~~GIt~e~l~~~~~~~  202 (353)
                      -..++++|+||||++..     +++|+ ++|.+-..+|+++    |++||+|...  |+++++++||||+++|+++|+|.
T Consensus        18 ~~~~vviD~ETTGl~~~~d~~~eIIEI-gaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~~   96 (308)
T 3cg7_A           18 FDTLLILDFETTSDAANQDYPCEVIQF-AIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFD   96 (308)
T ss_dssp             CSEEEEEEEEECCBTTBCSCCCCEEEE-EEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBHH
T ss_pred             CCeEEEEEeecCCCCCCCCCCCCeEEE-EEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCHH
Confidence            34699999999998753     56666 5555422367763    8999999984  99999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc------HHHH-HHhc-------CcCCC--CceeecccccCCcccCC
Q 018586          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGL------EHDL-DSLR-------MNYPD--HMLRDTAKYRPLMKTNL  266 (353)
Q Consensus       203 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~------~~D~-~~l~-------~~~~~--~~~~Dt~~l~~~~~~~~  266 (353)
                      +|+++|.+|+              ++.++||||+      .||+ .||+       +..|.  .+++||+.+++.+++..
T Consensus        97 evl~~f~~~l--------------~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~  162 (308)
T 3cg7_A           97 VVYEQFQQWL--------------ITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRM  162 (308)
T ss_dssp             HHHHHHHHHH--------------HHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--------------HhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccc
Confidence            9999999999              7778899998      9999 6886       34453  46899999988776643


Q ss_pred             C------CCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhhhhhh-----cc---cCCCCCCCCcchh---
Q 018586          267 V------SHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEI-----GN---QNTTGSFDSYKYK---  329 (353)
Q Consensus       267 ~------~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~---  329 (353)
                      .      +++|..|++.+ |+++.+.+|+|++||++|++||.++.+++..+.-.     ..   ..+......|.+.   
T Consensus       163 ~~~~~~~~~~L~~l~~~~-gi~~~~~~HrAl~DA~ata~l~~~l~~~~~~~~i~~~~~~s~~~~~~~~~~~~~w~~~~~~  241 (308)
T 3cg7_A          163 GPKELSATTNIGKMNEYY-DLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTCCASWRRQPLVYNKEWRSSFMD  241 (308)
T ss_dssp             CCCCCCCCSHHHHHHHHT-TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEESCCGGGSSCCCCCTTGGGCHHH
T ss_pred             cccccccCcCHHHHHHHc-CCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCCChHHHHhhcCCccccccccCcccccchHH
Confidence            3      68999999888 99976657999999999999999999875432111     00   1111334577755   


Q ss_pred             ---HHhhcChhhhhccCCC
Q 018586          330 ---ELEKMSPNELYQISKS  345 (353)
Q Consensus       330 ---~~~~~~~~~~~~~~~~  345 (353)
                         .++++.|.++++.++.
T Consensus       242 ~~~~~~~~~p~~~~~~~~~  260 (308)
T 3cg7_A          242 AGKIFERVLPLVVTTIRAG  260 (308)
T ss_dssp             HHHHHHHHSSCEEEECCGG
T ss_pred             HHHHHHHhcccceeeeecc
Confidence               8899999999988763

>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}

Probab=99.94  E-value=9.1e-27  Score=214.09  Aligned_cols=168  Identities=16%  Similarity=0.248  Sum_probs=134.9

Q ss_pred             CCCceeeccCcccccc------CCCCccceeEEeeecCCCCeE--EeeeccCCC--CccccccccCCCCHhhhcCCCChH
Q 018586          133 RGPKAVAMDCEMVGGG------SNGTLDLCARVCLVDEDENVI--FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLK  202 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~------~~~~~~il~~v~ivd~~g~~~--~~~lv~P~~--~i~~~~~~~~GIt~e~l~~~~~~~  202 (353)
                      ....|+++|+||||++      .+.++++ ++|.+...+|+++  |+++|+|..  +|+++++.+||||+++|+++|+|.
T Consensus        76 ~~~~~vviD~ETTGl~~~~~~~~~~IIeI-gaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~  154 (299)
T 1zbh_A           76 YYDYICIIDFEATCEEGNPPEFVHEIIEF-PVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFP  154 (299)
T ss_dssp             SCSEEEEECCEECCCTTCCTTCCCCEEEE-EEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHH
T ss_pred             CCceEEEEEeecccCCCCCCCCCCceEEE-EEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHH
Confidence            3567899999999985      3567777 6666654467875  999999998  899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHH-Hhc-------CcCCC--CceeecccccCCcccCC-CCCcH
Q 018586          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLR-------MNYPD--HMLRDTAKYRPLMKTNL-VSHSL  271 (353)
Q Consensus       203 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~-~l~-------~~~~~--~~~~Dt~~l~~~~~~~~-~~~~L  271 (353)
                      +|+.+|.+|+....-       +..+.++||||+.||+. ||+       +..|.  ..++|+..+++.+++.. ..++|
T Consensus       155 evl~~f~~~l~~~~~-------~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L  227 (299)
T 1zbh_A          155 QVLKKVIDLMKLKEL-------GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKL  227 (299)
T ss_dssp             HHHHHHHHHHHHTTB-------TTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSH
T ss_pred             HHHHHHHHHHhhccc-------CCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccH
Confidence            999999999932210       01225999999999999 997       33443  36899988776654422 24899


Q ss_pred             HHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchh
Q 018586          272 KYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH  309 (353)
Q Consensus       272 ~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~  309 (353)
                      ..|+++| |++..+.+|+|++||++|++||.++.+++.
T Consensus       228 ~~l~~~~-gi~~~g~~H~Al~DA~ata~l~~~l~~~~~  264 (299)
T 1zbh_A          228 TIMLEKL-GMDYDGRPNCGLDDSKNIARIAVRMLQDGC  264 (299)
T ss_dssp             HHHHHHT-TCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHc-CCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Confidence            9999988 999665589999999999999999998754

>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}

Probab=99.93  E-value=7.7e-27  Score=206.03  Aligned_cols=157  Identities=17%  Similarity=0.261  Sum_probs=128.9

Q ss_pred             CceeeccCccccccCC----CCccceeEEeeecCCCCeE--EeeeccCCC--CccccccccCCCCHhhhcCCCChHHHHH
Q 018586          135 PKAVAMDCEMVGGGSN----GTLDLCARVCLVDEDENVI--FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKD  206 (353)
Q Consensus       135 ~~~~~~D~Ettg~~~~----~~~~il~~v~ivd~~g~~~--~~~lv~P~~--~i~~~~~~~~GIt~e~l~~~~~~~~v~~  206 (353)
                      ..++++|+||||+++.    +++|+ ++|.+.+..|+++  |+.+|+|..  +|+++++++||||+++|+++|++.+|++
T Consensus        31 ~~~vviD~ETTGl~~~~d~~~IieI-gav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~~  109 (224)
T 2xri_A           31 HYFLVLDFEATCDKPQIHPQEIIEF-PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLE  109 (224)
T ss_dssp             SEEEEECCEECCCC-CCSSCCEEEE-EEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHH
T ss_pred             CeEEEEEEEcCCCCCCCCCcceEEE-EEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHHH
Confidence            5699999999998743    56677 6776654456775  999999997  8999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcEEEeccc--------HHHHHH-hc-------CcCCC--Cceeecc---cccCCcccC
Q 018586          207 KILEILNNGESTGRLMLDDGKARLLVGHGL--------EHDLDS-LR-------MNYPD--HMLRDTA---KYRPLMKTN  265 (353)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~--------~~D~~~-l~-------~~~~~--~~~~Dt~---~l~~~~~~~  265 (353)
                      +|.+|+              ++.+|||||+        .||+.| |+       +..|.  ..++|+.   .+++...  
T Consensus       110 ~f~~~l--------------~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~--  173 (224)
T 2xri_A          110 RVDEWM--------------AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCW--  173 (224)
T ss_dssp             HHHHHH--------------HHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSC--
T ss_pred             HHHHHH--------------hhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccC--
Confidence            999999              7778999999        999997 74       34443  3689944   4444333  


Q ss_pred             CCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          266 LVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       266 ~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                       ..++|..|++.+ |++..+.+|+|++||++|++||.++.+++..
T Consensus       174 -p~~~L~~l~~~~-gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~  216 (224)
T 2xri_A          174 -PKNGLLDMNKGL-SLQHIGRPHSGIDDCKNIANIMKTLAYRGFI  216 (224)
T ss_dssp             -CTTTHHHHHHHT-TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             -CCCCHHHHHHHc-CCCCCCCCcChHHHHHHHHHHHHHHHHcCCE
Confidence             348999999988 9986556899999999999999999987644

>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*

Probab=99.93  E-value=2.5e-26  Score=209.84  Aligned_cols=165  Identities=13%  Similarity=0.111  Sum_probs=130.9

Q ss_pred             CCceeeccCcccccc--CCCCccceeEEeeecCC--------C---------C--eEEeeeccCCCCccccccccCCCCH
Q 018586          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDED--------E---------N--VIFHTYVQPQLPVTNYRYEVTGLTE  192 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~~--------g---------~--~~~~~lv~P~~~i~~~~~~~~GIt~  192 (353)
                      ...|+++|+||||++  .++++|+ +.|.+.+..        |         +  ..|+++|+|..+|++.+++|||||+
T Consensus        11 ~~tfVv~DlETTGL~~~~d~IIEI-gaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~   89 (314)
T 3u3y_B           11 MQTLIFLDLEATGLPSSRPEVTEL-CLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK   89 (314)
T ss_dssp             CSEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCH
T ss_pred             cCCEEEEEEECCCCCCCCCeEEEE-EEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCH
Confidence            456999999999986  5678888 677775331        1         2  2589999999999999999999999


Q ss_pred             hhhcCC--CCh-HHHHHHHHHHHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhc-------CcCC--CCceeeccc--
Q 018586          193 EDIKNA--MPL-KEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR-------MNYP--DHMLRDTAK--  257 (353)
Q Consensus       193 e~l~~~--~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~-------~~~~--~~~~~Dt~~--  257 (353)
                      ++|+++  |+| ++|+++|.+|+...          +...+||||| +.||+.||+       +..+  ...++||+.  
T Consensus        90 e~l~~aG~P~f~~ev~~~l~~fL~~~----------~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~  159 (314)
T 3u3y_B           90 AELEVQGRQRFDDNLAILLRAFLQRQ----------PQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAAL  159 (314)
T ss_dssp             HHHHHTTCCBSCHHHHHHHHHHHHTS----------CSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHH
T ss_pred             HHHHhCCCCCcHHHHHHHHHHHHhcC----------CCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHH
Confidence            999999  899 79999999999211          0228999999 999999998       2232  245789987  


Q ss_pred             --ccCCcccC----CCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          258 --YRPLMKTN----LVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       258 --l~~~~~~~----~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                        +.+..+|.    ..+|+|.+|+++|+|++. .++|+|++||++|++||.++.+++..
T Consensus       160 r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~-~~aHrAl~DA~ata~lf~~l~~~~l~  217 (314)
T 3u3y_B          160 KALEQASSPSGNGSRKSYSLGSIYTRLYWQAP-TDSHTAEGHVLTLLSICQWKPQALLQ  217 (314)
T ss_dssp             HHHHTTC-------CCCCSHHHHHHHHHSSCC-SCSSSHHHHHHHHHHHHHSSHHHHHH
T ss_pred             HHHHHHhCccccccCCCCCHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              44455554    478999999999559995 46999999999999999998887654

>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5

Probab=99.93  E-value=7.9e-26  Score=201.52  Aligned_cols=166  Identities=19%  Similarity=0.179  Sum_probs=129.0

Q ss_pred             CCCceeeccCcccccc--CCCCccceeEEeeecC--------------CCCe--EEeeeccCCCCccccccccCCCCHhh
Q 018586          133 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDE--------------DENV--IFHTYVQPQLPVTNYRYEVTGLTEED  194 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~--------------~g~~--~~~~lv~P~~~i~~~~~~~~GIt~e~  194 (353)
                      ....++++|+||||++  .++++|+ +.|.+.+.              .+++  .|+.+|+|..+|++.++++||||+++
T Consensus         8 ~~~~~v~iD~ETTGl~~~~~~IieI-g~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~   86 (238)
T 1y97_A            8 RAETFVFLDLEATGLPSVEPEIAEL-SLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEG   86 (238)
T ss_dssp             CCSEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHH
T ss_pred             ccCeEEEEEeeCCCcCCCCCcEEEE-EEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHH
Confidence            4457999999999986  3567777 66666432              1244  49999999999999999999999999


Q ss_pred             h--cCCCCh-HHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-------CcCCC-CceeecccccCCc
Q 018586          195 I--KNAMPL-KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYPD-HMLRDTAKYRPLM  262 (353)
Q Consensus       195 l--~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~~-~~~~Dt~~l~~~~  262 (353)
                      |  .++|+| ++|.+.|.+|+...          .++.+|||||+ .||+.||+       +.+|. ..++||+.+++.+
T Consensus        87 l~~~~~p~f~~~v~~~l~~fl~~~----------~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~  156 (238)
T 1y97_A           87 LARCRKAGFDGAVVRTLQAFLSRQ----------AGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGL  156 (238)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHTTS----------CSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHH
T ss_pred             HhhcCCCccHHHHHHHHHHHHHhC----------CCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHH
Confidence            9  578999 49999999999211          02389999999 99999998       33342 5689999998887


Q ss_pred             c---------cCCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          263 K---------TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       263 ~---------~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      .         |...+++|..|++.++|++. .++|+|++||++|++||.++.+++..
T Consensus       157 ~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~-~~~H~Al~Da~~ta~l~~~l~~~~~~  212 (238)
T 1y97_A          157 DRAHSHGTRARGRQGYSLGSLFHRYFRAEP-SAAHSAEGDVHTLLLIFLHRAAELLA  212 (238)
T ss_dssp             HHHC----------CCSHHHHHHHHHSSCC-C---CHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HhccCccccCCCCCCCCHHHHHHHHhCCCC-ccCccHHHHHHHHHHHHHHHHHHHHH
Confidence            6         55678999999996449884 45999999999999999999887654

>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}

Probab=99.93  E-value=2.1e-26  Score=214.95  Aligned_cols=168  Identities=17%  Similarity=0.258  Sum_probs=135.4

Q ss_pred             CCCceeeccCcccccc------CCCCccceeEEeeecCCCCeE--EeeeccCCC--CccccccccCCCCHhhhcCCCChH
Q 018586          133 RGPKAVAMDCEMVGGG------SNGTLDLCARVCLVDEDENVI--FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLK  202 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~------~~~~~~il~~v~ivd~~g~~~--~~~lv~P~~--~i~~~~~~~~GIt~e~l~~~~~~~  202 (353)
                      ....|+++|+||||++      .+.++++ ++|.+.+.+|+++  |++||+|..  +|+++++.+||||+++|+++++|.
T Consensus       126 ~~~~~vviD~ETTGl~~~~~~~~deIIEI-gaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~  204 (349)
T 1zbu_A          126 YYDYICIIDFEATCEEGNPPEFVHEIIEF-PVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFP  204 (349)
T ss_dssp             CCSEEEECCCEECCCTTCCTTCCCCEEEC-CEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHH
T ss_pred             cCCeEEEEEEecCCCCCcCCCCCCeEEEE-EEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHH
Confidence            3467899999999984      3567777 6777754467775  999999998  999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHH-Hhc-------CcCCC--CceeecccccCCcccCC-CCCcH
Q 018586          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLR-------MNYPD--HMLRDTAKYRPLMKTNL-VSHSL  271 (353)
Q Consensus       203 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~-~l~-------~~~~~--~~~~Dt~~l~~~~~~~~-~~~~L  271 (353)
                      +|+.+|.+|+....-       +....+|||||+.||+. ||+       +..|.  ..++|+..+++.+++.. ..++|
T Consensus       205 eVl~~f~~~l~~~~~-------~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L  277 (349)
T 1zbu_A          205 QVLKKVIDLMKLKEL-------GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKL  277 (349)
T ss_dssp             HHHHHHHHHHHHTTB-------TTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSH
T ss_pred             HHHHHHHHHHhcccc-------cCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCH
Confidence            999999999943210       01125999999999999 997       33443  36899988876654322 24899


Q ss_pred             HHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchh
Q 018586          272 KYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH  309 (353)
Q Consensus       272 ~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~  309 (353)
                      ..|+++| |+++.+.+|+|++||++|++||.++.+++.
T Consensus       278 ~~l~~~~-gi~~~g~~HrAl~DA~ata~ll~~ll~~~~  314 (349)
T 1zbu_A          278 TIMLEKL-GMDYDGRPHCGLDDSKNIARIAVRMLQDGC  314 (349)
T ss_dssp             HHHHHHT-TCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHc-CCCCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            9999988 999665689999999999999999998754

>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5

Probab=99.93  E-value=2.9e-26  Score=202.47  Aligned_cols=172  Identities=20%  Similarity=0.229  Sum_probs=134.7

Q ss_pred             cCCCceeeccCccccccC--CCCccceeEEeeec-CCCCe----EEeeeccC--CCCccccccccCCCCHhh-hcCCCCh
Q 018586          132 CRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVD-EDENV----IFHTYVQP--QLPVTNYRYEVTGLTEED-IKNAMPL  201 (353)
Q Consensus       132 ~~~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd-~~g~~----~~~~lv~P--~~~i~~~~~~~~GIt~e~-l~~~~~~  201 (353)
                      .....++++|+||||+++  +.++++ +.|.+.. .+|++    .|+.+|+|  ..+|++.++++||||+++ +++++++
T Consensus        26 ~~~~~~vviD~ETTGl~~~~~~IieI-g~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~  104 (224)
T 2f96_A           26 FRGYLPVVVDVETGGFNSATDALLEI-AATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQE  104 (224)
T ss_dssp             TTTEEEEEEEEEESSSCTTTBCEEEE-EEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCH
T ss_pred             ccCCcEEEEEeeCCCCCCCCCeeEEE-EEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCH
Confidence            345579999999999874  456666 6666631 26764    48999999  579999999999999974 8999999


Q ss_pred             HHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcC-----cC---C--CCceeecccccCCcccCCCCCcH
Q 018586          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-----NY---P--DHMLRDTAKYRPLMKTNLVSHSL  271 (353)
Q Consensus       202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-----~~---~--~~~~~Dt~~l~~~~~~~~~~~~L  271 (353)
                      .+|+.+|.+||.+.-     ...+.++.+|||||+.||+.||+.     ..   |  ...++||+.+++.+++   +++|
T Consensus       105 ~~v~~~~~~~l~~~~-----~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~---~~~L  176 (224)
T 2f96_A          105 EAALTEIFRGIRKAL-----KANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG---QTVL  176 (224)
T ss_dssp             HHHHHHHHHHHHHHH-----HHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS---CCSH
T ss_pred             HHHHHHHHHHHHHHh-----hhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC---CCCH
Confidence            999999999983100     000013689999999999999981     22   2  2468999999987765   4699


Q ss_pred             HHHHHHHhCCcCCC-CCCChHHHHHHHHHHHHHHHhchhhhhh
Q 018586          272 KYLTRTYLGYDIQS-GVHDPYEDCVSVMRLYKRFRRQDHQVEE  313 (353)
Q Consensus       272 ~~l~~~~~~~~~~~-~~H~Al~Da~~t~~l~~~~~~~~~~~~~  313 (353)
                      ..|++.+ |+++.. .+|+|++||++|++||.++.+++.++..
T Consensus       177 ~~l~~~~-gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~~  218 (224)
T 2f96_A          177 AKACQAA-GMEFDNREAHSARYDTEKTAELFCGIVNRWKEMGG  218 (224)
T ss_dssp             HHHHHHT-TCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHc-CCCcCCCCCCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999988 998654 5999999999999999999999877443

>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A

Probab=99.91  E-value=1.9e-25  Score=190.64  Aligned_cols=153  Identities=18%  Similarity=0.218  Sum_probs=115.3

Q ss_pred             CCceeeccCccccccC--CCCccceeEEeeecCCCCeE---EeeeccCCCCcccc----c---cccCCCCHhhhcCCCCh
Q 018586          134 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVI---FHTYVQPQLPVTNY----R---YEVTGLTEEDIKNAMPL  201 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~~---~~~lv~P~~~i~~~----~---~~~~GIt~e~l~~~~~~  201 (353)
                      ..+++++|+||||+++  ++++|+ ++| +++.+|+++   |+.+|+|..++++.    +   +.+||||+++|+++|++
T Consensus         4 ~~~~v~iD~ETTGl~~~~~~IieI-g~v-~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~~   81 (180)
T 2igi_A            4 ENNLIWIDLEMTGLDPERDRIIEI-ATL-VTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGD   81 (180)
T ss_dssp             GGCEEEEEEEESSSCTTTCCEEEE-EEE-EECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCH
T ss_pred             CCcEEEEEeeCCCCCCCCCceEEE-EEE-EEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCCH
Confidence            3569999999999874  456666 666 556677764   89999999876554    3   55699999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCC------CCceee--cc-cccCCcccCCCCCcHH
Q 018586          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------DHMLRD--TA-KYRPLMKTNLVSHSLK  272 (353)
Q Consensus       202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~------~~~~~D--t~-~l~~~~~~~~~~~~L~  272 (353)
                      ++|+++|.+|+....        .++..+|||||+.||+.||+..++      ..+++|  |+ .+++.+.|..     .
T Consensus        82 ~~v~~~~~~~l~~~~--------~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p~~-----~  148 (180)
T 2igi_A           82 REAELATLEFLKQWV--------PAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI-----L  148 (180)
T ss_dssp             HHHHHHHHHHHTTTS--------CTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGGG-----G
T ss_pred             HHHHHHHHHHHHHhC--------CCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhChHh-----h
Confidence            999999999992110        011379999999999999994332      245788  65 3555554431     0


Q ss_pred             HHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhch
Q 018586          273 YLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       273 ~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                           . |++ ..++|+|++||++|++||+++++.+
T Consensus       149 -----~-~i~-~~~~H~Al~Da~ata~l~~~~~~~~  177 (180)
T 2igi_A          149 -----D-GFT-KQGTHQAMDDIRESVAELAYYREHF  177 (180)
T ss_dssp             -----G-GSC-CCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             -----h-CCC-CcCCcCcHHHHHHHHHHHHHHHHHh
Confidence                 2 565 4559999999999999999998764

>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A

Probab=99.90  E-value=2.9e-24  Score=191.04  Aligned_cols=169  Identities=21%  Similarity=0.250  Sum_probs=134.4

Q ss_pred             cCCCceeeccCccccccC--CCCccceeEEeee-cCCCCe----EEeeeccC--CCCccccccccCCCCHh-hhcCCCCh
Q 018586          132 CRGPKAVAMDCEMVGGGS--NGTLDLCARVCLV-DEDENV----IFHTYVQP--QLPVTNYRYEVTGLTEE-DIKNAMPL  201 (353)
Q Consensus       132 ~~~~~~~~~D~Ettg~~~--~~~~~il~~v~iv-d~~g~~----~~~~lv~P--~~~i~~~~~~~~GIt~e-~l~~~~~~  201 (353)
                      .....++++|+||||+++  +.++++ +.+.+. +.+|.+    .|+.+|+|  ..+|++.++.+||||++ ++.+++++
T Consensus        34 l~~~~~vviD~ETTGl~~~~~~IieI-gav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~  112 (235)
T 3v9w_A           34 FRGFYPVVIDVETAGFNAKTDALLEI-AAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSG  112 (235)
T ss_dssp             TTTEEEEEEEEEESSSCTTTBCEEEE-EEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCH
T ss_pred             ccCCcEEEEEEeCCCCCCCCCeEEEE-EEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCH
Confidence            445579999999999863  456666 566652 236764    48999999  57899999999999999 99999999


Q ss_pred             HHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-----CcC---CC--CceeecccccCCcccCCCCCcH
Q 018586          202 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-----MNY---PD--HMLRDTAKYRPLMKTNLVSHSL  271 (353)
Q Consensus       202 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-----~~~---~~--~~~~Dt~~l~~~~~~~~~~~~L  271 (353)
                      .+|+.+|.+|+.+.-.     ..+.++.++||||+.||+.||+     ...   |.  ..++||+.+++.++|   .++|
T Consensus       113 ~~vl~~~~~~l~~~~~-----~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p---~~~L  184 (235)
T 3v9w_A          113 YEALHEIFKVVRKGIK-----ASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG---QTVL  184 (235)
T ss_dssp             HHHHHHHHHHHHHHHT-----TTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS---CCSH
T ss_pred             HHHHHHHHHHHHHHhh-----hccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC---CCCH
Confidence            9999999999932000     0000468999999999999997     223   22  458999999988876   3799


Q ss_pred             HHHHHHHhCCcCCC-CCCChHHHHHHHHHHHHHHHhchhh
Q 018586          272 KYLTRTYLGYDIQS-GVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       272 ~~l~~~~~~~~~~~-~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      +.|++.| |+++.. .+|+|++||.+|++||.++.+++.+
T Consensus       185 ~~l~~~~-gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~  223 (235)
T 3v9w_A          185 SKACQTA-GMDFDSTQAHSALYDTERTAVLFCEIVNRWKR  223 (235)
T ss_dssp             HHHHHHH-TCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHc-CCCCCCCCCcChHHHHHHHHHHHHHHHHHHHh
Confidence            9999999 998764 5999999999999999999998765

>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}

Probab=99.90  E-value=8.4e-25  Score=186.31  Aligned_cols=156  Identities=15%  Similarity=0.187  Sum_probs=119.0

Q ss_pred             ccCCCceeeccCcccccc--CCCCccceeEEeeecCCCCeE---Eeeecc-CCC---Ccccc---ccccCCCCHhhhcCC
Q 018586          131 TCRGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI---FHTYVQ-PQL---PVTNY---RYEVTGLTEEDIKNA  198 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~~g~~~---~~~lv~-P~~---~i~~~---~~~~~GIt~e~l~~~  198 (353)
                      .+...+++++|+||||++  .++++|+ |+| ++|.++.++   +..+|+ |..   .+++.   ...+||||+++++++
T Consensus         5 ~~~~~~~v~~D~ETTGL~p~~d~IiEI-gaV-~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~   82 (186)
T 3tr8_A            5 DFSDDNLIWLDLEMTGLDPERDRIIEI-ATI-VTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSS   82 (186)
T ss_dssp             CCCTTCEEEEEEEESSSCTTTCCEEEE-EEE-EECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCC
T ss_pred             cCCCCcEEEEEEECCCCCCCCCceEEE-EEE-EEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcC
Confidence            345678999999999987  4567777 677 766666654   455685 542   23444   445679999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCC------CCceee--ccc-ccCCcccCCCCC
Q 018586          199 MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------DHMLRD--TAK-YRPLMKTNLVSH  269 (353)
Q Consensus       199 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~------~~~~~D--t~~-l~~~~~~~~~~~  269 (353)
                      |++++|+++|++|+....        ..++.+|||||+.||+.||+..++      .++++|  |.. |++.++|...  
T Consensus        83 p~~~ev~~~~l~fl~~~~--------~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P~~~--  152 (186)
T 3tr8_A           83 VDEVEAETLTLAFLEKYV--------SAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQIA--  152 (186)
T ss_dssp             CCHHHHHHHHHHHHTTTS--------CTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCHHHH--
T ss_pred             CCHHHHHHHHHHHHHHhc--------cCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCcccc--
Confidence            999999999999994322        126789999999999999993332      256899  886 8888877521  


Q ss_pred             cHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhch
Q 018586          270 SLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       270 ~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                         .      |++ ..++|+|++||++|.++++.+++.+
T Consensus       153 ---~------~~~-~~~~HrAl~Da~ati~~l~~y~~~~  181 (186)
T 3tr8_A          153 ---A------AHI-KESQHLALQDIRDSIEELRYYRAHL  181 (186)
T ss_dssp             ---T------TSC-CCCCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             ---c------cCC-CCCCcChHHHHHHHHHHHHHHHHHh
Confidence               1      556 4569999999999999999999875

>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}

Probab=99.90  E-value=3.5e-24  Score=184.77  Aligned_cols=148  Identities=16%  Similarity=0.289  Sum_probs=112.5

Q ss_pred             CCCceeeccCccccccC--CCCccceeEEeeecCCCCeE---EeeeccCCCCc----ccccc---ccCCCCHhhhcCCCC
Q 018586          133 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVI---FHTYVQPQLPV----TNYRY---EVTGLTEEDIKNAMP  200 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~~---~~~lv~P~~~i----~~~~~---~~~GIt~e~l~~~~~  200 (353)
                      ...+++++|+||||+++  ++++|+ +.|. .+.++.++   |+.+|+|..++    +++.+   .+||||+++|+++|+
T Consensus         7 ~~~~~vviD~ETTGl~p~~d~IieI-gav~-~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~   84 (194)
T 2gbz_A            7 GNDRLIWIDLEMTGLDTDRDSIIEI-ATIV-TDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVT   84 (194)
T ss_dssp             -CCEEEEEEEEESCSCTTTCCEEEE-EEEE-EETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCC
T ss_pred             CCCCEEEEEeECCCCCCCCCccEEE-EEEE-EcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCC
Confidence            44579999999999874  456666 5655 45555333   78999999876    44444   459999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCcccccCCCCCcE------EEecccHHHHHHhcCcCCC------CceeecccccCCcccCCCC
Q 018586          201 LKEVKDKILEILNNGESTGRLMLDDGKARL------LVGHGLEHDLDSLRMNYPD------HMLRDTAKYRPLMKTNLVS  268 (353)
Q Consensus       201 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~------lvgh~~~~D~~~l~~~~~~------~~~~Dt~~l~~~~~~~~~~  268 (353)
                      +++|+++|.+|+              ++.+      |||||+.||+.||+..++.      .+.+|+.            
T Consensus        85 ~~ev~~~~~~~l--------------~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~------------  138 (194)
T 2gbz_A           85 HAQAEAQTVAFL--------------GEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVS------------  138 (194)
T ss_dssp             HHHHHHHHHHHH--------------TTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHH------------
T ss_pred             HHHHHHHHHHHH--------------HHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHH------------
Confidence            999999999999              5555      9999999999999954432      2345554            


Q ss_pred             CcHHHHHHHHh-----CCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          269 HSLKYLTRTYL-----GYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       269 ~~L~~l~~~~~-----~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                       +|..|++.++     +++ ..++|+|++||++|++||+++++.+..
T Consensus       139 -~l~~l~~~~~p~~~~~i~-~~~~H~Al~Da~ata~ll~~~~~~~~~  183 (194)
T 2gbz_A          139 -TIKELARRWAPAVASGFA-KSSAHTALSDVRDSIDELRHYRQFMGT  183 (194)
T ss_dssp             -HHHHHHHHHCGGGGTTCC-CCSCCSHHHHHHHHHHHHHHHHTTSHH
T ss_pred             -HHHHHHHHhCHHHHhCCC-CCCCcccHHHHHHHHHHHHHHHHHhcc
Confidence             3445555552     244 345999999999999999999998755

>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*

Probab=99.88  E-value=3.3e-23  Score=200.48  Aligned_cols=162  Identities=19%  Similarity=0.213  Sum_probs=127.9

Q ss_pred             CCceeeccCccccccC--CCCccceeEEeeecCCCCeE---EeeeccCCCCc--cccccccCCCCHhhhcCCCCh-HHHH
Q 018586          134 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVI---FHTYVQPQLPV--TNYRYEVTGLTEEDIKNAMPL-KEVK  205 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~~---~~~lv~P~~~i--~~~~~~~~GIt~e~l~~~~~~-~~v~  205 (353)
                      ...++++|+||||+++  +.++++ |.|.+ +.+|+++   |+.+|+|..++  ++.++.|||||+++|.+++.+ .+|+
T Consensus         8 ~~~~vv~DlETTGl~p~~d~IIEI-gaV~v-d~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl   85 (482)
T 2qxf_A            8 QSTFLFHDYETFGTHPALDRPAQF-AAIRT-DSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFA   85 (482)
T ss_dssp             CCEEEEEEEEESSSCTTTSCEEEE-EEEEE-CTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCeEEEE-EEEEE-ECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHH
Confidence            3469999999999864  466666 56644 4577775   99999999987  577889999999999987655 9999


Q ss_pred             HHHHHHHhcCCCCcccccCCCC--CcEEEecc-cHHHHHHhcC-----cCC--C------CceeecccccCCccc-----
Q 018586          206 DKILEILNNGESTGRLMLDDGK--ARLLVGHG-LEHDLDSLRM-----NYP--D------HMLRDTAKYRPLMKT-----  264 (353)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~--~~~lvgh~-~~~D~~~l~~-----~~~--~------~~~~Dt~~l~~~~~~-----  264 (353)
                      .+|.+|+              +  +.+||||| +.||+.||+.     ..+  .      ...+||..+++..++     
T Consensus        86 ~~f~~~l--------------~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~  151 (482)
T 2qxf_A           86 ARIHSLF--------------TVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEG  151 (482)
T ss_dssp             HHHHHHH--------------TSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTT
T ss_pred             HHHHHHH--------------cCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCccc
Confidence            9999999              5  89999999 9999999981     111  1      457899887766542     


Q ss_pred             --------CCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhhhhh
Q 018586          265 --------NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEE  313 (353)
Q Consensus       265 --------~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~~~~  313 (353)
                              ...+++|+.|++.+ |++. .++|+|++||++|++||.++.+....+.+
T Consensus       152 ~~wP~~~~~~~s~kL~~L~~~~-Gi~~-~~aHrAL~DA~aTa~l~~~l~~~~p~l~~  206 (482)
T 2qxf_A          152 INWPENDDGLPSFRLEHLTKAN-GIEH-SNAHDAMADVYATIAMAKLVKTRQPRLFD  206 (482)
T ss_dssp             SCCCBCTTSSBCCCHHHHHHHT-TCCC-C---CTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             ccCcccccCCCCCCHHHHHHHc-CCCC-CCCCCHHHHHHHHHHHHHHHHHhChhhhH
Confidence                    44589999999988 9884 45899999999999999999876555443

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.70  E-value=4.8e-18  Score=145.48  Aligned_cols=119  Identities=24%  Similarity=0.421  Sum_probs=81.1

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc-----CCCCCCCCCCcccccc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDR   79 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~c~~Cgk~f~~~   79 (353)
                      .+.|++++||.|+.|++.|.....|..|++.  |.++++ .|..|++.|.....|..|+     ..++.|+.|++.|...
T Consensus        13 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   90 (190)
T 2i13_A           13 AALEPGEKPYACPECGKSFSRSDHLAEHQRT--HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQR   90 (190)
T ss_dssp             ------------------CCSSHHHHHGGGC--C---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCH
T ss_pred             hhhcCCCCCCcCCCCccccCCHHHHHHHHHH--cCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCH
Confidence            4567788889999999999998889999888  888777 8999999999988888888     3567788999888764


Q ss_pred             ----------------ccccccccccCchhHHHHHHHhcCCCCCCcccCCcchhhhhhhcccc
Q 018586           80 ----------------GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        80 ----------------~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                                      .|+.|++.|...+.|..|+++|++++||.|+.|+..+.....+..+.
T Consensus        91 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~  153 (190)
T 2i13_A           91 ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ  153 (190)
T ss_dssp             HHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHH
Confidence                            38888888888888888888888888888888887766666665544

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.69  E-value=7.2e-18  Score=136.18  Aligned_cols=96  Identities=23%  Similarity=0.316  Sum_probs=85.0

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCcccccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDR   79 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~   79 (353)
                      +-++.|.|+++|.|+.|+++|...+.|..|+++  |+++++ .|..|++.|...+.|..|+   +++.++          
T Consensus        12 h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~----------   79 (133)
T 2lt7_A           12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNI--HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY----------   79 (133)
T ss_dssp             EEEEEETTEEEEEETTTCCEESCHHHHHHHHHH--HHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCE----------
T ss_pred             hceeecCCCcCeECCCCCCCcCCHHHHHHHHHH--cCCCCCeeCCccCeecccccchhhhccccCCCccc----------
Confidence            335678899999999999999999999999999  999999 9999999999999999999   455555          


Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.||++|...+.|..|+++|++++|+.+..
T Consensus        80 ~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k  111 (133)
T 2lt7_A           80 QCLACGKSFINYQFMSSHIKSVHSQDPSGDSK  111 (133)
T ss_dssp             EESSSCCEESSHHHHHHHHHHHTCCCTTSSSC
T ss_pred             cCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCC
Confidence            68999999999999999999999887654433

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.68  E-value=1e-17  Score=143.47  Aligned_cols=119  Identities=23%  Similarity=0.388  Sum_probs=105.0

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc-----CCCCCCCCCCcccccc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDR   79 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~c~~Cgk~f~~~   79 (353)
                      .+.|.++++|.|+.|++.|.....|..|++.  |.++++ .|..|++.|.....|..|+     .+++.|+.|++.|...
T Consensus        41 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  118 (190)
T 2i13_A           41 QRTHTGEKPYKCPECGKSFSDKKDLTRHQRT--HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL  118 (190)
T ss_dssp             GGCC---CCEECTTTCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSH
T ss_pred             HHHcCCCCCccCCCcCchhCCHHHHHHHHHh--cCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCH
Confidence            4578899999999999999999999999999  888888 9999999999999999998     4678899999999875


Q ss_pred             ----------------ccccccccccCchhHHHHHHHhcCCCCCCcccCCcchhhhhhhcccc
Q 018586           80 ----------------GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        80 ----------------~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                                      .|+.|+++|...+.|..|+++|++++||.|+.|+..+.....+..+.
T Consensus       119 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~  181 (190)
T 2i13_A          119 AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ  181 (190)
T ss_dssp             HHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHH
Confidence                            39999999999999999999999999999999998877776666544

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.62  E-value=4.3e-16  Score=123.41  Aligned_cols=106  Identities=22%  Similarity=0.334  Sum_probs=92.0

Q ss_pred             CCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhccC------CCCCCCCCCcccccccc
Q 018586            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLT------GPLSKAHCSGIFSDRGC   81 (353)
Q Consensus         9 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~~------~~~~c~~Cgk~f~~~~C   81 (353)
                      .+++++|.|+.|++.|.....|..|++.  |.++++ .|..|++.|.....|..|+.      ++.+.          .|
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~----------~C   69 (124)
T 2dlq_A            2 SSGSSGVECPTCHKKFLSKYYLKVHNRK--HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF----------TC   69 (124)
T ss_dssp             CCCCSSCCCTTTCCCCSSHHHHHHHHHH--HSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCE----------EC
T ss_pred             CCCCCCCCCCCCCCcCCCHHHHHHHHHh--CCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCe----------EC
Confidence            4688999999999999999999999999  888888 99999999999999999972      12222          58


Q ss_pred             ccccccccCchhHHHHHHHhcCCCCCCcccCCcchhhhhhhcccc
Q 018586           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                      +.|++.|...+.|..|+++|++++||.|+.|+..+.....+..++
T Consensus        70 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  114 (124)
T 2dlq_A           70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM  114 (124)
T ss_dssp             SSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHH
Confidence            999999999999999999999999999999988777766666544

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.58  E-value=6.3e-15  Score=113.60  Aligned_cols=93  Identities=23%  Similarity=0.456  Sum_probs=81.8

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCcccccccc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGC   81 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C   81 (353)
                      .....++++|.|+.|++.|.....|..|++.  |.++++ .|..|++.|.....|..|+   .++.+.          .|
T Consensus         9 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C   76 (106)
T 2ee8_A            9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERT--HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF----------KC   76 (106)
T ss_dssp             CCCCCCCCCCBCSSSCCBCSSHHHHHHHHHH--HCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTT----------SC
T ss_pred             cCCcCCCcCeECCCCCCccCCHHHHHHHHHH--cCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCe----------EC
Confidence            4456678999999999999999999999999  888888 9999999999999999998   333333          58


Q ss_pred             ccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      +.|++.|...+.|..|+++|++++||.+.
T Consensus        77 ~~C~~~f~~~~~L~~H~~~H~~~~~~~~~  105 (106)
T 2ee8_A           77 QECGKGFCQSRTLAVHKTLHMQTSSPTAA  105 (106)
T ss_dssp             SSSCCCCSSHHHHHHHHHHTTSCCCCCCC
T ss_pred             CCcCCcccCHHHHHHHHHHhCCCCCCcCC
Confidence            89999999999999999999999998753

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.57  E-value=1.8e-15  Score=129.38  Aligned_cols=117  Identities=18%  Similarity=0.294  Sum_probs=102.1

Q ss_pred             CCCCCceee--ccccccccChHHHHHHHhhhcCCCCCC-cc--ccCcccCCChHHHHhcc-----CCCCCCC--CCCccc
Q 018586            9 KRSTARHKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KC--AVCQKLSKSFESLREHL-----TGPLSKA--HCSGIF   76 (353)
Q Consensus         9 h~~~k~~~C--~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C--~~C~~~f~~~~~l~~H~-----~~~~~c~--~Cgk~f   76 (353)
                      ..+.++|.|  +.|++.|.....|..|++.  |.++++ .|  ..|++.|.....|..|+     .+++.|.  .|++.|
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f   84 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCK--HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRF   84 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHH--HHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEE
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHh--cCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCcc
Confidence            457899999  6899999999999999999  888888 99  88999999999999998     3467898  899999


Q ss_pred             ccc------------------cc--ccccccccCchhHHHHHHHhcCCCCCCccc--CCcchhhhhhhccccc
Q 018586           77 SDR------------------GC--NLCMNIFDSPSSLIKHKEACSLSAPVPFEK--TLSNAESQKKISGAID  127 (353)
Q Consensus        77 ~~~------------------~C--~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~--~~~~~~~~~~~~~~~~  127 (353)
                      ...                  .|  +.|++.|...+.|..|+++|++++||.|+.  |+..+.....+..+..
T Consensus        85 ~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~  157 (190)
T 1tf6_A           85 TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK  157 (190)
T ss_dssp             SCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHH
Confidence            854                  38  889999999999999999999999999988  9988887777776654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.57  E-value=2.8e-15  Score=115.98  Aligned_cols=95  Identities=19%  Similarity=0.251  Sum_probs=84.1

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc--CCCCCCCCCCcccccc
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL--TGPLSKAHCSGIFSDR   79 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~--~~~~~c~~Cgk~f~~~   79 (353)
                      ++..+.|++++||.|+.|++.|.....|..|+++  |.  ++ .|..|++.|.....|..|+  .++.+.          
T Consensus         5 ss~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--H~--~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~----------   70 (107)
T 1wjp_A            5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERL--CR--NAAVCPYCSLRFFSPELKQEHESKCEYKKL----------   70 (107)
T ss_dssp             CCCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHH--HH--HSBCCTTTCCCBSSHHHHHHHHHHCSTGGG----------
T ss_pred             cccCcccCCCcCeECCCCCCccCCHHHHHHHHHH--CC--CCccCCCCCCccCCHHHHHHHHHcCCCCCc----------
Confidence            5668899999999999999999999999999999  73  46 9999999999999999998  333333          


Q ss_pred             ccccccccccCchhHHHHHH-HhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKE-ACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~-~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|++ +|++++||++..
T Consensus        71 ~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~  103 (107)
T 1wjp_A           71 TCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSG  103 (107)
T ss_dssp             EEGGGTEECSSHHHHHHHHHHTSCCCCCCCCCC
T ss_pred             cCccccchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            69999999999999999997 899999998753

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.57  E-value=1.2e-15  Score=119.97  Aligned_cols=104  Identities=19%  Similarity=0.388  Sum_probs=89.7

Q ss_pred             CCCCCceeecc--ccccccChHHHHHHHhhhcCCCCCC-ccc--cCcccCCChHHHHhcc---CCCCCCCCCCccccccc
Q 018586            9 KRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRG   80 (353)
Q Consensus         9 h~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~h~~~~~-~C~--~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~   80 (353)
                      +++++||.|+.  |++.|.....|..|++.  |.++++ .|.  .|++.|.....|..|+   .++.+.          .
T Consensus         1 a~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~----------~   68 (119)
T 2jp9_A            1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRK--HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPF----------Q   68 (119)
T ss_dssp             CCSSCCBCCCSTTSCCCBSCHHHHHHHHHH--HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCE----------E
T ss_pred             CCCCeeeeCCCCCCcchhCCHHHHHHHHHh--hCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCc----------c
Confidence            36789999997  99999999999999999  888888 998  7999999999999998   333333          5


Q ss_pred             cccccccccCchhHHHHHHHhcCCCCCCc--ccCCcchhhhhhhcc
Q 018586           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF--EKTLSNAESQKKISG  124 (353)
Q Consensus        81 C~~C~k~F~~~s~L~~H~~~h~~~k~~~c--~~~~~~~~~~~~~~~  124 (353)
                      |+.|++.|...+.|..|+++|++++||.|  +.|+..+.....+..
T Consensus        69 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~  114 (119)
T 2jp9_A           69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVR  114 (119)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHH
T ss_pred             CCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHH
Confidence            88899999999999999999999999999  789877666555443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.53  E-value=1.1e-14  Score=110.11  Aligned_cols=87  Identities=31%  Similarity=0.519  Sum_probs=78.3

Q ss_pred             CCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCcccccccccc
Q 018586            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNL   83 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~   83 (353)
                      ++++++||.|+.|++.|.....|..|++.  |.++++ .|..|++.|.....|..|+   .++.+.          .|+.
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~   69 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRC--HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF----------KCQI   69 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGG--CCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCE----------ECSS
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHh--cCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCc----------cCCC
Confidence            46789999999999999999999999999  888888 9999999999999999998   333333          5899


Q ss_pred             ccccccCchhHHHHHHHhcCCCC
Q 018586           84 CMNIFDSPSSLIKHKEACSLSAP  106 (353)
Q Consensus        84 C~k~F~~~s~L~~H~~~h~~~k~  106 (353)
                      |++.|...+.|..|+++|+++++
T Consensus        70 C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           70 CPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             SSCEESSHHHHHHHHTTCCSCCC
T ss_pred             CCCccCCHHHHHHHHHHhcCCCC
Confidence            99999999999999999998876

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.53  E-value=7.6e-15  Score=121.14  Aligned_cols=100  Identities=21%  Similarity=0.369  Sum_probs=72.5

Q ss_pred             CCCCCceeeccccccccChHHHHHHHhhhcCCCCC---------CccccCcccCCChHHHHhcc-----CCCCCCCC--C
Q 018586            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ---------PKCAVCQKLSKSFESLREHL-----TGPLSKAH--C   72 (353)
Q Consensus         9 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~---------~~C~~C~~~f~~~~~l~~H~-----~~~~~c~~--C   72 (353)
                      +..+.+|.|..|++.|.....|..|++.+ |.+..         ..|..|++.|.....|..|+     .+++.|..  |
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~-H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C   98 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTME-HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGC   98 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTT-TSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTT
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhh-cCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCC
Confidence            45678899999999999999999999853 66543         36999999999999999998     34566655  6


Q ss_pred             Ccccccc----------------cccc--ccccccCchhHHHHHHHhcCCCCCCc
Q 018586           73 SGIFSDR----------------GCNL--CMNIFDSPSSLIKHKEACSLSAPVPF  109 (353)
Q Consensus        73 gk~f~~~----------------~C~~--C~k~F~~~s~L~~H~~~h~~~k~~~c  109 (353)
                      ++.|...                .|+.  |+++|...+.|..|+++|++++||+|
T Consensus        99 ~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c  153 (155)
T 2rpc_A           99 GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS  153 (155)
T ss_dssp             CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCS
T ss_pred             CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCC
Confidence            6666543                2554  66666666666666655655555555

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.52  E-value=8.2e-15  Score=116.21  Aligned_cols=102  Identities=20%  Similarity=0.295  Sum_probs=78.1

Q ss_pred             CCCceeec--cccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccc--
Q 018586           11 STARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCN--   82 (353)
Q Consensus        11 ~~k~~~C~--~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~--   82 (353)
                      ++++|.|+  .|++.|.....|..|+++  | ++++ .|..|++.|.....|..|+   .++.+.          .|+  
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~~   68 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHT--H-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF----------QCTFE   68 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGG--G-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCE----------ECCST
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHH--c-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCe----------eCCCC
Confidence            46799999  899999999999999998  8 6666 9999999999999999998   232222          354  


Q ss_pred             cccccccCchhHHHHHHHhcCCCCCCcc--cCCcchhhhhhhccc
Q 018586           83 LCMNIFDSPSSLIKHKEACSLSAPVPFE--KTLSNAESQKKISGA  125 (353)
Q Consensus        83 ~C~k~F~~~s~L~~H~~~h~~~k~~~c~--~~~~~~~~~~~~~~~  125 (353)
                      .|++.|...+.|..|+++|++++||.|+  .|+..+.....+..+
T Consensus        69 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H  113 (124)
T 1ubd_C           69 GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH  113 (124)
T ss_dssp             TCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHH
T ss_pred             CCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHH
Confidence            3788888888888888888888888884  477666555555443

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.50  E-value=2e-14  Score=118.53  Aligned_cols=114  Identities=18%  Similarity=0.298  Sum_probs=92.0

Q ss_pred             CCceeeccccccccChHHHHHHHhh-hcCCCCCC-ccc-----cCcccCCChHHHHhcc-----CCCCCCCC--CCcccc
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKI-SYHSVHQP-KCA-----VCQKLSKSFESLREHL-----TGPLSKAH--CSGIFS   77 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~-~~h~~~~~-~C~-----~C~~~f~~~~~l~~H~-----~~~~~c~~--Cgk~f~   77 (353)
                      |.+|.|+.|++.|.....|..|++. +.|.++++ .|.     .|++.|.....|..|+     .+++.|..  |++.|.
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   80 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYS   80 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCS
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCccc
Confidence            4578999999999999999999982 11777777 665     4459999999999998     46788974  999998


Q ss_pred             cc----------------cccc--ccccccCchhHHHHH-HHhcCCCCCCccc--CCcchhhhhhhccc
Q 018586           78 DR----------------GCNL--CMNIFDSPSSLIKHK-EACSLSAPVPFEK--TLSNAESQKKISGA  125 (353)
Q Consensus        78 ~~----------------~C~~--C~k~F~~~s~L~~H~-~~h~~~k~~~c~~--~~~~~~~~~~~~~~  125 (353)
                      ..                .|+.  |+++|...+.|..|+ ++|++++||.|+.  |+..+.....+..+
T Consensus        81 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H  149 (155)
T 2gli_A           81 RLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH  149 (155)
T ss_dssp             SHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHH
Confidence            65                3987  999999999999998 7899999999977  87776665555443

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.50  E-value=7.6e-15  Score=125.44  Aligned_cols=114  Identities=19%  Similarity=0.331  Sum_probs=98.0

Q ss_pred             CCCCCCCceee--ccccccccChHHHHHHHhhhcCCCCCC-ccc--cCcccCCChHHHHhcc-------CCCCCC--CCC
Q 018586            7 LPKRSTARHKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-------TGPLSK--AHC   72 (353)
Q Consensus         7 ~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~--~C~~~f~~~~~l~~H~-------~~~~~c--~~C   72 (353)
                      +.|++++||.|  +.|++.|.....|..|+++  |.++++ .|.  .|++.|.....|..|+       ..++.|  +.|
T Consensus        35 ~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C  112 (190)
T 1tf6_A           35 CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT--HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENC  112 (190)
T ss_dssp             HHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTT--TTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSS
T ss_pred             HhcCCCCCccCCCCCCChhhCCHHHHHHHHHH--ccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCC
Confidence            35778999999  8899999999999999999  998888 999  8999999999999997       235778  999


Q ss_pred             Ccccccc----------------cccc--ccccccCchhHHHHHHHhcCCCCCCccc---CCcchhhhhhhccc
Q 018586           73 SGIFSDR----------------GCNL--CMNIFDSPSSLIKHKEACSLSAPVPFEK---TLSNAESQKKISGA  125 (353)
Q Consensus        73 gk~f~~~----------------~C~~--C~k~F~~~s~L~~H~~~h~~~k~~~c~~---~~~~~~~~~~~~~~  125 (353)
                      |+.|...                .|+.  |+++|...+.|..|+++|++   |+|+.   |+..+.....+..+
T Consensus       113 ~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H  183 (190)
T 1tf6_A          113 GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKH  183 (190)
T ss_dssp             CEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCCSCHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCccccHHHHHHH
Confidence            9999975                3987  99999999999999999988   88888   77665555544443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=6.5e-14  Score=109.56  Aligned_cols=95  Identities=18%  Similarity=0.120  Sum_probs=78.9

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC--ccccCcccC--CChHHHHhcc---CCCCCCCCCCccccc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP--KCAVCQKLS--KSFESLREHL---TGPLSKAHCSGIFSD   78 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~--~C~~C~~~f--~~~~~l~~H~---~~~~~c~~Cgk~f~~   78 (353)
                      .+.|++++||.|+.|++.|.....|..|++.+.|.+.++  .|..|++.|  .....|..|+   .++.++         
T Consensus        11 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~---------   81 (115)
T 2dmi_A           11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL---------   81 (115)
T ss_dssp             CCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSC---------
T ss_pred             eeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcce---------
Confidence            578999999999999999999999999998622344444  699999999  8889999998   334444         


Q ss_pred             cccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           79 RGCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        79 ~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                       .|+.|++.|...+.|..|+++|+.....+++
T Consensus        82 -~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           82 -KCMYCGHSFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             -BCSSSCCBCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             -ECCCCCCccCCHHHHHHHHHHhCCcccCCCC
Confidence             5899999999999999999999877665544

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.47  E-value=1.9e-14  Score=107.33  Aligned_cols=84  Identities=21%  Similarity=0.509  Sum_probs=71.6

Q ss_pred             CCCceeec--cccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccc
Q 018586           11 STARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLC   84 (353)
Q Consensus        11 ~~k~~~C~--~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C   84 (353)
                      |++||.|+  .|++.|.....|..|++.  |.++++ .|..|++.|.....|..|+   .++.+.          .|+.|
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~C   68 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRI--HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF----------ACDIC   68 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCE----------ECTTT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHH--hCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCc----------cCCCC
Confidence            47899998  699999999999999999  888888 9999999999999999998   344333          58899


Q ss_pred             cccccCchhHHHHHHHhcCCCC
Q 018586           85 MNIFDSPSSLIKHKEACSLSAP  106 (353)
Q Consensus        85 ~k~F~~~s~L~~H~~~h~~~k~  106 (353)
                      ++.|...+.|..|+++|+++++
T Consensus        69 ~~~f~~~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           69 GRKFARSDERKRHTKIHLRQKD   90 (90)
T ss_dssp             CCEESSHHHHHHHHGGGGC---
T ss_pred             CchhCCHHHHHHHHHHhcccCC
Confidence            9999999999999999998753

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=8.5e-14  Score=107.97  Aligned_cols=85  Identities=29%  Similarity=0.485  Sum_probs=75.8

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCcccccccc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGC   81 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C   81 (353)
                      ..+|+++++|.| .|++.|.....|..|++.  |.++++ .|..|++.|.....|..|+   .++.++          .|
T Consensus         2 s~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C   68 (110)
T 2csh_A            2 SSGSSGDKLYPC-QCGKSFTHKSQRDRHMSM--HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY----------EC   68 (110)
T ss_dssp             CCCCCCCCCEEC-TTSCEESSHHHHHHHHHH--HSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCE----------EC
T ss_pred             CCCCCCCCCEec-cCCCccCCHHHHHHHHHH--cCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCe----------eC
Confidence            457999999999 999999999999999999  888888 9999999999999999998   233332          68


Q ss_pred             ccccccccCchhHHHHHHHhcC
Q 018586           82 NLCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~~  103 (353)
                      +.|++.|...+.|..|+++|+.
T Consensus        69 ~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           69 NICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             SSSCCEESCHHHHHHHHHHHHH
T ss_pred             CCCcchhcCHHHHHHHHHHccc
Confidence            9999999999999999999874

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.7e-13  Score=103.24  Aligned_cols=84  Identities=27%  Similarity=0.413  Sum_probs=74.0

Q ss_pred             CCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCC--CCCCCCCccccccccc
Q 018586            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGP--LSKAHCSGIFSDRGCN   82 (353)
Q Consensus         9 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~--~~c~~Cgk~f~~~~C~   82 (353)
                      .+++++|.|+.|++.|.....|..|++.  |.++++ .|..|++.|.....|..|+   .+.  .++          .|+
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~----------~C~   69 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVYHLNRHKLS--HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY----------ICQ   69 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSHHHHHHHHH--SCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSB----------CCS
T ss_pred             CCCCCCeECCCCCCccCChHHHHHHHHh--cCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCce----------ECC
Confidence            4688999999999999999999999999  998888 9999999999999999998   332  333          588


Q ss_pred             cccccccCchhHHHHHH-HhcCC
Q 018586           83 LCMNIFDSPSSLIKHKE-ACSLS  104 (353)
Q Consensus        83 ~C~k~F~~~s~L~~H~~-~h~~~  104 (353)
                      .|++.|...+.|..|++ .|.++
T Consensus        70 ~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           70 SCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CccchhCCHHHHHHHHHHhcCCC
Confidence            89999999999999986 67654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.42  E-value=9.7e-14  Score=101.39  Aligned_cols=78  Identities=32%  Similarity=0.597  Sum_probs=69.7

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCcccccccccccccccc
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFD   89 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~   89 (353)
                      ||.|+.|++.|.....|..|++.  |.++++ .|..|++.|.....|..|+   .++.+.          .|+.|++.|.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~C~~~f~   68 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLI--HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH----------KCQVCGKAFS   68 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH--HHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCE----------ECTTTSCEES
T ss_pred             CccCCCCcccccCchhHHHHHHH--cCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCC----------cCCCcchhhC
Confidence            69999999999999999999999  888888 9999999999999999998   344333          5888999999


Q ss_pred             CchhHHHHHHHhcC
Q 018586           90 SPSSLIKHKEACSL  103 (353)
Q Consensus        90 ~~s~L~~H~~~h~~  103 (353)
                      ..+.|..|+++|+|
T Consensus        69 ~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           69 QSSNLITHSRKHTG   82 (82)
T ss_dssp             SHHHHHHHHHHHC-
T ss_pred             ChHHHHHHHHhhCC
Confidence            99999999999975

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.36  E-value=6.1e-13  Score=109.45  Aligned_cols=94  Identities=33%  Similarity=0.588  Sum_probs=83.3

Q ss_pred             CCCCCCceeeccc-----cccccChHHHHHHHhhhcCCCCCC-cccc--CcccCCChHHHHhcc-----CCCCCCCC--C
Q 018586            8 PKRSTARHKCVAC-----YKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAH--C   72 (353)
Q Consensus         8 ~h~~~k~~~C~~C-----~k~f~~~~~l~~H~~~~~h~~~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~c~~--C   72 (353)
                      .|+++++|.|+.|     ++.|.....|..|++.  |.++++ .|..  |++.|.....|..|+     .+++.|+.  |
T Consensus        28 ~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C  105 (155)
T 2gli_A           28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR--HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGC  105 (155)
T ss_dssp             SSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHH--HHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTC
T ss_pred             cCCCCcceeCCCCCccchhhhhhhHHHHHHHHHh--cCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCC
Confidence            6788999998853     4999999999999999  888888 9984  999999999999998     35688998  9


Q ss_pred             Ccccccc-----------------cccc--ccccccCchhHHHHHHHhcC
Q 018586           73 SGIFSDR-----------------GCNL--CMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        73 gk~f~~~-----------------~C~~--C~k~F~~~s~L~~H~~~h~~  103 (353)
                      ++.|...                 .|+.  |+++|...+.|..|+++|+|
T Consensus       106 ~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          106 SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            9999875                 2988  99999999999999999875

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.31  E-value=4.6e-12  Score=96.09  Aligned_cols=85  Identities=25%  Similarity=0.454  Sum_probs=73.7

Q ss_pred             CCCCCCCceeecc--ccccccChHHHHHHHhhhcCCCCCC-ccc--cCcccCCChHHHHhcc---CCCCCCCCCCccccc
Q 018586            7 LPKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL---TGPLSKAHCSGIFSD   78 (353)
Q Consensus         7 ~~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~h~~~~~-~C~--~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~   78 (353)
                      ......++|.|..  |++.|.....|..|++.  |.++++ .|.  .|++.|.....|..|+   .++.++         
T Consensus         8 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~---------   76 (100)
T 2ebt_A            8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRT--HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF---------   76 (100)
T ss_dssp             CCCCSCCCEECCSSSCCCEESCHHHHHHHHHH--HSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSC---------
T ss_pred             cccccCcceEcCCCCCCCcccCHHHHHHHHHH--hCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCe---------
Confidence            3445678999996  99999999999999999  888888 996  6999999999999998   444443         


Q ss_pred             cccccccccccCchhHHHHHHHhcC
Q 018586           79 RGCNLCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        79 ~~C~~C~k~F~~~s~L~~H~~~h~~  103 (353)
                       .|+.|++.|...+.|..|+++|++
T Consensus        77 -~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           77 -QCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             -BCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             -ECCCCcCccCCHHHHHHHHHHhCC
Confidence             588899999999999999999974

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.28  E-value=2.7e-12  Score=101.30  Aligned_cols=88  Identities=27%  Similarity=0.435  Sum_probs=74.5

Q ss_pred             CCCCCCCceeeccccccccChHHHHHHHhhh-cCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCcccccccc
Q 018586            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKIS-YHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGC   81 (353)
Q Consensus         7 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~-~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C   81 (353)
                      +.|.+++||.|+.|++.|.....|..|+..+ .|.++++ .|..|++.|.....|..|+   .++.++          .|
T Consensus        28 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C   97 (124)
T 2dlq_A           28 RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY----------KC   97 (124)
T ss_dssp             HHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSE----------EC
T ss_pred             HhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCc----------cC
Confidence            4577889999999999999999999999852 1466777 9999999999999999998   444443          58


Q ss_pred             ccccccccCchhHHHHHHH-hcCC
Q 018586           82 NLCMNIFDSPSSLIKHKEA-CSLS  104 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~-h~~~  104 (353)
                      +.|++.|...+.|..|++. |.++
T Consensus        98 ~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           98 SSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             CCccchhCCHHHHHHHHHHHCCCC
Confidence            8999999999999999985 6554

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.26  E-value=1.6e-12  Score=101.93  Aligned_cols=83  Identities=25%  Similarity=0.539  Sum_probs=72.9

Q ss_pred             CCCCCCCceeec--cccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccc
Q 018586            7 LPKRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRG   80 (353)
Q Consensus         7 ~~h~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~   80 (353)
                      +.|.+++||.|+  .|++.|.....|..|++.  |.++++ .|..|++.|.....|..|+   .++.+.          .
T Consensus        29 ~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~   96 (119)
T 2jp9_A           29 RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR--HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF----------S   96 (119)
T ss_dssp             HHHHTTCCEECCSTTCCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCE----------E
T ss_pred             HhhCCCCCccCCCCCCcCccCCHHHHHHHHHH--cCCCCCccCCccCchhCCHHHHHHHHHHhcCCCCe----------e
Confidence            357788999999  799999999999999999  888888 9999999999999999998   333332          3


Q ss_pred             c--ccccccccCchhHHHHHHHh
Q 018586           81 C--NLCMNIFDSPSSLIKHKEAC  101 (353)
Q Consensus        81 C--~~C~k~F~~~s~L~~H~~~h  101 (353)
                      |  +.|++.|...+.|..|+++|
T Consensus        97 C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           97 CRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCCCCCccccCCHHHHHHHHhcC
Confidence            5  88999999999999999876

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=4.7e-12  Score=91.51  Aligned_cols=69  Identities=30%  Similarity=0.500  Sum_probs=58.5

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCCccccCcccCCChHHHHhccCCCCCCCCCCccccccccccc
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLC   84 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C   84 (353)
                      ....+.+++||.|+.|++.|.....|..|+++  |.++++                      +            .|+.|
T Consensus         9 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~----------------------~------------~C~~C   52 (77)
T 2cot_A            9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRT--HTGEKP----------------------Y------------KCDEC   52 (77)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTT--TCCSCS----------------------E------------ECSSS
T ss_pred             CcCcCCCCCCEECCCCCcccCCHHHHHHHHHH--cCCCcC----------------------e------------eCCCC
Confidence            35667889999999999999999999999998  765433                      1            36778


Q ss_pred             cccccCchhHHHHHHHhcCCCCCCc
Q 018586           85 MNIFDSPSSLIKHKEACSLSAPVPF  109 (353)
Q Consensus        85 ~k~F~~~s~L~~H~~~h~~~k~~~c  109 (353)
                      ++.|...+.|..|+++|++++||+|
T Consensus        53 ~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           53 GKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCccCCHHHHHHHHHHhCCCCCCCC
Confidence            8889999999999999999999987

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.24  E-value=3.1e-12  Score=87.84  Aligned_cols=58  Identities=21%  Similarity=0.355  Sum_probs=46.4

Q ss_pred             CCceeeccccccccChHHHHHHHhhhcCCCCCCccccCcccCCChHHHHhccCCCCCCCCCCccccccccccccccccCc
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSP   91 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C~k~F~~~   91 (353)
                      ||||.|+.||++|...+.|..|+++  |+++++                      |            .|++||++|.+.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~--Ht~ekp----------------------~------------~C~~C~k~F~~~   45 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRA--HLGYRP----------------------R------------SCPECGKCFRDQ   45 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH--HHTCCC----------------------E------------ECTTTCCEESSH
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHH--hCCCcC----------------------e------------ECCCCCCCcCCH
Confidence            7899999999999999999999999  888765                      1            355666777777


Q ss_pred             hhHHHHHHHhcCCC
Q 018586           92 SSLIKHKEACSLSA  105 (353)
Q Consensus        92 s~L~~H~~~h~~~k  105 (353)
                      +.|..|+++|++++
T Consensus        46 ~~L~~H~~~Htgep   59 (60)
T 4gzn_C           46 SEVNRHLKVHQNKP   59 (60)
T ss_dssp             HHHHHHGGGGSCC-
T ss_pred             HHHHHHhCccCCCC
Confidence            77777777777653

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.24  E-value=5e-12  Score=93.71  Aligned_cols=80  Identities=28%  Similarity=0.497  Sum_probs=69.6

Q ss_pred             CCCceeecc--ccccccChHHHHHHHhhhcCCCCCC-ccc--cCcccCCChHHHHhcc---CCCCCCCCCCccccccccc
Q 018586           11 STARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCN   82 (353)
Q Consensus        11 ~~k~~~C~~--C~k~f~~~~~l~~H~~~~~h~~~~~-~C~--~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~   82 (353)
                      +.++|.|+.  |++.|.....|..|++.  |.++++ .|.  .|++.|.....|..|+   .++.+.          .|+
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~   69 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRT--HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF----------QCQ   69 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTT--SCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCE----------ECS
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHh--cCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCc----------cCC
Confidence            457899999  99999999999999999  998888 996  6999999999999998   344433          588


Q ss_pred             cccccccCchhHHHHHHHhc
Q 018586           83 LCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        83 ~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|++.|...+.|..|+++|.
T Consensus        70 ~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           70 KCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             SSSCEESSHHHHHHHGGGGC
T ss_pred             CCCcccCCHHHHHHHHHhhC
Confidence            89999999999999999873

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.22  E-value=1e-12  Score=97.69  Aligned_cols=81  Identities=17%  Similarity=0.325  Sum_probs=70.0

Q ss_pred             CCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhccCCCCCCCCCCccccccccccccccccC
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDS   90 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C~k~F~~   90 (353)
                      ++||.|+.|++.|...+.|..|+++  |.++++ .|..|++.|.....|..|+.....        ....|+.|++.|..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~--------~~~~c~~C~~~f~~   70 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDICGRKFARSDERKRHRDIQHI--------LPILEDKVEELLSK   70 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH--HHCCCCEECTTTCCEESSHHHHHHHHHHHTH--------HHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHH--cCCCCCccCCCCCCccCCHHHHHHHHHHhCC--------CcchHHHHHHHHHH
Confidence            5799999999999999999999999  888888 999999999999999999821110        11259999999999


Q ss_pred             chhHHHHHHHhc
Q 018586           91 PSSLIKHKEACS  102 (353)
Q Consensus        91 ~s~L~~H~~~h~  102 (353)
                      .+.|..|++.++
T Consensus        71 ~~~L~~H~~~~h   82 (88)
T 1llm_C           71 NYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHH
Confidence            999999998764

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.18  E-value=2.3e-11  Score=87.11  Aligned_cols=66  Identities=29%  Similarity=0.533  Sum_probs=54.6

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCCccccCcccCCChHHHHhccCCCCCCCCCCcccccccccccc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCM   85 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C~   85 (353)
                      ...++++++|+|+.|++.|.....|..|+++  |.++++                      +            .|+.|+
T Consensus         9 ~~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~----------------------~------------~C~~C~   52 (74)
T 2lce_A            9 SHMTHSDKPYKCDRCQASFRYKGNLASHKTV--HTGEKP----------------------Y------------RCNICG   52 (74)
T ss_dssp             --CCCCCCSBCCTTSSCCBSCHHHHHHHHHH--HCCCCS----------------------E------------ECTTTC
T ss_pred             ccccCCCCCeECCCCCceeCCHHHHHHHHHH--cCCCCC----------------------E------------ECCCCC
Confidence            4467788999999999999999999999998  765432                      1            477788


Q ss_pred             ccccCchhHHHHHHHhcCCCCC
Q 018586           86 NIFDSPSSLIKHKEACSLSAPV  107 (353)
Q Consensus        86 k~F~~~s~L~~H~~~h~~~k~~  107 (353)
                      +.|...+.|..|+++|++++||
T Consensus        53 k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           53 AQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CEESCHHHHHHHHHHHCCSCCC
T ss_pred             chhCCHHHHHHHHHhcCCCCCC
Confidence            8999999999999999999886

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.16  E-value=1.5e-11  Score=94.00  Aligned_cols=71  Identities=15%  Similarity=0.101  Sum_probs=58.2

Q ss_pred             CCCCCceeeccccccccChHHHHHHHh-hhcCCCCCCccccCcccCCChHHHHhccCCCCCCCCCCcccccccccccccc
Q 018586            9 KRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNI   87 (353)
Q Consensus         9 h~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C~k~   87 (353)
                      .+|++||.|+.|++.|...+.|..|++ .  |++..                     ++.++          .|+.||++
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~--H~~~~---------------------~ekpf----------~C~~Cgk~   59 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSE--HPNVV---------------------LNSSY----------VCVECNFL   59 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHH--CSSCC---------------------CSCCE----------EETTTTEE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhh--CCCCC---------------------CCCCc----------CCCCCCcc
Confidence            468999999999999999999999997 6  64310                     01112          47889999


Q ss_pred             ccCchhHHHH-HHHhcCCCCCCcccC
Q 018586           88 FDSPSSLIKH-KEACSLSAPVPFEKT  112 (353)
Q Consensus        88 F~~~s~L~~H-~~~h~~~k~~~c~~~  112 (353)
                      |...+.|..| +++|++++||.|..+
T Consensus        60 F~~~~~L~~H~~r~Htgekpy~C~~~   85 (102)
T 2ghf_A           60 TKRYDALSEHNLKYHPGEENFKLTMV   85 (102)
T ss_dssp             ESSTHHHHTHHHHTSTTCCCEEEEEC
T ss_pred             cCCHHHHHHHHHHhcCCCCCeeCCcc
Confidence            9999999999 899999999999864

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.14  E-value=5.6e-11  Score=85.98  Aligned_cols=72  Identities=19%  Similarity=0.260  Sum_probs=52.1

Q ss_pred             CCCCCceeecc--ccccccChHHHHHHHh-hhcCCCCCC-ccccCcccCCChHHHHhccCCCCCCCCCCccccccccccc
Q 018586            9 KRSTARHKCVA--CYKQFKRKDHLIEHMK-ISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLC   84 (353)
Q Consensus         9 h~~~k~~~C~~--C~k~f~~~~~l~~H~~-~~~h~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C   84 (353)
                      ++++++|.|..  |++.|.....|..|++ .  |+++++ .|..                                 +.|
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~--H~~~~~~~C~~---------------------------------~~C   46 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQ--HIHQKSFSCPE---------------------------------PAC   46 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHG--GGSCCCEECSC---------------------------------TTT
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHH--hCCCCCeECCC---------------------------------CCC
Confidence            46889999997  9999999999999998 6  776554 4433                                 116


Q ss_pred             cccccCchhHHHHHHHhcCCCCCCcccCCcc
Q 018586           85 MNIFDSPSSLIKHKEACSLSAPVPFEKTLSN  115 (353)
Q Consensus        85 ~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~  115 (353)
                      ++.|...+.|..|+++|++++||.|+.|+..
T Consensus        47 ~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~   77 (79)
T 2dlk_A           47 GKSFNFKKHLKEHMKLHSDTRDYICEFSGPS   77 (79)
T ss_dssp             CCEESSHHHHHHHHHHHHTSCCCSCCSSSCC
T ss_pred             cCccCCHHHHHHHHHHhCCCCCeeCCCCCCC
Confidence            6666666666666666666666666666543

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.12  E-value=3.5e-11  Score=88.14  Aligned_cols=74  Identities=27%  Similarity=0.492  Sum_probs=66.9

Q ss_pred             ceee--ccccccccChHHHHHHHhhhcCCCCCC-cccc--CcccCCChHHHHhcc---CCCCCCCCCCcccccccccc--
Q 018586           14 RHKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNL--   83 (353)
Q Consensus        14 ~~~C--~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~--C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~--   83 (353)
                      ||.|  +.|++.|.....|..|+++  |.++++ .|..  |++.|.....|..|+   .+ +            .|+.  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~------------~C~~~~   65 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFS--HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-Y------------PCKKDD   65 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH--HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS-E------------ECCSCS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHH--hCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-C------------CCCCCC
Confidence            6899  9999999999999999999  888888 9988  999999999999998   33 3            4666  


Q ss_pred             -ccccccCchhHHHHHHHhc
Q 018586           84 -CMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        84 -C~k~F~~~s~L~~H~~~h~  102 (353)
                       |++.|...+.|..|+++|+
T Consensus        66 ~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           66 SCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             SCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCccCCHHHHHHHHHhcC
Confidence             9999999999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.11  E-value=5.3e-12  Score=101.53  Aligned_cols=82  Identities=18%  Similarity=0.171  Sum_probs=71.3

Q ss_pred             HHhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHHHhcCCCCCC
Q 018586           33 HMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (353)
Q Consensus        33 H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~  108 (353)
                      |..+  |.|+++ .|..|++.|...+.|..|+   .++.++          .|+.|+++|...+.|..|+++|++++||.
T Consensus        13 ~~~~--h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~----------~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   80 (133)
T 2lt7_A           13 YELI--VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKY----------PCRYCEKVFPLAEYRTKHEIHHTGERRYQ   80 (133)
T ss_dssp             EEEE--ETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCE----------ECSSSSCEESSHHHHHHHHHHHHTCCCEE
T ss_pred             ceee--cCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCe----------eCCccCeecccccchhhhccccCCCcccc
Confidence            4455  788888 9999999999999999999   455544          58899999999999999999999999999


Q ss_pred             cccCCcchhhhhhhcccc
Q 018586          109 FEKTLSNAESQKKISGAI  126 (353)
Q Consensus       109 c~~~~~~~~~~~~~~~~~  126 (353)
                      |+.|+..+.....+..++
T Consensus        81 C~~C~k~F~~~~~L~~H~   98 (133)
T 2lt7_A           81 CLACGKSFINYQFMSSHI   98 (133)
T ss_dssp             ESSSCCEESSHHHHHHHH
T ss_pred             CCCCCCCcCCHHHHHHHh
Confidence            999998887777777655

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.11  E-value=1.9e-11  Score=83.85  Aligned_cols=47  Identities=19%  Similarity=0.296  Sum_probs=42.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccCCcchhhhhhhcccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                      .|++||++|.+.+.|..|+++|++++||.|+.|+..+...+.+..+.
T Consensus         6 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~   52 (60)
T 4gzn_C            6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL   52 (60)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHG
T ss_pred             cCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHh
Confidence            58999999999999999999999999999999998888777776654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.09  E-value=1.8e-10  Score=84.56  Aligned_cols=80  Identities=20%  Similarity=0.300  Sum_probs=63.1

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCCccccCcccCCChHHHHhccCCCCCCCCCCcccccccccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNL   83 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~   83 (353)
                      +..++|++++||.|+.|++.|.....|..|++.  |.....                    .+.++          .|+.
T Consensus         5 ~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~--~~~~~~--------------------~~~~~----------~C~~   52 (86)
T 1x6h_A            5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR--YHDPNF--------------------VPAAF----------VCSK   52 (86)
T ss_dssp             CCSTTCCCCCCEECSSSSCEESSHHHHHHHHHH--TTCSSC--------------------CCCCE----------ECSS
T ss_pred             cccceecCCCCCcCCCCCCccCCHHHHHHHHHH--hcCCcC--------------------CCcce----------ECCC
Confidence            347789999999999999999999999999987  433210                    01111          4778


Q ss_pred             ccccccCchhHHHHHHHhcCCCCCCcccCCcc
Q 018586           84 CMNIFDSPSSLIKHKEACSLSAPVPFEKTLSN  115 (353)
Q Consensus        84 C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~  115 (353)
                      |++.|...+.|..|+++|++++++.|..|+..
T Consensus        53 C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~   84 (86)
T 1x6h_A           53 CGKTFTRRNTMARHADNCAGPDGVEGENSGPS   84 (86)
T ss_dssp             SCCEESCHHHHHHHHHHCCCCCSCCCCCCCCC
T ss_pred             CCChhCCHHHHHHHHHHccCCCCcccCCCCCC
Confidence            88889999999999999999999999888754

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.03  E-value=2.1e-10  Score=81.51  Aligned_cols=66  Identities=26%  Similarity=0.482  Sum_probs=53.8

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCCccccCcccCCChHHHHhccCCCCCCCCCCcccccccccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNL   83 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~   83 (353)
                      ...+.|++++||.|+.|++.|.....|..|+++  |.++++                      +            .|+.
T Consensus         4 ~~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~~~----------------------~------------~C~~   47 (72)
T 1x6e_A            4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRV--HTGEKP----------------------Y------------KCLE   47 (72)
T ss_dssp             CCCCTTTTCCCEECSSSCCEESSHHHHHHHHHG--GGCSCC----------------------E------------ECSS
T ss_pred             CCCcccCCCCCccCCCCCCccCCHHHHHHHHHh--cCCCCC----------------------e------------ECCC
Confidence            457889999999999999999999999999998  776543                      1            3666


Q ss_pred             ccccccCchhHHHHHHHhcCCC
Q 018586           84 CMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        84 C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      |++.|...+.|..|+++|+++.
T Consensus        48 C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           48 CGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             SCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCcccCCHHHHHHHHHhcCCCC
Confidence            7777888888888888887653

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.02  E-value=8.4e-11  Score=86.38  Aligned_cols=47  Identities=15%  Similarity=0.158  Sum_probs=39.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCC----CCCCcccCCcchhhhhhhcccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS----APVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~----k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                      .|+.|++.|...+.|..|++.|+.+    ++|.|+.|...+.....+..+.
T Consensus        17 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~   67 (86)
T 1x6h_A           17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA   67 (86)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             cCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHH
Confidence            5888999999999999999988765    8999999998877777666654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.01  E-value=3.1e-10  Score=80.11  Aligned_cols=66  Identities=29%  Similarity=0.417  Sum_probs=54.8

Q ss_pred             CCCCCCceeeccccccccChHHHHHHHhhhcCCCCCCccccCcccCCChHHHHhccCCCCCCCCCCcccccccccccccc
Q 018586            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNI   87 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C~k~   87 (353)
                      +|++++||.|+.|++.|.....|..|+++  |.++++                      +            .|+.|++.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~----------------------~------------~C~~C~~~   46 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERI--HCTDRP----------------------F------------KCNYCSFD   46 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGG--GCCSCS----------------------E------------ECSSSSCE
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCC----------------------E------------eCCCCCCc
Confidence            68899999999999999999999999998  776543                      1            36677788


Q ss_pred             ccCchhHHHHHHHhcCCCCCCc
Q 018586           88 FDSPSSLIKHKEACSLSAPVPF  109 (353)
Q Consensus        88 F~~~s~L~~H~~~h~~~k~~~c  109 (353)
                      |...+.|..|+++|++++|.+-
T Consensus        47 f~~~~~L~~H~~~h~~~~p~p~   68 (70)
T 1x5w_A           47 TKQPSNLSKHMKKFHGDMSGPS   68 (70)
T ss_dssp             ESSHHHHHHHHHHHHSSSCCSS
T ss_pred             cCCHHHHHHHHHHHhCCCCCCC
Confidence            8888888888888888887653

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.98  E-value=2.1e-10  Score=79.92  Aligned_cols=38  Identities=18%  Similarity=0.383  Sum_probs=31.4

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcC-CCCCC
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYH-SVHQP   44 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h-~~~~~   44 (353)
                      +++|++++||.|+.|++.|.....|..|++.+ | +++++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~-H~~~~~~   40 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTS-HKRNVKV   40 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHH-SSSSCCC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHH-cCCCCcC
Confidence            46899999999999999999999999999863 4 44444

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=9.1e-10  Score=82.46  Aligned_cols=70  Identities=17%  Similarity=0.261  Sum_probs=55.0

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhccCCCCCCCCCCccccccccccccccccCc
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSP   91 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C~k~F~~~   91 (353)
                      ..|.|+.|++.|.....|.+|++.+ |.++++ .+..|..                           ..|+.|+++|...
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~-H~~~~~~~~~~c~~---------------------------~~C~~C~k~f~~~   75 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTME-HVGGPEQNNHVCYW---------------------------EECPREGKSFKAK   75 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHT-TTCCTTCSCCCCCC---------------------------TTCSSTTCCCSSH
T ss_pred             CCCcccccccccCCHHHHHHHHHHh-ccCCCCCCccceec---------------------------cCCCCCCcccCCH
Confidence            3466888999999999999998752 666554 3333310                           1588999999999


Q ss_pred             hhHHHHHHHhcCCCCCCcc
Q 018586           92 SSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        92 s~L~~H~~~h~~~k~~~c~  110 (353)
                      +.|..|+++|++++||.|+
T Consensus        76 ~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           76 YKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             HHHHHHHHHHHTCCCCSSC
T ss_pred             HHHHHHHHhcCCCCCCCCC
Confidence            9999999999999999996

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.97  E-value=6e-10  Score=82.03  Aligned_cols=56  Identities=23%  Similarity=0.341  Sum_probs=44.7

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~   63 (353)
                      ...++..++|.|+.|++.|..+..|.+|+++  |+++++ .|..|++.|.++..|..|+
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~--H~~~k~~~C~~C~k~F~~~~~L~~H~   76 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRL--LHAAQVFPCKYCPATFYSSPGLTRHI   76 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHT--TSCSSSEECTTSSCEESSHHHHHHHH
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhh--ccCCCccCCCCCCCEeCCHHHHHHhC
Confidence            3456778999999999999999999999999  888777 6666666666666666664

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=1.2e-10  Score=88.22  Aligned_cols=70  Identities=17%  Similarity=0.298  Sum_probs=46.2

Q ss_pred             HHHHHHHhhhcCCCCCC-ccccCcccCC-ChHHHHhcc---CC-CCCCCCCCccccccccccccccccCchhHHHHHHHh
Q 018586           28 DHLIEHMKISYHSVHQP-KCAVCQKLSK-SFESLREHL---TG-PLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEAC  101 (353)
Q Consensus        28 ~~l~~H~~~~~h~~~~~-~C~~C~~~f~-~~~~l~~H~---~~-~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h  101 (353)
                      +.+..|+++  |.++++ .|..|++.|. ....|..|+   .+ +.++          .|+.|++.|...+.|..|+++|
T Consensus        10 ~~~~~h~~~--h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~----------~C~~C~k~F~~~~~L~~H~~~h   77 (98)
T 2gqj_A           10 GPEEQWQRA--IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDAL----------KCQHCRKQFKSKAGLNYHTMAE   77 (98)
T ss_dssp             CSCSHHHHT--TTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHH----------SCSSSCCCCSCHHHHHHHHHHH
T ss_pred             CcHHHHHHH--hccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCE----------ECCCCCCccCCHHHHHHHHHHH
Confidence            334455555  555555 5555555555 555555555   11 1111          4788999999999999999999


Q ss_pred             cCCCCCCc
Q 018586          102 SLSAPVPF  109 (353)
Q Consensus       102 ~~~k~~~c  109 (353)
                      ++++|...
T Consensus        78 ~~~kp~~~   85 (98)
T 2gqj_A           78 HSAKPSDA   85 (98)
T ss_dssp             SCSCSSCC
T ss_pred             cCCCCCCC
Confidence            99998554

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2.4e-11  Score=94.78  Aligned_cols=92  Identities=13%  Similarity=0.070  Sum_probs=74.5

Q ss_pred             hHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhccC--CCCCCCCCCccccccccccccccc--cCchhHHHHHHHh
Q 018586           27 KDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLT--GPLSKAHCSGIFSDRGCNLCMNIF--DSPSSLIKHKEAC  101 (353)
Q Consensus        27 ~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~~--~~~~c~~Cgk~f~~~~C~~C~k~F--~~~s~L~~H~~~h  101 (353)
                      .+.|..|+++  |+++++ .|..|++.|.....|..|+.  +...+..+      ..|+.|++.|  ...+.|..|+++|
T Consensus         4 ~~~l~~H~~~--H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~------~~C~~C~~~f~f~~~~~l~~H~~~H   75 (115)
T 2dmi_A            4 GSSGKLYGSI--FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNH------ETDNNNPKRWSKPRKRSLLEMEGKE   75 (115)
T ss_dssp             CCCCCCCCCC--CCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCC------CCCCCCCSCCSSCCCCCCCCCCCSC
T ss_pred             chhhhhheee--eCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCC------ccCCCCCcccccccHHHHHHHhhcc
Confidence            3457788988  999999 99999999999999999982  23222111      1388999988  8999999999999


Q ss_pred             cCCCCCCcccCCcchhhhhhhcccc
Q 018586          102 SLSAPVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus       102 ~~~k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                      ++++||.|+.|+..+.....+..+.
T Consensus        76 ~~~~~~~C~~C~k~f~~~~~L~~H~  100 (115)
T 2dmi_A           76 DAQKVLKCMYCGHSFESLQDLSVHM  100 (115)
T ss_dssp             CCCSSCBCSSSCCBCSSHHHHHHHH
T ss_pred             CCCcceECCCCCCccCCHHHHHHHH
Confidence            9999999999998877777666554

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.93  E-value=1e-09  Score=78.91  Aligned_cols=64  Identities=16%  Similarity=0.290  Sum_probs=50.1

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHh-hhcCCCC-CCccccCcccCCChHHHHhccCCCCCCCCCCcccccccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVH-QPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGC   81 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~h~~~-~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C   81 (353)
                      +..++|++++||.|+.|++.|.....|..|++ .  |.++ ++                      +            .|
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~--h~~~~~~----------------------~------------~C   48 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQK--HTENVAK----------------------F------------HC   48 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHH--SSSSCSS----------------------E------------EC
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHh--cCCCCCc----------------------c------------CC
Confidence            45789999999999999999999999999997 5  6643 22                      1            36


Q ss_pred             ccccccccCchhHHHHHHHhcC
Q 018586           82 NLCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~~  103 (353)
                      +.|++.|...+.|..|+++|++
T Consensus        49 ~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A           49 PHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             SSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCCCCccCCHHHHHHHHHHhCC
Confidence            6677777777888888877553

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=98.93  E-value=4.4e-10  Score=88.53  Aligned_cols=74  Identities=20%  Similarity=0.351  Sum_probs=60.4

Q ss_pred             CC-ccc--cCcccCCChHHHHhccC--CCCCCCCCCccccccccccccccccCchhHHHHHHHhcCCCCCCccc--CCcc
Q 018586           43 QP-KCA--VCQKLSKSFESLREHLT--GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK--TLSN  115 (353)
Q Consensus        43 ~~-~C~--~C~~~f~~~~~l~~H~~--~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~--~~~~  115 (353)
                      ++ .|.  .|++.|.....|..|+.  ++.+.          .|+.|++.|...+.|..|+++|+++++|.|+.  |+..
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~   73 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPRVH----------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKR   73 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGGGSCCCE----------ECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCE
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHHcCCCCe----------ECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCc
Confidence            45 888  89999999999999982  22222          58999999999999999999999999999974  9877


Q ss_pred             hhhhhhhcccc
Q 018586          116 AESQKKISGAI  126 (353)
Q Consensus       116 ~~~~~~~~~~~  126 (353)
                      +.....+..+.
T Consensus        74 f~~~~~l~~H~   84 (124)
T 1ubd_C           74 FSLDFNLRTHV   84 (124)
T ss_dssp             ESCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            76666666554

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.91  E-value=1.3e-09  Score=81.73  Aligned_cols=78  Identities=24%  Similarity=0.355  Sum_probs=65.3

Q ss_pred             CCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHHHhcCCCCCCcccCCc
Q 018586           39 HSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLS  114 (353)
Q Consensus        39 h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~  114 (353)
                      +.++++ .|..|++.|.....|..|+   .+..++          .|+.|++.|.....|..|+++|+++++|.|+.|..
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   72 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPY----------KCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPY   72 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSE----------ECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCE----------eCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCC
Confidence            456677 9999999999999999998   223332          58899999999999999999999999999999998


Q ss_pred             chhhhhhhcccc
Q 018586          115 NAESQKKISGAI  126 (353)
Q Consensus       115 ~~~~~~~~~~~~  126 (353)
                      .+.....+..+.
T Consensus        73 ~f~~~~~l~~H~   84 (96)
T 2dmd_A           73 ASRNSSQLTVHL   84 (96)
T ss_dssp             EESSHHHHHHHH
T ss_pred             ccCCHHHHHHHH
Confidence            877766665544

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=5.2e-10  Score=80.72  Aligned_cols=69  Identities=20%  Similarity=0.356  Sum_probs=52.0

Q ss_pred             CCCCCCceeeccccccccChHHHHHHHhhhcCCCCCCccccCcccCCChHHHHhccCCCCCCCCCCcccccccccccccc
Q 018586            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNI   87 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C~k~   87 (353)
                      +|++++||.|+.|++.|.....|..|+++  |.+..                     ++.++          .|+.|++.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~~---------------------~~~~~----------~C~~C~k~   47 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRK--HAETV---------------------AALRF----------PCEFCGKR   47 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHH--HHHHT---------------------TTCCE----------ECTTTCCE
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHH--hhccC---------------------CCccc----------CCCCCCch
Confidence            58999999999999999999999999998  65410                     01111          46778888


Q ss_pred             ccCchhHHHHHH-HhcCCCCCCc
Q 018586           88 FDSPSSLIKHKE-ACSLSAPVPF  109 (353)
Q Consensus        88 F~~~s~L~~H~~-~h~~~k~~~c  109 (353)
                      |...+.|..|++ .|.++++...
T Consensus        48 f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A           48 FEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             ESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             hCCHHHHHHHHHHhCCCCCCCcc
Confidence            888888888984 4666666443

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=98.88  E-value=1.5e-09  Score=89.08  Aligned_cols=86  Identities=16%  Similarity=0.242  Sum_probs=71.0

Q ss_pred             CCCC-ccccCcccCCChHHHHhcc-C---C--C--------CCCCCCCcccccc----------------cccc--cccc
Q 018586           41 VHQP-KCAVCQKLSKSFESLREHL-T---G--P--------LSKAHCSGIFSDR----------------GCNL--CMNI   87 (353)
Q Consensus        41 ~~~~-~C~~C~~~f~~~~~l~~H~-~---~--~--------~~c~~Cgk~f~~~----------------~C~~--C~k~   87 (353)
                      .... .|..|++.|.....|..|+ .   +  +        +.|..|++.|...                .|+.  |++.
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~  101 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKI  101 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCE
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCc
Confidence            3444 9999999999999999998 1   1  1        6799999999865                3987  9999


Q ss_pred             ccCchhHHHHHHHhcCCCCCCccc--CCcchhhhhhhcccc
Q 018586           88 FDSPSSLIKHKEACSLSAPVPFEK--TLSNAESQKKISGAI  126 (353)
Q Consensus        88 F~~~s~L~~H~~~h~~~k~~~c~~--~~~~~~~~~~~~~~~  126 (353)
                      |...+.|..|+++|++++||.|+.  |+..+.....+..+.
T Consensus       102 f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~  142 (155)
T 2rpc_A          102 FARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM  142 (155)
T ss_dssp             ESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSS
T ss_pred             cCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHH
Confidence            999999999999999999999986  887776666666554

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.87  E-value=1.3e-09  Score=82.21  Aligned_cols=75  Identities=16%  Similarity=0.232  Sum_probs=60.0

Q ss_pred             ccccChHHHHHHHhhhcCCCCCC-ccccCcccC-CChHHHHhcc--CCCCCCCCCCccccccccccccccccCchhHHHH
Q 018586           22 KQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLS-KSFESLREHL--TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKH   97 (353)
Q Consensus        22 k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f-~~~~~l~~H~--~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H   97 (353)
                      ..|...+.+..|++.  |.++++ .|..|++.| .....|..|+  .++.++          .|.+|+++|...+.|..|
T Consensus        14 ~~~~~~~~~~~~~~~--~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~----------~C~~Cgk~F~~~~~L~~H   81 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLE--IVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMF----------TCHHCGKQLRSLAGMKYH   81 (96)
T ss_dssp             CSSCTTCHHHHHHHH--HHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCC----------CCSSSCCCCSSHHHHHHH
T ss_pred             CCCCCchHHHHHHHH--hcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCe----------ECCCCCCeeCCHHHHHHH
Confidence            356777888888888  777788 999999999 8999999998  233333          588899999999999999


Q ss_pred             -HHHhcCCCCCC
Q 018586           98 -KEACSLSAPVP  108 (353)
Q Consensus        98 -~~~h~~~k~~~  108 (353)
                       +++|+++..++
T Consensus        82 ~~~~H~~~p~~~   93 (96)
T 2ctd_A           82 VMANHNSLPSGP   93 (96)
T ss_dssp             HHHHTCCCSSCS
T ss_pred             hHHhcCCCCCCC
Confidence             99998655444

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.87  E-value=7.7e-10  Score=74.53  Aligned_cols=50  Identities=30%  Similarity=0.573  Sum_probs=33.7

Q ss_pred             CCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhc
Q 018586           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH   62 (353)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H   62 (353)
                      |++||.|+.|++.|.....|..|+++  |.++++ .|..|++.|.....|..|
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H   51 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRT--HTGEKPYKCEFCEYAAAQKTSLRYH   51 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHH--HHCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHH--cCCCCCcCCCCCcchhCCHHHHHHH
Confidence            46899999999999999999999998  777665 554444444444444444

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.85  E-value=8.7e-10  Score=85.02  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             CCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHHHhcCCCCCCcccCCc
Q 018586           39 HSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLS  114 (353)
Q Consensus        39 h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~  114 (353)
                      |+++++ .| .|++.|.....|..|+   .+..++          .|+.|++.|.....|..|+++|+++++|.|+.|..
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   73 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPY----------GCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK   73 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSE----------ECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCC
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCc----------cCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcc
Confidence            888888 99 8999999999999998   333333          58899999999999999999999999999999987


Q ss_pred             chhhhhhhcccc
Q 018586          115 NAESQKKISGAI  126 (353)
Q Consensus       115 ~~~~~~~~~~~~  126 (353)
                      .+.....+..++
T Consensus        74 ~f~~~~~l~~H~   85 (110)
T 2csh_A           74 RFMWRDSFHRHV   85 (110)
T ss_dssp             EESCHHHHHHHH
T ss_pred             hhcCHHHHHHHH
Confidence            766666665544

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.85  E-value=1.9e-09  Score=76.54  Aligned_cols=61  Identities=25%  Similarity=0.569  Sum_probs=48.6

Q ss_pred             CCCCCCCCCCCCCceeec--cccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc
Q 018586            1 MDTEAELPKRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (353)
Q Consensus         1 ~~~~~~~~h~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~   63 (353)
                      |++.....|+++++|.|+  .|++.|.....|..|+++  |.++++ .|..|++.|.....|..|+
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   69 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI--HTGQKPFQCRICMRNFSRSDHLTTHI   69 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHH
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHh--hCCCCCeECCCCCchhCCHHHHHHHH
Confidence            456667889999999997  699999999999999999  887776 7777776666666666664

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.85  E-value=3.1e-09  Score=70.92  Aligned_cols=49  Identities=33%  Similarity=0.527  Sum_probs=44.1

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHh-hhcCCCCCC-ccccCcccCCC
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP-KCAVCQKLSKS   55 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~h~~~~~-~C~~C~~~f~~   55 (353)
                      ...+|++++||.|+.|++.|.....|.+|++ +  |+++++ .|..|++.|.+
T Consensus         3 ~~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~--H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQV--HTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHT--SCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHh--cCCCCCccCCCCCCCCCC
Confidence            3457889999999999999999999999997 8  999888 99999998876

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1.1e-11  Score=88.21  Aligned_cols=68  Identities=18%  Similarity=0.126  Sum_probs=47.8

Q ss_pred             HHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhccCCCCCCCCCCccccccccccccccccCchhHHHHHHHhcCCCCC
Q 018586           29 HLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV  107 (353)
Q Consensus        29 ~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~~k~~  107 (353)
                      .|..|+++  |.++++ .|..|++.|.....|..  .+++            .|+.|++.|...+.|..|+++|++++||
T Consensus         5 ~l~~H~~~--h~~~~~~~C~~C~k~f~~~~~l~~--~~~~------------~C~~C~~~f~~~~~l~~H~~~H~~~~~~   68 (73)
T 2ctu_A            5 SSGKRQKI--HLGDRSQKCSKCGIIFIRRSTLSR--RKTP------------MCEKCRKDSCQEAALNKDEGNESGKKTS   68 (73)
T ss_dssp             SCCCCCCC--CCCCSEEECSSSCCEEECCCCCCC--SSSC------------CCHHHHHTCSCCCSSCCCSSCCCCCCCS
T ss_pred             hHHHHHHH--hCCCCCeeCCcccchhCCHHHhCc--CCCC------------CCCCCChhhcCHHHHHHHHHhhcCCCCC
Confidence            34455555  555555 66666666555544433  1122            5889999999999999999999999999


Q ss_pred             CcccC
Q 018586          108 PFEKT  112 (353)
Q Consensus       108 ~c~~~  112 (353)
                      .|+.|
T Consensus        69 ~C~~C   73 (73)
T 2ctu_A           69 GPSSG   73 (73)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            99865

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.82  E-value=5.6e-10  Score=88.74  Aligned_cols=80  Identities=19%  Similarity=0.225  Sum_probs=53.5

Q ss_pred             CCceeecccccccc------ChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhccC-CCCCCCCCCcccccccccc
Q 018586           12 TARHKCVACYKQFK------RKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLT-GPLSKAHCSGIFSDRGCNL   83 (353)
Q Consensus        12 ~k~~~C~~C~k~f~------~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~~-~~~~c~~Cgk~f~~~~C~~   83 (353)
                      ++++.|+.|++.|.      ....|..|+ .  |+++++ .|..|++.|.....|..|+. -..++          .|+.
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~--h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~----------~C~~  105 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-A--SKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK----------VCPV  105 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-H--HHHHCSEECTTTCCEESSHHHHHHHHHHTCCCC----------BCTT
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-H--hCCCCCeECCCCCcccCCHhHHHHHHHHCCCCC----------CCCC
Confidence            34556666665554      445555565 3  556666 78888888888877777771 12222          4777


Q ss_pred             ccccccCchhHHHHHHHhcCC
Q 018586           84 CMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        84 C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      |+++|...+.|..|+++|++.
T Consensus       106 C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          106 CKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCcccCCHHHHHHHHHHHCCc
Confidence            888888888888888888765

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.82  E-value=2.2e-09  Score=80.26  Aligned_cols=77  Identities=19%  Similarity=0.323  Sum_probs=64.7

Q ss_pred             CCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHHHhcCC--CCCCcccCC
Q 018586           40 SVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLS--APVPFEKTL  113 (353)
Q Consensus        40 ~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~~--k~~~c~~~~  113 (353)
                      +++++ .|..|++.|.....|..|+   .++.++          .|+.|++.|...+.|..|+++|+++  ++|.|+.|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~   72 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPY----------SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCG   72 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSE----------ECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCC----------cCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCcc
Confidence            56677 9999999999999999998   333333          5889999999999999999999987  999999998


Q ss_pred             cchhhhhhhcccc
Q 018586          114 SNAESQKKISGAI  126 (353)
Q Consensus       114 ~~~~~~~~~~~~~  126 (353)
                      ..+.....+..++
T Consensus        73 ~~f~~~~~L~~H~   85 (95)
T 2yt9_A           73 KGFSRPDHLNGHI   85 (95)
T ss_dssp             CCBSSHHHHHHHH
T ss_pred             chhCCHHHHHHHH
Confidence            8877776666554

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.81  E-value=2.7e-09  Score=75.21  Aligned_cols=47  Identities=15%  Similarity=0.234  Sum_probs=41.3

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccCCcchhhhhhhcccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.|...+.....+..+.
T Consensus        11 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~   57 (70)
T 1x5w_A           11 KCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM   57 (70)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHH
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHH
Confidence            58999999999999999999999999999999998877766665544

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.81  E-value=3.5e-09  Score=76.28  Aligned_cols=47  Identities=15%  Similarity=0.149  Sum_probs=40.2

Q ss_pred             ccccccccccCchhHHHHHH-HhcCCCCCCccc--CCcchhhhhhhcccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKE-ACSLSAPVPFEK--TLSNAESQKKISGAI  126 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~-~h~~~k~~~c~~--~~~~~~~~~~~~~~~  126 (353)
                      .|+.|++.|...+.|..|++ .|.+++||.|+.  |+..+.....+..+.
T Consensus        11 ~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~   60 (79)
T 2dlk_A           11 DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM   60 (79)
T ss_dssp             SSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHH
T ss_pred             CCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHH
Confidence            35679999999999999999 699999999998  988877777766654

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4.5e-09  Score=67.44  Aligned_cols=45  Identities=22%  Similarity=0.350  Sum_probs=41.3

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      |+..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eml_A            1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI--HSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCSEECSSSCCEESSHHHHHHHHGG--GSSCCCSCSSCC
T ss_pred             CCccCCcCCCCCeeCCCcCCccCCHHHHHHHHHH--hcCCCCCCCCCC
Confidence            4567899999999999999999999999999999  999888 98876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4.5e-09  Score=67.46  Aligned_cols=45  Identities=22%  Similarity=0.283  Sum_probs=41.5

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         1 ~~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ysp_A            1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV--HTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCSEEETTTTEEESCHHHHHHHHTT--SCSCCSSCCSCC
T ss_pred             CCCCcCCCCCCCeECCCCCCccCCHHHHHHHHHh--hCCCCCCCCCCC
Confidence            4567899999999999999999999999999999  999888 98877

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=3.8e-09  Score=67.83  Aligned_cols=45  Identities=18%  Similarity=0.229  Sum_probs=41.3

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..+.|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         1 ~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2elz_A            1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV--HMGEKTSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGG--GGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCCeeCcccCchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3567899999999999999999999999999999  999888 98877

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.81  E-value=3.5e-09  Score=67.99  Aligned_cols=45  Identities=27%  Similarity=0.408  Sum_probs=41.5

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ely_A            1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHH--HSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCCcccCccCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4567899999999999999999999999999999  999888 99877

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.80  E-value=5.2e-09  Score=67.10  Aligned_cols=45  Identities=20%  Similarity=0.362  Sum_probs=41.4

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em9_A            1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKHQRV--HSGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCSCCCCCSEECSSSCCEESSHHHHHHHGGG--GTSCCCCSTTCC
T ss_pred             CCCCCCCCCCcCeECCccccccCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            4567899999999999999999999999999999  999888 98876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=5.1e-09  Score=67.19  Aligned_cols=44  Identities=23%  Similarity=0.360  Sum_probs=40.8

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTT--TCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhh--cCCCCCCCCCCC
Confidence            557899999999999999999999999999999  999888 99877

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=4.6e-09  Score=67.41  Aligned_cols=45  Identities=20%  Similarity=0.291  Sum_probs=41.4

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         1 ~~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2en6_A            1 GSSGSSGSGEKPYGCNECGKTFSQKSILSAHQRT--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCSSCCEEETTTTEEESSHHHHHHHHHH--HSSCCCSSSCCC
T ss_pred             CCCCCccCCCcCeECCCCCcccCchHHHHHHHHH--cCCCCCCCCCCC
Confidence            3567899999999999999999999999999999  999888 99876

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=6.2e-09  Score=66.79  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=40.9

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS--HSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHH--SCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            457899999999999999999999999999999  999988 99877

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=5e-09  Score=67.23  Aligned_cols=45  Identities=20%  Similarity=0.286  Sum_probs=41.3

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2em7_A            1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTHHMV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCCCSEECSSSCCEESCHHHHHHHGGG--GTTCCCSSTTCC
T ss_pred             CCCCCCCCCCcCccCCCccchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3567899999999999999999999999999999  999888 98876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=4.6e-09  Score=67.41  Aligned_cols=45  Identities=24%  Similarity=0.375  Sum_probs=41.2

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emy_A            1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRT--HAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSCCEECSSSCCEESSHHHHHHHHHH--HTTSCCSCSSCC
T ss_pred             CCCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4567899999999999999999999999999999  999888 88876

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.79  E-value=4.4e-09  Score=67.53  Aligned_cols=45  Identities=22%  Similarity=0.427  Sum_probs=41.2

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emk_A            1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHH--HSSCCCSSCCCC
T ss_pred             CCCCCccCCCCceECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4567899999999999999999999999999999  999888 98876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4.9e-09  Score=67.31  Aligned_cols=45  Identities=27%  Similarity=0.350  Sum_probs=41.2

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytq_A            1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT--HSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTT--TCCSCSSCCCCC
T ss_pred             CCCCcCcCCCCCcCCCccChhhCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            3567899999999999999999999999999999  999888 98876

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=98.79  E-value=3.8e-09  Score=80.69  Aligned_cols=77  Identities=16%  Similarity=0.235  Sum_probs=64.0

Q ss_pred             CCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHHHhcCCCCCCcccCCcc
Q 018586           40 SVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSN  115 (353)
Q Consensus        40 ~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~  115 (353)
                      ..+++ .|..|++.|.....|..|+   .+..++          .|+.|++.|.....|..|+++|+++++|.|+.|...
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   82 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPY----------TCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKG   82 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCC----------BCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCc----------CCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCc
Confidence            34556 9999999999999999998   333333          588899999999999999999999999999999887


Q ss_pred             hhhhhhhcccc
Q 018586          116 AESQKKISGAI  126 (353)
Q Consensus       116 ~~~~~~~~~~~  126 (353)
                      +.....+..+.
T Consensus        83 f~~~~~L~~H~   93 (106)
T 2ee8_A           83 FCQSRTLAVHK   93 (106)
T ss_dssp             CSSHHHHHHHH
T ss_pred             ccCHHHHHHHH
Confidence            77666665544

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.78  E-value=6.6e-09  Score=66.58  Aligned_cols=44  Identities=23%  Similarity=0.328  Sum_probs=40.7

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS--HTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGG--SSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            457889999999999999999999999999999  999988 98876

>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}

Probab=98.78  E-value=3.5e-08  Score=83.12  Aligned_cols=154  Identities=16%  Similarity=0.183  Sum_probs=93.2

Q ss_pred             CCCceeeccCccccccCCCCccceeEEeeecCCCCeEEeeec--cCCCCcccccc-c-cCCCCHhhhcCCCChHHHHHHH
Q 018586          133 RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYV--QPQLPVTNYRY-E-VTGLTEEDIKNAMPLKEVKDKI  208 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv--~P~~~i~~~~~-~-~~GIt~e~l~~~~~~~~v~~~~  208 (353)
                      ..+.-+++|||+|+.+.  .+++ ..+.+|.++|...|....  .|.. +.++.. . +.++.........++.++..+|
T Consensus        20 ~~m~r~FlDTEFt~d~~--~~eL-ISIGlV~EdGrEFYav~~d~d~~~-~~~wVr~~Vlp~L~~~~~~~~~s~~~i~~~L   95 (190)
T 4hec_A           20 GSMVRYFYDTEFIEDGH--TIEL-ISIGVVAEDGREYYAVSTEFDPER-AGSWVRTHVLPKLPPPASQLWRSRQQIRLDL   95 (190)
T ss_dssp             -CEEEEEEEEEEEECSS--CEEE-EEEEEEETTSCEEEEEETTSCGGG-CCHHHHHHTGGGSCCTTSTTEECHHHHHHHH
T ss_pred             CceeEEEEeeeecCCCC--CCCE-EEEEEEcCCCCEEEEEecCCChhh-CcHHHHhccccCCCCCcccccCCHHHHHHHH
Confidence            34456899999998432  3445 477777899987665443  2332 233332 2 3666654455567999999999


Q ss_pred             HHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCc-C---C
Q 018586          209 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD-I---Q  284 (353)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~-~---~  284 (353)
                      .+||....         .....|++|+..+|..+|..-+..  +.+   +.+.+ |. ....|..+.+.. |.+ +   .
T Consensus        96 ~~FL~~~~---------~~~~eLwa~~~~yD~~~L~ql~g~--m~~---lP~~~-p~-~~~dlr~~~~~~-g~~~lp~~~  158 (190)
T 4hec_A           96 EEFLRIDG---------TDSIELWAWVGAYDHVALCQLWGP--MTA---LPPTV-PR-FTRELRQLWEDR-GCPRMPPRP  158 (190)
T ss_dssp             HHHTTTTS---------SCEEEEEESSCHHHHHHHHTTTSS--GGG---SCTTS-CS-SCEEHHHHHHHT-TCCCCCC--
T ss_pred             HHHHHhcC---------CCCCEEEEecccccHHHHHHHhcc--ccc---CCccc-ch-hhHHHHHHHHHc-CCCCCCCCC
Confidence            99993221         123469999999999999833221  111   11111 10 123466666655 443 1   1


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhc
Q 018586          285 SGVHDPYEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       285 ~~~H~Al~Da~~t~~l~~~~~~~  307 (353)
                      .+.|+||.||+..+..|+.+...
T Consensus       159 ~~~H~AL~DAR~n~~~~~~~~~~  181 (190)
T 4hec_A          159 RDVHDALVDARDQLRRFRLITST  181 (190)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHC-
T ss_pred             CCCcCcHHHHHHHHHHHHHHhCc
Confidence            22799999999999999998765

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.78  E-value=5.6e-09  Score=66.99  Aligned_cols=45  Identities=29%  Similarity=0.434  Sum_probs=41.1

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2ema_A            1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCTTSCCEECSSSCCEESSHHHHHHHHTG--GGCCCCCSSSCC
T ss_pred             CCCccCCCCCcCcCCCCCcchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3567899999999999999999999999999999  999888 98876

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=6.7e-09  Score=66.62  Aligned_cols=44  Identities=25%  Similarity=0.384  Sum_probs=40.6

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ...++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGG--TSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhh--cCCCCCCCCCCC
Confidence            457889999999999999999999999999999  999988 98876

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=5.5e-09  Score=66.99  Aligned_cols=45  Identities=22%  Similarity=0.240  Sum_probs=41.2

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eov_A            1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC--HTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHH--HSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCCccCCccChhhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            4567899999999999999999999999999999  998888 88876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=6.6e-09  Score=66.61  Aligned_cols=44  Identities=25%  Similarity=0.402  Sum_probs=40.6

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ...++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRI--HTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGG--GSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            457889999999999999999999999999999  999888 99876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=5.3e-09  Score=67.07  Aligned_cols=45  Identities=22%  Similarity=0.364  Sum_probs=41.2

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ytr_A            1 GSSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTT--TTTCSCCCSCCC
T ss_pred             CCCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3567899999999999999999999999999999  999888 98877

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=7.9e-09  Score=66.27  Aligned_cols=44  Identities=25%  Similarity=0.416  Sum_probs=40.6

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI--HTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHH--TSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            557889999999999999999999999999999  999888 88876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=6e-09  Score=66.85  Aligned_cols=45  Identities=20%  Similarity=0.254  Sum_probs=41.4

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      |+..+.|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2yso_A            1 GSSGSSGSREKSHQCRECGEIFFQYVSLIEHQVL--HMGQKNSGPSSG   46 (46)
T ss_dssp             CCCSCCSSCCCCEECTTTCCEESSHHHHHHHHHH--HSCCSCCCTTCC
T ss_pred             CCcccccCCCCCEEccccChhhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4567899999999999999999999999999999  999888 98876

>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*

Probab=98.77  E-value=3.2e-08  Score=98.97  Aligned_cols=145  Identities=15%  Similarity=0.144  Sum_probs=100.6

Q ss_pred             ceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcC
Q 018586          136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (353)
Q Consensus       136 ~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~~~  215 (353)
                      .++++|+||||.++... ++ ..+.++...|+..   ||.+..      .   +++   +.+++++.++++.|.+|+   
T Consensus        27 ~~va~DtEttgl~~~~~-~i-v~I~~~~~~g~~~---yip~~~------~---~~~---~~~~l~~~~vl~~L~~~L---   86 (605)
T 2kfn_A           27 PVFAFDTETDSLDNISA-NL-VGLSFAIEPGVAA---YIPVAH------D---YLD---APDQISRERALELLKPLL---   86 (605)
T ss_dssp             SSEEEEEEESCSCTTTC-CE-EEEEEEEETTEEE---EEECCC------C---STT---CCCCCCHHHHHHHHHHHH---
T ss_pred             CeEEEEEecCCCCcccC-ce-EEEEEEEcCCcEE---EEeccc------c---ccc---cccccCHHHHHHHHHHHH---
Confidence            68999999999864211 22 2333332345433   331111      0   111   234567899999999999   


Q ss_pred             CCCcccccCCCCCcEEEecccHHHHHHhc---CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCC-------C
Q 018586          216 ESTGRLMLDDGKARLLVGHGLEHDLDSLR---MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ-------S  285 (353)
Q Consensus       216 ~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~-------~  285 (353)
                               .+.+.++|+||+.||+.+|.   +..+ ..++||+..+..+.|...+++|+.|++.|+|+...       .
T Consensus        87 ---------~d~~i~kV~hnak~D~~~L~~~Gi~l~-~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gK  156 (605)
T 2kfn_A           87 ---------EDEKALKVGQNLKYDRGILANYGIELR-GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGK  156 (605)
T ss_dssp             ---------TCTTSCEEESSHHHHHHHHHTTTCCCC-CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCS
T ss_pred             ---------cCCCCeEEEECcHHHHHHHHHCCCCCC-CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCC
Confidence                     22345899999999999997   2222 35799999999988877789999999999876531       0


Q ss_pred             -----C--C-------CChHHHHHHHHHHHHHHHhchhh
Q 018586          286 -----G--V-------HDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       286 -----~--~-------H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                           .  .       |.|..||.++++||..+..+..+
T Consensus       157 g~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~  195 (605)
T 2kfn_A          157 GKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK  195 (605)
T ss_dssp             STTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 1  1       45889999999999999876544

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=98.77  E-value=1.9e-09  Score=78.13  Aligned_cols=71  Identities=20%  Similarity=0.292  Sum_probs=59.6

Q ss_pred             ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHHHhcCCCCCCcccCCcchhhhhh
Q 018586           45 KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKK  121 (353)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~  121 (353)
                      .|..|++.|.....|..|+   .+..++          .|+.|++.|...+.|..|+++|++++||.|+.|+..+.....
T Consensus         3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   72 (82)
T 2kmk_A            3 DCKICGKSFKRSSTLSTHLLIHSDTRPY----------PCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSN   72 (82)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHTCCCE----------ECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHH
T ss_pred             cCCCCcccccCchhHHHHHHHcCCCCCe----------eCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHH
Confidence            7999999999999999998   333333          588899999999999999999999999999999877666655


Q ss_pred             hccc
Q 018586          122 ISGA  125 (353)
Q Consensus       122 ~~~~  125 (353)
                      +..+
T Consensus        73 l~~H   76 (82)
T 2kmk_A           73 LITH   76 (82)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=7.5e-09  Score=66.32  Aligned_cols=45  Identities=18%  Similarity=0.194  Sum_probs=41.1

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2en8_A            1 GSSGSSGSGEKSHTCDECGKNFCYISALRIHQRV--HMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSSEECTTTCCEESSHHHHHHHHTT--TCCSCSSCCSCC
T ss_pred             CCccccCCCCCCeECCCcCcccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3457899999999999999999999999999999  999988 88876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=7.2e-09  Score=66.49  Aligned_cols=44  Identities=27%  Similarity=0.420  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..+.|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGG--TSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            456789999999999999999999999999999  999888 88876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=7.5e-09  Score=66.38  Aligned_cols=44  Identities=27%  Similarity=0.425  Sum_probs=40.5

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ...++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTT--TCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            446789999999999999999999999999999  999888 98876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.76  E-value=8.3e-09  Score=66.20  Aligned_cols=44  Identities=23%  Similarity=0.378  Sum_probs=40.8

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|.....|..|+++  |+++++ .|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM--HTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGG--GCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            457899999999999999999999999999999  999888 98876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=5.3e-09  Score=67.11  Aligned_cols=45  Identities=24%  Similarity=0.395  Sum_probs=41.0

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2emh_A            1 GSSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCSCCCSEECTTTCCEESSHHHHHHHHHH--HHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            3567899999999999999999999999999999  888888 88876

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.76  E-value=4.7e-09  Score=71.44  Aligned_cols=49  Identities=27%  Similarity=0.631  Sum_probs=39.3

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~   63 (353)
                      +||.|+.|++.|.....|..|+++  |.++++ .|..|++.|.....|..|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRS--HTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT--TTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHH--hCCCCCccCCCCCCccCCHHHHHHHH
Confidence            589999999999999999999999  887776 6666666666666666664

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=4.9e-09  Score=67.26  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=41.1

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      |+..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emp_A            1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSSCCCSEECSSSCCEESCHHHHHHHHHH--HHCCSCCSCCCC
T ss_pred             CCcccccCCCcCeECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3557899999999999999999999999999999  998888 98876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=98.76  E-value=2.3e-09  Score=79.27  Aligned_cols=75  Identities=20%  Similarity=0.370  Sum_probs=61.9

Q ss_pred             CCC-ccc--cCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHHHhcCCCCCCcccCCcc
Q 018586           42 HQP-KCA--VCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSN  115 (353)
Q Consensus        42 ~~~-~C~--~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~  115 (353)
                      +++ .|.  .|++.|.....|..|+   .++.+.          .|+.|++.|...+.|..|+++|++++||.|+.|+..
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   71 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPF----------QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK   71 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCE----------ECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCc----------cCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCch
Confidence            456 887  6999999999999998   333333          588899999999999999999999999999999888


Q ss_pred             hhhhhhhcccc
Q 018586          116 AESQKKISGAI  126 (353)
Q Consensus       116 ~~~~~~~~~~~  126 (353)
                      +.....+..+.
T Consensus        72 f~~~~~l~~H~   82 (90)
T 1a1h_A           72 FARSDERKRHT   82 (90)
T ss_dssp             ESSHHHHHHHH
T ss_pred             hCCHHHHHHHH
Confidence            77766665544

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=7.2e-09  Score=66.46  Aligned_cols=44  Identities=30%  Similarity=0.442  Sum_probs=40.7

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI--HTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHH--HTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHH--cCCCCCCCCCCC
Confidence            457899999999999999999999999999999  999888 98876

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=7.8e-09  Score=66.28  Aligned_cols=45  Identities=22%  Similarity=0.400  Sum_probs=40.8

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~~   46 (46)
T 2ep3_A            1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCCCSEECSSSCCEESSHHHHHHHHTT--TTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCCeECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4567899999999999999999999999999999  999888 88764

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=4.6e-09  Score=67.49  Aligned_cols=45  Identities=18%  Similarity=0.336  Sum_probs=41.1

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         1 g~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ytm_A            1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL--HTGQRPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHH--HHSCCCCCCCCC
T ss_pred             CCCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            3567899999999999999999999999999999  888888 98876

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=8.6e-09  Score=66.05  Aligned_cols=44  Identities=23%  Similarity=0.378  Sum_probs=40.6

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL--HSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHH--CCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHh--cCCCCCCCCCCC
Confidence            457889999999999999999999999999999  999988 98876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=5.5e-09  Score=67.06  Aligned_cols=44  Identities=23%  Similarity=0.297  Sum_probs=40.8

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +.+++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV--HTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHH--HHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHH--HcCCCCCCCCCC
Confidence            567899999999999999999999999999999  998888 88876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=9.8e-09  Score=65.77  Aligned_cols=44  Identities=23%  Similarity=0.288  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ...++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT--HVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHH--CCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            446789999999999999999999999999999  999888 98876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=7.6e-09  Score=66.34  Aligned_cols=44  Identities=20%  Similarity=0.345  Sum_probs=40.6

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTT--TTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            457899999999999999999999999999999  999888 99876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=7.5e-09  Score=66.34  Aligned_cols=44  Identities=30%  Similarity=0.508  Sum_probs=40.5

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHH--HSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            456889999999999999999999999999999  999888 99877

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=2e-09  Score=81.49  Aligned_cols=56  Identities=23%  Similarity=0.348  Sum_probs=52.5

Q ss_pred             CCCCCCCCceeecccccccc-ChHHHHHHHhhhcCCC-CCC-ccccCcccCCChHHHHhcc
Q 018586            6 ELPKRSTARHKCVACYKQFK-RKDHLIEHMKISYHSV-HQP-KCAVCQKLSKSFESLREHL   63 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~-~~~~l~~H~~~~~h~~-~~~-~C~~C~~~f~~~~~l~~H~   63 (353)
                      .+.|+++++|.|+.|++.|. ....|..|+++  |.+ +++ .|..|++.|..+..|..|+
T Consensus        16 ~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~--h~~~~~~~~C~~C~k~F~~~~~L~~H~   74 (98)
T 2gqj_A           16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEV--CQKLQDALKCQHCRKQFKSKAGLNYHT   74 (98)
T ss_dssp             HHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHH--HHHHHHHHSCSSSCCCCSCHHHHHHHH
T ss_pred             HHHhccCCCcCCCCCCCChhhhHHHHHHHHHH--HcCCCCCEECCCCCCccCCHHHHHHHH
Confidence            45789999999999999999 99999999999  777 777 9999999999999999998

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=9e-09  Score=66.00  Aligned_cols=44  Identities=20%  Similarity=0.336  Sum_probs=40.5

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV--HTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHH--TTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            456789999999999999999999999999999  999988 98876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=8.6e-09  Score=66.09  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=40.5

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHH--HSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHH--HCCCCCCCCCCC
Confidence            457889999999999999999999999999999  998888 98876

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.74  E-value=8.9e-09  Score=66.01  Aligned_cols=44  Identities=18%  Similarity=0.258  Sum_probs=40.5

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNV--HVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGG--GSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHH--cCCCCCcCCCCC
Confidence            456889999999999999999999999999999  999888 98876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=5.9e-09  Score=66.88  Aligned_cols=44  Identities=23%  Similarity=0.391  Sum_probs=40.5

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ...++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRV--HTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHH--HHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            457889999999999999999999999999999  888888 88876

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.74  E-value=1.5e-09  Score=83.40  Aligned_cols=78  Identities=15%  Similarity=0.142  Sum_probs=65.8

Q ss_pred             HhhhcCCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHHHhcCCCCCCc
Q 018586           34 MKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (353)
Q Consensus        34 ~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c  109 (353)
                      +++  |+++++ .|..|++.|.....|..|+   .+++            .|+.|++.|.....|..|++ |++++||.|
T Consensus         8 ~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~------------~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C   72 (107)
T 1wjp_A            8 ASP--VENKEVYQCRLCNAKLSSLLEQGSHERLCRNAA------------VCPYCSLRFFSPELKQEHES-KCEYKKLTC   72 (107)
T ss_dssp             CCC--CCCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSB------------CCTTTCCCBSSHHHHHHHHH-HCSTGGGEE
T ss_pred             Ccc--cCCCcCeECCCCCCccCCHHHHHHHHHHCCCCc------------cCCCCCCccCCHHHHHHHHH-cCCCCCccC
Confidence            455  888888 9999999999999999998   2233            57889999999999999996 999999999


Q ss_pred             ccCCcchhhhhhhcccc
Q 018586          110 EKTLSNAESQKKISGAI  126 (353)
Q Consensus       110 ~~~~~~~~~~~~~~~~~  126 (353)
                      +.|...+.....+..+.
T Consensus        73 ~~C~~~f~~~~~L~~H~   89 (107)
T 1wjp_A           73 LECMRTFKSSFSIWRHQ   89 (107)
T ss_dssp             GGGTEECSSHHHHHHHH
T ss_pred             ccccchhCCHHHHHHHH
Confidence            99988777766666544

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=6.2e-09  Score=66.78  Aligned_cols=44  Identities=20%  Similarity=0.421  Sum_probs=40.7

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGG--GSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            557889999999999999999999999999999  999888 98877

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=7.6e-09  Score=66.39  Aligned_cols=44  Identities=27%  Similarity=0.380  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..+.|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKR--HFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHH--HHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHH--HcCCCCCCCCCC
Confidence            456889999999999999999999999999999  888888 88876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=1.3e-08  Score=65.30  Aligned_cols=44  Identities=23%  Similarity=0.371  Sum_probs=40.3

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ...++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHT--TSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            346789999999999999999999999999999  999988 98876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=9.2e-09  Score=65.28  Aligned_cols=42  Identities=21%  Similarity=0.357  Sum_probs=39.1

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      .++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQT--HAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSHHHHHHHHHH--HTSSCSCSCCCC
T ss_pred             CCCcCCCcCccCCCCCcccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            5789999999999999999999999999999  999888 88876

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=1.2e-08  Score=65.34  Aligned_cols=44  Identities=25%  Similarity=0.419  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI--HTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTT--TTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            346789999999999999999999999999999  999888 88876

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=1.3e-08  Score=65.26  Aligned_cols=44  Identities=20%  Similarity=0.402  Sum_probs=40.3

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ...++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGG--GSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            346789999999999999999999999999999  999888 88876

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=1.2e-08  Score=65.41  Aligned_cols=44  Identities=30%  Similarity=0.490  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTT--TSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            346789999999999999999999999999999  999888 98877

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=1.2e-08  Score=65.36  Aligned_cols=44  Identities=23%  Similarity=0.356  Sum_probs=40.5

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +..++|++++||.|+.|++.|.....|..|+++  |+++++ .|..|
T Consensus         2 s~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ep0_A            2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSTTCCSEECSSSCCEESSHHHHHHHHTT--TSSSCCCSCCCC
T ss_pred             CCCCCCCCCCCeeCcccCcccCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            347889999999999999999999999999999  999888 98876

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=1.2e-08  Score=65.58  Aligned_cols=44  Identities=20%  Similarity=0.386  Sum_probs=40.3

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHh-hhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~h~~~~~-~C~~C   49 (353)
                      +..+.|++++||.|+.|++.|...+.|..|++ +  |+++++ .|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~--H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYY--HTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTT--TTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhh--cCCCCCCCCCCC
Confidence            34688999999999999999999999999999 9  999888 98876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=5e-09  Score=67.26  Aligned_cols=44  Identities=18%  Similarity=0.290  Sum_probs=40.9

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      +.+++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         2 ~~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytt_A            2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT--HTREKPSGPSSG   46 (46)
T ss_dssp             CCSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTH--HHHCCCCSCCCC
T ss_pred             CCCCCCCCCCCeeCCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            568899999999999999999999999999999  888888 88876

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.71  E-value=4.5e-09  Score=74.54  Aligned_cols=47  Identities=17%  Similarity=0.259  Sum_probs=40.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccCCcchhhhhhhcccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.|...+.....+..+.
T Consensus        16 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~   62 (72)
T 1x6e_A           16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ   62 (72)
T ss_dssp             ECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHH
T ss_pred             cCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHH
Confidence            58889999999999999999999999999999998877666665543

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.71  E-value=1.1e-08  Score=65.22  Aligned_cols=43  Identities=21%  Similarity=0.285  Sum_probs=39.7

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQ   50 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~   50 (353)
                      ...|++++||.|+.|++.|...+.|..|+++  |+++++ .|..||
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~~~C~~cg   45 (45)
T 2epq_A            2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRS--HDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCCSSCCSSEETTTTEECSCHHHHHHHHHH--HSCCCCCCCCCCC
T ss_pred             CCCcCCCCCCcCCCCCcccCCHHHHHHHHHH--ccCCCCCCCcCCC
Confidence            3579999999999999999999999999999  999888 999886

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.70  E-value=9.9e-09  Score=68.92  Aligned_cols=56  Identities=25%  Similarity=0.486  Sum_probs=41.4

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCCCCCccccCcccCCChHHHHhccCCCCCCCCCCccccccccccccccccCchh
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSS   93 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~   93 (353)
                      ||.|+.|++.|.....|..|+++  |.++++                      +            .|+.|+++|...+.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~--h~~~~~----------------------~------------~C~~C~~~f~~~~~   44 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRT--HTDVRP----------------------Y------------HCTYCNFSFKTKGN   44 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH--TSSCCC----------------------E------------ECSSSSCEESSHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHh--cCCCCC----------------------c------------cCCCCCchhcCHHH
Confidence            68999999999999999999998  777654                      1            24556666666666


Q ss_pred             HHHHHHHhcCCC
Q 018586           94 LIKHKEACSLSA  105 (353)
Q Consensus        94 L~~H~~~h~~~k  105 (353)
                      |..|+++|++++
T Consensus        45 l~~H~~~h~~~k   56 (57)
T 1bbo_A           45 LTKHMKSKAHSK   56 (57)
T ss_dssp             HHHHHHSSSSCC
T ss_pred             HHHHHHHhcccC
Confidence            666666666554

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.4e-08  Score=65.04  Aligned_cols=45  Identities=24%  Similarity=0.442  Sum_probs=40.6

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ++..+.|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~~   46 (46)
T 2em2_A            1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCSEECSSSCCEESSHHHHHHHHHH--HCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCCEECCcCCchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            3567899999999999999999999999999999  998888 88764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.70  E-value=4.6e-09  Score=79.23  Aligned_cols=53  Identities=21%  Similarity=0.357  Sum_probs=49.2

Q ss_pred             CCCCCCceeeccccccc-cChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhc-c
Q 018586            8 PKRSTARHKCVACYKQF-KRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH-L   63 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f-~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H-~   63 (353)
                      .|.+++||.|+.|++.| .....|..|+++  | ++++ .|..|++.|..++.|..| +
T Consensus        28 ~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~--h-~~k~~~C~~Cgk~F~~~~~L~~H~~   83 (96)
T 2ctd_A           28 EIVDKGSVSCPTCQAVGRKTIEGLKKHMEN--C-KQEMFTCHHCGKQLRSLAGMKYHVM   83 (96)
T ss_dssp             HHHHTSCEECTTTCSCEESSHHHHHHHHHH--H-CCCCCCCSSSCCCCSSHHHHHHHHH
T ss_pred             HhcCCCCcCCCCCCCCcccCHHHHHHHHHH--H-CCCCeECCCCCCeeCCHHHHHHHhH
Confidence            35568899999999999 999999999999  8 8888 999999999999999999 5

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.6e-08  Score=64.72  Aligned_cols=43  Identities=21%  Similarity=0.312  Sum_probs=39.9

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGG--GCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            46789999999999999999999999999999  999888 98877

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.68  E-value=3.1e-09  Score=76.40  Aligned_cols=47  Identities=11%  Similarity=0.181  Sum_probs=39.3

Q ss_pred             ccccccccccCchhHHHHHH-HhcCC-CCCCcccCCcchhhhhhhcccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKE-ACSLS-APVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~-~h~~~-k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                      .|+.|++.|...+.|..|++ .|.++ ++|+|+.|...+.....+..+.
T Consensus        17 ~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~   65 (77)
T 2ct1_A           17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL   65 (77)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHH
T ss_pred             ECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHH
Confidence            58889999999999999997 67764 8999999998877776666554

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.68  E-value=2.3e-08  Score=64.79  Aligned_cols=44  Identities=25%  Similarity=0.338  Sum_probs=40.3

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK   51 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~   51 (353)
                      ...|++++||.|+.|++.|.....|.+|+++  |+++++ .|..|++
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C~k   48 (48)
T 2epr_A            4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLS--HSGEKPYSSGPSSG   48 (48)
T ss_dssp             CSCCCCCCSEEETTTTEEESSHHHHHHHGGG--SCSCCCCCSCCCCC
T ss_pred             CCCCCCCcCeeCCCCCcccCCHHHHHHHHHh--cCCCCCccCCCCCC
Confidence            4568899999999999999999999999999  999988 9999975

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.9e-08  Score=63.76  Aligned_cols=43  Identities=28%  Similarity=0.438  Sum_probs=39.2

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      |+..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|+
T Consensus         1 n~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2eoj_A            1 GSSGSSGTGENPYECCECGKVFSRKDQLVSHQKT--HSGQSGPSSG   44 (44)
T ss_dssp             CCSCCSSSSCCSCEETTTTEECSSHHHHHHHHTT--SSSSCSCCCC
T ss_pred             CCCccccCCCcCeeCCCCCCccCCHHHHHHHHHH--cCCCCCCCCC
Confidence            5678899999999999999999999999999999  998887 763

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=2.7e-08  Score=63.74  Aligned_cols=43  Identities=26%  Similarity=0.418  Sum_probs=39.2

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRS--HTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHH--HSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHh--cCCCCCCCCCC
Confidence            567899999999999999999999999999999  999888 8753

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=3e-08  Score=63.49  Aligned_cols=43  Identities=28%  Similarity=0.465  Sum_probs=39.2

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTT--TSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            567899999999999999999999999999999  999888 8753

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=3.3e-08  Score=63.29  Aligned_cols=44  Identities=23%  Similarity=0.352  Sum_probs=39.5

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ++..+.|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2emi_A            1 GSSGSSGTGERHYECSECGKAFIQKSTLSMHQRI--HRGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCSSCCCEECSSSCCEESSHHHHHHHHGG--GCSCCCCSCCC
T ss_pred             CCCCcccCCCCCCCCCCCCcccCCHHHHHHHHhH--hCCCCCCCCCC
Confidence            3567899999999999999999999999999999  998888 7753

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=3.5e-08  Score=63.22  Aligned_cols=42  Identities=21%  Similarity=0.413  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      +..++|++++||.|+.|++.|.....|.+|+++  |+++++ .|.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRV--HSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGG--SCCSCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            557889999999999999999999999999999  999888 775

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.9e-08  Score=63.55  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ++..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..
T Consensus         1 ~~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2en9_A            1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHH--HTSSCCCSCCC
T ss_pred             CCCCCCCCCCCCEECCccCcccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            3567899999999999999999999999999999  998888 8753

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=4.7e-08  Score=62.49  Aligned_cols=43  Identities=26%  Similarity=0.394  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ...++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGG--TSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHh--cCCCCCcCCCC
Confidence            456889999999999999999999999999999  999888 8764

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=5.1e-08  Score=62.32  Aligned_cols=43  Identities=23%  Similarity=0.437  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ...++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHT--SCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            457889999999999999999999999999999  999888 8763

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.9e-08  Score=62.93  Aligned_cols=44  Identities=23%  Similarity=0.363  Sum_probs=39.5

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ++..++|++++||.|+.|++.|.....|..|+++  |+++++ .|..
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eq1_A            1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTT--TCCSCCSSCCC
T ss_pred             CCcccccCCCCCeECCcCChhhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            3557899999999999999999999999999999  999888 8753

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=4.4e-08  Score=62.67  Aligned_cols=43  Identities=28%  Similarity=0.414  Sum_probs=39.1

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      +..++|++++||.|+.|++.|.....|..|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKI--HTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTT--TSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            457899999999999999999999999999999  999888 8753

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=4e-08  Score=62.92  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=39.4

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ++..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yto_A            1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS--HTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCEECSSSCCEESSHHHHHHHHHH--HTCCCBTTTBC
T ss_pred             CCcccccCCCCCEECcccCCccCCHhHHHHHHHH--cCCCCCCCCCC
Confidence            3567889999999999999999999999999999  998888 8753

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=4.6e-08  Score=62.59  Aligned_cols=43  Identities=26%  Similarity=0.437  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ...+.|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTT--TTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHh--hCCCCCCCCCC
Confidence            457889999999999999999999999999999  999888 8764

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.59  E-value=4.5e-08  Score=62.66  Aligned_cols=43  Identities=21%  Similarity=0.397  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      +..+.|++++||.|+.|++.|.....|.+|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHH--HTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            457889999999999999999999999999999  998888 8763

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3.6e-08  Score=63.08  Aligned_cols=44  Identities=18%  Similarity=0.360  Sum_probs=39.4

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ++..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eq2_A            1 GSSGSSGTGGKPYQCNECGKAFSQTSKLARHQRV--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGG--GCCCCCCCCCC
T ss_pred             CCcccccCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            3457899999999999999999999999999999  998888 8753

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=4.3e-08  Score=68.12  Aligned_cols=60  Identities=20%  Similarity=0.278  Sum_probs=44.7

Q ss_pred             CCCCCceeeccccccccChHHHHHHHhhhcCCCCCCccccCcccCCChHHHHhccCCCCCCCCCCccccccccc-ccccc
Q 018586            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCN-LCMNI   87 (353)
Q Consensus         9 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C~-~C~k~   87 (353)
                      ..+++||.|+.|++.|. .+.|..|+++   +++++                      +            .|+ .|+++
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~---~~~~p----------------------~------------~C~~~C~k~   46 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ---CPRLP----------------------V------------ACPNQCGVG   46 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH---CSSSE----------------------E------------ECTTCCSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH---cCCcC----------------------c------------cCCcccCcc
Confidence            46789999999999999 9999999875   23222                      1            366 67777


Q ss_pred             ccCchhHHHHHHHhcCCCC
Q 018586           88 FDSPSSLIKHKEACSLSAP  106 (353)
Q Consensus        88 F~~~s~L~~H~~~h~~~k~  106 (353)
                      |...+.|..|+++|...+|
T Consensus        47 f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           47 TVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             EEETTTHHHHHHTTSSSCC
T ss_pred             cccHHHHHHHHHhhcccCc
Confidence            7777888888887765544

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=5.6e-08  Score=62.13  Aligned_cols=43  Identities=23%  Similarity=0.422  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTT--TSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            457899999999999999999999999999999  998888 8753

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=4.2e-08  Score=62.87  Aligned_cols=43  Identities=26%  Similarity=0.461  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      +.+++|++++||.|+.|++.|.....|.+|+++  |+++++ .|..
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV--HSGERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTT--TTSCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHh--cCCCCCCCCCC
Confidence            457899999999999999999999999999999  999888 8753

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=6.4e-08  Score=61.33  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=37.8

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cc
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C   46 (353)
                      ++..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~~   43 (44)
T 2epv_A            1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERT--HAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCSEECSSSCCEESSHHHHHHHHGG--GSSCSCCCC
T ss_pred             CCCCcccCCCcCeECCCCCcccCchHHHHHHHhH--hcCCCCCCC
Confidence            3567899999999999999999999999999999  988877 54

>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*

Probab=98.57  E-value=2e-08  Score=101.93  Aligned_cols=135  Identities=19%  Similarity=0.229  Sum_probs=93.2

Q ss_pred             eeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcCC
Q 018586          137 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE  216 (353)
Q Consensus       137 ~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~~~~  216 (353)
                      ++++|+||||+++... .+ ..+.+.+..+...+  .+.|                .      .+.++++.|.+|+.   
T Consensus         1 ~vv~D~ETtGl~~~~d-~i-~~iqi~~~~~~~~~--~~~p----------------~------~i~~~l~~L~~~l~---   51 (698)
T 1x9m_A            1 MIVSDIEANALLESVT-KF-HCGVIYDYSTAEYV--SYRP----------------S------DFGAYLDALEAEVA---   51 (698)
T ss_dssp             CEEEEEEESSCGGGCC-CE-EEEEEEETTTTEEE--EECG----------------G------GHHHHHHHHHHHHH---
T ss_pred             CEEEEcCCCCcCCCCC-EE-EEEEEEecCCCcEE--EECh----------------H------HHHHHHHHHHHHHh---
Confidence            5799999999864322 23 45666554332221  1111                1      23456788888882   


Q ss_pred             CCcccccCCCCCcEEEeccc-HHHHHHhc----------CcCCCCceeecccccCCcccCCCCCcHHHHHHHHh------
Q 018586          217 STGRLMLDDGKARLLVGHGL-EHDLDSLR----------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYL------  279 (353)
Q Consensus       217 ~~~~~~~~~~~~~~lvgh~~-~~D~~~l~----------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~------  279 (353)
                                .+.++|+||+ .||+.+|.          +..+...++||+..+..+.|...+++|+.|++.||      
T Consensus        52 ----------~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~  121 (698)
T 1x9m_A           52 ----------RGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEA  121 (698)
T ss_dssp             ----------TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCH
T ss_pred             ----------cCCeEEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhh
Confidence                      3568999999 99999995          22331468999999999988777888888888876      


Q ss_pred             -CCcC-----C-----------CC----------------CCChHHHHHHHHHHHHHHHhchhh
Q 018586          280 -GYDI-----Q-----------SG----------------VHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       280 -~~~~-----~-----------~~----------------~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                       |..+     .           .+                .|.|..||.+|++||..+..++.+
T Consensus       122 ~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~  185 (698)
T 1x9m_A          122 WGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHY  185 (698)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTT
T ss_pred             hcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             3211     0           00                356889999999999999987654

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=6.3e-08  Score=61.62  Aligned_cols=42  Identities=21%  Similarity=0.467  Sum_probs=38.2

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      +..++|++++||.|+.|++.|.....|..|+++  |+++++ .|.
T Consensus         2 s~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~   44 (45)
T 2epu_A            2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI--HTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCCSCCSEEETTTTEEESSHHHHHHHHTT--TSSCCCCCSC
T ss_pred             CCCCCCCCCcCccCCCCCCccCChHHHHHHHHH--hCCCCCCCCC
Confidence            456789999999999999999999999999999  999888 775

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=5.5e-08  Score=62.17  Aligned_cols=43  Identities=23%  Similarity=0.344  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ...++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT--HSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHH--HCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHH--cCCCCCCCCCC
Confidence            446789999999999999999999999999999  998888 8753

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=5e-08  Score=62.42  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ...++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTT--TSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHh--cCCCCCCCCCC
Confidence            456889999999999999999999999999999  999888 8753

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=6.3e-08  Score=61.97  Aligned_cols=42  Identities=19%  Similarity=0.362  Sum_probs=38.3

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      +..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRV--HTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHH--CSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            356889999999999999999999999999999  999888 775

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=4.9e-08  Score=62.53  Aligned_cols=42  Identities=24%  Similarity=0.485  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      +..+.|++++||.|+.|++.|.....|..|+++  |+++++ .|.
T Consensus         2 ~~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2eom_A            2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI--HTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHH--HSSCCCSSCC
T ss_pred             CCCCCCCCCCCcCCCCCCCeeCChHHHHHHHHH--hCCCCCCCCC
Confidence            457889999999999999999999999999999  998888 875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.56  E-value=1.9e-08  Score=69.77  Aligned_cols=55  Identities=16%  Similarity=0.411  Sum_probs=47.0

Q ss_pred             CCCCCC-ccccCcccCCChHHHHhcc-C----CCCCCCCCCccccccccccccccccCchhHHHHHHHhcC
Q 018586           39 HSVHQP-KCAVCQKLSKSFESLREHL-T----GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        39 h~~~~~-~C~~C~~~f~~~~~l~~H~-~----~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~  103 (353)
                      |+++++ .|..|++.|.....|..|+ .    ++.++          .|+.|+++|...+.|..|+++|++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~----------~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVY----------PCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCE----------ECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCe----------ECCCCCCccCCHHHHHHHHHHHcC
Confidence            788888 9999999999999999997 1    23333          689999999999999999999875

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=6.1e-08  Score=62.02  Aligned_cols=42  Identities=19%  Similarity=0.332  Sum_probs=38.4

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV--HTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHH--HSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            457889999999999999999999999999999  888888 775

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=6.1e-08  Score=60.57  Aligned_cols=39  Identities=21%  Similarity=0.477  Sum_probs=36.1

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C   46 (353)
                      .++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   41 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKM--HTVKSGPSS   41 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHH--TSCCSSCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHH--hCCCCCCCC
Confidence            4689999999999999999999999999999  998887 66

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=5.3e-08  Score=61.53  Aligned_cols=42  Identities=21%  Similarity=0.316  Sum_probs=38.0

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      ...++|++++||.|+.|++.|...+.|..|+++  |+++++ .|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT--HTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTT--TCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhh--cCCCCCCCCC
Confidence            456889999999999999999999999999999  998887 763

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=4.3e-08  Score=62.69  Aligned_cols=44  Identities=23%  Similarity=0.371  Sum_probs=39.3

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ++..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~kp~~C~~   45 (46)
T 2eor_A            1 GSSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSSSCCCSEECTTTCCEESSHHHHHHHHHH--HHSCCCSSSTT
T ss_pred             CCCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHh--cCCCCCCCCCC
Confidence            3457899999999999999999999999999999  888888 8753

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=4.8e-08  Score=61.64  Aligned_cols=40  Identities=13%  Similarity=0.200  Sum_probs=37.0

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      .++|++++||.|+.|++.|...+.|..|+++  |+++++ .|.
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   42 (43)
T 2yrm_A            2 SSGSSGNGAFFCNECDCRFSEEASLKRHTLQ--THSDKSGPSS   42 (43)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHHHH--HTCTTCSSSC
T ss_pred             CcCcCCCCCEECCCCCCeeCChHHHHHHHHh--hCCCCCccCC
Confidence            4689999999999999999999999999999  998888 875

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.55  E-value=6.1e-08  Score=60.63  Aligned_cols=40  Identities=28%  Similarity=0.467  Sum_probs=36.5

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      .++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|.
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   42 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRT--HAGESGPSSG   42 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGG--GCCCCSCCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHh--cCCCCCCCCC
Confidence            4689999999999999999999999999999  998887 763

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.55  E-value=4.2e-08  Score=65.78  Aligned_cols=47  Identities=17%  Similarity=0.181  Sum_probs=41.0

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccCCcchhhhhhhcccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.|+..+.....+..+.
T Consensus         3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   49 (57)
T 1bbo_A            3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM   49 (57)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHH
T ss_pred             cCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHH
Confidence            58999999999999999999999999999999998877666665543

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=6.7e-08  Score=61.81  Aligned_cols=43  Identities=21%  Similarity=0.451  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ...++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGG--GTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHh--cCCCCCCCCCC
Confidence            446789999999999999999999999999999  998888 8753

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=98.54  E-value=3.4e-09  Score=78.27  Aligned_cols=73  Identities=18%  Similarity=0.440  Sum_probs=59.9

Q ss_pred             CC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHHHhcCCCCCCcccCCcchhh
Q 018586           43 QP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAES  118 (353)
Q Consensus        43 ~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~  118 (353)
                      ++ .|..|++.|.....|..|+   .++.+.          .|+.|+++|...+.|..|+++|++ .++.|+.|...+..
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~----------~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~   70 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPF----------ACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSK   70 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCE----------ECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCc----------cCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHH
Confidence            46 8999999999999999998   344333          588899999999999999999984 88999999877766


Q ss_pred             hhhhcccc
Q 018586          119 QKKISGAI  126 (353)
Q Consensus       119 ~~~~~~~~  126 (353)
                      ...+..++
T Consensus        71 ~~~L~~H~   78 (88)
T 1llm_C           71 NYHLENEV   78 (88)
T ss_dssp             HHHHHHHH
T ss_pred             HhhhHHHH
Confidence            66655544

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=98.54  E-value=3.6e-08  Score=72.49  Aligned_cols=71  Identities=21%  Similarity=0.315  Sum_probs=58.3

Q ss_pred             cccc--CcccCCChHHHHhcc---CCCCCCCCCCccccccccc--cccccccCchhHHHHHHHhcCCCCCCcccCCcchh
Q 018586           45 KCAV--CQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCN--LCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAE  117 (353)
Q Consensus        45 ~C~~--C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~--~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~  117 (353)
                      .|..  |++.|.....|..|+   .++.+.          .|+  .|++.|...+.|..|+++|++++||.|+.|+..+.
T Consensus         7 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   76 (89)
T 2wbs_A            7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPY----------HCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS   76 (89)
T ss_dssp             ECCSTTTCCEESSHHHHHHHHTTSCSSCCE----------ECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred             eCCCCCCCCcCCCHHHHHHHHHhcCCCCCc----------CCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccC
Confidence            8888  999999999999998   222222          465  69999999999999999999999999999987766


Q ss_pred             hhhhhccc
Q 018586          118 SQKKISGA  125 (353)
Q Consensus       118 ~~~~~~~~  125 (353)
                      ....+..+
T Consensus        77 ~~~~l~~H   84 (89)
T 2wbs_A           77 RSDHLALH   84 (89)
T ss_dssp             SHHHHHHH
T ss_pred             CHHHHHHH
Confidence            66555443

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=7.5e-08  Score=59.88  Aligned_cols=39  Identities=26%  Similarity=0.415  Sum_probs=35.7

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C   46 (353)
                      .++|++++||.|+.|++.|...+.|..|+++  |+++++ .|
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C   41 (41)
T 2ept_A            2 SSGSSGQRVYECQECGKSFRQKGSLTLHERI--HTGSGPSSG   41 (41)
T ss_dssp             CSSCCCCCCEECSSSCCEESSHHHHHHHGGG--CCCCSCSCC
T ss_pred             CCccCCCCCeECCCCCCCcCCHHHHHHHHHH--hCCCCCcCC
Confidence            4679999999999999999999999999999  998887 65

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=8.8e-08  Score=61.73  Aligned_cols=43  Identities=23%  Similarity=0.343  Sum_probs=39.6

Q ss_pred             CCCCCCCCCceeec--cccccccChHHHHHHHhhhcCCCCCC-ccccC
Q 018586            5 AELPKRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (353)
Q Consensus         5 ~~~~h~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C   49 (353)
                      ..++|++++||.|.  .|++.|.....|..|+++  |+++++ .|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS--HSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTT--SCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            45789999999998  899999999999999999  999988 99876

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=3.9e-08  Score=70.61  Aligned_cols=47  Identities=17%  Similarity=0.197  Sum_probs=40.9

Q ss_pred             ccccccccccCchhHHHHHHHhcC---CCCCCcccCCcchhhhhhhcccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSL---SAPVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~---~k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                      .|+.|++.|...+.|..|+++|++   +++|.|+.|+..+.....+..+.
T Consensus         9 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~   58 (78)
T 2d9h_A            9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR   58 (78)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHH
T ss_pred             ECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHH
Confidence            588999999999999999999996   89999999998877776666554

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=7.7e-08  Score=61.53  Aligned_cols=42  Identities=21%  Similarity=0.364  Sum_probs=38.2

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCC-CCC-ccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSV-HQP-KCA   47 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~-~~~-~C~   47 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |++ +++ .|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERI--HTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTT--CCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            456889999999999999999999999999999  998 887 775

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.53  E-value=9.9e-08  Score=67.33  Aligned_cols=57  Identities=23%  Similarity=0.519  Sum_probs=49.1

Q ss_pred             CCCCCCCCCceeecc--ccccccChHHHHHHHhhhcCCCCCC-ccc--cCcccCCChHHHHhcc
Q 018586            5 AELPKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL   63 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~h~~~~~-~C~--~C~~~f~~~~~l~~H~   63 (353)
                      ....++..++|.|+.  |++.|.....|..|+++  |.++++ .|.  .|++.|.....|..|+
T Consensus         8 ~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~~~C~k~f~~~~~l~~H~   69 (72)
T 2epa_A            8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT--HTGEKPFSCSWKGCERRFARSDELSRHR   69 (72)
T ss_dssp             CCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHH--HSSSCSEECCCTTCCCEESSHHHHHHHT
T ss_pred             CCCCccccCceeCCCCCCccccCCHHHHHHHHHh--cCCCCCccCCCCCCCcccCCHHHHHhHh
Confidence            356677889999998  99999999999999999  888888 885  4888888888888875

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=7.1e-08  Score=61.66  Aligned_cols=43  Identities=26%  Similarity=0.448  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      +..++|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHH--HCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            346789999999999999999999999999999  888888 8753

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=8.8e-08  Score=60.58  Aligned_cols=40  Identities=18%  Similarity=0.416  Sum_probs=36.8

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cc
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C   46 (353)
                      ..++|++++||.|+.|++.|.....|..|+++  |+++++ .|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERT--HARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHH--CCCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHh--cCCCCCCCC
Confidence            46789999999999999999999999999999  998887 76

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.53  E-value=9e-08  Score=59.78  Aligned_cols=40  Identities=20%  Similarity=0.279  Sum_probs=36.5

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cc
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C   46 (353)
                      .+++|++++||.|+.|++.|...+.|..|+++  |+++++ .|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS--CSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHH--TTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhh--cCCCCCCCC
Confidence            35789999999999999999999999999999  998887 65

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=1e-07  Score=60.21  Aligned_cols=41  Identities=20%  Similarity=0.371  Sum_probs=37.3

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      ..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT--HTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHH--TTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHH--hCCCCCCCCC
Confidence            46789999999999999999999999999999  998887 763

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.52  E-value=1.4e-08  Score=69.89  Aligned_cols=51  Identities=20%  Similarity=0.337  Sum_probs=43.9

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHH
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLR   60 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~   60 (353)
                      .++.|++++||.|+.|++.|...+.|.   ++  |+++++ .|..|++.|....++.
T Consensus         5 h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~--H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            5 DERDSTNRASFKCPVCSSTFTDLEANQ---LF--DPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CSSSCCSSSEEECSSSCCEEEHHHHHH---HE--ETTTTEEBCSSSCCBCEECTTCS
T ss_pred             HHHHcCCCCCccCCCCCchhccHHHhH---hh--cCCCCCEECCCCCCccccCcccc
Confidence            467899999999999999999988776   67  899888 9999999987766544

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.52  E-value=4.8e-08  Score=65.48  Aligned_cols=50  Identities=30%  Similarity=0.441  Sum_probs=35.2

Q ss_pred             CC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHHHhc
Q 018586           43 QP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        43 ~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      ++ .|..|++.|.....|..|+   .++.+.          .|+.|+++|...+.|..|+++|+
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPY----------KCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHCCCCE----------ECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCCCCCc----------CCCCCcchhCCHHHHHHHHHHhc
Confidence            44 7888888888888888887   333333          46777788888888888888775

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=9.7e-08  Score=61.05  Aligned_cols=42  Identities=24%  Similarity=0.423  Sum_probs=38.2

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ..+.|++++||.|+.|++.|...+.|.+|+++  |+++++ .|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV--HTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTT--TSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            46789999999999999999999999999999  999888 8753

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=9.3e-08  Score=60.46  Aligned_cols=42  Identities=24%  Similarity=0.490  Sum_probs=38.0

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKT--HAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGG--GCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHH--cCCCCCcCCC
Confidence            456889999999999999999999999999999  998887 763

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.51  E-value=4.4e-08  Score=71.94  Aligned_cols=57  Identities=21%  Similarity=0.323  Sum_probs=42.1

Q ss_pred             CCCCCC-ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHH-HhcCCC
Q 018586           39 HSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKE-ACSLSA  105 (353)
Q Consensus        39 h~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~-~h~~~k  105 (353)
                      ++..++ .|..|++.|..+..|..|+   .++.++          .|+.|+++|...+.|.+|++ +|++|.
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~----------~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVF----------PCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSE----------ECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCcc----------CCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            555566 8888888888888888887   344444          57888888888888888864 576553

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=4.2e-08  Score=62.81  Aligned_cols=43  Identities=26%  Similarity=0.460  Sum_probs=38.9

Q ss_pred             CCCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            3 TEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         3 ~~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      ++..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|.
T Consensus         1 ~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2emz_A            1 GSSGSSGSGERPFKCNECGKGFGRRSHLAGHLRL--HSREKSSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHH--HHHTTCCCSC
T ss_pred             CCCCcCCCCCCCeECCCCCcccCCHHHHHHHHHH--hCCCCCCCCC
Confidence            3567899999999999999999999999999999  888887 775

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=5.4e-08  Score=60.86  Aligned_cols=40  Identities=25%  Similarity=0.383  Sum_probs=36.3

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cc
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C   46 (353)
                      .+++|++++||.|+.|++.|...+.|..|+++  |+++++ .|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI--HTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHH--HHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHH--cCCCCCCCC
Confidence            46789999999999999999999999999999  888877 65

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=1e-07  Score=60.90  Aligned_cols=43  Identities=23%  Similarity=0.385  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI--HTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGG--GSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            346789999999999999999999999999999  999888 8763

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=1.2e-07  Score=60.56  Aligned_cols=42  Identities=21%  Similarity=0.356  Sum_probs=38.2

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cccc
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~   48 (353)
                      ..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI--HTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTT--SCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            46789999999999999999999999999999  999888 7753

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=7.6e-08  Score=60.21  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=35.9

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C   46 (353)
                      +++|++++||.|+.|++.|...+.|..|+++  |+++++ .|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   42 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRI--HTGSGPSSG   42 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHTTT--TSCCSSTTC
T ss_pred             CcccCCCCCEECCCCCCccCCHHHHHHHHHh--cCCCCCCCC
Confidence            5789999999999999999999999999999  998877 65

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.48  E-value=3.9e-08  Score=77.95  Aligned_cols=52  Identities=23%  Similarity=0.503  Sum_probs=48.5

Q ss_pred             CCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc
Q 018586            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~   63 (353)
                      .|++++||.|+.|++.|.....|..|+++  |  +++ .|..|++.|...+.|..|+
T Consensus        68 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~--H--~~~~~C~~C~k~f~~~~~l~~H~  120 (129)
T 2wbt_A           68 ASKAISQFVCPLCLMPFSSSVSLKQHIRY--T--EHTKVCPVCKKEFTSTDSALDHV  120 (129)
T ss_dssp             HHHHHCSEECTTTCCEESSHHHHHHHHHH--T--CCCCBCTTTCCBCSSHHHHHHHH
T ss_pred             HhCCCCCeECCCCCcccCCHhHHHHHHHH--C--CCCCCCCCCCcccCCHHHHHHHH
Confidence            36788999999999999999999999999  8  566 9999999999999999998

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=7.9e-08  Score=60.03  Aligned_cols=40  Identities=25%  Similarity=0.464  Sum_probs=36.4

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cc
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C   46 (353)
                      ..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV--HTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGG--TSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHH--hCCCCCCCC
Confidence            35789999999999999999999999999999  998887 65

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=1.1e-07  Score=57.62  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=33.1

Q ss_pred             CCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC
Q 018586            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (353)
Q Consensus         7 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~   44 (353)
                      ++|++++||.|+.|++.|...+.|..|+++  |++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~--h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKT--NHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHH--HCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHH--HcCCCC
Confidence            679999999999999999999999999999  887654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=98.47  E-value=1.2e-07  Score=71.25  Aligned_cols=73  Identities=19%  Similarity=0.294  Sum_probs=58.9

Q ss_pred             CCC-cccc--CcccCCChHHHHhcc---CCCCCCCCCCccccccccc--cccccccCchhHHHHHHHhcCCCCCCcccCC
Q 018586           42 HQP-KCAV--CQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCN--LCMNIFDSPSSLIKHKEACSLSAPVPFEKTL  113 (353)
Q Consensus        42 ~~~-~C~~--C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~--~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~  113 (353)
                      .++ .|..  |++.|.....|..|+   .++.+.          .|+  .|++.|.....|..|+++|++++||.|+.|+
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   82 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPY----------KCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN   82 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCE----------ECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSC
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCe----------eCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCc
Confidence            344 8885  999999999999998   333322          464  6999999999999999999999999999998


Q ss_pred             cchhhhhhhcc
Q 018586          114 SNAESQKKISG  124 (353)
Q Consensus       114 ~~~~~~~~~~~  124 (353)
                      ..+.....+..
T Consensus        83 ~~f~~~~~l~~   93 (100)
T 2ebt_A           83 RSFSRSDHLAL   93 (100)
T ss_dssp             CBCSSHHHHHH
T ss_pred             CccCCHHHHHH
Confidence            77666555544

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=8.4e-08  Score=60.67  Aligned_cols=41  Identities=27%  Similarity=0.403  Sum_probs=37.2

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C   46 (353)
                      +..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI--HTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHH--HCCCCCCSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHH--hCCCCCCCC
Confidence            346789999999999999999999999999999  888877 66

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.2e-07  Score=59.91  Aligned_cols=41  Identities=22%  Similarity=0.406  Sum_probs=37.3

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      ..+.|++++||.|+.|++.|...+.|..|+++  |+++++ .|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQAL--HAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHH--HTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHH--HCCCCCCCCC
Confidence            46789999999999999999999999999999  898887 763

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.43  E-value=1.7e-07  Score=59.89  Aligned_cols=33  Identities=21%  Similarity=0.398  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A           14 ECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             BCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999875

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.41  E-value=2.3e-07  Score=55.22  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=31.9

Q ss_pred             CCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC
Q 018586            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~   44 (353)
                      +|++++||.|+.|++.|...+.|..|+++  |+++++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIRE--VHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHH--TSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHH--HcCCCC
Confidence            47899999999999999999999999999  887654

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=2.1e-07  Score=59.30  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=30.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A           14 NCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             ECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.40  E-value=2.2e-07  Score=55.40  Aligned_cols=35  Identities=20%  Similarity=0.410  Sum_probs=32.0

Q ss_pred             CCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC
Q 018586            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~   44 (353)
                      +|++++||.|+.|++.|...+.|..|+++  |++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKV--HTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGG--GTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHH--cCCCCC
Confidence            58899999999999999999999999999  887654

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.3e-07  Score=60.34  Aligned_cols=41  Identities=17%  Similarity=0.340  Sum_probs=37.2

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      ..++|++++||.|+.|++.|.....|..|+++  |+++++ .|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS--HERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHH--HHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            36789999999999999999999999999999  888887 774

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=2.3e-07  Score=59.24  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A           14 KCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            578899999999999999999999999999865

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.9e-07  Score=59.65  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A           14 ECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=2.6e-07  Score=58.91  Aligned_cols=33  Identities=18%  Similarity=0.155  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A           14 KCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             BCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             cCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999875

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=2.1e-07  Score=59.35  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A           14 KCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             eCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.37  E-value=3e-07  Score=58.69  Aligned_cols=33  Identities=21%  Similarity=0.219  Sum_probs=30.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A           14 KCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             ccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=2.4e-07  Score=59.10  Aligned_cols=33  Identities=21%  Similarity=0.194  Sum_probs=30.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A           14 KCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             eCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999865

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.37  E-value=3.7e-07  Score=63.25  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=36.7

Q ss_pred             CCCCCCCCCCceeecc--ccccccChHHHHHHH-hhhcCCCCCC-cccc
Q 018586            4 EAELPKRSTARHKCVA--CYKQFKRKDHLIEHM-KISYHSVHQP-KCAV   48 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~--C~k~f~~~~~l~~H~-~~~~h~~~~~-~C~~   48 (353)
                      ..-..++++|||+|++  |+++|...++|.+|+ ++  |++++| .|..
T Consensus        17 ~~~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rri--HTgEKP~~~~~   63 (73)
T 1x3c_A           17 EFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAV--HKSDLPAFSAE   63 (73)
T ss_dssp             CCSSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHH--SSSCCCCCCCS
T ss_pred             cccccccCCCCeECCCCCcChhHcCHHHHHHHhhhh--CCCCCCccccc
Confidence            3345678999999976  999999999999997 68  999998 7754

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=2.4e-07  Score=59.11  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=30.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|.+.+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A           14 KCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             ECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2e-07  Score=59.50  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A           14 GCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             EccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2e-07  Score=59.50  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=30.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A           14 KCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             BCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             ECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2.1e-07  Score=59.37  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A           14 ICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999865

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2.4e-07  Score=59.14  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A           14 KCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             eCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2.7e-07  Score=58.90  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A           14 ICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             ECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999864

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=2.5e-07  Score=58.38  Aligned_cols=33  Identities=27%  Similarity=0.491  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        12 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A           12 GCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             cCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2.2e-07  Score=59.34  Aligned_cols=33  Identities=27%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A           14 MCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2.2e-07  Score=59.28  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=30.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A           14 ECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             BCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             eCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2.1e-07  Score=59.30  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=30.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A           14 KCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             EETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             ECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999865

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=2e-07  Score=59.53  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A           14 ECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             eCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            588899999999999999999999999999875

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=2.1e-07  Score=59.41  Aligned_cols=33  Identities=24%  Similarity=0.434  Sum_probs=30.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A           14 KCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             ECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=2.3e-07  Score=59.21  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A           14 ECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.34  E-value=2.2e-07  Score=59.30  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=30.3

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A           14 KCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            478899999999999999999999999999865

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.33  E-value=2.2e-07  Score=59.29  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=30.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A           14 KCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.33  E-value=1.8e-07  Score=59.69  Aligned_cols=33  Identities=27%  Similarity=0.463  Sum_probs=30.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A           14 GCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             ECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=2.6e-07  Score=58.92  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=30.4

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A           14 KCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            478899999999999999999999999999875

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=2.1e-07  Score=59.48  Aligned_cols=33  Identities=21%  Similarity=0.252  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|++.|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A           14 QCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             ECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999876

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=3.8e-07  Score=55.28  Aligned_cols=34  Identities=24%  Similarity=0.212  Sum_probs=31.2

Q ss_pred             CCCCCCCceeeccccccccChHHHHHH-HhhhcCCCC
Q 018586            7 LPKRSTARHKCVACYKQFKRKDHLIEH-MKISYHSVH   42 (353)
Q Consensus         7 ~~h~~~k~~~C~~C~k~f~~~~~l~~H-~~~~~h~~~   42 (353)
                      ++|++++||+|+.|++.|..++.|..| +++  |+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~--H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQK--HSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHH--TCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHH--ccCc
Confidence            679999999999999999999999999 888  8764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=4.8e-07  Score=54.30  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=31.6

Q ss_pred             CCCCCCCceeeccccccccChHHHHHHHhhhcCCCC
Q 018586            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus         7 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      ++|++++||+|+.|++.|...+.|..|+++  |+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   35 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNR--HSTE   35 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHH--SSTT
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHH--hccC
Confidence            578999999999999999999999999999  8765

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.32  E-value=2.9e-07  Score=58.46  Aligned_cols=34  Identities=15%  Similarity=0.128  Sum_probs=31.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTL  113 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~  113 (353)
                      .|+.|+++|...+.|..|+++|+++++|.|+.|+
T Consensus        12 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A           12 SCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             EETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            5899999999999999999999999999999874

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=2.8e-07  Score=58.78  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A           14 DCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             ECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            578899999999999999999999999999865

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=2.2e-07  Score=59.23  Aligned_cols=33  Identities=18%  Similarity=0.086  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A           14 TCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999875

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=4.2e-07  Score=54.57  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=31.5

Q ss_pred             CCCCCCCceeeccccccccChHHHHHHHhhhcCCCC
Q 018586            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus         7 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      ++|++++||.|+.|++.|...+.|..|+++  |+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   35 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLV--HGDK   35 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTT--TSTT
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHH--hcCC
Confidence            478999999999999999999999999999  8765

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=2.2e-07  Score=59.27  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A           14 KCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             ECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            588899999999999999999999999999875

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.32  E-value=4.4e-07  Score=54.79  Aligned_cols=35  Identities=29%  Similarity=0.501  Sum_probs=32.2

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCC
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~   41 (353)
                      ..++|++++||+|+.|++.|...+.|..|+++  |++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR--HML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG--GTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHH--hcc
Confidence            36789999999999999999999999999998  765

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.32  E-value=4.4e-07  Score=55.63  Aligned_cols=34  Identities=21%  Similarity=0.446  Sum_probs=31.3

Q ss_pred             CCCCCceeeccccccccChHHHHHHHhhhcCCCCCC
Q 018586            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (353)
Q Consensus         9 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~   44 (353)
                      |++++||.|+.|++.|...+.|..|+++  |+++++
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~   34 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNV--HRRDRA   34 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHT--TCCSCT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHH--cCCCcc
Confidence            6789999999999999999999999999  998876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=2.5e-07  Score=59.03  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A           14 KCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=3.1e-07  Score=58.60  Aligned_cols=33  Identities=33%  Similarity=0.423  Sum_probs=30.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A           14 GCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             BCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=4.2e-08  Score=69.19  Aligned_cols=58  Identities=19%  Similarity=0.269  Sum_probs=48.2

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc-----CCCCCCCCC
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHC   72 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~c~~C   72 (353)
                      .+.|++++||.|+.|++.|.....|..         +++ .|..|++.|...+.|..|+     .+++.|+.|
T Consensus        10 ~~~h~~~~~~~C~~C~k~f~~~~~l~~---------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           10 QKIHLGDRSQKCSKCGIIFIRRSTLSR---------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCCSEEECSSSCCEEECCCCCCC---------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             HHHhCCCCCeeCCcccchhCCHHHhCc---------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            678999999999999999999886654         345 9999999999999999998     235556554

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=3.1e-07  Score=58.65  Aligned_cols=33  Identities=12%  Similarity=0.093  Sum_probs=30.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A           14 KCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             eCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.29  E-value=2.3e-07  Score=59.20  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=30.4

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A           14 ECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=4.1e-07  Score=55.82  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=30.2

Q ss_pred             CCCCCCceeecc--ccccccChHHHHHHHhhhcCCCC
Q 018586            8 PKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus         8 ~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      ++++++||+|+.  |+++|..++.|.+|+++  |+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~--Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKV--HTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHH--HSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHh--cCCC
Confidence            578999999986  99999999999999999  8875

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.29  E-value=3.2e-07  Score=58.48  Aligned_cols=33  Identities=18%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|++.|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A           14 VCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             ECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999876

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.29  E-value=3.6e-07  Score=61.80  Aligned_cols=50  Identities=30%  Similarity=0.513  Sum_probs=33.3

Q ss_pred             ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHH-HHhcCC
Q 018586           45 KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHK-EACSLS  104 (353)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~-~~h~~~  104 (353)
                      .|..|++.|.....|..|+   .++.+.          .|+.|++.|...+.|..|+ ++|.++
T Consensus         4 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            4 VCEVCTRAFARQEHLKRHYRSHTNEKPY----------PCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCTTTCCCBSCHHHHHHHHHTTTSSCSE----------ECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             cCCCCccccCCHHHHHHHHHHhCCCCCc----------cCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            6777777777777777776   222222          4677777777777777775 456543

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=4e-07  Score=58.04  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A           14 QCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             EccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=3.5e-07  Score=58.38  Aligned_cols=33  Identities=12%  Similarity=0.039  Sum_probs=30.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A           14 KCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             ECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            588999999999999999999999999999876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=3.9e-07  Score=58.11  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=30.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A           14 GCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             EETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             ECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            589999999999999999999999999999865

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.28  E-value=2.9e-07  Score=58.66  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=30.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A           14 NCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             ECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=2e-07  Score=59.53  Aligned_cols=33  Identities=15%  Similarity=0.297  Sum_probs=30.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A           14 KCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999875

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=4e-07  Score=58.14  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=30.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A           14 KCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=3e-07  Score=58.65  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A           14 KCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             EETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             eCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.26  E-value=4.8e-07  Score=57.70  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||+|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A           14 KCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             ECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.26  E-value=6.3e-07  Score=57.12  Aligned_cols=32  Identities=19%  Similarity=0.229  Sum_probs=29.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||+|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A           14 ECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47889999999999999999999999999974

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.26  E-value=3.6e-07  Score=58.29  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=30.1

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A           14 RCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999753

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=4.4e-07  Score=54.86  Aligned_cols=34  Identities=24%  Similarity=0.272  Sum_probs=31.3

Q ss_pred             CCCCCCCceeeccccccccCh-HHHHHHHhhhcCCCC
Q 018586            7 LPKRSTARHKCVACYKQFKRK-DHLIEHMKISYHSVH   42 (353)
Q Consensus         7 ~~h~~~k~~~C~~C~k~f~~~-~~l~~H~~~~~h~~~   42 (353)
                      ++|++++||.|+.|++.|... +.|..|+++  |+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~--H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWA--HEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHH--HHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHh--cCCC
Confidence            579999999999999999999 999999998  7764

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.26  E-value=7.5e-07  Score=55.42  Aligned_cols=31  Identities=16%  Similarity=0.433  Sum_probs=28.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|+++|...+.|..|+++|++++||+|.
T Consensus        12 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A           12 SCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             ECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999984

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=4.7e-07  Score=57.72  Aligned_cols=33  Identities=21%  Similarity=0.240  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A           14 KCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}

Probab=98.25  E-value=6.6e-06  Score=73.78  Aligned_cols=158  Identities=13%  Similarity=0.113  Sum_probs=100.9

Q ss_pred             CCceeeccCccccccCC-----------------------CCccceeEEeeecCCCCe-------EEeeeccCCCCc-cc
Q 018586          134 GPKAVAMDCEMVGGGSN-----------------------GTLDLCARVCLVDEDENV-------IFHTYVQPQLPV-TN  182 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~~-----------------------~~~~il~~v~ivd~~g~~-------~~~~lv~P~~~i-~~  182 (353)
                      ..+||++|+|++|+...                       .++++  .+++.+.+|+.       .|+-.+.+...+ .+
T Consensus        33 ~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQl--GLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~~  110 (285)
T 4gmj_B           33 KYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQL--GLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQ  110 (285)
T ss_dssp             HCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEE--EEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCH
T ss_pred             cCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeE--EEEeeccCCCcCCCeeEEEEEEEeccccccccH
Confidence            34699999999996311                       13333  55666777653       255555555422 22


Q ss_pred             ccccc---CCCCHhh-hcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-----Cc-------
Q 018586          183 YRYEV---TGLTEED-IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-----MN-------  246 (353)
Q Consensus       183 ~~~~~---~GIt~e~-l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-----~~-------  246 (353)
                      ....+   +||.=+. ...+.+..+..+-+....          ..-..+..+|.++..+|+.+|-     -.       
T Consensus       111 ~SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sg----------lvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~e  180 (285)
T 4gmj_B          111 DSIELLTTSGIQFKKHEEEGIETQYFAELLMTSG----------VVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD  180 (285)
T ss_dssp             HHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSS----------SSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHH
T ss_pred             HHHHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhH----------HHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHH
Confidence            22222   6777443 345666554443333211          1122556777777779999876     11       


Q ss_pred             --------CCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhch
Q 018586          247 --------YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       247 --------~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                              +|.  +.|+..+.+....  ...+|+++|+.+ |++--+..|.|-.|+..|+.+|.++++..
T Consensus       181 F~~~l~~~FP~--vYD~K~l~~~~~~--l~ggL~~lA~~L-~v~r~g~~HqAGsDSllT~~~F~kl~~~~  245 (285)
T 4gmj_B          181 FFEILRLFFPV--IYDVKYLMKSCKN--LKGGLQEVAEQL-ELERIGPQHQAGSDSLLTGMAFFKMREMF  245 (285)
T ss_dssp             HHHHHHHHCSC--EEEHHHHGGGSTT--CCSCHHHHHHHT-TCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCch--hhhHHHHHHhccc--cCChHHHHHHhC-CCCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence                    343  7888888766543  245899999998 98844448999999999999999998875

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.25  E-value=5.9e-07  Score=57.23  Aligned_cols=32  Identities=19%  Similarity=0.439  Sum_probs=29.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A           14 ECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=6.1e-07  Score=56.48  Aligned_cols=31  Identities=23%  Similarity=0.423  Sum_probs=29.1

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A           14 ECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             ECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999999999999985

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=6.3e-07  Score=57.06  Aligned_cols=32  Identities=31%  Similarity=0.394  Sum_probs=29.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A           14 KCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             ECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             eccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999973

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=6.9e-07  Score=53.50  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             CCCCCCCceeeccccccccChHHHHHHHhhhcCCCC
Q 018586            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus         7 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      .+|++++||.|+.|++.|.....|..|+++  |+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   35 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRK--HTGE   35 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHH--HTCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHH--ccCC
Confidence            468999999999999999999999999999  7765

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=8.1e-07  Score=56.61  Aligned_cols=32  Identities=28%  Similarity=0.414  Sum_probs=29.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A           14 KCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             ECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999973

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.24  E-value=6.1e-07  Score=57.19  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=29.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A           14 ECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999973

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.24  E-value=4e-07  Score=58.09  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A           14 KCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.23  E-value=5.9e-07  Score=57.27  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=29.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||+|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A           14 SCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             EETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58999999999999999999999999999974

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=3.4e-07  Score=58.39  Aligned_cols=33  Identities=18%  Similarity=0.200  Sum_probs=30.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A           14 KCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             cCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.23  E-value=2.8e-07  Score=61.13  Aligned_cols=29  Identities=21%  Similarity=0.481  Sum_probs=26.2

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~  108 (353)
                      .|+.|++.|...+.|..|+++|++++||.
T Consensus        26 ~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A           26 TCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            57889999999999999999999999874

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.23  E-value=3.2e-07  Score=59.23  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=31.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTL  113 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~  113 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A           14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             EETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             eCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            5899999999999999999999999999999884

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.23  E-value=5.5e-07  Score=57.37  Aligned_cols=32  Identities=25%  Similarity=0.476  Sum_probs=29.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A           14 KCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             BCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             ECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            58889999999999999999999999999973

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.22  E-value=3.7e-07  Score=64.42  Aligned_cols=54  Identities=24%  Similarity=0.528  Sum_probs=39.7

Q ss_pred             CCCCCC-ccc--cCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHHHhc
Q 018586           39 HSVHQP-KCA--VCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        39 h~~~~~-~C~--~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      |+++++ .|.  .|++.|.....|..|+   .++.++          .|+.|+++|...+.|..|+++|+
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~----------~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPF----------QCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCE----------ECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCe----------ECCCCCchhCCHHHHHHHHHhcC
Confidence            667777 886  5888888888888887   333333          47778888888888888887764

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.22  E-value=4.8e-07  Score=57.68  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=29.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A           14 ECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             ECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.22  E-value=6.4e-07  Score=56.99  Aligned_cols=31  Identities=23%  Similarity=0.260  Sum_probs=29.1

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A           14 ECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             CCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5788999999999999999999999999997

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.22  E-value=5.5e-07  Score=56.66  Aligned_cols=31  Identities=29%  Similarity=0.316  Sum_probs=28.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|++.|...+.|..|+++|++++||+|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A           14 VCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             ECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            4788999999999999999999999999985

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.21  E-value=6.4e-07  Score=57.11  Aligned_cols=32  Identities=22%  Similarity=0.396  Sum_probs=29.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A           14 KCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             BCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999973

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.21  E-value=6.6e-07  Score=57.19  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=30.5

Q ss_pred             ccccccccccCchhHHHHHH-HhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKE-ACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~-~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|++ +|++++||.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A           14 ECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            57889999999999999999 9999999999865

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=8.6e-07  Score=55.84  Aligned_cols=31  Identities=16%  Similarity=0.382  Sum_probs=29.0

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|+++|...+.|..|+++|++++||+|.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A           14 KCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             ECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             ECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            5889999999999999999999999999984

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.21  E-value=3.9e-07  Score=58.09  Aligned_cols=33  Identities=18%  Similarity=0.243  Sum_probs=30.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A           14 KCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             EETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             ECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            589999999999999999999999999999875

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.21  E-value=6.5e-07  Score=57.02  Aligned_cols=32  Identities=25%  Similarity=0.435  Sum_probs=29.4

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A           14 KCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             ECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            58889999999999999999999999999973

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.20  E-value=7.1e-07  Score=56.85  Aligned_cols=31  Identities=23%  Similarity=0.390  Sum_probs=29.2

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|++.|...+.|..|+++|++++||+|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A           14 ICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             BCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             ECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999997

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.20  E-value=3.7e-07  Score=58.26  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=30.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A           14 QCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             eCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            488899999999999999999999999999865

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.20  E-value=6e-07  Score=57.19  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=29.4

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A           14 QCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47889999999999999999999999999973

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.20  E-value=3.9e-07  Score=66.03  Aligned_cols=66  Identities=26%  Similarity=0.359  Sum_probs=52.6

Q ss_pred             cc--ccCcccCCChHHHHhcc---CCCCCCCCCCcccccccccc--ccccccCchhHHHHHHHhcCCCCCCccc---CCc
Q 018586           45 KC--AVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNL--CMNIFDSPSSLIKHKEACSLSAPVPFEK---TLS  114 (353)
Q Consensus        45 ~C--~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~--C~k~F~~~s~L~~H~~~h~~~k~~~c~~---~~~  114 (353)
                      .|  ..|++.|.....|..|+   .++.+.          .|+.  |+++|...+.|..|+++|++   |+|+.   |+.
T Consensus         3 ~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~----------~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~   69 (85)
T 2j7j_A            3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPY----------ECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSF   69 (85)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHHHHHTTCCE----------ECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCC
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHhCCCCCe----------eCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCC
Confidence            68  88999999999999998   333332          5777  99999999999999999998   88888   766


Q ss_pred             chhhhhhhc
Q 018586          115 NAESQKKIS  123 (353)
Q Consensus       115 ~~~~~~~~~  123 (353)
                      .+.....+.
T Consensus        70 ~f~~~~~l~   78 (85)
T 2j7j_A           70 VGKTWTLYL   78 (85)
T ss_dssp             EESSHHHHH
T ss_pred             ccCCHHHHH
Confidence            655444443

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.19  E-value=6.4e-07  Score=56.99  Aligned_cols=32  Identities=25%  Similarity=0.463  Sum_probs=29.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A           14 ECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999973

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.19  E-value=8.3e-07  Score=55.74  Aligned_cols=31  Identities=26%  Similarity=0.315  Sum_probs=29.1

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+
T Consensus        12 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A           12 FCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             ECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            5888999999999999999999999999996

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.19  E-value=7.6e-07  Score=56.68  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A           14 KCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             ECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57889999999999999999999999999973

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.18  E-value=5.3e-07  Score=57.45  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A           14 KCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             eCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999865

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.18  E-value=8.6e-07  Score=55.89  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=28.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|++.|...+.|..|+++|++++||+|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A           14 ECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            4888999999999999999999999999985

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.18  E-value=9.3e-07  Score=56.32  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|+.|++.|...+.|..|+++|++++||+|+.+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A           14 KCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             ECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999753

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.18  E-value=7.5e-07  Score=56.77  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A           14 QCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58889999999999999999999999999973

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.17  E-value=1.2e-06  Score=52.37  Aligned_cols=34  Identities=32%  Similarity=0.490  Sum_probs=31.1

Q ss_pred             CCCCCCCceeeccccccccChHHHHHHHhhhcCCCC
Q 018586            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus         7 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      .+|++++||.|+.|++.|.....|..|+++  |+++
T Consensus         2 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~e   35 (36)
T 2elr_A            2 SSGSSGKTHLCDMCGKKFKSKGTLKSHKLL--HTAD   35 (36)
T ss_dssp             CCCCCCSSCBCTTTCCBCSSHHHHHHHHHH--HSSC
T ss_pred             CCCCCCCCeecCcCCCCcCchHHHHHHHHH--hcCC
Confidence            368899999999999999999999999999  8765

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.17  E-value=7.4e-07  Score=56.74  Aligned_cols=32  Identities=25%  Similarity=0.328  Sum_probs=29.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en3_A           14 QCKECGMNFSWSCSLFKHLRSHERTDPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSSHHHHHHHHHHHHSCCSSCSC
T ss_pred             eCcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.17  E-value=6.4e-07  Score=55.80  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=29.0

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+
T Consensus        12 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A           12 ECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             cCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            5889999999999999999999999999985

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.17  E-value=8.1e-07  Score=56.53  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=29.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A           14 ECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             EETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             ECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999974

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.17  E-value=1e-06  Score=56.90  Aligned_cols=35  Identities=20%  Similarity=0.317  Sum_probs=29.9

Q ss_pred             CCCCCCceeeccccccccChHHHHHHHh-hhcCCCCCC
Q 018586            8 PKRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP   44 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~~~h~~~~~   44 (353)
                      +|++++||.|..|++.|.....|..|++ +  |+++..
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~--H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHS--HLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHS--SCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhh--cCCCCC
Confidence            4899999999999999999999999999 8  887655

>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...

Probab=98.16  E-value=9.2e-07  Score=86.75  Aligned_cols=123  Identities=14%  Similarity=0.104  Sum_probs=90.6

Q ss_pred             ccCCCceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHH
Q 018586          131 TCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~  210 (353)
                      ++++++.+++|+|+.+.+.-.. ++ ..+.+.. .|+ .|  ++                .           ++++.|.+
T Consensus         6 ~~~~p~~valDtE~~~~~~~~a-~L-vgi~la~-~~~-a~--~i----------------~-----------~~l~~l~~   52 (540)
T 4dfk_A            6 PWPPPEGAFVGFVLSRKEPMWA-DL-LALAAAR-GGR-VH--RA----------------P-----------EPYKALRD   52 (540)
T ss_dssp             CSCCCTTCEEEEEESSSCTTTC-CE-EEEEEEE-TTE-EE--EC----------------S-----------SHHHHHTT
T ss_pred             CCCCCCceEEEEEecCCccCcc-cE-EEEEEEc-CCE-EE--Ee----------------h-----------hhHHHHHH
Confidence            4566678999999999753322 23 3455532 232 22  11                0           35677888


Q ss_pred             HHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCCCCh
Q 018586          211 ILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDP  290 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~A  290 (353)
                      |+              ++.++|+||+.||+.-.++..+  .++||+..+..+.|.  +++|++|++.|++. +   .|.|
T Consensus        53 ~l--------------~d~~kV~hn~K~Dl~~~Gi~~~--~~fDT~laAyLL~p~--~~~L~~La~~yl~~-~---gk~a  110 (540)
T 4dfk_A           53 LK--------------EARGLLAKDLSVLALREGLGLP--PGDDPMLLAYLLDPS--NTTPEGVARRYGGE-W---TEEA  110 (540)
T ss_dssp             CS--------------SBCSTTHHHHHHHHHHTTCCCC--BCCCHHHHHHHHCTT--CCCHHHHHHHHTSC-C---CSCH
T ss_pred             HH--------------cCCCEEEeccHHHHHHcCCCCC--cceeHHHHHHHhCCC--CCCHHHHHHHHhhh-h---ccch
Confidence            88              5578899999999993333333  578999999999887  89999999999766 2   5789


Q ss_pred             HHHHHHHHHHHHHHHhch
Q 018586          291 YEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       291 l~Da~~t~~l~~~~~~~~  308 (353)
                      .+||.+|++||..+..++
T Consensus       111 ~~DA~~t~~L~~~L~~~L  128 (540)
T 4dfk_A          111 GERAALSERLFANLWGRL  128 (540)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998876

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.16  E-value=7.1e-07  Score=56.78  Aligned_cols=32  Identities=19%  Similarity=0.350  Sum_probs=29.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A           14 RCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             ECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999973

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=8.8e-07  Score=56.42  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=29.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|+++|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A           14 ECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999973

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.16  E-value=8.6e-07  Score=56.47  Aligned_cols=32  Identities=25%  Similarity=0.228  Sum_probs=29.4

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A           14 KCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            57889999999999999999999999999973

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.16  E-value=2.1e-06  Score=59.53  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=37.9

Q ss_pred             CCCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCCccccCc
Q 018586            4 EAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQ   50 (353)
Q Consensus         4 ~~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~~C~~C~   50 (353)
                      +....|++++||+|..|++.|...+.|.+|+++  |+++...+..+.
T Consensus         3 ~~~~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~--Htg~~~~~~~~~   47 (66)
T 2epp_A            3 SGSSGLREAGILPCGLCGKVFTDANRLRQHEAQ--HGVTSLQLGYID   47 (66)
T ss_dssp             CCSCSCCCCCCCCCTTTCCCCSCHHHHHHHHHH--HTTTSCCCCSCC
T ss_pred             CCCCCCCCccCcCCCCCCCccCCHHHHHhhhhh--hCCCcccccccc
Confidence            456678999999999999999999999999999  888665555444

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.16  E-value=6.4e-07  Score=57.00  Aligned_cols=32  Identities=25%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A           14 ICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             ECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            58889999999999999999999999999973

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.15  E-value=1.1e-06  Score=56.04  Aligned_cols=31  Identities=23%  Similarity=0.395  Sum_probs=29.2

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|++.|...+.|..|+++|++++||+|.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A           14 RCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            5888999999999999999999999999996

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.15  E-value=8e-07  Score=55.94  Aligned_cols=31  Identities=19%  Similarity=0.357  Sum_probs=28.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A           14 ECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             EETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             eCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5889999999999999999999999999985

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.15  E-value=1.1e-06  Score=54.71  Aligned_cols=30  Identities=33%  Similarity=0.544  Sum_probs=28.4

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c  109 (353)
                      .|+.|+++|...+.|..|+++|++++||+|
T Consensus        13 ~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A           13 LCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             ECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            588999999999999999999999999987

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.14  E-value=1.4e-06  Score=52.15  Aligned_cols=33  Identities=33%  Similarity=0.509  Sum_probs=30.4

Q ss_pred             CCCCCCceeeccccccccChHHHHHHHhhhcCCCC
Q 018586            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      +|++++||.|+.|++.|.....|..|+++  |+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRI--HTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHH--HCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHH--hCCC
Confidence            57899999999999999999999999999  7765

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.13  E-value=1e-06  Score=56.01  Aligned_cols=31  Identities=23%  Similarity=0.325  Sum_probs=29.3

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A           14 NCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             cCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            5888999999999999999999999999997

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.13  E-value=7.9e-07  Score=56.64  Aligned_cols=32  Identities=25%  Similarity=0.467  Sum_probs=29.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A           14 ECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             BCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999974

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.13  E-value=6e-07  Score=55.89  Aligned_cols=30  Identities=30%  Similarity=0.443  Sum_probs=27.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c  109 (353)
                      .|+.|+++|...+.|..|+++|++++||+|
T Consensus        13 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A           13 RCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             eCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            578899999999999999999999999987

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.11  E-value=9.8e-07  Score=56.16  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=29.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A           14 ECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            58899999999999999999999999999973

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.11  E-value=8.6e-07  Score=65.46  Aligned_cols=46  Identities=15%  Similarity=0.358  Sum_probs=41.1

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCccc
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKL   52 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~   52 (353)
                      ..++|++++||.|+.|++.|...+.|..|+++  |+++++ .|..|...
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~--Ht~ekp~~C~~~~~~   62 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSHLNI--HNEEFQKRAKRQERR   62 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHHHHH--HHHHHHHHCCCCSCC
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHHHHH--hCCCCCcccchhhhH
Confidence            35779999999999999999999999999999  998888 98877644

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.10  E-value=1.1e-06  Score=55.25  Aligned_cols=31  Identities=19%  Similarity=0.310  Sum_probs=29.0

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|+++|...+.|..|+++|++++||.|.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A           14 NCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             EETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             ECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5899999999999999999999999999984

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.10  E-value=8.7e-07  Score=56.16  Aligned_cols=31  Identities=19%  Similarity=0.397  Sum_probs=29.4

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|++.|...+.|..|+++|++++||+|+
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A           14 ECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             EETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             cCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            5899999999999999999999999999996

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.09  E-value=1.7e-06  Score=50.91  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=27.0

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~  108 (353)
                      .|+.|++.|...+.|..|+++|++++||.
T Consensus         4 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            4 ACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             cCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            58899999999999999999999999975

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=8.6e-07  Score=54.90  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=28.3

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c  109 (353)
                      .|+.|+++|...+.|..|+++|++++||.|
T Consensus        12 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A           12 ECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             ECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            588999999999999999999999999987

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.07  E-value=1.2e-06  Score=54.57  Aligned_cols=30  Identities=23%  Similarity=0.234  Sum_probs=28.3

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c  109 (353)
                      .|+.|+++|.+.+.|..|+++|++++||+|
T Consensus        13 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A           13 KCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             ECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             eCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            588999999999999999999999999987

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.07  E-value=1.1e-06  Score=55.31  Aligned_cols=31  Identities=19%  Similarity=0.401  Sum_probs=29.0

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|+++|...+.|..|+++|++++||+|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A           14 ECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             ECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             ECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            5889999999999999999999999999985

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.06  E-value=1.5e-06  Score=57.49  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             ccccccccccCchhHHHHHH-HhcCCCCCCcccCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKE-ACSLSAPVPFEKTLSN  115 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~-~h~~~k~~~c~~~~~~  115 (353)
                      .|+.|++.|...+.|..|++ +|++++||.|+.|+..
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~   50 (54)
T 2eps_A           14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG   50 (54)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCS
T ss_pred             ECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCC
Confidence            58889999999999999987 8999999999998654

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.06  E-value=9.7e-07  Score=56.26  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=29.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEK  111 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~  111 (353)
                      .|+.|++.|...+.|..|+++|++++||.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A           14 KCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             BCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            58889999999999999999999999999973

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.05  E-value=2.8e-06  Score=58.90  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=29.0

Q ss_pred             ccc--cccccccCchhHHHHH-HHhcCCCCCCcccC
Q 018586           80 GCN--LCMNIFDSPSSLIKHK-EACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~--~C~k~F~~~s~L~~H~-~~h~~~k~~~c~~~  112 (353)
                      .|+  .|+++|.+.++|+.|+ ++|+++|||.|-+.
T Consensus        29 kC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~   64 (73)
T 1x3c_A           29 RCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEV   64 (73)
T ss_dssp             BCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSC
T ss_pred             ECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccccc
Confidence            465  5999999999999997 68999999999764

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=1.2e-06  Score=54.49  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=27.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c  109 (353)
                      .|+.|+++|...+.|..|+++|++++||+|
T Consensus        13 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A           13 PCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             ECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            478899999999999999999999999987

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.02  E-value=1.4e-06  Score=61.61  Aligned_cols=47  Identities=15%  Similarity=0.228  Sum_probs=40.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccCCcchhhhhhhcccc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~~~~~~~~~~~~~  126 (353)
                      .|+.|++.|...+.|..|+++|++++||+|+.|+..+.....+..+.
T Consensus        19 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~   65 (74)
T 2lce_A           19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT   65 (74)
T ss_dssp             CCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHH
T ss_pred             ECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHH
Confidence            58889999999999999999999999999999988776666665543

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.01  E-value=1.8e-06  Score=54.95  Aligned_cols=31  Identities=23%  Similarity=0.414  Sum_probs=29.1

Q ss_pred             ccccccccccCchhHHHHHHHhcC-CCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSL-SAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~-~k~~~c~  110 (353)
                      .|+.|+++|...+.|..|+++|++ ++||+|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A           14 KCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             ECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            588999999999999999999999 9999996

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.01  E-value=2.7e-06  Score=51.59  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=30.6

Q ss_pred             CCCCCceeec--cccccccChHHHHHHHhhhcCCCCCC
Q 018586            9 KRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP   44 (353)
Q Consensus         9 h~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~h~~~~~   44 (353)
                      |++++||.|+  .|++.|...+.|.+|+++  |+++++
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~k~   36 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHK--HEMTLK   36 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHH--HHTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHH--hCCCCC
Confidence            6789999999  599999999999999999  877654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.99  E-value=3.5e-06  Score=50.90  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=26.3

Q ss_pred             CCCCCCceeeccccccccChHHHHHHHhh
Q 018586            8 PKRSTARHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      ++.++|||+|+.|+++|.++++|.+|+..
T Consensus         2 ~~~gekp~~C~~CgK~F~~~s~L~~H~py   30 (36)
T 1fv5_A            2 SLLKPARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CSSSCCCCEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCCccCeECCCCCCccCCHhHccCcCCe
Confidence            46799999999999999999999999854

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.98  E-value=3.4e-06  Score=50.94  Aligned_cols=33  Identities=24%  Similarity=0.519  Sum_probs=29.9

Q ss_pred             CCCCCCceeec--cccccccChHHHHHHHhhhcCCCC
Q 018586            8 PKRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus         8 ~h~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      .|++++||.|.  .|++.|...+.|..|+++  |+++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--H~~e   36 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRW--HTGE   36 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHH--HHTT
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHh--cCCC
Confidence            47899999999  499999999999999999  8765

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.96  E-value=3.7e-06  Score=49.39  Aligned_cols=30  Identities=33%  Similarity=0.703  Sum_probs=27.9

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~   44 (353)
                      +||.|+.|++.|...+.|..|+++  |+++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~--H~~~~~   30 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL--HELLGE   30 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH--HTTTCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH--hCCCCC
Confidence            589999999999999999999999  888776

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.96  E-value=2.7e-06  Score=54.51  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=30.2

Q ss_pred             ccc--cccccccCchhHHHHHHHhcCCCCCCcccC
Q 018586           80 GCN--LCMNIFDSPSSLIKHKEACSLSAPVPFEKT  112 (353)
Q Consensus        80 ~C~--~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~  112 (353)
                      .|.  .|++.|...+.|..|+++|++++||+|..|
T Consensus        14 ~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A           14 ACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             ECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             ECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            476  899999999999999999999999999865

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=97.96  E-value=3.1e-06  Score=51.66  Aligned_cols=30  Identities=20%  Similarity=0.274  Sum_probs=28.2

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c  109 (353)
                      .|+.|++.|...+.|..|+++|++++||.+
T Consensus         8 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            8 TCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             ECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            589999999999999999999999999876

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=97.95  E-value=3.3e-06  Score=55.81  Aligned_cols=37  Identities=19%  Similarity=0.500  Sum_probs=31.4

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~   44 (353)
                      .+.|++++||.|+.|++.|...+.|..|+++  |+++++
T Consensus        16 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~kp   52 (54)
T 1yui_A           16 RSRSQSEQPATCPICYAVIRQSRNLRRHLEL--RHFAKP   52 (54)
T ss_dssp             HHHHTSSCCEECTTTCCEESSHHHHHHHHHH--HTTTSC
T ss_pred             HHhcCCCCCccCCCCCcccCCHHHHHHHHHH--hccCCC
Confidence            4567889999999999999999999999998  887654

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.92  E-value=3.5e-06  Score=53.03  Aligned_cols=30  Identities=27%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c  109 (353)
                      .|+.|++.|...+.|..|+++|++++||.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A           14 ECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             ECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            588999999999999999999999999987

>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A

Probab=97.88  E-value=5.1e-05  Score=72.24  Aligned_cols=83  Identities=22%  Similarity=0.268  Sum_probs=64.3

Q ss_pred             CCCcEEEecccHHHHHHhc--CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCC---------------C
Q 018586          226 GKARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV---------------H  288 (353)
Q Consensus       226 ~~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~---------------H  288 (353)
                      +.+.+-||||+.+|+.+|.  .+.....++||+..+..+.+.  +++|+.|++.|||+.+..+.               .
T Consensus       180 dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~--~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~  257 (428)
T 3saf_A          180 DPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLS  257 (428)
T ss_dssp             CTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCS--CCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHH
T ss_pred             CCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCC--CCCHHHHHHHHcCCCCCccccccccccCCCCHHHHH
Confidence            3556789999999999994  333334589999877666543  57999999999998876541               2


Q ss_pred             ChHHHHHHHHHHHHHHHhchhh
Q 018586          289 DPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       289 ~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      -|..||..+..||..+..+..+
T Consensus       258 YAA~DA~~ll~L~~~L~~~L~~  279 (428)
T 3saf_A          258 YARDDTHYLLYIYDKMRLEMWE  279 (428)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            3678999999999999888665

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.87  E-value=1e-05  Score=57.57  Aligned_cols=39  Identities=28%  Similarity=0.512  Sum_probs=35.6

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-cc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C   46 (353)
                      .+.|++++||.|+.|++.|.....|..|+++  |+++++ .|
T Consensus        38 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~--H~~~~p~~C   77 (77)
T 2cot_A           38 RRTHTGEKPYKCDECGKAFIQRSHLIGHHRV--HTGSGPSSG   77 (77)
T ss_dssp             HTTTCCSCSEECSSSCCEESSHHHHHHHGGG--SCCCCCCCC
T ss_pred             HHHcCCCcCeeCCCCCCccCCHHHHHHHHHH--hCCCCCCCC
Confidence            4679999999999999999999999999999  998887 65

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.84  E-value=1.1e-05  Score=45.51  Aligned_cols=29  Identities=17%  Similarity=0.430  Sum_probs=26.6

Q ss_pred             CCceeeccccccccChHHHHHHHhhhcCCCC
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      ++||.|+.|++.|.....|..|+++  |+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~--h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLET--HDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHT--TCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHH--hccC
Confidence            4799999999999999999999998  8765

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.80  E-value=1.1e-05  Score=44.71  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=23.6

Q ss_pred             CCceeeccccccccChHHHHHHHhh
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      ++||+|+.|++.|...+.|..|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTT
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHh
Confidence            4799999999999999999999988

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.79  E-value=1.4e-05  Score=44.20  Aligned_cols=27  Identities=15%  Similarity=0.445  Sum_probs=24.8

Q ss_pred             CCceeeccccccccChHHHHHHHhhhcCC
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKISYHS   40 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~h~   40 (353)
                      ++||.|+.|++.|...+.|..|+++  |+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~--H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRT--HG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH--CC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHH--cc
Confidence            4799999999999999999999998  64

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.78  E-value=1.2e-05  Score=45.17  Aligned_cols=28  Identities=36%  Similarity=0.694  Sum_probs=25.8

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      +||.|+.|++.|...+.|..|+++  |+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILL--HENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTG--GGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHH--hcCC
Confidence            589999999999999999999999  8765

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.77  E-value=1.2e-05  Score=60.88  Aligned_cols=40  Identities=30%  Similarity=0.422  Sum_probs=36.2

Q ss_pred             CCCCceeeccccccccChHHHHHH-HhhhcCCCCCC-ccccCcc
Q 018586           10 RSTARHKCVACYKQFKRKDHLIEH-MKISYHSVHQP-KCAVCQK   51 (353)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H-~~~~~h~~~~~-~C~~C~~   51 (353)
                      ++++||.|+.||+.|...+.|..| +++  |+++++ .|..+..
T Consensus        46 ~~ekpf~C~~Cgk~F~~~~~L~~H~~r~--Htgekpy~C~~~~~   87 (102)
T 2ghf_A           46 VLNSSYVCVECNFLTKRYDALSEHNLKY--HPGEENFKLTMVKR   87 (102)
T ss_dssp             CCSCCEEETTTTEEESSTHHHHTHHHHT--STTCCCEEEEECCC
T ss_pred             CCCCCcCCCCCCcccCCHHHHHHHHHHh--cCCCCCeeCCcccC
Confidence            578999999999999999999999 788  999999 9987553

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.76  E-value=5.7e-06  Score=52.97  Aligned_cols=36  Identities=22%  Similarity=0.514  Sum_probs=32.0

Q ss_pred             CCCCCCCCceeec--cccccccChHHHHHHHhhhcCCCCC
Q 018586            6 ELPKRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQ   43 (353)
Q Consensus         6 ~~~h~~~k~~~C~--~C~k~f~~~~~l~~H~~~~~h~~~~   43 (353)
                      ...|++++||.|+  .|++.|...++|.+|+++  |++++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~--H~~ek   47 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT--HLEDR   47 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHH--HTTTC
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHH--ccCCC
Confidence            5679999999996  799999999999999999  87753

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.75  E-value=1.6e-05  Score=44.31  Aligned_cols=28  Identities=25%  Similarity=0.526  Sum_probs=25.3

Q ss_pred             CCceeeccccccccChHHHHHHHhhhcCCC
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~   41 (353)
                      ++||.|+.|++.|...+.|..|+++  |++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~--h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRV--HTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTT--SCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHh--cCC
Confidence            4799999999999999999999998  753

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=97.73  E-value=1e-05  Score=56.66  Aligned_cols=37  Identities=14%  Similarity=0.154  Sum_probs=21.5

Q ss_pred             ccccccCchhHHHHHHHhcCCCCCCcc--cCCcchhhhh
Q 018586           84 CMNIFDSPSSLIKHKEACSLSAPVPFE--KTLSNAESQK  120 (353)
Q Consensus        84 C~k~F~~~s~L~~H~~~h~~~k~~~c~--~~~~~~~~~~  120 (353)
                      |+++|...+.|..|+++|++++||+|+  .|+..+....
T Consensus        25 C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~   63 (72)
T 2epa_A           25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD   63 (72)
T ss_dssp             TCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHH
T ss_pred             CccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHH
Confidence            666666666666666666666666663  3554444333

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.72  E-value=1.6e-05  Score=44.54  Aligned_cols=28  Identities=29%  Similarity=0.660  Sum_probs=25.6

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      +||.|+.|++.|...+.|..|+++  |+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRS--HTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH--HSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH--hcCC
Confidence            589999999999999999999999  7764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.72  E-value=1.5e-05  Score=46.93  Aligned_cols=27  Identities=30%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~  106 (353)
                      .|+.|+++|.+.+.|..|+++|++++|
T Consensus         9 ~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            9 VCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             ECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            589999999999999999999998875

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.68  E-value=2.3e-05  Score=45.19  Aligned_cols=29  Identities=34%  Similarity=0.553  Sum_probs=26.6

Q ss_pred             CCceeec--cccccccChHHHHHHHhhhcCCCC
Q 018586           12 TARHKCV--ACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        12 ~k~~~C~--~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      ++||.|+  .|++.|...+.|..|+++  |+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKS--HQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG--GTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHH--ccCC
Confidence            4799999  899999999999999999  8875

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.66  E-value=1.9e-05  Score=47.28  Aligned_cols=27  Identities=15%  Similarity=0.358  Sum_probs=24.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~  106 (353)
                      .|+.|+++|...+.|..|+++|++++|
T Consensus        11 ~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A           11 SCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            589999999999999999999998875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.65  E-value=2.6e-05  Score=44.59  Aligned_cols=29  Identities=31%  Similarity=0.584  Sum_probs=26.1

Q ss_pred             Cceeec--cccccccChHHHHHHHhhhcCCCCC
Q 018586           13 ARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQ   43 (353)
Q Consensus        13 k~~~C~--~C~k~f~~~~~l~~H~~~~~h~~~~   43 (353)
                      +||.|+  .|++.|...+.|..|+++  |++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~--H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRT--HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT--TSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHH--hcCCC
Confidence            589998  999999999999999999  88753

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.65  E-value=1.8e-05  Score=44.26  Aligned_cols=28  Identities=39%  Similarity=0.657  Sum_probs=25.6

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      +||.|+.|++.|.....|..|+++  |+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~--H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRI--HSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHH--HHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHH--hcCC
Confidence            589999999999999999999998  7765

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.65  E-value=3.6e-05  Score=56.82  Aligned_cols=61  Identities=15%  Similarity=0.094  Sum_probs=48.2

Q ss_pred             CCCCCCCCccccccccccccccccCchhHHHHHHH-hcCCCC--------CCcccCCcchhhhhhhcccc
Q 018586           66 PLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEA-CSLSAP--------VPFEKTLSNAESQKKISGAI  126 (353)
Q Consensus        66 ~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~-h~~~k~--------~~c~~~~~~~~~~~~~~~~~  126 (353)
                      .+.|...+..+....|+.|++.|...+.|..|+++ |.++++        |.|+.|+..+.....+..++
T Consensus        13 ~~~c~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~   82 (95)
T 2ej4_A           13 ELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI   82 (95)
T ss_dssp             CCCCCCCCSSCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHH
T ss_pred             CceeEeecCCcCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHH
Confidence            45565555555555799999999999999999998 988888        99999988777766665544

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.65  E-value=2.5e-06  Score=49.76  Aligned_cols=30  Identities=33%  Similarity=0.523  Sum_probs=27.5

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~   44 (353)
                      +||.|+.|++.|...+.|..|+++  |+++++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~--H~~~kp   30 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT--AFIVVA   30 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS--SSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH--HccCCC
Confidence            589999999999999999999999  988765

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.63  E-value=1.2e-05  Score=57.28  Aligned_cols=42  Identities=19%  Similarity=0.238  Sum_probs=29.6

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcc
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK   51 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~   51 (353)
                      +++|.+.+|+.|+.|++.|. .+.|..|+ .  |.++++ .|..|++
T Consensus         9 ~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~--~c~~~~~~C~~C~~   51 (75)
T 2d9k_A            9 EETECPLRLAVCQHCDLELS-ILKLKEHE-D--YCGARTELCGNCGR   51 (75)
T ss_dssp             CCCCCCCCCEECSSSCCEEC-HHHHHHHH-H--HHHHCEEECSSSCC
T ss_pred             CcccCCCcccCCcccChHhh-HHHHHHHH-h--HcCCCceEcccCCC
Confidence            45688888999999988884 77788888 6  555554 4444433

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.78  E-value=8e-06  Score=46.00  Aligned_cols=28  Identities=32%  Similarity=0.632  Sum_probs=25.6

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      +||.|+.|++.|...+.|..|+++  |+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQ--HTGE   28 (29)
Confidence            589999999999999999999998  8764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.61  E-value=1.7e-05  Score=44.30  Aligned_cols=28  Identities=39%  Similarity=0.750  Sum_probs=25.4

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      +||.|+.|++.|...+.|..|+++  |+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKI--HIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHH--HHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH--hccC
Confidence            589999999999999999999998  7664

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.61  E-value=1.5e-06  Score=50.67  Aligned_cols=28  Identities=21%  Similarity=0.430  Sum_probs=25.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPV  107 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~  107 (353)
                      .|+.|+++|.+.+.|..|+++|++++||
T Consensus         4 ~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            4 ACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             SSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            5888999999999999999999999886

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.61  E-value=2.6e-05  Score=43.85  Aligned_cols=29  Identities=17%  Similarity=0.305  Sum_probs=25.8

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~   43 (353)
                      +||.|+.|++.|...+.|..|+++  |.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~--h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKT--KHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH--HTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHH--HccCC
Confidence            589999999999999999999998  76654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.61  E-value=2.6e-05  Score=44.04  Aligned_cols=28  Identities=43%  Similarity=0.714  Sum_probs=25.1

Q ss_pred             CceeeccccccccChHHHHHH-HhhhcCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEH-MKISYHSVH   42 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H-~~~~~h~~~   42 (353)
                      +||.|+.|++.|...+.|..| +++  |+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~--H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKI--HSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTT--SCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHH--ccCC
Confidence            589999999999999999999 678  8765

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.60  E-value=3.2e-05  Score=43.48  Aligned_cols=27  Identities=19%  Similarity=0.226  Sum_probs=24.4

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~  106 (353)
                      .|+.|++.|...+.|..|+++|+++++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            4 QCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             cCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            588999999999999999999998764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.60  E-value=3.3e-05  Score=43.18  Aligned_cols=26  Identities=19%  Similarity=0.445  Sum_probs=23.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+.|+++|...+.|..|+++|++++
T Consensus         4 ~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            4 VCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999998764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.75  E-value=9.1e-06  Score=46.01  Aligned_cols=29  Identities=28%  Similarity=0.571  Sum_probs=26.1

Q ss_pred             CCceeeccccccccChHHHHHHHhhhcCCCC
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      ++||.|+.|++.|...+.|..|+++  |+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~--h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRI--HTGE   29 (30)
Confidence            4789999999999999999999998  7764

>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9

Probab=97.59  E-value=0.00059  Score=59.96  Aligned_cols=157  Identities=13%  Similarity=0.131  Sum_probs=98.4

Q ss_pred             CceeeccCccccccCC-----------------------CCccceeEEeeecCCCCe-----E--EeeeccCCCC-cccc
Q 018586          135 PKAVAMDCEMVGGGSN-----------------------GTLDLCARVCLVDEDENV-----I--FHTYVQPQLP-VTNY  183 (353)
Q Consensus       135 ~~~~~~D~Ettg~~~~-----------------------~~~~il~~v~ivd~~g~~-----~--~~~lv~P~~~-i~~~  183 (353)
                      .+||++|+|++|+...                       .++++  .+++.+.+|+.     .  |+-....... ..+.
T Consensus        24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQl--Glt~~~~~g~~p~~~~~wqFNF~F~~~~d~~~~~  101 (252)
T 2d5r_A           24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQL--GLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQD  101 (252)
T ss_dssp             CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEE--EEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHH
T ss_pred             CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEE--EEEEEccCCCCCCCceeEEEEEEECCcccccCHH
Confidence            4699999999996411                       11122  45666777764     2  3333222221 1111


Q ss_pred             cc---ccCCCCHhh-hcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-----Cc--------
Q 018586          184 RY---EVTGLTEED-IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-----MN--------  246 (353)
Q Consensus       184 ~~---~~~GIt~e~-l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-----~~--------  246 (353)
                      ..   .-+||.=+. ...+.+..+..+.+..   ++   +.    -+++..+|.++..+|+.+|-     ..        
T Consensus       102 Si~fL~~~G~DF~k~~~~GI~~~~F~ell~~---sg---lv----l~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F  171 (252)
T 2d5r_A          102 SIELLTTSGIQFKKHEEEGIETQYFAELLMT---SG---VV----LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDF  171 (252)
T ss_dssp             HHHHHHHHTCCHHHHHHHCBCHHHHHHHHHT---TT---SS----SSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHH
T ss_pred             HHHHHHHcCCChhHHHhcCCCHHHHHHHHHh---cC---cc----cCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHH
Confidence            11   125776443 3456666543333322   11   00    12457899999999999876     12        


Q ss_pred             -------CCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhch
Q 018586          247 -------YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       247 -------~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                             +|  .+.|+..+++....  ..-+|+.|++.+ |+.--+..|.|-.|+..|+.+|.++++..
T Consensus       172 ~~~l~~~FP--~iyD~K~l~~~~~~--l~~gL~~la~~L-~v~r~g~~HqAGsDsllT~~~F~km~~~~  235 (252)
T 2d5r_A          172 FEILRLFFP--VIYDVKYLMKSCKN--LKGGLQEVAEQL-ELERIGPQHQAGSDSLLTGMAFFKMREMF  235 (252)
T ss_dssp             HHHHHHHCS--CEEEHHHHGGGCTT--CCSSHHHHHHHH-TCCCCSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCc--chhhHHHHHHHhcc--cCCCHHHHHHHc-CCCccCcccchhhhHHHHHHHHHHHHHHh
Confidence                   44  37898888877642  246799999998 88854558999999999999999998775

>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*

Probab=97.56  E-value=0.00037  Score=59.70  Aligned_cols=92  Identities=17%  Similarity=0.168  Sum_probs=64.5

Q ss_pred             HHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcC--cCCCCceee-cccccCCcccCCCCCcHHHHHHHHhCCc
Q 018586          206 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM--NYPDHMLRD-TAKYRPLMKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~--~~~~~~~~D-t~~l~~~~~~~~~~~~L~~l~~~~~~~~  282 (353)
                      +.+.+++            .+.+.+.||||+.+|+..|..  +.....++| |+..+..+.+ ..+++|+.|++.++|..
T Consensus        86 ~~L~~lL------------~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~-~~~~~L~~L~~~~l~~~  152 (208)
T 2e6m_A           86 QGLKMLL------------ENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQ  152 (208)
T ss_dssp             HHHHHHH------------TCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTC-CCCCCHHHHHHHHHSCB
T ss_pred             HHHHHHh------------cCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccC-CCChhHHHHHHHHcCCC
Confidence            3577778            234568899999999999963  333333899 5444333333 56899999999998877


Q ss_pred             CCCC-----------------CCChHHHHHHHHHHHHHHHhchhh
Q 018586          283 IQSG-----------------VHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       283 ~~~~-----------------~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      +..+                 ..-|..||.++..|+..+..+..+
T Consensus       153 ~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~  197 (208)
T 2e6m_A          153 LLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDT  197 (208)
T ss_dssp             CCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred             cCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            5221                 112568999999999999988765

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.56  E-value=3.8e-05  Score=42.16  Aligned_cols=26  Identities=31%  Similarity=0.581  Sum_probs=23.4

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCC
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSV   41 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~   41 (353)
                      ||.|+.|++.|...+.|..|+++  |++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~--h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRV--HKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGG--TCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHH--cCC
Confidence            68999999999999999999998  775

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=97.54  E-value=2.6e-05  Score=45.98  Aligned_cols=27  Identities=15%  Similarity=0.471  Sum_probs=24.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~  106 (353)
                      .|+.|++.|...+.|..|+++|++++|
T Consensus         9 ~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            9 VCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             eCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            588999999999999999999998875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.54  E-value=3.2e-05  Score=43.16  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=23.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+.|+++|...+.|..|+++|++++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            4 KCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             ECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             cCCCCCCccCChhHHHHHHHHhcCCC
Confidence            58999999999999999999998864

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=97.53  E-value=4.4e-06  Score=57.02  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=13.3

Q ss_pred             HHhhhcCCCCCC-ccccCcccCCChHHH
Q 018586           33 HMKISYHSVHQP-KCAVCQKLSKSFESL   59 (353)
Q Consensus        33 H~~~~~h~~~~~-~C~~C~~~f~~~~~l   59 (353)
                      |+++  |+++++ .|..|++.|.....|
T Consensus         5 h~~~--H~~~k~~~C~~C~k~F~~~~~l   30 (62)
T 1vd4_A            5 DERD--STNRASFKCPVCSSTFTDLEAN   30 (62)
T ss_dssp             CSSS--CCSSSEEECSSSCCEEEHHHHH
T ss_pred             HHHH--cCCCCCccCCCCCchhccHHHh
Confidence            4444  555555 555555555554444

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.53  E-value=3.7e-05  Score=46.30  Aligned_cols=29  Identities=21%  Similarity=0.321  Sum_probs=26.2

Q ss_pred             ccc--cccccccCchhHHHHHHHhcCCCCCC
Q 018586           80 GCN--LCMNIFDSPSSLIKHKEACSLSAPVP  108 (353)
Q Consensus        80 ~C~--~C~k~F~~~s~L~~H~~~h~~~k~~~  108 (353)
                      .|+  .|+++|.+.+.|..|+++|++++||.
T Consensus         8 ~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            8 LCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             ECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             ECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            577  59999999999999999999999874

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.53  E-value=3.6e-05  Score=42.86  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=23.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+.|+++|.+.+.|..|+++|++++
T Consensus         4 ~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            4 KCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             cCCCCCcccCCHHHHHHHHHHhccCC
Confidence            58899999999999999999998764

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.53  E-value=1.5e-05  Score=54.86  Aligned_cols=45  Identities=16%  Similarity=0.321  Sum_probs=37.8

Q ss_pred             cccccccccccCchhHHHHHHHhcCCCCCCcc-cCCcchhhhhhhccc
Q 018586           79 RGCNLCMNIFDSPSSLIKHKEACSLSAPVPFE-KTLSNAESQKKISGA  125 (353)
Q Consensus        79 ~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~-~~~~~~~~~~~~~~~  125 (353)
                      ..|+.|+++|. .+.|..|+++ ++++||+|+ .|+..+...+.+..+
T Consensus        11 ~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H   56 (66)
T 2eod_A           11 QPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGH   56 (66)
T ss_dssp             EECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHH
T ss_pred             eeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHH
Confidence            36999999999 9999999999 999999999 998776655555444

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.53  E-value=2.6e-05  Score=43.63  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=23.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+.|++.|...+.|..|+++|++++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            4 ACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             ECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             cCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999998764

>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A

Probab=97.48  E-value=0.00092  Score=60.68  Aligned_cols=159  Identities=14%  Similarity=0.134  Sum_probs=100.8

Q ss_pred             CCCceeeccCccccccCCC-----------------------CccceeEEeeecCCCCe-----E--EeeeccCCC-Ccc
Q 018586          133 RGPKAVAMDCEMVGGGSNG-----------------------TLDLCARVCLVDEDENV-----I--FHTYVQPQL-PVT  181 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~~~~-----------------------~~~il~~v~ivd~~g~~-----~--~~~lv~P~~-~i~  181 (353)
                      ...+||++|+|++|+....                       ++++  .+++.|.+|+.     .  |+-...... ...
T Consensus        43 ~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQl--GLt~fd~~G~~p~~~~twqFNF~F~~~~d~~~  120 (333)
T 2p51_A           43 ERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQI--GLALSDEEGNAPVEACTWQFNFTFNLQDDMYA  120 (333)
T ss_dssp             TTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEE--EEEEECTTSCCCTTCSEEEEEBCCCTTTSCCC
T ss_pred             hhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEE--EEEEEccCCCCCCCceeEEEEEEECCcccccC
Confidence            3457999999999964211                       1112  45666777764     2  344433322 111


Q ss_pred             cccc---ccCCCCHhh-hcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-----Cc------
Q 018586          182 NYRY---EVTGLTEED-IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-----MN------  246 (353)
Q Consensus       182 ~~~~---~~~GIt~e~-l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-----~~------  246 (353)
                      +...   .-+||.=+. ..++.+..+..+.+..   ++   +.    -.++..+|.++..+|+.+|-     ..      
T Consensus       121 ~~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~---SG---Lv----l~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~  190 (333)
T 2p51_A          121 PESIELLTKSGIDFKKHQEVGIEPADFAELLIG---SG---LV----LQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYE  190 (333)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHT---TT---SS----SCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHH
T ss_pred             HHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHh---cC---cc----cCCCceEEEeccchhHHHHHHHhcCCCCCCCHH
Confidence            1111   126887444 4466666654433332   11   01    12456889999999999875     11      


Q ss_pred             ---------CCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhch
Q 018586          247 ---------YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       247 ---------~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                               +|.  +.|+..+++....  ..-+|+.+++.+ |+.-.+..|.|-.|+..|+.+|.++++..
T Consensus       191 eF~~~l~~~FP~--iYD~K~l~~~~~~--l~ggL~~lA~~L-~v~Rig~~HqAGsDSlLT~~~F~kl~~~~  256 (333)
T 2p51_A          191 EFYKILCIYFPK--NYDIKYIMKSVLN--NSKGLQDIADDL-QIHRIGPQHQAGSDALLTARIFFEIRSRY  256 (333)
T ss_dssp             HHHHHHHHHSSS--EEEHHHHHTTTTC--CCCCHHHHHHHT-TCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcc--hhhHHHHHHHhcc--ccCCHHHHHHHc-CCCccCcchhhhhHHHHHHHHHHHHHHHh
Confidence                     443  7898888877642  246899999998 88855559999999999999999999875

>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*

Probab=97.48  E-value=0.00068  Score=63.87  Aligned_cols=159  Identities=14%  Similarity=0.135  Sum_probs=93.8

Q ss_pred             cCCCceeeccCcccccc-CCC---CccceeEEeeecCCCCe--EEeeeccC-CCCcccccc------ccCCCC---Hh--
Q 018586          132 CRGPKAVAMDCEMVGGG-SNG---TLDLCARVCLVDEDENV--IFHTYVQP-QLPVTNYRY------EVTGLT---EE--  193 (353)
Q Consensus       132 ~~~~~~~~~D~Ettg~~-~~~---~~~il~~v~ivd~~g~~--~~~~lv~P-~~~i~~~~~------~~~GIt---~e--  193 (353)
                      .+..+++++|+|+++.+ ++.   ..++ ..+++++..+..  +|. ++++ .....++..      .+..++   +.  
T Consensus       103 ~p~l~vlsfDIEt~~~~fP~~~~~~d~I-i~Is~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  180 (388)
T 1noy_A          103 RKFVRVANCDIEVTGDKFPDPMKAEYEI-DAITHYDSIDDRFYVFD-LLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEIL  180 (388)
T ss_dssp             GGGCCEEEEEEEECCSSCCCTTTCCSCE-EEEEEEETTTTEEEEEE-ECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHH
T ss_pred             CCCeEEEEEEEEeCCCCCCCCCCCCCeE-EEEEEEEecCCeEEEEE-EeeccCCCCCccccccccccccccccccccccC
Confidence            45678999999999821 221   1233 456666565553  232 2433 222111100      011111   11  


Q ss_pred             -h--hcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc----C--c---------CCC-----
Q 018586          194 -D--IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR----M--N---------YPD-----  249 (353)
Q Consensus       194 -~--l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~----~--~---------~~~-----  249 (353)
                       .  +....+..+++..|.+++...+           ..+|||||+ .||+.+|.    .  +         .++     
T Consensus       181 ~~v~v~~~~~E~~LL~~f~~~i~~~d-----------PDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~  249 (388)
T 1noy_A          181 DRVIYMPFDNERDMLMEYINLWEQKR-----------PAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKL  249 (388)
T ss_dssp             TTEEEEEESCHHHHHHHHHHHHHHSC-----------CSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHHhC-----------CcEEEecCCCCccHHHHHHHHHHHcCCccccccCccccccccc
Confidence             1  2345678899999999996553           369999997 67998865    1  1         110     


Q ss_pred             ---------------CceeecccccCCc-ccCCCCCcHHHHHHHHhCCcCCCCCCC----------------hHHHHHHH
Q 018586          250 ---------------HMLRDTAKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGVHD----------------PYEDCVSV  297 (353)
Q Consensus       250 ---------------~~~~Dt~~l~~~~-~~~~~~~~L~~l~~~~~~~~~~~~~H~----------------Al~Da~~t  297 (353)
                                     ..++|+..+.+.+ +....+|+|+.+++.+||.. ....+.                .+.||..|
T Consensus       250 ~~~~~g~~~~~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~-K~d~~~~i~~~~~~~~~~l~~Y~~~D~~l~  328 (388)
T 1noy_A          250 LQNMYGSKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKG-KLPYDGPINKLRETNHQRYISYNIIDVESV  328 (388)
T ss_dssp             CCGGGCSCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCC-CCCCSSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhCCcceEEEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCC-CCCcHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence                           1145666555553 22267899999999888876 332212                36799999


Q ss_pred             HHHHHHH
Q 018586          298 MRLYKRF  304 (353)
Q Consensus       298 ~~l~~~~  304 (353)
                      ++|+.++
T Consensus       329 ~~L~~kl  335 (388)
T 1noy_A          329 QAIDKIR  335 (388)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999884

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.48  E-value=4e-05  Score=43.04  Aligned_cols=26  Identities=27%  Similarity=0.612  Sum_probs=23.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+.|+++|...+.|..|+++|++++
T Consensus         5 ~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            5 QCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             ECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             cCCCCCcccCCHHHHHHHHHHhccCC
Confidence            58999999999999999999998764

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.60  E-value=1.7e-05  Score=43.41  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=22.6

Q ss_pred             CceeeccccccccChHHHHHHHhh
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      +||.|+.|++.|...+.|..|+++
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            589999999999999999999987

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.47  E-value=6.6e-05  Score=45.76  Aligned_cols=25  Identities=16%  Similarity=0.169  Sum_probs=22.4

Q ss_pred             cccc--ccccccCchhHHHHHHHhcCC
Q 018586           80 GCNL--CMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~--C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      .|+.  |+++|.+.+.|..|+++|+++
T Consensus        11 ~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A           11 KCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             ECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            5765  999999999999999999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.46  E-value=5.8e-05  Score=44.67  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=23.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+.|++.|...+.|..|+++|++++
T Consensus        11 ~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A           11 LCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             ecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            58899999999999999999998864

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.58  E-value=1.8e-05  Score=44.40  Aligned_cols=26  Identities=31%  Similarity=0.497  Sum_probs=23.5

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+.|+++|...+.|..|+++|++++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            4 QCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            58999999999999999999998764

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.44  E-value=3.7e-06  Score=59.99  Aligned_cols=62  Identities=19%  Similarity=0.233  Sum_probs=46.9

Q ss_pred             HHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc----CCCCCCCCCCccccccccccccccccCchhHHHHHHHhcC
Q 018586           29 HLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        29 ~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~----~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h~~  103 (353)
                      .|..|+++  |.++++ .|..|++.|. .+.|..|+    ..++            .|+.|++.|. ...|..|+++|.+
T Consensus         4 ~L~~H~~~--~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~------------~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            4 GSSGHEET--ECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTE------------LCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCSCCCCC--CCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEE------------ECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             HHHhhCcc--cCCCcccCCcccChHhh-HHHHHHHHhHcCCCce------------EcccCCCcCc-HHHHHHHHHHccC
Confidence            45667777  888888 9999999984 88888887    2222            4677888776 4788999999887


Q ss_pred             CCC
Q 018586          104 SAP  106 (353)
Q Consensus       104 ~k~  106 (353)
                      ++.
T Consensus        68 ~~~   70 (75)
T 2d9k_A           68 EGS   70 (75)
T ss_dssp             BSS
T ss_pred             CcC
Confidence            643

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.42  E-value=6.6e-05  Score=44.52  Aligned_cols=26  Identities=23%  Similarity=0.422  Sum_probs=23.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+.|++.|...+.|..|+++|++++
T Consensus        11 ~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A           11 TCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             ECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            58999999999999999999998764

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.41  E-value=3.5e-05  Score=42.31  Aligned_cols=25  Identities=28%  Similarity=0.522  Sum_probs=21.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      .|+.|++.|.+.+.|..|+++|+++
T Consensus         3 ~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            3 KCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             cCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            5889999999999999999999763

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.38  E-value=7.8e-05  Score=44.08  Aligned_cols=26  Identities=15%  Similarity=0.147  Sum_probs=23.4

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+.|++.|...+.|..|+++|++++
T Consensus        11 ~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A           11 KCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHHccCCC
Confidence            58899999999999999999998764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.36  E-value=5.8e-05  Score=43.09  Aligned_cols=26  Identities=23%  Similarity=0.429  Sum_probs=23.0

Q ss_pred             ccc--cccccccCchhHHHHHHHhcCCC
Q 018586           80 GCN--LCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~--~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+  .||++|...+.|..|+++|++++
T Consensus         4 ~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            4 MCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             BCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            465  89999999999999999998864

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.44  E-value=3.1e-05  Score=43.69  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=23.3

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+.|+++|.+.+.|..|+++|++++
T Consensus         5 ~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            5 VCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            58999999999999999999998764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.32  E-value=9.5e-05  Score=43.78  Aligned_cols=26  Identities=31%  Similarity=0.393  Sum_probs=23.2

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+.|++.|...+.|..|+++|++++
T Consensus        11 ~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A           11 KCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             ECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             cCCCCCchhCCHHHHHHHHHHhccCC
Confidence            58899999999999999999998764

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.31  E-value=0.00014  Score=40.42  Aligned_cols=27  Identities=30%  Similarity=0.508  Sum_probs=24.5

Q ss_pred             Cceeec--cccccccChHHHHHHHhhhcCCC
Q 018586           13 ARHKCV--ACYKQFKRKDHLIEHMKISYHSV   41 (353)
Q Consensus        13 k~~~C~--~C~k~f~~~~~l~~H~~~~~h~~   41 (353)
                      +||.|+  .|++.|...+.|..|+++  |++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~--H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKI--HTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGG--GTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHH--hCC
Confidence            589999  999999999999999998  753

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.30  E-value=9.4e-05  Score=44.12  Aligned_cols=26  Identities=27%  Similarity=0.258  Sum_probs=23.3

Q ss_pred             ccccccccccCc-hhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSP-SSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~-s~L~~H~~~h~~~k  105 (353)
                      .|+.|++.|... +.|..|+++|++++
T Consensus        11 ~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A           11 KCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             ECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             ECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            588999999999 99999999998764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.30  E-value=6.9e-05  Score=45.06  Aligned_cols=24  Identities=33%  Similarity=0.445  Sum_probs=19.1

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      .|+.|||+|.+.++|..|+       ||.|.
T Consensus        10 ~C~~CgK~F~~~s~L~~H~-------py~C~   33 (36)
T 1fv5_A           10 MCLPCGIAFSSPSTLEAHQ-------AYYCS   33 (36)
T ss_dssp             EETTTTEECSCHHHHHHHH-------HHTST
T ss_pred             ECCCCCCccCCHhHccCcC-------CeECc
Confidence            5888888888888888887       66665

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.30  E-value=6.4e-05  Score=44.59  Aligned_cols=26  Identities=15%  Similarity=0.256  Sum_probs=22.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+.|++.|...+.|..|+++|++++
T Consensus        11 ~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A           11 DCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             ECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            58889999999999999999998764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.29  E-value=9.5e-05  Score=42.44  Aligned_cols=26  Identities=31%  Similarity=0.543  Sum_probs=23.2

Q ss_pred             ccc--cccccccCchhHHHHHHHhcCCC
Q 018586           80 GCN--LCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~--~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+  .|+++|...+.|..|+++|++++
T Consensus         5 ~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            5 SCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             cCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            477  89999999999999999998764

>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A

Probab=97.27  E-value=0.001  Score=68.28  Aligned_cols=146  Identities=14%  Similarity=0.127  Sum_probs=91.7

Q ss_pred             CCCceeeccCcccccc-CC-CCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHH
Q 018586          133 RGPKAVAMDCEMVGGG-SN-GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~-~~-~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~  210 (353)
                      +..+++++|+|++|.. ++ ....+ ..++.++..+..++.  .             ..|..+.+...++..+++..|.+
T Consensus       133 ~~l~ilsfDIEt~~~~~p~~~~d~I-i~Is~~~~~~~~~~t--~-------------~~i~~~~v~~~~~E~~LL~~f~~  196 (775)
T 1qht_A          133 EELTMLAFAIATLYHEGEEFGTGPI-LMISYADGSEARVIT--W-------------KKIDLPYVDVVSTEKEMIKRFLR  196 (775)
T ss_dssp             CCCCEEEEEEEECCCTTCCTTCSCE-EEEEEECSSCEEEEE--S-------------SCCCCSSEEECSCHHHHHHHHHH
T ss_pred             CCcEEEEEEEEEcCCCCCCCCCCcE-EEEEEEecCCCeeEe--e-------------ccccccceEEcCCHHHHHHHHHH
Confidence            4678999999999832 12 12233 355555554443221  0             11222345667888899999999


Q ss_pred             HHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-----CcCC------------------------CCceeecccccC
Q 018586          211 ILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYP------------------------DHMLRDTAKYRP  260 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~------------------------~~~~~Dt~~l~~  260 (353)
                      ++...++           .+|||||. .||+.+|.     ++.+                        ....+|+..+.+
T Consensus       197 ~i~~~dP-----------DiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k  265 (775)
T 1qht_A          197 VVREKDP-----------DVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIR  265 (775)
T ss_dssp             HHHHHCC-----------SEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHH
T ss_pred             HHHhcCC-----------CEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHH
Confidence            9955432           49999995 67999887     1111                        123456666554


Q ss_pred             CcccCCCCCcHHHHHHHHhCCcCCCCC------------------CChHHHHHHHHHHHHHHHh
Q 018586          261 LMKTNLVSHSLKYLTRTYLGYDIQSGV------------------HDPYEDCVSVMRLYKRFRR  306 (353)
Q Consensus       261 ~~~~~~~~~~L~~l~~~~~~~~~~~~~------------------H~Al~Da~~t~~l~~~~~~  306 (353)
                      .. ....+|+|+.+++.+||..-..-.                  .-.+.||..|..|+..+..
T Consensus       266 ~~-~~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~  328 (775)
T 1qht_A          266 RT-INLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP  328 (775)
T ss_dssp             HH-SCCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hh-cCcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            43 245689999999988898632211                  1125699999999876553

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.25  E-value=3.3e-05  Score=56.81  Aligned_cols=35  Identities=14%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCCCCcccCCc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFEKTLS  114 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~~~c~~~~~  114 (353)
                      .|+.|++.|...+.|..|+++|++++||.|..+..
T Consensus        27 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~   61 (88)
T 1x6f_A           27 QCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER   61 (88)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred             cCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh
Confidence            58899999999999999999999999999988743

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.23  E-value=0.00014  Score=43.23  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             ccccccccccCchhHHHHHHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      .|+.|++.|...+.|..|+++|+++
T Consensus        13 ~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A           13 QCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             cCCCCCcccCcHHHHHHHHHHhccC
Confidence            4778888888888888888888764

>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9

Probab=97.23  E-value=0.00099  Score=59.59  Aligned_cols=79  Identities=13%  Similarity=0.062  Sum_probs=59.9

Q ss_pred             CCcEEEecccHHHHHHhc-----Cc---------------CCCCceeecccccCCcccC-------------CCCCcHHH
Q 018586          227 KARLLVGHGLEHDLDSLR-----MN---------------YPDHMLRDTAKYRPLMKTN-------------LVSHSLKY  273 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~-----~~---------------~~~~~~~Dt~~l~~~~~~~-------------~~~~~L~~  273 (353)
                      ++..+|.++..+|+.+|-     ..               +|.  +.|+..+.+.....             ..+.+|+.
T Consensus       154 ~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~--iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~  231 (289)
T 1uoc_A          154 DSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPN--FYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTT  231 (289)
T ss_dssp             TTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSS--EEEHHHHHHHHTTTCC-------------CCSHHH
T ss_pred             CCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCcc--ceeHHHHHHHHHhccCcccccccccccccCCCHHH
Confidence            557899989999999876     11               343  77887766543221             23568999


Q ss_pred             HHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhch
Q 018586          274 LTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       274 l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                      +|+.+ |++..+..|.|-.|+..|+.+|.++++..
T Consensus       232 lA~~L-~v~r~g~~HqAGsDSllT~~~F~kl~~~~  265 (289)
T 1uoc_A          232 LADEL-GLPRFSIFTTTGGQSLLMLLSFCQLSKLS  265 (289)
T ss_dssp             HHHHT-TCCCCGGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHc-CCCccCcccccHHHHHHHHHHHHHHHHHH
Confidence            99998 98855559999999999999999999775

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.22  E-value=8.1e-05  Score=41.87  Aligned_cols=26  Identities=31%  Similarity=0.569  Sum_probs=22.9

Q ss_pred             ccccccccccCchhHHHH-HHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKH-KEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H-~~~h~~~k  105 (353)
                      .|+.|++.|.+.+.|..| +++|++++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            4 ACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             BCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcccCcccCChHHHHHHHHHHccCCC
Confidence            588999999999999999 78898764

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.22  E-value=0.00012  Score=40.14  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=21.0

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|+.||++|.+.+.|..|+++|+
T Consensus         5 ~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            5 SCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cCCCcChhhCCHHHHHHHHHHcc
Confidence            58999999999999999999884

>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A

Probab=97.22  E-value=0.00017  Score=61.69  Aligned_cols=89  Identities=17%  Similarity=0.181  Sum_probs=67.3

Q ss_pred             HHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc--CcCCCCceeecccccCCcccC--CCCCcHHHHHHHHhCCc
Q 018586          207 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTN--LVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~--~~~~~L~~l~~~~~~~~  282 (353)
                      .|.+++            .+.+.+.|||++.+|+..|.  .+.....++|+..++....+.  ..+.+|+.|++.+||+.
T Consensus        99 ~L~~lL------------~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~  166 (206)
T 1vk0_A           99 DLYRFF------------ASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSD  166 (206)
T ss_dssp             HHHHHH------------TCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCC
T ss_pred             HHHHHh------------cCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCc
Confidence            467788            34667899999999999998  333335689998776544332  46789999999999999


Q ss_pred             C-CC--------------CCCChHHHHHHHHHHHHHHHhc
Q 018586          283 I-QS--------------GVHDPYEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       283 ~-~~--------------~~H~Al~Da~~t~~l~~~~~~~  307 (353)
                      + ..              .-+-|..||++..+||.++.++
T Consensus       167 lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~~  206 (206)
T 1vk0_A          167 LGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE  206 (206)
T ss_dssp             CHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8 21              1245788999999999998753

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.13  E-value=0.0001  Score=40.74  Aligned_cols=24  Identities=17%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             ccccccccccCchhHHHHHHHhcC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~  103 (353)
                      .|+.|+++|...+.|..|+++|++
T Consensus         5 ~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            5 SCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             ECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCCCCCcccCCHHHHHHHHHhcCC
Confidence            588999999999999999998864

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.12  E-value=0.0003  Score=48.56  Aligned_cols=27  Identities=22%  Similarity=0.568  Sum_probs=24.2

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~  106 (353)
                      .|..|+++|.+.+.|..|+++|++++.
T Consensus        15 ~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A           15 PCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            588899999999999999999998654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.08  E-value=0.00011  Score=40.53  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.5

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|+.||++|.+.+.|..|+++|+
T Consensus         5 ~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            5 RCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             EETTTTEEESCHHHHHHHHTTCC
T ss_pred             CCCCCCcccCCHHHHHHHHHhcC
Confidence            58999999999999999998874

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.07  E-value=0.00021  Score=42.68  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=22.9

Q ss_pred             ccc--cccccccCchhHHHHHHHhcCCC
Q 018586           80 GCN--LCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~--~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+  .|+++|...+.|..|+++|++++
T Consensus        10 ~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A           10 ICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             ECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            477  59999999999999999998864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.11  E-value=9.2e-05  Score=40.27  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|+.||++|.+.+.|..|+++|+
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            4 VCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58899999999999999999874

>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...

Probab=96.99  E-value=0.00043  Score=68.61  Aligned_cols=94  Identities=6%  Similarity=0.010  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc---CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhC
Q 018586          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR---MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLG  280 (353)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~  280 (353)
                      +.+.|..++            .+.+...|+||+.+|+.+|.   +..+ ..++||+..+..+.|...+++|++|++.|+|
T Consensus        69 ~l~~Lk~lL------------ed~~i~KV~hn~K~Dl~vL~~~Gi~l~-g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg  135 (592)
T 3pv8_A           69 ADPQFVAWL------------GDETKKKSMFDSKRAAVALKWKGIELC-GVSFDLLLAAYLLDPAQGVDDVAAAAKMKQY  135 (592)
T ss_dssp             TCHHHHHHH------------TCTTSEEEESSHHHHHHHHHHTTCCCC-CEEEEHHHHHHHHCGGGCCCSHHHHHGGGTC
T ss_pred             HHHHHHHHH------------hCCCCeEEEechHHHHHHHHHcCCCCC-CccchHHHHHHHcCCCCCCCCHHHHHHHHcC
Confidence            446688888            33557899999999999996   3332 3578999999999888788999999999998


Q ss_pred             CcCCCC------------------CCChHHHHHHHHHHHHHHHhchhh
Q 018586          281 YDIQSG------------------VHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       281 ~~~~~~------------------~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      ..+...                  ...|.+||.++.+|+..+..+.++
T Consensus       136 ~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e  183 (592)
T 3pv8_A          136 EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRR  183 (592)
T ss_dssp             CSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            775311                  134678999999999999877654

>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5

Probab=96.86  E-value=0.0024  Score=59.84  Aligned_cols=83  Identities=12%  Similarity=0.102  Sum_probs=63.7

Q ss_pred             CCcEEEecccHHHHHHhc--CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCC---------------CC
Q 018586          227 KARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV---------------HD  289 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~---------------H~  289 (353)
                      .+.+.|+||+.+|+.+|.  .+.....++||+..+..+.+ ..+++|+.|++.|+|..+..+.               .-
T Consensus        73 ~~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~-~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~Y  151 (375)
T 1yt3_A           73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR-PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEY  151 (375)
T ss_dssp             TTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTC-CTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHH
T ss_pred             CCceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCC-CCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHH
Confidence            446789999999999995  34333468999987776655 4589999999999888765431               11


Q ss_pred             hHHHHHHHHHHHHHHHhchhh
Q 018586          290 PYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       290 Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      |..||..+..||..+..+..+
T Consensus       152 Aa~Da~~l~~L~~~L~~~L~~  172 (375)
T 1yt3_A          152 AAADVWYLLPITAKLMVETEA  172 (375)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999877654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.82  E-value=0.00032  Score=38.82  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             ccc--cccccccCchhHHHHHHHhcC
Q 018586           80 GCN--LCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        80 ~C~--~C~k~F~~~s~L~~H~~~h~~  103 (353)
                      .|+  .|+++|...+.|..|+++|++
T Consensus         4 ~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            4 VCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             EECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            588  999999999999999999864

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.81  E-value=0.00054  Score=43.39  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=22.9

Q ss_pred             ccc--cccccccCchhHHHHHHHhcCCC
Q 018586           80 GCN--LCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~--~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|+  .|+++|...+.|..|+++|++++
T Consensus        20 ~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           20 ECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             ECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            474  79999999999999999999874

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.79  E-value=0.0005  Score=40.93  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=21.6

Q ss_pred             ccccccccccCchhHHHH-HHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKH-KEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H-~~~h~~~  104 (353)
                      .|+.|+++|...+.|..| +++|+++
T Consensus        11 ~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A           11 YCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             ECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHHccCc
Confidence            588899999999999999 8888764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=96.78  E-value=0.00037  Score=44.46  Aligned_cols=27  Identities=15%  Similarity=0.372  Sum_probs=22.4

Q ss_pred             ccccccccccCchhHHHHHH-HhcCCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKE-ACSLSAP  106 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~-~h~~~k~  106 (353)
                      .|..|+++|...+.|..|++ +|+++.+
T Consensus         9 ~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            9 ACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             ECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            58899999999999999999 8987655

>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1

Probab=96.69  E-value=0.0092  Score=61.73  Aligned_cols=151  Identities=16%  Similarity=0.181  Sum_probs=88.1

Q ss_pred             cCCCceeeccCcc-ccc-c--CCCC---ccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHH
Q 018586          132 CRGPKAVAMDCEM-VGG-G--SNGT---LDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEV  204 (353)
Q Consensus       132 ~~~~~~~~~D~Et-tg~-~--~~~~---~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v  204 (353)
                      .+..++++||+|+ ++. +  ++..   ..+ ..+++++.+|...+ .++++... +.....   |....+...++..++
T Consensus       187 ~p~l~ilsfDIEt~s~~~g~fP~~~~~~d~I-i~Is~~~~~g~~~~-~~~~~~~~-~~~~~~---i~~~~v~~~~~E~~L  260 (847)
T 1s5j_A          187 IPKIKRVAIDIEVYTPVKGRIPDSQKAEFPI-ISIALAGSDGLKKV-LVLNRNDV-NEGSVK---LDGISVERFNTEYEL  260 (847)
T ss_dssp             CCCCCEEEEEEEECCSSSSCCCCTTTCCSCE-EEEEEEETTSCEEE-EEECSSCC-CCCCEE---ETTEEEEEESSHHHH
T ss_pred             CCCceEEEEEEEeCcCCCCCCCCccccCCcE-EEEEEEccCCCcEE-EEEeCCcc-cccccC---CCCCeEEEeCCHHHH
Confidence            5677899999999 742 1  2221   233 35566656664321 22333211 110111   222335556789999


Q ss_pred             HHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-----CcC-----CC------------CceeecccccCC
Q 018586          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNY-----PD------------HMLRDTAKYRPL  261 (353)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~-----~~------------~~~~Dt~~l~~~  261 (353)
                      +..|.+++.+            - .+|||||. .||+.+|.     ++.     |.            ...+|...+...
T Consensus       261 L~~f~~~i~~------------~-diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~  327 (847)
T 1s5j_A          261 LGRFFDILLE------------Y-PIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFN  327 (847)
T ss_dssp             HHHHHHHHTT------------C-SEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTS
T ss_pred             HHHHHHHhcc------------C-CEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhh
Confidence            9999999932            2 38999995 68999987     222     11            223455544332


Q ss_pred             -------cccCCCCCcHHHHHHHHhCCcCCCCC-------------CChHHHHHHHHHHHH
Q 018586          262 -------MKTNLVSHSLKYLTRTYLGYDIQSGV-------------HDPYEDCVSVMRLYK  302 (353)
Q Consensus       262 -------~~~~~~~~~L~~l~~~~~~~~~~~~~-------------H~Al~Da~~t~~l~~  302 (353)
                             +.....+++|+.+++.+||.. ...-             .-.+.||..|..|+.
T Consensus       328 ~~~~~y~f~~kl~sysL~~Va~~~Lg~~-K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~~  387 (847)
T 1s5j_A          328 KAVRNYAFEGKYNEYNLDAVAKALLGTS-KVKVDTLISFLDVEKLIEYNFRDAEITLQLTT  387 (847)
T ss_dssp             HHHHHHTSTTCCSSCSHHHHHHHHHCCC-CC--SSCTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             hhhhhhccccccccccHHHHHHHHhCCC-CcchhHhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence                   112346899999999998875 2211             113569999999953

>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...

Probab=96.66  E-value=0.0084  Score=61.97  Aligned_cols=159  Identities=14%  Similarity=0.109  Sum_probs=99.0

Q ss_pred             cCCCceeeccCcccccc--C--C-CCccceeEEeeecCCCCeE--EeeeccCCCCcccccc---------ccCCCCHhhh
Q 018586          132 CRGPKAVAMDCEMVGGG--S--N-GTLDLCARVCLVDEDENVI--FHTYVQPQLPVTNYRY---------EVTGLTEEDI  195 (353)
Q Consensus       132 ~~~~~~~~~D~Ettg~~--~--~-~~~~il~~v~ivd~~g~~~--~~~lv~P~~~i~~~~~---------~~~GIt~e~l  195 (353)
                      .+..+.+.+|+|++..+  +  . ...+| ..|++.|..+...  |+.+-.|...+.++..         .-..+..+.+
T Consensus       105 ~~~ir~~~~DIEv~~~~~fPd~~~~~~~I-i~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (903)
T 3qex_A          105 HTKIRVANFDIEVTSPDGFPEPSQAKHPI-DAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEII  183 (903)
T ss_dssp             GGGSCEEEEEEECCCTTSSCCTTTCCSCC-CEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHH
T ss_pred             cccccEEEEeEEeCCCCCCCCcccCCCCE-EEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccC
Confidence            35678999999998632  2  1 23445 5888888877764  3344444333333221         1122344433


Q ss_pred             cC-----CCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-----C-c------C----------
Q 018586          196 KN-----AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----M-N------Y----------  247 (353)
Q Consensus       196 ~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~-~------~----------  247 (353)
                      .+     .++-.+++..|.++|...++           .+|+|||+ .||+.+|.     + +      +          
T Consensus       184 ~~v~v~~f~sE~eLL~~F~~~I~~~DP-----------DIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~  252 (903)
T 3qex_A          184 DKIIYMPFDNEKELLMEYLNFWQQKTP-----------VILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKV  252 (903)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHHHHTCC-----------SEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHHhCC-----------CEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccc
Confidence            32     36788999999999965543           69999995 57988875     1 1      0          


Q ss_pred             -------------CCCceeecccccCCc-ccCCCCCcHHHHHHHHhCCcCCCCCCC----------------hHHHHHHH
Q 018586          248 -------------PDHMLRDTAKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGVHD----------------PYEDCVSV  297 (353)
Q Consensus       248 -------------~~~~~~Dt~~l~~~~-~~~~~~~~L~~l~~~~~~~~~~~~~H~----------------Al~Da~~t  297 (353)
                                   +...++|+..+.+.. .....+|+|+.+|+.+||..- ..-+.                .+.||..+
T Consensus       253 ~~~~~G~~~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K-~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt  331 (903)
T 3qex_A          253 IENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGK-LKYDGPISKLRESNHQRYISYNIIAVYRV  331 (903)
T ss_dssp             EEETTEEEEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCC-CCCSSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcCCceeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCc-cccHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence                         011144555555432 235668999999999998873 22221                15699999


Q ss_pred             HHHHHH
Q 018586          298 MRLYKR  303 (353)
Q Consensus       298 ~~l~~~  303 (353)
                      ++|+.+
T Consensus       332 ~~L~~K  337 (903)
T 3qex_A          332 LQIDAK  337 (903)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999987

>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.0055  Score=63.82  Aligned_cols=150  Identities=14%  Similarity=0.172  Sum_probs=88.4

Q ss_pred             cCCCceeeccCcccccc---CC-CCccceeEEe-eecCCCCe--EEe-ee-ccCCCCccccccccCCCCHhhhcCCCChH
Q 018586          132 CRGPKAVAMDCEMVGGG---SN-GTLDLCARVC-LVDEDENV--IFH-TY-VQPQLPVTNYRYEVTGLTEEDIKNAMPLK  202 (353)
Q Consensus       132 ~~~~~~~~~D~Ettg~~---~~-~~~~il~~v~-ivd~~g~~--~~~-~l-v~P~~~i~~~~~~~~GIt~e~l~~~~~~~  202 (353)
                      .++.+++++|+|+.+.+   ++ ...+| ..++ ++...|..  ... .+ +.+..          .+....|...++..
T Consensus       246 ~PplrilSfDIEt~~~~g~fP~~~~D~I-i~IS~~v~~~g~~~~~~r~~f~l~~~~----------~~~~~~V~~~~sE~  314 (919)
T 3iay_A          246 TAPLRIMSFDIECAGRIGVFPEPEYDPV-IQIANVVSIAGAKKPFIRNVFTLNTCS----------PITGSMIFSHATEE  314 (919)
T ss_dssp             CCCCEEEEEEEEECCCTTSCCCTTTCCE-EEEEEEEEETTCSSCSEEEEEEESCCC----------CBTTBEEEEESSHH
T ss_pred             CCCceEEEEEEEECCCCCCCCCCCCCcE-EEEEEEEecCCCcccceeEEEEecCCC----------CCCCCeEEECCCHH
Confidence            46778999999998531   22 22233 2333 33334432  111 11 11111          12223456677889


Q ss_pred             HHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-----CcCCC---------------------------
Q 018586          203 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYPD---------------------------  249 (353)
Q Consensus       203 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~~---------------------------  249 (353)
                      +++..|.++|...++           .+|||||+ .||+.+|.     +..+.                           
T Consensus       315 eLL~~F~~~i~~~DP-----------DIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~  383 (919)
T 3iay_A          315 EMLSNWRNFIIKVDP-----------DVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTR  383 (919)
T ss_dssp             HHHHHHHHHHHHHCC-----------SEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEE
T ss_pred             HHHHHHHHHHHHhCC-----------CEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCcccccccccccccccccc
Confidence            999999999965433           69999997 68999986     11110                           


Q ss_pred             ---------CceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCCC---------C----------hHHHHHHHHHHH
Q 018586          250 ---------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVH---------D----------PYEDCVSVMRLY  301 (353)
Q Consensus       250 ---------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H---------~----------Al~Da~~t~~l~  301 (353)
                               ..++|+..+.+.. ....+|+|+.++..+||.....-.+         +          .+.||..+++|+
T Consensus       384 ~~~~~~i~GR~~lDl~~~~k~~-~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~  462 (919)
T 3iay_A          384 ETKNVNIDGRLQLDLLQFIQRE-YKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLM  462 (919)
T ss_dssp             EECCBCCTTCEEEEHHHHHHHH-CCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeEEcCeEEEEhHHHHHhh-cCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence                     1234554444332 3567999999999999976321122         1          156999999998


Q ss_pred             HHH
Q 018586          302 KRF  304 (353)
Q Consensus       302 ~~~  304 (353)
                      .++
T Consensus       463 ~kl  465 (919)
T 3iay_A          463 EKL  465 (919)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            876

>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A

Probab=96.65  E-value=0.0064  Score=57.85  Aligned_cols=82  Identities=16%  Similarity=0.144  Sum_probs=59.6

Q ss_pred             CCcEEEecccHHHHHHhc-------------------CcCCCCceeecccccCCcc--cCCCCCcHHHHHHHHhCCcC--
Q 018586          227 KARLLVGHGLEHDLDSLR-------------------MNYPDHMLRDTAKYRPLMK--TNLVSHSLKYLTRTYLGYDI--  283 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~-------------------~~~~~~~~~Dt~~l~~~~~--~~~~~~~L~~l~~~~~~~~~--  283 (353)
                      .+.+|||||.-.|+-++-                   --+|.  ++||..++....  ......+|..|.+.+...+.  
T Consensus       280 s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~--i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~  357 (430)
T 2a1r_A          280 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPR--LLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNP  357 (430)
T ss_dssp             HCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSS--EEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCC
T ss_pred             CCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCc--eeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCC
Confidence            457999999999999776                   11565  899987774431  22345789999887733211  


Q ss_pred             ---------------CCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          284 ---------------QSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       284 ---------------~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                                     ....|.|-.||.+|+.+|.++...+..
T Consensus       358 p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~~  399 (430)
T 2a1r_A          358 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGS  399 (430)
T ss_dssp             CCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred             CeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHhh
Confidence                           122699999999999999999987644

>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}

Probab=96.64  E-value=0.0035  Score=61.01  Aligned_cols=81  Identities=19%  Similarity=0.153  Sum_probs=60.0

Q ss_pred             CCcEEEecccHHHHHHhc-------------------CcCCCCceeecccccCC--cccCCCCCcHHHHHHHHhC----C
Q 018586          227 KARLLVGHGLEHDLDSLR-------------------MNYPDHMLRDTAKYRPL--MKTNLVSHSLKYLTRTYLG----Y  281 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~-------------------~~~~~~~~~Dt~~l~~~--~~~~~~~~~L~~l~~~~~~----~  281 (353)
                      .+.+|||||.-.|+-+|-                   .-+|.  ++||..++..  +.......+|..|.+.+-.    .
T Consensus       275 ~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~--i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~  352 (507)
T 3d45_A          275 SGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPR--LLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDP  352 (507)
T ss_dssp             HCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSC--EEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCC
T ss_pred             CCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCc--eeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCC
Confidence            457999999999999987                   11554  8999988865  2223346799999998831    1


Q ss_pred             cC-------------CCCCCChHHHHHHHHHHHHHHHhchh
Q 018586          282 DI-------------QSGVHDPYEDCVSVMRLYKRFRRQDH  309 (353)
Q Consensus       282 ~~-------------~~~~H~Al~Da~~t~~l~~~~~~~~~  309 (353)
                      +-             .+..|.|-.||.+|+.+|.++.....
T Consensus       353 p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~  393 (507)
T 3d45_A          353 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG  393 (507)
T ss_dssp             CCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            10             11279999999999999999987654

>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*

Probab=96.51  E-value=0.0052  Score=58.22  Aligned_cols=82  Identities=20%  Similarity=0.205  Sum_probs=62.8

Q ss_pred             CCcEEEecccHHHHHHhc--CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCC---------------CC
Q 018586          227 KARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV---------------HD  289 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~---------------H~  289 (353)
                      .+.+.|+||+.+|+.+|.  .+.....++||+..+..+.+.  +++|+.|++.|+|..+..+.               .-
T Consensus       158 ~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~--~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~Y  235 (410)
T 2hbj_A          158 PSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP--RHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAA  235 (410)
T ss_dssp             TTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCS--CCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHH
T ss_pred             CCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCC--ccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHH
Confidence            456789999999999996  343333489999877666543  69999999999888765431               11


Q ss_pred             hHHHHHHHHHHHHHHHhchhh
Q 018586          290 PYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       290 Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      |..||.++..||..+..+..+
T Consensus       236 Aa~Da~~ll~L~~~L~~~L~~  256 (410)
T 2hbj_A          236 ARADTHFLLNIYDQLRNKLIE  256 (410)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            568999999999999888654

>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*

Probab=96.36  E-value=0.028  Score=60.02  Aligned_cols=100  Identities=13%  Similarity=0.045  Sum_probs=67.0

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc--------CcCCC----------------
Q 018586          195 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR--------MNYPD----------------  249 (353)
Q Consensus       195 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~--------~~~~~----------------  249 (353)
                      |....+-.+++..|.++|...++           .+|||||+ .||+.+|.        +..+.                
T Consensus       395 V~~~~sE~eLL~~F~~~I~~~DP-----------DIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~  463 (1193)
T 2gv9_A          395 VLEFDSEFEMLLAFMTLVKQYGP-----------EFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIG  463 (1193)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHCC-----------SEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC--
T ss_pred             EEecCCHHHHHHHHHHHHHhcCC-----------CEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccc
Confidence            44557788999999999965543           59999996 67999876        11110                


Q ss_pred             --------------CceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCCCC-------------------hHHHHHH
Q 018586          250 --------------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHD-------------------PYEDCVS  296 (353)
Q Consensus       250 --------------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~-------------------Al~Da~~  296 (353)
                                    ..++|+..+.+... ...+|+|+.+++.+||..-..-.+.                   .+.||..
T Consensus       464 ~~~f~~~~~~~i~GRv~lDl~~~~~~~~-kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~l  542 (1193)
T 2gv9_A          464 QSHFQKRSKIKVNGMVNIDMYGIITDKI-KLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLL  542 (1193)
T ss_dssp             --------CEEETTBEEEEHHHHHTTTC-CCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccceEEEcCeEeehHHHHHHHHh-ccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence                          12456555443322 4568999999999988763211111                   2458889


Q ss_pred             HHHHHHHHHh
Q 018586          297 VMRLYKRFRR  306 (353)
Q Consensus       297 t~~l~~~~~~  306 (353)
                      +++||.+++.
T Consensus       543 t~~L~~kl~~  552 (1193)
T 2gv9_A          543 VGQLFFKFLP  552 (1193)
T ss_dssp             HHHHHHHHCH
T ss_pred             HHHHHHHHHH
Confidence            9999888743

>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*

Probab=96.10  E-value=0.029  Score=57.35  Aligned_cols=146  Identities=16%  Similarity=0.252  Sum_probs=86.6

Q ss_pred             ccCCCceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHH
Q 018586          131 TCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~  210 (353)
                      ..+.-++++||+|+.+.  ..   + -.+.+.+...+.++ .+-.+..+.        .+..-.|.-.++-.+++..|.+
T Consensus       149 ~~p~lrilsfDIE~~~~--g~---i-~~I~~~~~~~~~v~-~l~~~~~~~--------~~~~~~V~~f~~E~~lL~~f~~  213 (786)
T 3k59_A          149 YRPPLKWVSIDIETTRH--GE---L-YCIGLEGCGQRIVY-MLGPENGDA--------SSLDFELEYVASRPQLLEKLNA  213 (786)
T ss_dssp             CCCCCCEEEEEEEECTT--SC---E-EEEEEEETTEEEEE-EESSCCSCC--------TTCSSEEEEESSHHHHHHHHHH
T ss_pred             CCCCCeEEEEEEEEcCC--CC---E-EEEEecCCCCCeEE-EEecCCCCC--------CCCCceEEEeCCHHHHHHHHHH
Confidence            46788999999999953  22   2 23334322211121 111111100        1111234445678899999999


Q ss_pred             HHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-----CcCC---------------------------CCceeeccc
Q 018586          211 ILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYP---------------------------DHMLRDTAK  257 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~---------------------------~~~~~Dt~~  257 (353)
                      ++...++           .+|||||+ .||+.+|.     ...+                           ...++|+..
T Consensus       214 ~i~~~dP-----------Dii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~  282 (786)
T 3k59_A          214 WFANYDP-----------DVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIE  282 (786)
T ss_dssp             HHHHHCC-----------SEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHH
T ss_pred             HHHHcCC-----------CEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHH
Confidence            9965543           49999996 47999986     1111                           012345544


Q ss_pred             ccCCcccCCCCCcHHHHHHHHhCCcCCCCCCCh----------------------HHHHHHHHHHHHHH
Q 018586          258 YRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDP----------------------YEDCVSVMRLYKRF  304 (353)
Q Consensus       258 l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~A----------------------l~Da~~t~~l~~~~  304 (353)
                      +.+.......+|+|+++|+.+||.. .. .|+.                      +.||..+++||.++
T Consensus       283 ~lk~~~~~l~SysL~~Va~~~Lg~~-K~-~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl  349 (786)
T 3k59_A          283 ALKSAFWNFSSFSLETVAQELLGEG-KS-IDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT  349 (786)
T ss_dssp             HHHHTTCCCSCCSHHHHHHHHHCCC-CC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCCCCHHHHHHHHhCCC-Cc-ccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            4432223567999999999998876 22 2322                      57999999999885

>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=95.84  E-value=0.02  Score=54.73  Aligned_cols=90  Identities=16%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             HHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcC
Q 018586          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDI  283 (353)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~  283 (353)
                      ...|.+++              .+...|+|++.+|+.+|. .+.....++||+..+..+.+ . +++|..|++.|+|...
T Consensus        84 l~~L~~lL--------------~d~~KV~h~~k~Dl~~L~~~gi~~~~~fDt~lAa~lL~~-~-~~gL~~L~~~~lg~~~  147 (440)
T 3cym_A           84 WNDFNRAV--------------GDAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGL-K-RFGLAAVTEHFLGLTL  147 (440)
T ss_dssp             HHHHHHHH--------------TTCEEEESSHHHHHHHHHHHTCCCCEEEEHHHHHHHTTC-S-SCSHHHHHHHHHCEEC
T ss_pred             HHHHHHHH--------------CCCCEEEEcCHHHHHHHHHcCCcCCceehHHHHHHHhCC-C-CCCHHHHHHHHhCCCc
Confidence            35677888              445789999999999986 12212368999765555554 3 8999999999988765


Q ss_pred             CCCC---------------CChHHHHHHHHHHHHHHHhchhh
Q 018586          284 QSGV---------------HDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       284 ~~~~---------------H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      ..+.               .-|..||..+..||..+..+...
T Consensus       148 ~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~  189 (440)
T 3cym_A          148 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKR  189 (440)
T ss_dssp             CCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4431               12678999999999998877543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.41  E-value=0.0039  Score=48.30  Aligned_cols=31  Identities=23%  Similarity=0.487  Sum_probs=28.6

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhh
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      ...|+|++||.|..|++.|.+.+.|..|++.
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            5678999999999999999999999999976

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=92.05  E-value=0.15  Score=34.48  Aligned_cols=25  Identities=16%  Similarity=0.135  Sum_probs=19.7

Q ss_pred             eccccccccChHHHHHHHh-hhcCCCCC
Q 018586           17 CVACYKQFKRKDHLIEHMK-ISYHSVHQ   43 (353)
Q Consensus        17 C~~C~k~f~~~~~l~~H~~-~~~h~~~~   43 (353)
                      +..|++.|.....|..|+. .  |.+.+
T Consensus         6 W~~C~~~f~~~~~l~~Hv~~~--Hv~~~   31 (64)
T 1zw8_A            6 WKECPESASSLFDLQRHLLKD--HVSQD   31 (64)
T ss_dssp             CTTCCCCCSSHHHHHHHHHHH--SCCCC
T ss_pred             eCCCCCcCCCHHHHHHHHHhh--ccCcc
Confidence            4469999999999999984 6  77654

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.74  E-value=0.16  Score=31.63  Aligned_cols=24  Identities=33%  Similarity=0.591  Sum_probs=22.3

Q ss_pred             CceeeccccccccChHHHHHHHhh
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      .+|.|+.|+..|.....|+.|+..
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            689999999999999999999985

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.29  E-value=0.32  Score=30.33  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.4

Q ss_pred             ccccccccccCchhHHHHHHHh
Q 018586           80 GCNLCMNIFDSPSSLIKHKEAC  101 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h  101 (353)
                      .|+.|++.|....+|+.||+-.
T Consensus        14 ~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           14 ICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHH
T ss_pred             eCCcccccccchHHHHhhhhhc
Confidence            4899999999999999999843

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=85.22  E-value=0.79  Score=35.49  Aligned_cols=73  Identities=18%  Similarity=0.294  Sum_probs=43.2

Q ss_pred             CceeeccccccccChHHHHHHH--hhhcCCCC-CC-ccccC-------cccCCChHHHHhccCCCCCCCCCCcccccccc
Q 018586           13 ARHKCVACYKQFKRKDHLIEHM--KISYHSVH-QP-KCAVC-------QKLSKSFESLREHLTGPLSKAHCSGIFSDRGC   81 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~--~~~~h~~~-~~-~C~~C-------~~~f~~~~~l~~H~~~~~~c~~Cgk~f~~~~C   81 (353)
                      +++.|..|...|.+.+.+..|.  +.  |... +. .+ .+       ++.+...    .+...       +..-....|
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkk--H~~~v~~~~~-~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~C   96 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRK--HANKVRRYMA-INQGEDSVPAKKFKAA----PAEIS-------DGEDRSKCC   96 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHH--HHHHHHHHHH-HTTCCCCCSCCCCSCC----SSCCS-------SCCCTTTEE
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHH--HHHHHHHHhc-ccCcccCCCCCccCCC----ccccc-------cCCCCCeEc
Confidence            5789999999999999999998  34  4321 11 11 11       1111110    01100       000111249


Q ss_pred             ccccccccCchhHHHHHH
Q 018586           82 NLCMNIFDSPSSLIKHKE   99 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~   99 (353)
                      ..|++.|.+.+.+..|..
T Consensus        97 ~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           97 PVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTTTEECSSHHHHHHHHT
T ss_pred             CCCCCEeCCHHHHHHHHC
Confidence            999999999999999965

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=84.95  E-value=0.6  Score=31.38  Aligned_cols=51  Identities=24%  Similarity=0.324  Sum_probs=26.3

Q ss_pred             ccCcccCCChHHHHhcc----CCCCCCCCCCccccccccc--cccccccCchhHHHHHHHh
Q 018586           47 AVCQKLSKSFESLREHL----TGPLSKAHCSGIFSDRGCN--LCMNIFDSPSSLIKHKEAC  101 (353)
Q Consensus        47 ~~C~~~f~~~~~l~~H~----~~~~~c~~Cgk~f~~~~C~--~C~k~F~~~s~L~~H~~~h  101 (353)
                      ..|++.|.+...|..|+    .+..+    ...-....|.  .|++.+.....|..|+++.
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~----~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDF----KHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCC----CCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCccc----CCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            35777777777777776    11110    0000011343  5666666666777777654

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=82.28  E-value=0.48  Score=29.40  Aligned_cols=21  Identities=24%  Similarity=0.513  Sum_probs=14.3

Q ss_pred             CCCCCCCcccccc--------cccccccc
Q 018586           67 LSKAHCSGIFSDR--------GCNLCMNI   87 (353)
Q Consensus        67 ~~c~~Cgk~f~~~--------~C~~C~k~   87 (353)
                      |.|--||+.|+..        .|++||..
T Consensus         4 Y~C~rCg~~fs~~el~~lP~IrCpyCGyr   32 (48)
T 4ayb_P            4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYK   32 (48)
T ss_dssp             -CCCCTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred             EEeeccCCCccHHHHhhCCCcccCccCcE
Confidence            5677778777765        38888843

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=81.86  E-value=0.47  Score=36.56  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=18.5

Q ss_pred             ccccccccccCchhHHHHHHHh
Q 018586           80 GCNLCMNIFDSPSSLIKHKEAC  101 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h  101 (353)
                      .|..|++.|.+.+.|..|+++.
T Consensus        52 yC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           52 RCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             EETTTTEECSSHHHHHHHTTCH
T ss_pred             EcccCcchhCCHHHHHHHHhhh
Confidence            5888999999999999997753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	353
d1wlja_	173	c.55.3.5 (A:) Interferon-stimulated gene 20 kDa pr	7e-18
d1y97a1	228	c.55.3.5 (A:1-228) Three prime repair exonuclease	4e-05
d1w0ha_	200	c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapien	6e-05
d3b6oa1	226	c.55.3.5 (A:9-234) Three prime repair exonuclease	0.002

>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Interferon-stimulated gene 20 kDa protein, ISG20
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 7e-18
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 21/175 (12%)

Query: 138 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 197
           VAMDCEMVG          AR  LV+    V++  +++P+  +T+YR  V+G+T + +  
Sbjct: 3   VAMDCEMVGL-GPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 61

Query: 198 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 257
           A P    + +IL++L                   VGH L+HD  +L+ +   + + DT+ 
Sbjct: 62  ATPFAVARLEILQLLKGKLV--------------VGHDLKHDFQALKEDMSGYTIYDTST 107

Query: 258 YRPLMKTNLV----SHSLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYKRFRR 306
            R L +   +      SL+ L+   L   IQ+ +  H   ED  + M LY+  +R
Sbjct: 108 DRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQR 162

>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 2, TREX2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 14/161 (8%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD--KILEILNNGESTGRLMLDDGK 227
               + P+ P T    E+TGL+ E +             + L+   + ++    ++    
Sbjct: 60  LTLCMCPERPFTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNG 119

Query: 228 ARLLVGHGLEHDLDSLRMNYPDHMLR----------DTAKYRPLMKTNLVSHSLKYLTRT 277
                   L  +L  L    P   +           D A            +SL  L   
Sbjct: 120 FDYDFPL-LCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHR 178

Query: 278 YLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQN 318
           Y   +     H    D  +++ ++     +     +   + 
Sbjct: 179 YFRAEPS-AAHSAEGDVHTLLLIFLHRAAELLAWADEQARG 218

>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 200

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease ERI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 14/188 (7%)

Query: 138 VAMDCEMVG--GGSNGTLDL-----CARVCLVDEDENVIFHTYVQPQL--PVTNYRYEVT 188
             +D E     G     +          +     +    F  YV+P++   ++++   +T
Sbjct: 9   CIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLT 68

Query: 189 GLTEEDIKNAMPLKEVKDKILEILNNGESTG-RLMLDDGKARLLVGHGLEHDLDSLRMNY 247
           G+T++ +  A    +V  K+++ +   E                +   L       R+ Y
Sbjct: 69  GITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKY 128

Query: 248 PDHMLR--DTAK-YRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRF 304
           P    +  +  K Y    K       L  +    LG D     H   +D  ++ R+  R 
Sbjct: 129 PPFAKKWINIRKSYGNFYKVPRSQTKLTIMLE-KLGMDYDGRPHCGLDDSKNIARIAVRM 187

Query: 305 RRQDHQVE 312
            +   ++ 
Sbjct: 188 LQDGCELR 195

>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 1, TREX1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 17/156 (10%), Positives = 44/156 (28%), Gaps = 26/156 (16%)

Query: 170 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKAR 229
               + P    +    E+TGL++ +++     +   +               +    +  
Sbjct: 59  LSLCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLA-------ILLRAFLQRQPQPC 111

Query: 230 LLVGHGLEHDLDSL------RMNYPDHMLRDTAKY------------RPLMKTNLVSHSL 271
            LV H  +     L      R++ P  +                    P    +  S+SL
Sbjct: 112 CLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSL 171

Query: 272 KYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 307
             +          +  H    D ++++ + +   + 
Sbjct: 172 GSIYTRLYWQAP-TDSHTAEGDVLTLLSICQWKPQA 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	353
d1wlja_	173	Interferon-stimulated gene 20 kDa protein, ISG20 {	99.97
d2guia1	174	N-terminal exonuclease domain of the epsilon subun	99.91
d3b6oa1	226	Three prime repair exonuclease 1, TREX1 {Mouse (Mu	99.88
d1y97a1	228	Three prime repair exonuclease 2, TREX2 {Human (Ho	99.86
d1w0ha_	200	Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960	99.84
d2f96a1	202	Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287	99.72
d2qxfa1	467	Exonuclease I {Escherichia coli K12 (Escherichia c	99.71
d2igia1	180	Oligoribonuclease {Escherichia coli [TaxId: 562]}	99.34
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.18
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.01
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.99
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.96
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.88
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.87
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.85
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.84
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.73
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.69
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.68
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.67
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.63
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.57
d1kfsa1	195	Exonuclease domain of prokaryotic DNA polymerase {	98.57
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.55
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.54
d2d5ra1	252	CCR4-NOT transcription complex subunit 7, CAF1 {Hu	98.49
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.39
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.38
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.37
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.36
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.33
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.33
d1yt3a3	193	Ribonuclease D, catalytic domain {Escherichia coli	98.33
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.29
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.27
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.19
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.17
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.09
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.09
d2hhva1	171	Exonuclease domain of prokaryotic DNA polymerase {	98.05
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.05
d2hbka2	292	Exosome complex exonuclease RRP6 {Baker's yeast (S	98.04
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.04
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.02
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.0
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.97
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.87
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.83
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.78
d1vk0a_	206	Hypothetical protein AT5G06450 {Thale-cress (Arabi	97.76
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.76
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	97.74
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.71
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.7
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.61
d1tgoa1	347	Exonuclease domain of family B DNA polymerases {Ar	97.6
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	97.55
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.48
d1x9ma1	204	Exonuclease domain of T7 DNA polymerase {Bacteriop	97.46
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.46
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.45
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.44
d1uoca_	286	Pop2 RNase D domain {Baker's yeast (Saccharomyces	97.39
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.2
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.2
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.13
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.95
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.92
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.87
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.86
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.68
d1q8ia1	388	Exonuclease domain of family B DNA polymerases {Es	96.66
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.55
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.52
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.49
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.46
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.08
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.0
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.86
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.78
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.77
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.76
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	95.74
d1s5ja1	410	Exonuclease domain of family B DNA polymerases {Su	95.61
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.58
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.42
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.32
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.25
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.12
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	94.89
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.86
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.83
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.22
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.15
d1noya_	372	Exonuclease domain of family B DNA polymerases {Ba	94.06
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.86
d1ih7a1	375	Exonuclease domain of family B DNA polymerases {Ba	93.54
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.31
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	93.18
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	92.7
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	92.39
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.35
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	91.67
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	91.61
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	91.12
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.35
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	90.07
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	89.49
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	89.24
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	86.03
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	86.01
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.85
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	85.8
d1y0jb1	36	U-shaped transcription factor, different fingers {	85.42
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	85.14
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	84.96
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	84.15
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	83.5

>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Interferon-stimulated gene 20 kDa protein, ISG20
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-31  Score=222.76  Aligned_cols=157  Identities=33%  Similarity=0.540  Sum_probs=133.0

Q ss_pred             ceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcC
Q 018586          136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (353)
Q Consensus       136 ~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~~~  215 (353)
                      .+|++||||||+++.....+ ..+++++.+|+++|++||+|..+|+++++.+||||+++++++++|++++++|.+|+   
T Consensus         1 ~~v~iD~EttGl~~~~~~ii-~~~~iv~~~g~~i~~~~v~p~~~i~~~~~~i~GIt~e~~~~~~~~~~~~~~~~~~~---   76 (173)
T d1wlja_           1 EVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLL---   76 (173)
T ss_dssp             CEEEEEEEEEEETTTTEEEE-EEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHH---
T ss_pred             CEEEEEEEcCCCCCCCCcEE-EEEEEEEecCeEEEEEeeecccccCcceeEEecCcchhhhcCCcHHHHHHHHHhhc---
Confidence            37999999999976655444 67888899999999999999999999999999999999999999999999999999   


Q ss_pred             CCCcccccCCCCCcEEEecccHHHHHHhcCcCCCCce----eecccccCCcccCCCCCcHHHHHHHHhCCcCCC--CCCC
Q 018586          216 ESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHML----RDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS--GVHD  289 (353)
Q Consensus       216 ~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~----~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~--~~H~  289 (353)
                                 ++.+|||||+.||++||+...+...+    +|++.+++...+...+++|+.|++.|+++.++.  .+|+
T Consensus        77 -----------~~~~lv~hn~~fD~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~i~~~~~~H~  145 (173)
T d1wlja_          77 -----------KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHS  145 (173)
T ss_dssp             -----------TTSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCC
T ss_pred             -----------ccceEEeechHhHHHHHHHhhccCcccchhHHHHHHHHHhhcccCCcCHHHHHHHHhCCcccCCCCCCC
Confidence                       88899999999999999977776333    456666777777778899999999998888754  3799


Q ss_pred             hHHHHHHHHHHHHHHHhc
Q 018586          290 PYEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       290 Al~Da~~t~~l~~~~~~~  307 (353)
                      |++||++|++||+.+.+.
T Consensus       146 Al~Da~at~~l~~~~~~~  163 (173)
T d1wlja_         146 SVEDARATMELYQISQRI  163 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            999999999999776654

>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4.3e-25  Score=184.61  Aligned_cols=151  Identities=21%  Similarity=0.340  Sum_probs=126.5

Q ss_pred             ceeeccCccccccC-------CCCccceeEEeeecCCCCe---EEeeeccCCCCccccccccCCCCHhhhcCCCChHHHH
Q 018586          136 KAVAMDCEMVGGGS-------NGTLDLCARVCLVDEDENV---IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVK  205 (353)
Q Consensus       136 ~~~~~D~Ettg~~~-------~~~~~il~~v~ivd~~g~~---~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~  205 (353)
                      +++++|+||||+++       ++++|+ |.|.+.  ++.+   .|+.+|+|..+++..++++||||++++.+++++.+++
T Consensus         1 r~vv~D~ETTGl~~~~~~~~~d~IIeI-g~v~~~--~~~~~~~~~~~~v~P~~~i~~~~~~i~gIt~e~~~~~~~~~~~~   77 (174)
T d2guia1           1 RQIVLDTETTGMNQIGAHYEGHKIIEI-GAVEVV--NRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVA   77 (174)
T ss_dssp             EEEEEEEEESCCCSSSSTTTTCCEEEE-EEEEEE--TTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHHHH
T ss_pred             CEEEEEeeCCCCCcccccCCCCEEEEE-EEEEEE--CCEEeeeEEEEEeccCccchhhhhhccccchhhhhcchhHHHHH
Confidence            47899999999864       357777 666653  3333   4999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc-------CC----CCceeecccccCCcccCCCCCcHHHH
Q 018586          206 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YP----DHMLRDTAKYRPLMKTNLVSHSLKYL  274 (353)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-------~~----~~~~~Dt~~l~~~~~~~~~~~~L~~l  274 (353)
                      .+|.+|+              ++..+|+||..+|+.++...       .+    ...++|+..+++.+++. ..++|..+
T Consensus        78 ~~~~~~~--------------~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~L~~l  142 (174)
T d2guia1          78 DEFMDYI--------------RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPG-KRNSLDAL  142 (174)
T ss_dssp             HHHHHHH--------------TTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTT-SCCSHHHH
T ss_pred             HHHHHhc--------------CCCeEEEeecchhhHHHHHHHHHhCCCCCCcccccchhhHHHHHHHHcCC-CCCCHHHH
Confidence            9999999              88899999999999998811       11    14568999998877765 46799999


Q ss_pred             HHHHhCCcCCCC-CCChHHHHHHHHHHHHHHH
Q 018586          275 TRTYLGYDIQSG-VHDPYEDCVSVMRLYKRFR  305 (353)
Q Consensus       275 ~~~~~~~~~~~~-~H~Al~Da~~t~~l~~~~~  305 (353)
                      +..| |++.... +|+|++||.+|++||.+|.
T Consensus       143 ~~~~-~~~~~~~~~H~Al~Da~~ta~v~~~l~  173 (174)
T d2guia1         143 CARY-EIDNSKRTLHGALLDAQILAEVYLAMT  173 (174)
T ss_dssp             HHHT-TCCCTTCSSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHc-CCCCCCCCCcCHHHHHHHHHHHHHHHc
Confidence            9998 8875544 8999999999999999884

>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 1, TREX1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.6e-23  Score=181.55  Aligned_cols=166  Identities=14%  Similarity=0.093  Sum_probs=124.1

Q ss_pred             CCceeeccCcccccc--CCCCccceeEEeeecC-----------------C--CCeEEeeeccCCCCccccccccCCCCH
Q 018586          134 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDE-----------------D--ENVIFHTYVQPQLPVTNYRYEVTGLTE  192 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~-----------------~--g~~~~~~lv~P~~~i~~~~~~~~GIt~  192 (353)
                      ...|+++|+||||++  .++++|+ +.+.+.+.                 .  ....|+.+|+|..+|++.++++||||+
T Consensus         3 ~~~~v~~D~ETTGl~~~~~~Iiei-a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~P~~~I~~~~~~i~GIt~   81 (226)
T d3b6oa1           3 MQTLIFLDLEATGLPSSRPEVTEL-CLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK   81 (226)
T ss_dssp             CCEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred             CCeEEEEEEECCCCCCCCCceEEE-EEEEEeCCcccccccccccccccccccceeceeeeeECCCCCCCHHHHHhcCCCH
Confidence            356899999999985  5667777 56655321                 0  112589999999999999999999999


Q ss_pred             hhhcCCC--C-hHHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-------CcCC--CCceeeccccc
Q 018586          193 EDIKNAM--P-LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYP--DHMLRDTAKYR  259 (353)
Q Consensus       193 e~l~~~~--~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~--~~~~~Dt~~l~  259 (353)
                      ++|.+++  + ++++.+.+..|+...          +++.+|||||+ .||+.||+       +..+  ....+||+.++
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~f~~~~----------~~~~~lVahN~~~FD~~~l~~~~~r~~~~~~~~~~~~iDtl~l~  151 (226)
T d3b6oa1          82 AELEVQGRQRFDDNLAILLRAFLQRQ----------PQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAAL  151 (226)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHTS----------CSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHH
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHhc----------cCCceEEEechhHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHH
Confidence            9998763  3 345555555665322          26678999995 89999998       2233  24568999887


Q ss_pred             CCccc--------CCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhhh
Q 018586          260 PLMKT--------NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQV  311 (353)
Q Consensus       260 ~~~~~--------~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~~  311 (353)
                      +.+.+        ....++|.+|+++++|++ ..++|+|++||.+|++||+++.+++.+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~g~~-~~~aH~Al~D~~~~~~l~~~~~~~l~~~  210 (226)
T d3b6oa1         152 KALEQASSPSGNGSRKSYSLGSIYTRLYWQA-PTDSHTAEGDVLTLLSICQWKPQALLQW  210 (226)
T ss_dssp             HHHHTC---------CCCSHHHHHHHHHSSC-CSSTTSHHHHHHHHHHHHTSSHHHHHHH
T ss_pred             HHhcccccccccccccCcchHHHHHHHcCCC-CCCCcChHHHHHHHHHHHHHHHHHHHHH
Confidence            66543        234689999999987998 4569999999999999999988876553

>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 2, TREX2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.9e-22  Score=175.10  Aligned_cols=167  Identities=18%  Similarity=0.180  Sum_probs=121.5

Q ss_pred             CCCceeeccCcccccc--CCCCccceeEEeeecCC----------------CCeEEeeeccCCCCccccccccCCCCHhh
Q 018586          133 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDED----------------ENVIFHTYVQPQLPVTNYRYEVTGLTEED  194 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~~----------------g~~~~~~lv~P~~~i~~~~~~~~GIt~e~  194 (353)
                      ....|+++|+||||++  .+.++|+ +.+.+.+..                ....|+.+|+|..+|++.++++||||+++
T Consensus         6 ~~~~~v~~D~ETTGl~~~~~~Iiei-a~i~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~v~P~~~i~~~~~~itGIt~~~   84 (228)
T d1y97a1           6 RAETFVFLDLEATGLPSVEPEIAEL-SLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEG   84 (228)
T ss_dssp             CCSEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHH
T ss_pred             CCCEEEEEEEecCCcCCCCCCeEEE-EEEEEECCccccccccccccccccceecceeeEECCCCCCCHHHHHhcCCCHHH
Confidence            4456999999999985  4677777 566663221                12248999999999999999999999999


Q ss_pred             hcCCC--ChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhc-------CcCCC-CceeecccccCCcc
Q 018586          195 IKNAM--PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR-------MNYPD-HMLRDTAKYRPLMK  263 (353)
Q Consensus       195 l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~-------~~~~~-~~~~Dt~~l~~~~~  263 (353)
                      |.+++  ++.++..++.+.+.+..         .++.++|||| +.||+.+|+       +.+|. ..++||+.+++.+.
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~n~~~fD~~~l~~~l~r~~~~~~~~~~~iDtl~~~r~l~  155 (228)
T d1y97a1          85 LARCRKAGFDGAVVRTLQAFLSRQ---------AGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLD  155 (228)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHTTS---------CSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHH
T ss_pred             HHhccCcchHHHHHHHHHHHhhhc---------cCCceEEeechHHHhHHHHHHHHHHcCCCCCCCcchhhHHHHHHHhh
Confidence            98774  44555555555443332         2678999999 589999997       33443 56789998776543


Q ss_pred             c---------CCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          264 T---------NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       264 ~---------~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      +         ...+++|..|++.|+|.+ ...+|+|++||.+|++||+++..++.+
T Consensus       156 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~-~~~aH~Al~Da~at~~l~~~~~~~l~~  210 (228)
T d1y97a1         156 RAHSHGTRARGRQGYSLGSLFHRYFRAE-PSAAHSAEGDVHTLLLIFLHRAAELLA  210 (228)
T ss_dssp             HHC----------CCSHHHHHHHHHSSC-CC---CHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hhcccccccCcCCCcCHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            2         334679999999987877 456999999999999999998876544

>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease ERI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.4e-21  Score=165.44  Aligned_cols=166  Identities=16%  Similarity=0.240  Sum_probs=124.9

Q ss_pred             ceeeccCccccc----c--CCCCccceeEEeeecCCCCe--EEeeeccCC--CCccccccccCCCCHhhhcCCCChHHHH
Q 018586          136 KAVAMDCEMVGG----G--SNGTLDLCARVCLVDEDENV--IFHTYVQPQ--LPVTNYRYEVTGLTEEDIKNAMPLKEVK  205 (353)
Q Consensus       136 ~~~~~D~Ettg~----~--~~~~~~il~~v~ivd~~g~~--~~~~lv~P~--~~i~~~~~~~~GIt~e~l~~~~~~~~v~  205 (353)
                      .|+++|+|||+.    .  ...++|+ |+|.+-..++.+  .|+.+|+|.  .++++.++++||||+++|.+++++.+|+
T Consensus         7 ~~iv~D~EtT~~~~~~~~~~~~Iiei-gav~~d~~~~~~~~~f~~~v~P~~~~~i~~~~~~itgit~e~l~~~~~~~~~~   85 (200)
T d1w0ha_           7 YICIIDFEATCEEGNPPEFVHEIIEF-PVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVL   85 (200)
T ss_dssp             EEEECCCEECCCTTCCTTSCCCEEEE-EEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHHH
T ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEE-EEEEEECCCCeEEEEEEEEEecCccccCCHHHHHHHCCCHHHhhhhhhhHhHH
Confidence            489999999932    2  3346666 666653345666  489999996  4799999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccccCCCCCcEEEecccHH-HHHHhc-------CcCCC--CceeecccccCCccc-CCCCCcHHHH
Q 018586          206 DKILEILNNGESTGRLMLDDGKARLLVGHGLEH-DLDSLR-------MNYPD--HMLRDTAKYRPLMKT-NLVSHSLKYL  274 (353)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~-D~~~l~-------~~~~~--~~~~Dt~~l~~~~~~-~~~~~~L~~l  274 (353)
                      .++.+|+.....       ...+.+++++|..+ |..+|+       +..|.  ..++|+..++....+ ...+++|..|
T Consensus        86 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~d~~~~L~~~~~~~~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~L~~l  158 (200)
T d1w0ha_          86 KKVIDWMKLKEL-------GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIM  158 (200)
T ss_dssp             HHHHHHHHHTTB-------TTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHH
T ss_pred             HHHHHHhcCCcE-------EeeeeeeeccchhhhHHHHHHHHHHhccCCCcccccceeeHHhHhhhhccccccchHHHHH
Confidence            999999954421       12333445555444 456776       44443  557898877665544 3346799999


Q ss_pred             HHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhh
Q 018586          275 TRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       275 ~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      +++| |++..+.+|+|++||++|++|+.++++++.+
T Consensus       159 ~~~~-gi~~~~~aH~Al~Da~~~a~v~~~ll~~g~~  193 (200)
T d1w0ha_         159 LEKL-GMDYDGRPHCGLDDSKNIARIAVRMLQDGCE  193 (200)
T ss_dssp             HHHT-TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHc-CCCCCCCCcChHHHHHHHHHHHHHHHHcCCC
Confidence            9988 9997666899999999999999999998765

>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Ribonuclease T
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.72  E-value=9.2e-18  Score=142.48  Aligned_cols=163  Identities=19%  Similarity=0.184  Sum_probs=117.8

Q ss_pred             eeccCccccccC--CCCccceeEEeee-cCCCCeE------EeeeccCCCCccccccccCCCCHhhhcCCC-C----hHH
Q 018586          138 VAMDCEMVGGGS--NGTLDLCARVCLV-DEDENVI------FHTYVQPQLPVTNYRYEVTGLTEEDIKNAM-P----LKE  203 (353)
Q Consensus       138 ~~~D~Ettg~~~--~~~~~il~~v~iv-d~~g~~~------~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~-~----~~~  203 (353)
                      |++|+||||+++  +.++|+ |+|.+. +..+...      +...+.|..++++.++.+||||++++.+++ .    +.+
T Consensus        14 Vv~D~ETTGl~~~~~~IIei-gav~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~git~~~~~~~~~~~~~~~~~   92 (202)
T d2f96a1          14 VVVDVETGGFNSATDALLEI-AATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTE   92 (202)
T ss_dssp             EEEEEEESSSCTTTBCEEEE-EEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHHHH
T ss_pred             EEEEEeCCCCCCCCCceEEE-EEEEEEecccCceecceeEEEeeccCccccCCHHHHHhcCCcHHHHHhcccchhHHHHH
Confidence            799999999864  567777 666653 3344432      233445667899999999999999987663 3    445


Q ss_pred             HHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-------CcCCCCceeecccccCCcccCCCCCcHHHHHH
Q 018586          204 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTR  276 (353)
Q Consensus       204 v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~  276 (353)
                      ++..+.+++...         .....++++|+..+|..+++       ...+.....|+.............++|..+++
T Consensus        93 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  163 (202)
T d2f96a1          93 IFRGIRKALKAN---------GCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQ  163 (202)
T ss_dssp             HHHHHHHHHHHT---------TCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHSCCSHHHHHH
T ss_pred             HHHHHHHHHHhh---------cccccceeeeehhhhHHHHHHHHHHhCCCcCCCcccchhhhhhhhhcccCCcCHHHHHH
Confidence            555555555322         22567899999999999987       22233445566655544445556789999999


Q ss_pred             HHhCCcCCCC-CCChHHHHHHHHHHHHHHHhchhhh
Q 018586          277 TYLGYDIQSG-VHDPYEDCVSVMRLYKRFRRQDHQV  311 (353)
Q Consensus       277 ~~~~~~~~~~-~H~Al~Da~~t~~l~~~~~~~~~~~  311 (353)
                      .| |+++.+. +|+|+.||.+|++||.++.+++.++
T Consensus       164 ~~-gi~~~~~~aH~Al~Da~~ta~i~~~l~~~~~~~  198 (202)
T d2f96a1         164 AA-GMEFDNREAHSARYDTEKTAELFCGIVNRWKEM  198 (202)
T ss_dssp             HT-TCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             Hc-CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHc
Confidence            88 9987664 8999999999999999999998763

>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease I
species: Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]

Probab=99.71  E-value=1e-17  Score=161.04  Aligned_cols=165  Identities=19%  Similarity=0.215  Sum_probs=117.5

Q ss_pred             CceeeccCccccccC--CCCccceeEEeeecCCCCeE--Eee-eccCCC--CccccccccCCCCHhhhcCC-CChHHHHH
Q 018586          135 PKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVI--FHT-YVQPQL--PVTNYRYEVTGLTEEDIKNA-MPLKEVKD  206 (353)
Q Consensus       135 ~~~~~~D~Ettg~~~--~~~~~il~~v~ivd~~g~~~--~~~-lv~P~~--~i~~~~~~~~GIt~e~l~~~-~~~~~v~~  206 (353)
                      ..||++|+||||+++  +.++++ |+| ++|.+++++  ++. +++|..  ...+.++.+||||+++|.++ .+..+++.
T Consensus         2 ~~fv~~D~ETtG~~~~~d~ii~~-~ai-~~d~~~~~~~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~~~~e~~~   79 (467)
T d2qxfa1           2 STFLFHDYETFGTHPALDRPAQF-AAI-RTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAA   79 (467)
T ss_dssp             CEEEEEEEEESSSCTTTSCEEEE-EEE-EECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHH
T ss_pred             CeEEEEEEECCCcCCCCCcEEEE-EEE-EECCCCcEEeEEEEEeecCCCCCCCCHHHHHHhCcCHHHHHcCCCCHHHHHH
Confidence            359999999999874  466666 555 457777764  444 455553  33457889999999999876 58889999


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcEEEecc-cHHHHHHhcCc------CC-------CCceeecccccC------------
Q 018586          207 KILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMN------YP-------DHMLRDTAKYRP------------  260 (353)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~~~------~~-------~~~~~Dt~~l~~------------  260 (353)
                      .+.+++.            ..+.++|||| +.||..||+..      .|       ....+|+..+.+            
T Consensus        80 ~i~~~~~------------~~~~~~v~~n~~~FD~~fl~~~~~r~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~  147 (467)
T d2qxfa1          80 RIHSLFT------------VPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINW  147 (467)
T ss_dssp             HHHHHHT------------STTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCC
T ss_pred             HHHHHHh------------cCCCcEEEEecchhhHHHHHHHHHHhcccchhhcccccccchhhhhhhhhccccCCchhhh
Confidence            9999992            1345666655 79999999811      11       133467655443            


Q ss_pred             -CcccCCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhchhhhhhhc
Q 018586          261 -LMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIG  315 (353)
Q Consensus       261 -~~~~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~~~~~~~~  315 (353)
                       ....+...++|..||..+ |++ ...+|+|++||.+|++|++.+.++...++...
T Consensus       148 ~~~~~~~~~~kL~~la~~~-gi~-~~~aH~Al~D~~~t~~l~~~i~~~~~~~~~~~  201 (467)
T d2qxfa1         148 PENDDGLPSFRLEHLTKAN-GIE-HSNAHDAMADVYATIAMAKLVKTRQPRLFDYL  201 (467)
T ss_dssp             CBCTTSSBCCCHHHHHHHT-TCC-CC---CTTHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             hhccccchhhhHHHHHHHh-CCC-ccccccccCCHHHHHHHHHHhhhhhHHHHHHH
Confidence             112244579999999999 888 45699999999999999999998876655554

>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Oligoribonuclease
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=5.7e-13  Score=110.21  Aligned_cols=157  Identities=17%  Similarity=0.162  Sum_probs=102.5

Q ss_pred             CCCceeeccCcccccc--CCCCccceeEEeeecCCCCeE---EeeeccCCC-------CccccccccCCCCHhhhcCCCC
Q 018586          133 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI---FHTYVQPQL-------PVTNYRYEVTGLTEEDIKNAMP  200 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~--~~~~~~il~~v~ivd~~g~~~---~~~lv~P~~-------~i~~~~~~~~GIt~e~l~~~~~  200 (353)
                      ....+|++|+||||++  .+.++|+ |+|.+ |.++...   ....+.|..       .+........++........+.
T Consensus         3 ~~~~lv~lD~ETTGLdp~~d~IIeI-aaV~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T d2igia1           3 NENNLIWIDLEMTGLDPERDRIIEI-ATLVT-DANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMG   80 (180)
T ss_dssp             GGGCEEEEEEEESSSCTTTCCEEEE-EEEEE-CTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCC
T ss_pred             CCCCEEEEEEECCCCCCCCCeEEEE-EEEEE-ECCceEeeccceeeeeccccccccccccccccccccchhhhhcccccc
Confidence            3457999999999986  4567777 55544 4555543   233333332       2222333456667777778888


Q ss_pred             hHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCcC------CCCceeecccccCCcccCCCCCcHHHH
Q 018586          201 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY------PDHMLRDTAKYRPLMKTNLVSHSLKYL  274 (353)
Q Consensus       201 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~------~~~~~~Dt~~l~~~~~~~~~~~~L~~l  274 (353)
                      ++.+...+..+...-.        ..+..++++||+.||+.+|....      .....+|+..+.+.....       ..
T Consensus        81 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~FD~~~l~~~~~~~~~~~~~~~~D~~~~~~~~~~~-------~~  145 (180)
T d2igia1          81 DREAELATLEFLKQWV--------PAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW-------KP  145 (180)
T ss_dssp             HHHHHHHHHHHHTTTS--------CTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHH-------CG
T ss_pred             HHHHHHHHHHHHhhhc--------cCCCcEEEechhcchhHHHHHHhhhhcccCCCcEEeehhhHHHHhhc-------Ch
Confidence            8888888888873211        23567899999999999999222      124578887665443211       11


Q ss_pred             HHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhch
Q 018586          275 TRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       275 ~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                      ...+ |++ ..++|+|++||++|.++++.+++.+
T Consensus       146 ~~~~-~~~-~~~aH~Al~Dv~~ti~~l~~yr~~~  177 (180)
T d2igia1         146 EILD-GFT-KQGTHQAMDDIRESVAELAYYREHF  177 (180)
T ss_dssp             GGGG-GSC-CCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhc-CCC-CCCCcccHHHHHHHHHHHHHHHHHh
Confidence            1223 777 4569999999999999999877753

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.7e-12  Score=83.03  Aligned_cols=49  Identities=33%  Similarity=0.511  Sum_probs=42.6

Q ss_pred             CCceeeccccccccChHHHHHHHhhhcCCCCCC-ccccCcccCCChHHHHhcc
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~-~C~~C~~~f~~~~~l~~H~   63 (353)
                      ||||+|+ ||++|..+..|..|+++  |++++| .|..|++.|...+.|..|+
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~--Ht~ekpy~C~~C~k~F~~~~~L~~H~   50 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSM--HLGLRPYGCGVCGKKFKMKHHLVGHM   50 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHH--HSCCCSEECTTTSCEESSSHHHHHHH
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhc--cccccCCcCCCcCCEecCHHHHHHHH
Confidence            6899995 99999999999999999  999988 8777777777777777775

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.2e-10  Score=69.06  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             CCCCCCCceeeccccccccChHHHHHHHhhhcCCCCC
Q 018586            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (353)
Q Consensus         7 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~   43 (353)
                      |+|+|+|||+|..||++|..+++|..|+++  |.++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~--H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKR--YHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHH--TTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcc--cCCCC
Confidence            689999999999999999999999999999  77654

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.1e-10  Score=67.34  Aligned_cols=33  Identities=27%  Similarity=0.539  Sum_probs=31.2

Q ss_pred             CCCCCCceeeccccccccChHHHHHHHhhhcCCCC
Q 018586            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      .|+|+|||+|..||++|..+++|..|+++  |+++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~--HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRV--HTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHG--GGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccc--cCCC
Confidence            38999999999999999999999999999  9875

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.1e-10  Score=68.99  Aligned_cols=36  Identities=31%  Similarity=0.535  Sum_probs=34.0

Q ss_pred             CCCCCCCCCceeeccccccccChHHHHHHHhhhcCCCC
Q 018586            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus         5 ~~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      .+++|+++|||+|+.||++|...++|.+|+++  |+||
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~--HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRT--HTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTT--TCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCcc--CCCC
Confidence            47899999999999999999999999999999  9985

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=5.1e-10  Score=65.45  Aligned_cols=33  Identities=21%  Similarity=0.446  Sum_probs=30.8

Q ss_pred             CCCCCCceeeccccccccChHHHHHHHhhhcCCCC
Q 018586            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus         8 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      .|+|+|||+|++|++.|..+++|++|+++  |++.
T Consensus         1 g~TGekPy~C~~C~k~F~~~~~L~~H~r~--Ht~~   33 (35)
T d1srka_           1 GSSGKRPFVCRICLSAFTTKANCARHLKV--HTDT   33 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGG--GTSC
T ss_pred             CCCCCccccCCCCCCcccChHHHHHHccc--cCCc
Confidence            38999999999999999999999999999  8865

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.4e-10  Score=65.46  Aligned_cols=34  Identities=15%  Similarity=0.332  Sum_probs=30.2

Q ss_pred             CCCCCCCceeeccccccccChHHHHHHHhhhcCCC
Q 018586            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (353)
Q Consensus         7 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~   41 (353)
                      |+|+|+|||+|+.|+++|..+++|.+|++.+ |++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~-H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQK-HTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHH-SSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccc-cCC
Confidence            6899999999999999999999999998642 654

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=7e-10  Score=66.13  Aligned_cols=34  Identities=29%  Similarity=0.505  Sum_probs=31.8

Q ss_pred             CCCCCCCCceeeccccccccChHHHHHHHhhhcCCC
Q 018586            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (353)
Q Consensus         6 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~   41 (353)
                      .|+|+|+|||+|+.|+++|..+++|.+|+++  |..
T Consensus         3 ~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~--H~~   36 (37)
T d1p7aa_           3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKR--HML   36 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG--GTC
T ss_pred             CCccCCccCeEeCCCCCEecCHHHHHHHHhc--CcC
Confidence            5899999999999999999999999999998  753

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.9e-10  Score=73.12  Aligned_cols=46  Identities=24%  Similarity=0.456  Sum_probs=25.6

Q ss_pred             ccccCcccCCChHHHHhcc---CCCCCCCCCCccccccccccccccccCchhHHHHHHHh
Q 018586           45 KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEAC  101 (353)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~---~~~~~c~~Cgk~f~~~~C~~C~k~F~~~s~L~~H~~~h  101 (353)
                      .| .||+.|..+..|..|+   +++.++          .|++||++|.+.+.|..|+++|
T Consensus         5 ~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy----------~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           5 PC-QCGKSFTHKSQRDRHMSMHLGLRPY----------GCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             EC-TTSCEESSHHHHHHHHHHHSCCCSE----------ECTTTSCEESSSHHHHHHHTTT
T ss_pred             CC-CCCCeECCHHHhHHHhhccccccCC----------cCCCcCCEecCHHHHHHHHhcC
Confidence            55 3666666666666665   444443          4555556666666666665544

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.1e-09  Score=64.47  Aligned_cols=36  Identities=42%  Similarity=0.779  Sum_probs=32.8

Q ss_pred             CCCceeeccccccccChHHHHHHHh-hhcCCCCCC-cccc
Q 018586           11 STARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP-KCAV   48 (353)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~-~~~h~~~~~-~C~~   48 (353)
                      -+|||+|+.||++|...++|.+|++ +  |++++| .|+.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~--Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQV--HTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHT--SCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCc--cCCCcCcCCcC
Confidence            5799999999999999999999975 8  999999 8863

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.9e-09  Score=64.66  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=28.7

Q ss_pred             ccccccccccCchhHHHHHH-HhcCCCCCCcc
Q 018586           80 GCNLCMNIFDSPSSLIKHKE-ACSLSAPVPFE  110 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~-~h~~~k~~~c~  110 (353)
                      .|.+||++|.+.++|++|++ +|+++|||+|.
T Consensus         7 ~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           7 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             cCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            68999999999999999976 79999999996

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.1e-09  Score=62.57  Aligned_cols=29  Identities=21%  Similarity=0.169  Sum_probs=27.4

Q ss_pred             ccccccccCchhHHHHHHHhcCCCCCCcc
Q 018586           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFE  110 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~~~k~~~c~  110 (353)
                      +.||++|...++|++|+++|++++||+|+
T Consensus         7 ~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           7 PACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             TTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45999999999999999999999999996

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.68  E-value=4.3e-09  Score=58.76  Aligned_cols=29  Identities=28%  Similarity=0.654  Sum_probs=27.6

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~   43 (353)
                      |||.|+.|+++|...++|.+|+++  |++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~--HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS--HTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT--TTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCc--ccCCC
Confidence            699999999999999999999999  99875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=2.9e-09  Score=58.78  Aligned_cols=28  Identities=32%  Similarity=0.764  Sum_probs=26.5

Q ss_pred             CCceeeccccccccChHHHHHHHhhhcCCC
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~   41 (353)
                      ||||+|+.|+++|..+++|.+|+++  |+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~--HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRT--HTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH--HHC
T ss_pred             CcCccCCCCcCEecccccccccCCC--ccC
Confidence            6899999999999999999999999  875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=5.6e-09  Score=58.19  Aligned_cols=29  Identities=38%  Similarity=0.762  Sum_probs=27.4

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~   43 (353)
                      |||.|+.|+++|..+++|.+|+++  |++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~--HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT--HQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG--GGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCc--cCCcC
Confidence            699999999999999999999999  99874

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.5e-09  Score=55.63  Aligned_cols=26  Identities=38%  Similarity=0.770  Sum_probs=24.5

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHS   40 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~   40 (353)
                      |||+|++|||+|...++|.+|+++  |+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqri--HT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRI--HT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH--HH
T ss_pred             CCccCCCCcCeeccCcccccCccC--CC
Confidence            799999999999999999999998  64

>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of prokaryotic DNA polymerase
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.4e-07  Score=78.07  Aligned_cols=146  Identities=15%  Similarity=0.109  Sum_probs=99.0

Q ss_pred             CceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhc
Q 018586          135 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  214 (353)
Q Consensus       135 ~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~~  214 (353)
                      .+.+++|+||+|+++-... + ..+.+....+...+..+.....               ......+..++++.+..++  
T Consensus        26 ~~~~a~DtEt~~l~~~~~~-i-~~i~i~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~l~~~l--   86 (195)
T d1kfsa1          26 APVFAFDTETDSLDNISAN-L-VGLSFAIEPGVAAYIPVAHDYL---------------DAPDQISRERALELLKPLL--   86 (195)
T ss_dssp             SSSEEEEEEESCSCTTTCC-E-EEEEEEEETTEEEEEECCCCST---------------TCCCCCCHHHHHHHHHHHH--
T ss_pred             CCeEEEEeeeCCCCccccc-c-ccceeeccCCcccccccccccc---------------cccccccHHHHHHHHHHHH--
Confidence            3489999999998644322 2 3444433344333322221111               1112235678889999998  


Q ss_pred             CCCCcccccCCCCCcEEEecccHHHHHHhcCc--CCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCC------
Q 018586          215 GESTGRLMLDDGKARLLVGHGLEHDLDSLRMN--YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG------  286 (353)
Q Consensus       215 ~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~--~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~------  286 (353)
                                .+.....|+||+.+|+.+|...  .....+.||+..+....+...+++|..++..+++..+...      
T Consensus        87 ----------e~~~i~ki~hn~~~d~~~l~~~~~~~~~~~~Dt~~a~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~  156 (195)
T d1kfsa1          87 ----------EDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGK  156 (195)
T ss_dssp             ----------TCTTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSSCCCCCHHHHHCS
T ss_pred             ----------hcccceeeechHHHHHHHHHHHhccccCccHHHHHHHHHhcccccccchHHHHHHHhhcccchHhhhccc
Confidence                      2355577999999999999932  2235577888888777777788999999999988875422      


Q ss_pred             ---C------------CChHHHHHHHHHHHHHHHhchh
Q 018586          287 ---V------------HDPYEDCVSVMRLYKRFRRQDH  309 (353)
Q Consensus       287 ---~------------H~Al~Da~~t~~l~~~~~~~~~  309 (353)
                         .            .-|..||.+|.+||..+.++.+
T Consensus       157 ~~~~~~~~~i~~~~~~~YAa~D~~~t~~L~~~l~~~L~  194 (195)
T d1kfsa1         157 GKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQ  194 (195)
T ss_dssp             GGGCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence               1            2378899999999999988754

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.3e-08  Score=56.73  Aligned_cols=26  Identities=23%  Similarity=0.347  Sum_probs=24.4

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|++||++|.+.++|.+|+++|+++|
T Consensus         4 ~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           4 ACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             ECCcCCCeecchHHhhhhcCccCCcC
Confidence            58999999999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.54  E-value=1.1e-08  Score=57.08  Aligned_cols=26  Identities=19%  Similarity=0.445  Sum_probs=24.4

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|++|+++|.+.++|++|+++|+|||
T Consensus         4 ~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           4 VCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CCCCCCCCCCCchHcccccCcccCCC
Confidence            58999999999999999999999986

>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: CAF1-like ribonuclease
domain: CCR4-NOT transcription complex subunit 7, CAF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=5.1e-07  Score=77.68  Aligned_cols=158  Identities=13%  Similarity=0.110  Sum_probs=103.2

Q ss_pred             CCceeeccCccccccCC-----------------------CCccceeEEeeecCCCCe-------EEeeeccCCCC-ccc
Q 018586          134 GPKAVAMDCEMVGGGSN-----------------------GTLDLCARVCLVDEDENV-------IFHTYVQPQLP-VTN  182 (353)
Q Consensus       134 ~~~~~~~D~Ettg~~~~-----------------------~~~~il~~v~ivd~~g~~-------~~~~lv~P~~~-i~~  182 (353)
                      .-+||++|+|++|+...                       .++++  .+++.+.+|+.       .|+-++.|... ..+
T Consensus        23 ~~~fVAiD~EF~G~~~~~~~~~~~t~~~~Y~~lr~nv~~~~iiQ~--Glt~~~~~g~~~~~~~~w~FNf~~~~~~~~~~~  100 (252)
T d2d5ra1          23 KYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQL--GLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQ  100 (252)
T ss_dssp             HCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEE--EEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCH
T ss_pred             cCCEEEEeeeccCcccCCCCccCCCHHHHHHHHHHHHhhcceeEE--EEEeecccCCCCCCceeEEEEEEeCCcccccCH
Confidence            34699999999996311                       12222  45666777653       25556666542 222


Q ss_pred             ccccc---CCCCHhh-hcCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-----Cc-------
Q 018586          183 YRYEV---TGLTEED-IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-----MN-------  246 (353)
Q Consensus       183 ~~~~~---~GIt~e~-l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-----~~-------  246 (353)
                      ....+   +||.=.. ...+.+.....+.+...          .....++.++|+||..+|+.+|-     -.       
T Consensus       101 ~Si~fL~~~G~DF~k~~~~GI~~~~f~~~l~~s----------~~~~~~~~~wv~f~g~yD~~yl~k~l~~~~LP~~~~e  170 (252)
T d2d5ra1         101 DSIELLTTSGIQFKKHEEEGIETQYFAELLMTS----------GVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELD  170 (252)
T ss_dssp             HHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTT----------TSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHH
T ss_pred             HHHHHHHHcCCChHHHHHcCCCHHHHHHHHHhh----------hhhhcCCCcEEEecchhHHHHHHHHHcCCCCCCCHHH
Confidence            22222   6666333 33555554433333221          11234788999999999998876     11       


Q ss_pred             --------CCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHHHHhch
Q 018586          247 --------YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  308 (353)
Q Consensus       247 --------~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~~~~~~  308 (353)
                              +|.  ++||..+++...+  ...+|++|++.+ |++-.+..|.|-.||..|+.+|.++.+..
T Consensus       171 F~~~v~~~FP~--vyDtK~l~~~~~~--~~~~L~~la~~L-~v~~~g~~H~AG~DsllT~~~F~~l~~~~  235 (252)
T d2d5ra1         171 FFEILRLFFPV--IYDVKYLMKSCKN--LKGGLQEVAEQL-ELERIGPQHQAGSDSLLTGMAFFKMREMF  235 (252)
T ss_dssp             HHHHHHHHCSC--EEEHHHHGGGCTT--CCSSHHHHHHHH-TCCCCSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCch--HhhHHHHHhhccC--CCchHHHHHHHc-CCCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence                    343  7899888776543  356899999998 98855559999999999999999998875

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.3e-08  Score=55.86  Aligned_cols=25  Identities=28%  Similarity=0.558  Sum_probs=22.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      .|++||++|.+.++|..|+++|+||
T Consensus         9 ~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           9 GCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             ECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             eCCCCCCEeCchHHhHhhccccCCC
Confidence            5888999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5.2e-08  Score=55.09  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=23.2

Q ss_pred             cccccccccCchhHHHHHHHhcCCC
Q 018586           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        81 C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .+.|+|+|...++|++|+++|+|+|
T Consensus         7 ~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           7 WSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             STTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCCCCcCcCChhHhhhhcCcccccC
Confidence            4679999999999999999999986

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5.7e-08  Score=57.97  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=21.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      .|++|||+|.+.++|..|+++|+||
T Consensus        14 ~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2          14 KCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             BCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ecCCCCceeeCHHHHHHhCccCCCC
Confidence            5788889999999999999999886

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.4e-08  Score=52.21  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=21.6

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|++|||+|.+.++|..|+|+|+
T Consensus         4 ~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           4 KCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHH
T ss_pred             cCCCCcCeeccCcccccCccCCC
Confidence            58999999999999999999995

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.3e-07  Score=52.91  Aligned_cols=28  Identities=32%  Similarity=0.691  Sum_probs=26.4

Q ss_pred             Cceeecc--ccccccChHHHHHHHhhhcCCCC
Q 018586           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      |||.|+.  |+++|...++|++|+++  |+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~--HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS--HTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH--TTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc--CcCC
Confidence            6999998  99999999999999999  9985

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=4.8e-08  Score=61.08  Aligned_cols=36  Identities=22%  Similarity=0.488  Sum_probs=32.8

Q ss_pred             CCCCCCCCceeecc--ccccccChHHHHHHHhhhcCCCCC
Q 018586            6 ELPKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQ   43 (353)
Q Consensus         6 ~~~h~~~k~~~C~~--C~k~f~~~~~l~~H~~~~~h~~~~   43 (353)
                      ...|++++||.|..  |+++|...++|..|+++  |++++
T Consensus        10 h~~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~--Htgek   47 (47)
T d1ncsa_          10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT--HLEDR   47 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHH--HTTTC
T ss_pred             hhhccCCCCeECCcCCCCccccCchHHHhhccc--ccCCC
Confidence            45699999999987  99999999999999999  99874

>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Ribonuclease D, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1e-06  Score=72.99  Aligned_cols=83  Identities=12%  Similarity=0.111  Sum_probs=64.7

Q ss_pred             CCcEEEecccHHHHHHhc--CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCC---------------CCC
Q 018586          227 KARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG---------------VHD  289 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~---------------~H~  289 (353)
                      ...+-||||+.+|+.+|.  .+.....++||+..+..+. .....+|+.|++.++|+.+...               -+-
T Consensus        73 ~~i~Kv~hn~~~D~~~L~~~~g~~~~~~~Dt~~~~~~l~-~~~~~~L~~l~~~~lg~~ldK~~q~sdW~~rPL~~~qi~Y  151 (193)
T d1yt3a3          73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEY  151 (193)
T ss_dssp             TTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTT-CCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHH
T ss_pred             CCceEEEecchhhhhhhhhhcCccccccchhhHHHhhhc-cccccchhhHHhhhccccccchhhccccccccccHHHHHH
Confidence            556779999999999987  2333356899988776554 3457899999999999987643               145


Q ss_pred             hHHHHHHHHHHHHHHHhchhh
Q 018586          290 PYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       290 Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      |..||..+..||.++..+..+
T Consensus       152 AA~Dv~~ll~L~~~L~~~l~~  172 (193)
T d1yt3a3         152 AAADVWYLLPITAKLMVETEA  172 (193)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHh
Confidence            778999999999999888655

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=1e-07  Score=52.39  Aligned_cols=24  Identities=25%  Similarity=0.544  Sum_probs=22.6

Q ss_pred             ccccccccccCchhHHHHHHHhcC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~  103 (353)
                      .|++|+|+|.++++|..|+++|+|
T Consensus         5 ~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           5 QCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCCCCcCEecccccccccCCCccC
Confidence            689999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.3e-07  Score=52.87  Aligned_cols=28  Identities=29%  Similarity=0.524  Sum_probs=26.1

Q ss_pred             Cceeecc--ccccccChHHHHHHHhhhcCCCC
Q 018586           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      |||.|+.  |+++|...++|.+|+++  |+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~--HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI--HTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH--HHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccc--cCCC
Confidence            6999987  99999999999999999  8875

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=4e-07  Score=51.32  Aligned_cols=29  Identities=31%  Similarity=0.584  Sum_probs=26.6

Q ss_pred             Cceeec--cccccccChHHHHHHHhhhcCCCCC
Q 018586           13 ARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQ   43 (353)
Q Consensus        13 k~~~C~--~C~k~f~~~~~l~~H~~~~~h~~~~   43 (353)
                      |||.|+  .|+++|...++|.+|+++  |++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~--HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT--HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT--TSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc--ccccC
Confidence            699996  599999999999999999  99874

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=5.5e-07  Score=50.23  Aligned_cols=24  Identities=17%  Similarity=0.423  Sum_probs=21.8

Q ss_pred             ccc--ccccccCchhHHHHHHHhcCC
Q 018586           81 CNL--CMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        81 C~~--C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      |+.  |+|+|.+.++|+.|+++|+||
T Consensus         5 C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           5 CTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCCCCCCceECChhHhhhhcCcCcCC
Confidence            554  999999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=4.9e-07  Score=52.44  Aligned_cols=25  Identities=16%  Similarity=0.519  Sum_probs=22.1

Q ss_pred             ccccccccccCchhHHHHHHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      .|++|+|.|.+.++|+.|+++|+..
T Consensus         9 ~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           9 VCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             cCCCCCCcccChHHHHHHccccCCc
Confidence            5888999999999999999999864

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.5e-07  Score=52.21  Aligned_cols=25  Identities=20%  Similarity=0.293  Sum_probs=21.7

Q ss_pred             ccccccccccCchhHHHHHHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      .|++||++|.+.++|..|+++|+++
T Consensus        10 ~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2          10 ACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             ECCCCCCCcCCHhHHHHhCcccCCC
Confidence            5788889999999999999999865

>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of prokaryotic DNA polymerase
species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]

Probab=98.05  E-value=2e-06  Score=69.69  Aligned_cols=133  Identities=10%  Similarity=0.116  Sum_probs=91.0

Q ss_pred             ceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcC
Q 018586          136 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (353)
Q Consensus       136 ~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~~~  215 (353)
                      .-+++|+|+++.++-.. ++ ..+++.+.++  .|  ++.+..                ..+       .+.|.+|+.  
T Consensus        17 ~~~a~~~E~~~~n~~~~-~i-iGi~i~~~~~--~~--~i~~~~----------------~~~-------~~~l~~~l~--   65 (171)
T d2hhva1          17 DKAALVVEVVEENYHDA-PI-VGIAVVNEHG--RF--FLRPET----------------ALA-------DPQFVAWLG--   65 (171)
T ss_dssp             SEEEEEEECCSSSCTTC-CC-CEEEEEETTE--EE--EECHHH----------------HTT-------CHHHHHHHH--
T ss_pred             CCeEEEEEcCCCccccC-eE-EEEEEEECCC--EE--EEechh----------------hhh-------HHHHHHHHh--
Confidence            34699999999764332 33 3566644443  22  221110                000       034677783  


Q ss_pred             CCCcccccCCCCCcEEEecccHHHHHHhc---CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCC------
Q 018586          216 ESTGRLMLDDGKARLLVGHGLEHDLDSLR---MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG------  286 (353)
Q Consensus       216 ~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~------  286 (353)
                                +.....|+||+.+|+.+|.   +..+ ..+.||+..+..+.|....++|+.|++.|++..+...      
T Consensus        66 ----------~~~~~ki~hn~K~d~~~L~~~gi~~~-~~~fDt~laayll~p~~~~~~L~~la~~yl~~~~~~~e~~~gk  134 (171)
T d2hhva1          66 ----------DETKKKSMFDSKRAAVALKWKGIELC-GVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGK  134 (171)
T ss_dssp             ----------CTTSEEEESSHHHHHHHHHTTTCCCC-CEEEEHHHHHHHHCGGGCCCSHHHHHHTTTCCSSCCHHHHHCS
T ss_pred             ----------CccceeeccchHHHHHHHHHCCCCCc-cccccHHHHHHHhcCCcccccHHHHHHHHcCCCCccceeccCc
Confidence                      3567899999999999998   2232 3467999999999898889999999999988876421      


Q ss_pred             ------------CCChHHHHHHHHHHHHHHHhchhh
Q 018586          287 ------------VHDPYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       287 ------------~H~Al~Da~~t~~l~~~~~~~~~~  310 (353)
                                  .--|..||.++.+|+..+.++..+
T Consensus       135 g~k~~~~~~~~~~~yaa~da~~~~~L~~~l~~~L~e  170 (171)
T d2hhva1         135 GAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRR  170 (171)
T ss_dssp             GGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                        112577899999999999887643

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=1.1e-06  Score=49.76  Aligned_cols=29  Identities=34%  Similarity=0.539  Sum_probs=26.5

Q ss_pred             CCceeecc--ccccccChHHHHHHHhhhcCCCC
Q 018586           12 TARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        12 ~k~~~C~~--C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      +|||.|+.  |+++|...++|.+|+++  |+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~--Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKS--HQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG--GTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhh--ccCC
Confidence            68999988  99999999999999999  8753

>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exosome complex exonuclease RRP6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.04  E-value=5.6e-06  Score=72.54  Aligned_cols=82  Identities=21%  Similarity=0.225  Sum_probs=65.0

Q ss_pred             CCcEEEecccHHHHHHhc--CcCCCCceeecccccCCcccCCCCCcHHHHHHHHhCCcCCCC------C---------CC
Q 018586          227 KARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG------V---------HD  289 (353)
Q Consensus       227 ~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~------~---------H~  289 (353)
                      .+-+-||||+.+|+.+|.  ++.....++||+..+..+  +..+.+|+.|++.|+|+.+...      .         +-
T Consensus       156 ~~I~KV~H~~~~Di~~L~~~~g~~~~n~fDT~~aa~~l--~~~~~sL~~L~~~yl~~~ldK~~q~SdW~~RPLs~~qi~Y  233 (292)
T d2hbka2         156 PSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAI--GLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAA  233 (292)
T ss_dssp             TTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHH--TCSCCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHH
T ss_pred             cCeEEEeechHhhhhhhhhcccccccchHHHHHHHHHh--CccccchHHHHHHhhhhcccccccccccccCcCCHHHHHH
Confidence            556889999999999997  333345689999887766  3457899999999999987644      1         34


Q ss_pred             hHHHHHHHHHHHHHHHhchhh
Q 018586          290 PYEDCVSVMRLYKRFRRQDHQ  310 (353)
Q Consensus       290 Al~Da~~t~~l~~~~~~~~~~  310 (353)
                      |..||..+..||..+.++..+
T Consensus       234 Aa~Da~~Ll~ly~~L~~~L~~  254 (292)
T d2hbka2         234 ARADTHFLLNIYDQLRNKLIE  254 (292)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999988655

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=7.4e-07  Score=49.75  Aligned_cols=23  Identities=17%  Similarity=0.112  Sum_probs=21.1

Q ss_pred             ccccccccCchhHHHHHHHhcCC
Q 018586           82 NLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      +.|+|+|.+.++|++|+|+|+||
T Consensus         8 ~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           8 EGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             TTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCCCceECcHHHcCccccccCCC
Confidence            34999999999999999999986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=9.8e-07  Score=51.53  Aligned_cols=31  Identities=45%  Similarity=0.773  Sum_probs=28.8

Q ss_pred             eeecc--ccccccChHHHHHHHhhhcCCCCCC-ccc
Q 018586           15 HKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (353)
Q Consensus        15 ~~C~~--C~k~f~~~~~l~~H~~~~~h~~~~~-~C~   47 (353)
                      |.|+.  |+++|..+++|++|+++  |++++| .|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~--Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL--HSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH--HHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCe--eCCCCCEeCC
Confidence            78886  99999999999999999  999999 885

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=7.7e-07  Score=49.15  Aligned_cols=27  Identities=30%  Similarity=0.664  Sum_probs=25.0

Q ss_pred             Cceeecc--ccccccChHHHHHHHhhhcCCC
Q 018586           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSV   41 (353)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~h~~   41 (353)
                      |||.|+.  |+++|...++|.+|+++  |+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~--HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI--HTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH--HHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc--cCC
Confidence            6999987  99999999999999999  875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=6.7e-07  Score=55.74  Aligned_cols=24  Identities=13%  Similarity=0.163  Sum_probs=22.0

Q ss_pred             ccccccccCchhHHHHHHHhcCCC
Q 018586           82 NLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      +.|+++|...++|..|+++|+|+|
T Consensus        24 ~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          24 PGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCccccCchHHHhhcccccCCC
Confidence            449999999999999999999986

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=8.7e-07  Score=48.46  Aligned_cols=30  Identities=30%  Similarity=0.494  Sum_probs=27.8

Q ss_pred             cccccccccccCchhHHHHHHHhcCCCCCC
Q 018586           79 RGCNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (353)
Q Consensus        79 ~~C~~C~k~F~~~s~L~~H~~~h~~~k~~~  108 (353)
                      .+|..|||.|.+.-+|.+|.-.|+++|||.
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            369999999999999999999999999984

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.4e-06  Score=47.60  Aligned_cols=26  Identities=27%  Similarity=0.529  Sum_probs=24.2

Q ss_pred             Cceeecc--ccccccChHHHHHHHhhhcCC
Q 018586           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHS   40 (353)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~h~   40 (353)
                      |||.|+.  |+++|...++|++|+++  |+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~--HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT--HA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH--HC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh--cc
Confidence            6999988  99999999999999998  64

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4.6e-06  Score=42.36  Aligned_cols=26  Identities=50%  Similarity=0.827  Sum_probs=23.9

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCC
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSV   41 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~   41 (353)
                      |++|+.|++.|+.+..|+.|++.  |++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~--htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRC--HTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGG--CCC
T ss_pred             CCccchhhhHhcchhHHHHHhhc--cCC
Confidence            68999999999999999999998  875

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5.3e-06  Score=45.17  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=19.3

Q ss_pred             ccccccccCchhHHHHHHHhc
Q 018586           82 NLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      +.|||+|...++|++|+++|+
T Consensus         8 ~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           8 DGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             TTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCcCCCHHHHHHHHhhcc
Confidence            459999999999999999995

>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Hypothetical protein AT5G06450
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.76  E-value=1.1e-05  Score=67.27  Aligned_cols=90  Identities=17%  Similarity=0.145  Sum_probs=67.5

Q ss_pred             HHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhcCc--CCCCceeecccccCCccc--CCCCCcHHHHHHHHhCC
Q 018586          206 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN--YPDHMLRDTAKYRPLMKT--NLVSHSLKYLTRTYLGY  281 (353)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~--~~~~~~~Dt~~l~~~~~~--~~~~~~L~~l~~~~~~~  281 (353)
                      +.+.+|+            .+.+.+.||||+.+|+..|.-.  .....++|+..++.....  ...+++|+.|++.+||.
T Consensus        98 ~~L~~~L------------~~~~i~kVG~~i~~D~~~L~~~~gi~~~~~~Dl~~la~~~~~~~~~~~~gL~~L~~~~Lg~  165 (206)
T d1vk0a_          98 KDLYRFF------------ASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWS  165 (206)
T ss_dssp             HHHHHHH------------TCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCC
T ss_pred             HHHHHHh------------cCCCceEEEEeEHHHHHHHHHhcCCcccceEEchHHHHHhhcCCccccchHHHHHHHHhcc
Confidence            5677888            3467799999999999999833  223458998777665433  33568999999999999


Q ss_pred             cCCCCC---------------CChHHHHHHHHHHHHHHHhc
Q 018586          282 DIQSGV---------------HDPYEDCVSVMRLYKRFRRQ  307 (353)
Q Consensus       282 ~~~~~~---------------H~Al~Da~~t~~l~~~~~~~  307 (353)
                      .+....               +-|..||.++.+||..+.++
T Consensus       166 ~l~K~~~~~SnW~~pLs~~Qi~YAA~DA~~~~~i~~~L~~e  206 (206)
T d1vk0a_         166 DLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE  206 (206)
T ss_dssp             CCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCcceeecCCCCcCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            876531               23567999999999998763

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=2.8e-06  Score=46.83  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=20.1

Q ss_pred             ccccccccCchhHHHHHHHhcC
Q 018586           82 NLCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~~  103 (353)
                      +.|+|+|...++|.+|+++|+|
T Consensus         8 ~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           8 ESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             TTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCCCcEECchhHhhhhcCccCC
Confidence            4499999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=3.4e-06  Score=49.67  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=15.5

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|+.|+++|.+.++|..|+++|.
T Consensus        13 ~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_          13 QCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             EeCCCCCEecCHHHHHHHHhcCc
Confidence            35666677777777777777664

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=3.9e-06  Score=43.50  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=23.0

Q ss_pred             ccccccccccCchhHHHHHHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      .|.+|||+|..++.|++|+-+|+++
T Consensus         4 vc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccCC
Confidence            4889999999999999999999875

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=1.1e-05  Score=42.40  Aligned_cols=25  Identities=32%  Similarity=0.571  Sum_probs=23.9

Q ss_pred             CCceeeccccccccChHHHHHHHhh
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      +|||.|+.||+.|......++|.++
T Consensus         1 EkPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhh
Confidence            6899999999999999999999998

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=1.6e-05  Score=44.85  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             ccccccccCchhHHHHHHHhcCC
Q 018586           82 NLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      +.|+|+|+..++|.+|+++|+..
T Consensus         9 pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           9 PGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             TTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCCeeCCHHHHHHHhhhccCC
Confidence            45999999999999999999854

>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Archaeon Thermococcus gorgonarius [TaxId: 71997]

Probab=97.60  E-value=0.00019  Score=64.34  Aligned_cols=123  Identities=14%  Similarity=0.140  Sum_probs=79.0

Q ss_pred             cCCCceeeccCcccccc-CC-CCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHH
Q 018586          132 CRGPKAVAMDCEMVGGG-SN-GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  209 (353)
Q Consensus       132 ~~~~~~~~~D~Ettg~~-~~-~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~  209 (353)
                      .+..+.+++|+|+...+ .. ....+ ..+++.+..+..++..               -++....+.--.+..+++..|.
T Consensus       132 ~~~~r~~s~DIE~~~~~g~~~~~~~I-~~Is~~~~~~~~~~~~---------------~~~~~~~v~~~~~E~~lL~~f~  195 (347)
T d1tgoa1         132 DEELKMLAFDIETLYHEGEEFAEGPI-LMISYADEEGARVITW---------------KNIDLPYVDVVSTEKEMIKRFL  195 (347)
T ss_dssp             CCCCCEEEEEEEECCCSSSSTTCSCE-EEEEEEETTEEEEEES---------------SCCCCTTEEECSSHHHHHHHHH
T ss_pred             CCCceEEEEEEEeccCCCCCcccCcE-EEEEEecCCCcEEEEe---------------cCccCccceeeCCHHHHHHHHH
Confidence            45668999999998532 11 12233 4666666655543210               0111222334467888999999


Q ss_pred             HHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-------Cc----------------------CCCCceeeccccc
Q 018586          210 EILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MN----------------------YPDHMLRDTAKYR  259 (353)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~----------------------~~~~~~~Dt~~l~  259 (353)
                      +++.+.++           .+|+|||. .||+.+|.       +.                      .+....+|+..+.
T Consensus       196 ~~i~~~dP-----------Dii~g~N~~~FD~pyL~~R~~~~~i~~~~~r~~~~~~~~~~~~~~~~~i~Gr~~~D~~~~~  264 (347)
T d1tgoa1         196 KVVKEKDP-----------DVLITYNGDNFDFAYLKKRSEKLGVKFILGREGSEPKIQRMGDRFAVEVKGRIHFDLYPVI  264 (347)
T ss_dssp             HHHHHHCC-----------SEEEESSGGGTHHHHHHHHHHHTTCCCCCSTTSCCCEEEECSSSEEEECTTSEEEEHHHHH
T ss_pred             HHHhhcCc-----------cceeeccccCCchHHHHHHHHHhCCCCccccccCccceeccCceeEEecCCeEEeeHHHHH
Confidence            99965432           59999997 78999985       11                      1223367877766


Q ss_pred             CCcccCCCCCcHHHHHHHHhCCc
Q 018586          260 PLMKTNLVSHSLKYLTRTYLGYD  282 (353)
Q Consensus       260 ~~~~~~~~~~~L~~l~~~~~~~~  282 (353)
                      +... ...+|+|+.+|+.+||..
T Consensus       265 ~~~~-~l~sy~L~~va~~~l~~~  286 (347)
T d1tgoa1         265 RRTI-NLPTYTLEAVYEAIFGQP  286 (347)
T ss_dssp             HHHC-CCSCCCHHHHHHHHHSSC
T ss_pred             HHhc-ccccccHHHHHHHhcCCC
Confidence            5533 557899999999998876

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1e-05  Score=47.10  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=16.2

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|+.|+++|.+.++|+.|++.++
T Consensus        10 ~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2          10 ECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHS
T ss_pred             eCCCCcccccchHHHHHHccccc
Confidence            46777777777777777765544

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.9e-05  Score=39.66  Aligned_cols=27  Identities=30%  Similarity=0.546  Sum_probs=24.7

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCCC
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      .+-|.+||++|...+.|++|+.+  |+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lv--htge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLV--HTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGG--TSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhc--ccCC
Confidence            47899999999999999999999  8874

>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of T7 DNA polymerase
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.46  E-value=0.00016  Score=59.50  Aligned_cols=68  Identities=18%  Similarity=0.202  Sum_probs=42.3

Q ss_pred             eeeccCccccccCCCCccceeEEeeecCC-CCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcC
Q 018586          137 AVAMDCEMVGGGSNGTLDLCARVCLVDED-ENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  215 (353)
Q Consensus       137 ~~~~D~Ettg~~~~~~~~il~~v~ivd~~-g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~~~~~~  215 (353)
                      ++++|+||+|+.++.. .+ --+++.+.+ +++.  ++ .+                +      ...+.++++.+++.  
T Consensus         1 il~~DIET~gl~~~~~-~I-~ci~~~d~~~~~~~--~~-~~----------------~------~~~~~l~~~~~~l~--   51 (204)
T d1x9ma1           1 MIVSDIEANALLESVT-KF-HCGVIYDYSTAEYV--SY-RP----------------S------DFGAYLDALEAEVA--   51 (204)
T ss_dssp             CEEEEEEESSCGGGCC-CE-EEEEEEETTTTEEE--EE-CG----------------G------GHHHHHHHHHHHHH--
T ss_pred             CEEEEecCCCCCCCCC-EE-EEEEEEECCCCeEE--EE-eC----------------C------CchhHHHHHHHHHh--
Confidence            4789999999854322 22 233444443 3332  11 01                0      23567788888884  


Q ss_pred             CCCcccccCCCCCcEEEecc-cHHHHHHhc
Q 018586          216 ESTGRLMLDDGKARLLVGHG-LEHDLDSLR  244 (353)
Q Consensus       216 ~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~  244 (353)
                                 ...+||||| ..||+.+|+
T Consensus        52 -----------~~D~ivghN~~~FD~P~L~   70 (204)
T d1x9ma1          52 -----------RGGLIVFHNGHKYDVPALT   70 (204)
T ss_dssp             -----------TTCCEEESSTTTTHHHHHH
T ss_pred             -----------cCCEEEEEccccccHHHHH
Confidence                       345899999 679999997

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=1.4e-05  Score=40.58  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=21.1

Q ss_pred             ccccccccccCchhHHHHHHHhcC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~  103 (353)
                      .|+.|+|.|+.+..|+.|+|.|+|
T Consensus         3 kc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             ccchhhhHhcchhHHHHHhhccCC
Confidence            488899999999999999998875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=3.3e-05  Score=41.10  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=26.1

Q ss_pred             CCceeeccccccccChHHHHHHHhhhcCCCC
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      +|||+|+.|+..|+.+..+.-|.+.  |.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrs--hdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRS--HDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH--HSCC
T ss_pred             CCCcccchHHHHhhccccceEeeec--ccCc
Confidence            5899999999999999999999998  6653

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=5.3e-05  Score=41.26  Aligned_cols=30  Identities=33%  Similarity=0.489  Sum_probs=27.7

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~~   44 (353)
                      |...|+.||+.|.....|++|...  |++++|
T Consensus         4 k~~~ce~cgk~frdvyhlnrhkls--hs~ekp   33 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLS--HSGEKP   33 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG--SCSCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcc--cCCCCC
Confidence            567899999999999999999998  999887

>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: CAF1-like ribonuclease
domain: Pop2 RNase D domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=0.00024  Score=61.64  Aligned_cols=161  Identities=16%  Similarity=0.179  Sum_probs=93.3

Q ss_pred             CCCceeeccCccccccCC-----------------------CCccceeEEeeecCCCCe--------EEeeeccCCCC-c
Q 018586          133 RGPKAVAMDCEMVGGGSN-----------------------GTLDLCARVCLVDEDENV--------IFHTYVQPQLP-V  180 (353)
Q Consensus       133 ~~~~~~~~D~Ettg~~~~-----------------------~~~~il~~v~ivd~~g~~--------~~~~lv~P~~~-i  180 (353)
                      ..-+||++|+|++|+...                       .++++  .+++.+.+|+.        .|+-++.+... .
T Consensus        33 ~~~~fvaiD~EF~Gi~~~~~~~~~~t~d~~Y~~lr~nvd~~~iiQl--Glt~f~~~g~~~~~~~~~w~FNF~f~~~~d~~  110 (286)
T d1uoca_          33 SQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQL--GLSLSDANGNKPDNGPSTWQFNFEFDPKKEIM  110 (286)
T ss_dssp             TTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEE--EEEEECTTCCCCSSSCSEEEEEBCCCTTCCCC
T ss_pred             hcCCEEEEeeeecCcccCCCCCCCCCHHHHHHHHHHhHhhcceeEE--eeeeecccCCCCCCCceEEEEEEEecCccccc
Confidence            345699999999996311                       12222  45666776652        24555555432 2


Q ss_pred             cccccc---cCCCCHhhh-cCCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEecccHHHHHHhc-----Cc-----
Q 018586          181 TNYRYE---VTGLTEEDI-KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-----MN-----  246 (353)
Q Consensus       181 ~~~~~~---~~GIt~e~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-----~~-----  246 (353)
                      ......   -+||.=+.. ..+.+..+..+.+..-   +       ....++..+|.++..+|+.+|-     -.     
T Consensus       111 ~~~Si~fL~~~G~DF~k~~~~GI~~~~F~~ll~~s---~-------l~~~~~~~wi~fhg~yD~~yl~k~l~~~~LP~~~  180 (286)
T d1uoca_         111 STESLELLRKSGINFEKHENLGIDVFEFSQLLMDS---G-------LMMDDSVTWITYHAAYDLGFLINILMNDSMPNNK  180 (286)
T ss_dssp             CHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTS---S-------CSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSH
T ss_pred             cHHHHHHHHHcCCChHHHHHcCCCHHHHHHHHHhc---c-------ccccCCcceEEecchHHHHHHHHHHhCCCCCCCH
Confidence            222222   267764443 3556655433333211   1       1112445555555568998876     11     


Q ss_pred             ----------CCCCceeecccccCCccc-------------CCCCCcHHHHHHHHhCCcCCCCCCChHHHHHHHHHHHHH
Q 018586          247 ----------YPDHMLRDTAKYRPLMKT-------------NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKR  303 (353)
Q Consensus       247 ----------~~~~~~~Dt~~l~~~~~~-------------~~~~~~L~~l~~~~~~~~~~~~~H~Al~Da~~t~~l~~~  303 (353)
                                +|.  ++||..+++....             ...+.+|..+++.+ +++-.+..|.|-.||.+|+.+|.+
T Consensus       181 ~eF~~~v~~~FP~--iyDtK~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ia~~l-~v~~~g~~HeAG~DSllT~~~F~~  257 (286)
T d1uoca_         181 EDFEWWVHQYMPN--FYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADEL-GLPRFSIFTTTGGQSLLMLLSFCQ  257 (286)
T ss_dssp             HHHHHHHHHHCSS--EEEHHHHHHHHTTTCC-------------CCSHHHHHHHT-TCCCCGGGGSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCc--ceeHHHHHHHhhccccccccchhhhhccccCCHHHHHHhc-CCCccCCCcchHHHHHHHHHHHHH
Confidence                      343  7898776643321             12356899999988 888444499999999999999999


Q ss_pred             HHhch
Q 018586          304 FRRQD  308 (353)
Q Consensus       304 ~~~~~  308 (353)
                      +.+..
T Consensus       258 l~~~~  262 (286)
T d1uoca_         258 LSKLS  262 (286)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            97643

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.0001  Score=37.49  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=24.2

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      +|+.|.|+|.++-.|+.|-|.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            48999999999999999999999985

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00013  Score=37.81  Aligned_cols=28  Identities=21%  Similarity=0.408  Sum_probs=25.7

Q ss_pred             CCceeeccccccccChHHHHHHHhhhcCCC
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~   41 (353)
                      ++||+|..|.......+.|..|++.  |++
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~--htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRS--HTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTT--CCS
T ss_pred             CCcceeeecccccCCchheEEeeec--ccC
Confidence            5899999999999999999999998  886

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00013  Score=38.08  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=23.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k  105 (353)
                      .|++||....-+|.|+.|.|+|++++
T Consensus         3 vC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           3 ICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             cccccCcccCCHHHHHHHHHHhcCCC
Confidence            48999999999999999999999874

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.95  E-value=0.0001  Score=36.90  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=21.0

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|..|.++|..+|.|.+|+|+|.
T Consensus         2 kcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           2 KCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             cccchHHHHHHHHHHHHHHHhhc
Confidence            48899999999999999999885

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00037  Score=35.82  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=24.4

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHS   40 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~   40 (353)
                      |||+|..|..+-...++|+.|+++  |+
T Consensus         2 kp~kck~cdyaaadsssl~kh~ri--hs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRI--HS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH--SC
T ss_pred             CCcccccccchhcchhhHhhhhhc--cc
Confidence            799999999999999999999999  75

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.87  E-value=0.00028  Score=36.72  Aligned_cols=25  Identities=28%  Similarity=0.497  Sum_probs=22.6

Q ss_pred             CCceeecc--ccccccChHHHHHHHhh
Q 018586           12 TARHKCVA--CYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        12 ~k~~~C~~--C~k~f~~~~~l~~H~~~   36 (353)
                      +.||+|++  |++.|...+.|++|.++
T Consensus         1 q~py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           1 QLPYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             TCCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CCCccCCccCccccccCHHHHhhhhhc
Confidence            35899987  99999999999999987

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00021  Score=37.92  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.5

Q ss_pred             ccccccccCchhHHHHHHHhcC
Q 018586           82 NLCMNIFDSPSSLIKHKEACSL  103 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~~  103 (353)
                      +.|+|+++++|+|+.|++.++|
T Consensus         8 ~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           8 PGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             TTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCcccCCHHHHHHHHHhhCC
Confidence            4599999999999999998764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00054  Score=39.38  Aligned_cols=27  Identities=22%  Similarity=0.459  Sum_probs=24.4

Q ss_pred             CCCCceeeccccccccChHHHHHHHhh
Q 018586           10 RSTARHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        10 ~~~k~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      +|-|||+|..|+|.|-...++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            578999999999999999999999863

>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.003  Score=57.15  Aligned_cols=148  Identities=15%  Similarity=0.192  Sum_probs=83.4

Q ss_pred             ccCCCceeeccCccccccCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHHHHHHHH
Q 018586          131 TCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  210 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v~~~~~~  210 (353)
                      ..++-+++++|+|+...  +.+    -.+.+.+.....++  .+.+...-..       ...-.+..-++..+++..|.+
T Consensus       145 ~~P~lkilsfDIE~~~~--~~~----~si~l~~~~~~~v~--~~~~~~~~~~-------~~~~~v~~~~~E~~LL~~F~~  209 (388)
T d1q8ia1         145 YRPPLKWVSIDIETTRH--GEL----YCIGLEGCGQRIVY--MLGPENGDAS-------SLDFELEYVASRPQLLEKLNA  209 (388)
T ss_dssp             CCCCCCEEEEEEEECTT--SCE----EEEEEEETTEEEEE--EESSCCSCCT-------TCSSEEEEESSHHHHHHHHHH
T ss_pred             CCCCceEEEEEEEEcCC--Cce----EEEEecCCCCCEEE--EEecCCCCCC-------CCceEEEEeCCHHHHHHHHHH
Confidence            34566899999999743  222    23344322222222  1122111000       001123445678899999999


Q ss_pred             HHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-----Cc---------------------------CCCCceeeccc
Q 018586          211 ILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MN---------------------------YPDHMLRDTAK  257 (353)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~---------------------------~~~~~~~Dt~~  257 (353)
                      ++.+.++           .+|+|||+ .||+.+|.     ..                           .+...++|...
T Consensus       210 ~i~~~dP-----------Dii~GyNi~~FDlpyL~~Ra~~~~i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~lD~~~  278 (388)
T d1q8ia1         210 WFANYDP-----------DVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIE  278 (388)
T ss_dssp             HHHHHCC-----------SEEEESSTTTTHHHHHHHHHHHTTCCCCCSSSSCCCEEEEECSSSCEEEEEBTTBEEEEHHH
T ss_pred             HHHHcCC-----------CEEEecCCCCCCHHHHHHHHHHhCCCchhhhcCCcceeEEccccccceeeecceEEEeehhH
Confidence            9965433           59999995 46999985     00                           11123456655


Q ss_pred             ccCCcccCCCCCcHHHHHHHHhCCcCCCC--------------------CCChHHHHHHHHHHHHHH
Q 018586          258 YRPLMKTNLVSHSLKYLTRTYLGYDIQSG--------------------VHDPYEDCVSVMRLYKRF  304 (353)
Q Consensus       258 l~~~~~~~~~~~~L~~l~~~~~~~~~~~~--------------------~H~Al~Da~~t~~l~~~~  304 (353)
                      +.+.......+|+|+.+++.+||..-...                    ..-.+.||..+.+|+.++
T Consensus       279 ~~k~~~~~~~sy~L~~Va~~~Lg~~K~~~~~~~~~~~~~~~~~~d~~~l~~Y~~~D~~Lv~~L~~k~  345 (388)
T d1q8ia1         279 ALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKT  345 (388)
T ss_dssp             HHHHSCCCCSCCCHHHHHHTTC------------CTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccccCHhHhhhhhhcccccccChhhhHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444446678999999999988652110                    011245899999998764

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00096  Score=34.73  Aligned_cols=28  Identities=21%  Similarity=0.416  Sum_probs=25.2

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCCCC
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~   43 (353)
                      .|.|+.||.....++-|+.|++.  |++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRs--HT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRT--HTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH--TSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHH--hcCCC
Confidence            37899999999999999999999  99864

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.00066  Score=34.44  Aligned_cols=26  Identities=31%  Similarity=0.499  Sum_probs=23.8

Q ss_pred             eeccccccccChHHHHHHHhhhcCCCCC
Q 018586           16 KCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (353)
Q Consensus        16 ~C~~C~k~f~~~~~l~~H~~~~~h~~~~   43 (353)
                      +|+.|.++|.++.-|+.|-+.  |++++
T Consensus         2 qcp~c~k~f~skyylkvhnr~--htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK--HTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH--HSSCC
T ss_pred             cCcchHHHHHHhHhhhhcccc--ccCCC
Confidence            599999999999999999999  88864

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.49  E-value=0.00086  Score=33.43  Aligned_cols=22  Identities=32%  Similarity=0.632  Sum_probs=20.8

Q ss_pred             eeeccccccccChHHHHHHHhh
Q 018586           15 HKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      |+|..|.++|..++.|.+|+++
T Consensus         1 ykcglcersfveksalsrhqrv   22 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRV   22 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHHh
Confidence            6899999999999999999998

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.001  Score=34.75  Aligned_cols=29  Identities=24%  Similarity=0.366  Sum_probs=24.7

Q ss_pred             CceeeccccccccChHHHHHHHhhhcCCCC
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      |||+|..|.......++|+.|+.+. |+.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktk-hske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTK-HSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH-TSSC
T ss_pred             CCccccccccccccchhhhhhhhcc-cccC
Confidence            6999999999999999999999863 5543

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0024  Score=33.74  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=22.3

Q ss_pred             Cceeecc--ccccccChHHHHHHHhh
Q 018586           13 ARHKCVA--CYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~   36 (353)
                      |||.|..  |+++++..++|..|++.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHh
Confidence            6899987  99999999999999986

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.00  E-value=0.0014  Score=37.46  Aligned_cols=27  Identities=22%  Similarity=0.396  Sum_probs=23.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCCCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~k~  106 (353)
                      .|..|++.|.+...|-.|++.|..++.
T Consensus         7 ~C~~C~k~F~s~qALGGH~~~Hr~~r~   33 (37)
T d1njqa_           7 TCSFCKREFRSAQALGGHMNVHRRDRA   33 (37)
T ss_dssp             ECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CCCCCCCccCCcccccchHhhhcchHH
Confidence            599999999999999999999976543

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0016  Score=34.83  Aligned_cols=28  Identities=25%  Similarity=0.431  Sum_probs=24.2

Q ss_pred             Cceeecc--ccccccChHHHHHHH-hhhcCCCC
Q 018586           13 ARHKCVA--CYKQFKRKDHLIEHM-KISYHSVH   42 (353)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~-~~~~h~~~   42 (353)
                      |||.|+.  |.|+|+..++-..|+ ++  |+.+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRT--Hs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRT--HSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHT--TCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccc--ccCC
Confidence            6999987  999999999999997 78  7653

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0035  Score=32.49  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=25.9

Q ss_pred             CCceeeccccccccChHHHHHHHhhhcCCCC
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      +..|.|..|...|.....|..|+..  |+++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvs--htge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVS--HTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH--HSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeec--ccCC
Confidence            4579999999999999999999988  8774

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0038  Score=32.41  Aligned_cols=23  Identities=39%  Similarity=0.647  Sum_probs=21.3

Q ss_pred             ceeeccccccccChHHHHHHHhh
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      ||.|..|.-+|..+.+|..|+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999999999999999999975

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0013  Score=35.12  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=19.9

Q ss_pred             cccccccccCchhHHHHH-HHhcCC
Q 018586           81 CNLCMNIFDSPSSLIKHK-EACSLS  104 (353)
Q Consensus        81 C~~C~k~F~~~s~L~~H~-~~h~~~  104 (353)
                      -+.|.|+|+..|....|+ |+|..+
T Consensus         7 ~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           7 HEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             STTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCChhhhhcchhhhhhhccccccCC
Confidence            456999999999999998 888753

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.0014  Score=34.15  Aligned_cols=23  Identities=17%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|..||+.|..+...++|.++|.
T Consensus         5 ~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           5 ACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHHGGGC
T ss_pred             ccchhhhhhhcchhhhhhhhhcc
Confidence            58899999999999999998884

>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.61  E-value=0.019  Score=52.00  Aligned_cols=155  Identities=15%  Similarity=0.141  Sum_probs=84.3

Q ss_pred             ccCCCceeeccCccccc------cCCCCccceeEEeeecCCCCeEEeeeccCCCCccccccccCCCCHhhhcCCCChHHH
Q 018586          131 TCRGPKAVAMDCEMVGG------GSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEV  204 (353)
Q Consensus       131 ~~~~~~~~~~D~Ettg~------~~~~~~~il~~v~ivd~~g~~~~~~lv~P~~~i~~~~~~~~GIt~e~l~~~~~~~~v  204 (353)
                      ..+..+++++|+|+...      ++......+..+++.+.+|....-.+ .... .......+.|   ..+..-.+..+.
T Consensus       182 ~~p~l~~lsfDIE~~~~~~~~fP~p~~~~~~ii~I~~~~~~~~~~v~~~-~~~~-~~~~~~~~~~---~~v~~~~sE~eL  256 (410)
T d1s5ja1         182 EIPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVL-NRND-VNEGSVKLDG---ISVERFNTEYEL  256 (410)
T ss_dssp             CCCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEE-CSSC-CCCCCEEETT---EEEEEESSHHHH
T ss_pred             CCCCceEEEEEEEECCCCCCCCCCccccCceEEEEEEEcccCCEEEEEE-ccCC-CccccccCCC---eEEEEECCHHHH
Confidence            35677899999998521      11112112246667666654422111 1111 1111111222   224445678999


Q ss_pred             HHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc-----CcCCC-----------------Cceeec------
Q 018586          205 KDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYPD-----------------HMLRDT------  255 (353)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~~-----------------~~~~Dt------  255 (353)
                      +.+|.+++.             .-.+|+|||. .||+.+|.     ++...                 ...+|.      
T Consensus       257 L~~F~~~i~-------------dpDii~GyN~~~FD~pyL~~Ra~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  323 (410)
T d1s5ja1         257 LGRFFDILL-------------EYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFN  323 (410)
T ss_dssp             HHHHHHHHT-------------TCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTS
T ss_pred             HHHHHhhhc-------------ccceEEEecccCCcHHHHHHHHHHhCCccccccccccCccceeEecceEEEecceeee
Confidence            999999993             2359999995 56999986     11110                 001111      


Q ss_pred             --ccccCCcccCCCCCcHHHHHHHHhCCcCCCCC------CC-------hHHHHHHHHHHHHHHH
Q 018586          256 --AKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV------HD-------PYEDCVSVMRLYKRFR  305 (353)
Q Consensus       256 --~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~------H~-------Al~Da~~t~~l~~~~~  305 (353)
                        ...++. .....+|+|+.+|+.+||.. ....      .+       .+.||..|.+|+.++.
T Consensus       324 d~~~~~~~-~~~l~sy~Ld~Va~~~Lg~~-K~d~~~~~~~~~~~~l~~Y~~~D~~L~~~L~~~~~  386 (410)
T d1s5ja1         324 KAVRNYAF-EGKYNEYNLDAVAKALLGTS-KVKVDTLISFLDVEKLIEYNFRDAEITLQLTTFNN  386 (410)
T ss_dssp             HHHHHHTS-TTCCSSCSHHHHHHHHHCCC-CC--SSCTTTCCHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred             hHHHHHhh-ccCCCCCCHHHHHHHHhCcC-cccCCCccccCCHHHHHHhhHHHHHHHHHHHhhhh
Confidence              111111 12456899999999998875 3221      11       2568888888866554

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.58  E-value=0.0055  Score=34.85  Aligned_cols=30  Identities=23%  Similarity=0.523  Sum_probs=26.2

Q ss_pred             CCceeeccccccccChHHHHHHHhhhcCCCCC
Q 018586           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (353)
Q Consensus        12 ~k~~~C~~C~k~f~~~~~l~~H~~~~~h~~~~   43 (353)
                      .+.|+|..|++.|.+-..|--|++.  |..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~--Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNV--HRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHT--TCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhh--hcchH
Confidence            4679999999999999999999998  76543

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.42  E-value=0.0031  Score=32.82  Aligned_cols=28  Identities=29%  Similarity=0.481  Sum_probs=24.4

Q ss_pred             Cceeecc--ccccccChHHHHHHHhhhcCCCC
Q 018586           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        13 k~~~C~~--C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      +||.|..  |.|.|.+...|.+|..+  |+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~t--htge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLT--HTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHH--HHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhcc--ccCC
Confidence            5888875  99999999999999998  8764

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.32  E-value=0.0036  Score=32.56  Aligned_cols=24  Identities=21%  Similarity=0.166  Sum_probs=21.3

Q ss_pred             cccccccccCchhHHHHHHHhcCC
Q 018586           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        81 C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      -..|.|.|..--+|.+|.-+|+|+
T Consensus         7 ~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           7 EEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             cccccccchhhhhhhhhhccccCC
Confidence            466999999999999999999875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0063  Score=32.09  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      +|+.|+..|..+..+..|.|.|.|.
T Consensus         5 ~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           5 SCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             EETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             ccchHHHHhhccccceEeeecccCc
Confidence            6889999999999999999999764

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.0068  Score=30.08  Aligned_cols=23  Identities=39%  Similarity=0.674  Sum_probs=20.6

Q ss_pred             CceeeccccccccChHHHHHHHh
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMK   35 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~   35 (353)
                      .||+|..|...|-.+.+|+.|+-
T Consensus         1 mpykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999874

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=94.89  E-value=0.0088  Score=31.84  Aligned_cols=27  Identities=37%  Similarity=0.624  Sum_probs=22.8

Q ss_pred             ceeeccccccccChHHHHHHHhhhcCCC
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKISYHSV   41 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~~~h~~   41 (353)
                      ||.|..|++.|....-|.+|+.. .|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK-lH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK-IHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT-TSCC
T ss_pred             CcccccccchhhHHHHHHHHHHH-HhcC
Confidence            79999999999999999999863 1665

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.009  Score=31.05  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             CceeeccccccccChHHHHHHHhh
Q 018586           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        13 k~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      +||+|..|.-..++.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            689999999989999999999863

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0071  Score=30.90  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=21.2

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|..|..+-.+.|+|..|+|+|.
T Consensus         5 kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           5 KCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHSC
T ss_pred             ccccccchhcchhhHhhhhhccc
Confidence            58899999999999999999996

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.22  E-value=0.012  Score=29.96  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=20.1

Q ss_pred             ceeeccccccccChHHHHHHHhh
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      ||+|..||+.+-.+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            78999999999999999988764

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.15  E-value=0.013  Score=30.24  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=22.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      .|..|...|..+-.|+.|+-.|+|+
T Consensus         6 tcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           6 TCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             EeHHHHHHHHHHHhheeeeecccCC
Confidence            4889999999999999999999875

>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.06  E-value=0.18  Score=44.41  Aligned_cols=94  Identities=15%  Similarity=0.104  Sum_probs=60.6

Q ss_pred             CChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhcCc-------------CC----------------
Q 018586          199 MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLRMN-------------YP----------------  248 (353)
Q Consensus       199 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~~~-------------~~----------------  248 (353)
                      .+-.+++..|.+++.+-+           ..+|+|||+ .||+.+|.-.             .+                
T Consensus       188 ~~E~~lL~~F~~~~~~~d-----------PDii~G~N~~~FD~pYL~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (372)
T d1noya_         188 DNERDMLMEYINLWEQKR-----------PAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSK  256 (372)
T ss_dssp             SCHHHHHHHHHHHHHHSC-----------CSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSC
T ss_pred             CCHHHHHHHHHHHHHHcC-----------CCEEEEEccCCcchHHHHHHHHHhccccchhhhhhcccccceeeecccccc
Confidence            688999999999995443           359999995 5699988700             00                


Q ss_pred             ------CCceeecccccC-CcccCCCCCcHHHHHHHHhCCcCCCCCCC----------------hHHHHHHHHHHHHHH
Q 018586          249 ------DHMLRDTAKYRP-LMKTNLVSHSLKYLTRTYLGYDIQSGVHD----------------PYEDCVSVMRLYKRF  304 (353)
Q Consensus       249 ------~~~~~Dt~~l~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~H~----------------Al~Da~~t~~l~~~~  304 (353)
                            ....+|...+.. .......+++|..++..++|.. ....+.                .+.||..+.+|+.++
T Consensus       257 ~~~~~~~~~~~d~~~~~~~~~~~~~~sy~L~~v~~~~l~~~-K~~~~~~l~~~~~~d~~~l~~Yni~D~~L~~~L~~kl  334 (372)
T d1noya_         257 EIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKG-KLPYDGPINKLRETNHQRYISYNIIDVESVQAIDKIR  334 (372)
T ss_dssp             EEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCC-CCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeccceEEEeehhheecccccchhhhhhhheeeccccC-CCCcchhHHHHHHhChhHhheecHHHHHHHHHHHHHH
Confidence                  011222222221 1123566899999999999887 332221                144888888888774

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.86  E-value=0.014  Score=30.15  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.3

Q ss_pred             ccccccccCchhHHHHHHHhc
Q 018586           82 NLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      ..|++.|..+|.|++|.++|.
T Consensus         9 egcdk~fs~ps~lkrhekvha   29 (29)
T d2j7ja2           9 EGCDKRFSLPSRLKRHEKVHA   29 (29)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCccccccCHHHHhhhhhccC
Confidence            359999999999999999883

>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Bacteriophage RB69 [TaxId: 12353]

Probab=93.54  E-value=0.27  Score=43.30  Aligned_cols=161  Identities=15%  Similarity=0.115  Sum_probs=90.6

Q ss_pred             cCCCceeeccCcccccc----CCCCccceeEEeeecCCCCe--EEeeeccCCCCccccc---------cccCCCCHhhhc
Q 018586          132 CRGPKAVAMDCEMVGGG----SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYR---------YEVTGLTEEDIK  196 (353)
Q Consensus       132 ~~~~~~~~~D~Ettg~~----~~~~~~il~~v~ivd~~g~~--~~~~lv~P~~~i~~~~---------~~~~GIt~e~l~  196 (353)
                      .+..+...+|+|+...+    +....+.+..+++.+.....  +|.....|.....+..         ....+...+...
T Consensus       105 ~~~~~~~~~DIE~~~~~~~p~~~~~~~~i~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  184 (375)
T d1ih7a1         105 HTKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIID  184 (375)
T ss_dssp             GGGSCEEEEEEEECCSSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCTTCCCCCCCHHHHHSCTTTTCCCCCHHHHT
T ss_pred             cccceeeeEEEEEecCccccCcccccccccceeeeeccCCeEEEEEecCCCcccccccccccccccccccccccccccCC
Confidence            44567889999986432    22222223566666654443  3444334433222111         111222222222


Q ss_pred             -----CCCChHHHHHHHHHHHhcCCCCcccccCCCCCcEEEeccc-HHHHHHhc--C------------c----------
Q 018586          197 -----NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR--M------------N----------  246 (353)
Q Consensus       197 -----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~--~------------~----------  246 (353)
                           .-.+-.+++..|.+++...+           -.||+|||. .||+..|-  +            .          
T Consensus       185 ~v~~~~~~sE~eLL~~F~~~~~~~d-----------PDiitGwN~~~FD~pYL~~R~~~~~~~~~~~~~~~~~~~~~~~~  253 (375)
T d1ih7a1         185 KIIYMPFDNEKELLMEYLNFWQQKT-----------PVILTGWNVESFDIPYVYNRIKNIFGESTAKRLSPHRKTRVKVI  253 (375)
T ss_dssp             TEEEEEESSHHHHHHHHHHHHHHSC-----------CSEEEETTTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEE
T ss_pred             CeEEEEcCCHHHHHHHHHHHHHhcC-----------CCEEEEcCCCCCCcHHHHHHHHhhhchhhhhhhhhcCCccEEEE
Confidence                 23678999999999995443           359999994 56999885  0            0          


Q ss_pred             -----------CCCCceeecccccCCc-ccCCCCCcHHHHHHHHhCCcCCCCC----CC------------hHHHHHHHH
Q 018586          247 -----------YPDHMLRDTAKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGV----HD------------PYEDCVSVM  298 (353)
Q Consensus       247 -----------~~~~~~~Dt~~l~~~~-~~~~~~~~L~~l~~~~~~~~~~~~~----H~------------Al~Da~~t~  298 (353)
                                 ......+|.+.+++.. .....+++|..++..++|.. ....    ++            .+.||..+.
T Consensus       254 ~~~~~~~~~~~~~g~~~~D~~~~~~~~~~~~~~s~~l~~v~~~~l~~~-K~~~~~~~~~~~~~d~~~~~~Y~~~D~~L~~  332 (375)
T d1ih7a1         254 ENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVG-KLKYDGPISKLRESNHQRYISYNIIDVYRVL  332 (375)
T ss_dssp             ECSSCEEEEEEETTCEEEEHHHHHHHHSSCCCSCCSHHHHHHHHTCCC-CCCCSSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeccccceeccccceeeeHHHHHHHhhhccccchhhhHHHHHHhccc-cccCcccHHHHHHhChhHhhhhhHHHHHHHH
Confidence                       0112344555444333 23566899999999998776 3221    11            144888888


Q ss_pred             HHHHHH
Q 018586          299 RLYKRF  304 (353)
Q Consensus       299 ~l~~~~  304 (353)
                      +|+.++
T Consensus       333 ~L~~kl  338 (375)
T d1ih7a1         333 QIDAKR  338 (375)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887764

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.026  Score=31.02  Aligned_cols=25  Identities=20%  Similarity=0.337  Sum_probs=22.8

Q ss_pred             ccccccccccCchhHHHHHHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      .|+.=++.|.....|..|+|+|+||
T Consensus         9 ~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           9 GCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCCcchhHHHHHHHHhhcCCC
Confidence            4888889999999999999999986

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.028  Score=31.60  Aligned_cols=26  Identities=27%  Similarity=0.531  Sum_probs=23.1

Q ss_pred             CCCceee--ccccccccChHHHHHHHhh
Q 018586           11 STARHKC--VACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        11 ~~k~~~C--~~C~k~f~~~~~l~~H~~~   36 (353)
                      .+|||.|  +-|+.+|.....|..|...
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~K   30 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhh
Confidence            4799999  5699999999999999876

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.036  Score=28.19  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=21.1

Q ss_pred             ceeeccccccccChHHHHHHHhh
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      .|.|++|+.....+++|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            48999999999999999999984

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.39  E-value=0.046  Score=27.10  Aligned_cols=22  Identities=45%  Similarity=0.969  Sum_probs=20.4

Q ss_pred             eeeccccccccChHHHHHHHhh
Q 018586           15 HKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        15 ~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      |.|+.|-+.|..+.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999875

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.045  Score=27.92  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=21.2

Q ss_pred             ceeeccccccccChHHHHHHHhh
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      |-+|+.|..+.+++..|..|.++
T Consensus         2 pekc~ecsyscsskaalrvh~ri   24 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERI   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG
T ss_pred             CccCcccccccCcHHHHHHhhcc
Confidence            56899999999999999999998

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.027  Score=28.94  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=18.9

Q ss_pred             ccccccccccCchhHHHHHHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      +|..|..+-..+|.|..|.|.|+|+
T Consensus         5 kcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           5 KCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             ECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             eeeecccccCCchheEEeeecccCc
Confidence            3566666667888899999988864

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.61  E-value=0.045  Score=29.70  Aligned_cols=25  Identities=20%  Similarity=0.598  Sum_probs=21.6

Q ss_pred             ccccccccccCchhHHHHHHHhcCC
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~~~  104 (353)
                      .|..|||+|+.+..+.+|...++|.
T Consensus         6 vcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           6 VCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             ECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             eecccccchhcchHHHHHhhhcCCC
Confidence            4889999999999999998887763

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.12  E-value=0.079  Score=27.44  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=19.2

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      +|..|.....+.|+|+.|.++.+
T Consensus         4 ~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           4 QCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             cccccccccccchhhhhhhhccc
Confidence            57888888899999999988643

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.35  E-value=0.062  Score=31.73  Aligned_cols=23  Identities=26%  Similarity=0.637  Sum_probs=20.2

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|..|||.|++.+.|+.|.--|.
T Consensus         8 pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           8 PCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eccccccccCCHHHHhHhHHhcC
Confidence            48899999999999999987774

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.07  E-value=0.062  Score=27.70  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=17.1

Q ss_pred             ccccccccccCchhHHHHHHHh
Q 018586           80 GCNLCMNIFDSPSSLIKHKEAC  101 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h  101 (353)
                      .|..|.-+|..+.+|+.|++..
T Consensus         3 ~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           3 HCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             ECSSSSCEESSHHHHHHHHHSS
T ss_pred             ccceeeeeEeeccchhHhhhhh
Confidence            4777888888888888888754

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.49  E-value=0.056  Score=27.58  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             ccccccccccCchhHHHHHHHhc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      +|++|..+..++..|+.|.|+|-
T Consensus         4 kc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGGC
T ss_pred             cCcccccccCcHHHHHHhhcccc
Confidence            58899999999999999999884

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=0.15  Score=27.56  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=20.6

Q ss_pred             ceeeccccccccChHHHHHHHhh
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      .|.|..|||+|.....+.+|-..
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            48899999999999999999875

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.03  E-value=0.17  Score=28.69  Aligned_cols=22  Identities=32%  Similarity=0.732  Sum_probs=17.0

Q ss_pred             ccccccccccCchhHHHHHHHh
Q 018586           80 GCNLCMNIFDSPSSLIKHKEAC  101 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~h  101 (353)
                      .|..|+|.|..+.++.+|...+
T Consensus         7 eC~~C~KrFMWRDSF~RH~~~C   28 (44)
T d2csha2           7 ECNICAKRFMWRDSFHRHVTSC   28 (44)
T ss_dssp             ECSSSCCEESCHHHHHHHHHHH
T ss_pred             eccchhhhhhhHHHHHHhhhhh
Confidence            5788888888888888886543

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=0.12  Score=26.34  Aligned_cols=20  Identities=25%  Similarity=0.451  Sum_probs=17.2

Q ss_pred             cccccccCchhHHHHHHHhc
Q 018586           83 LCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        83 ~C~k~F~~~s~L~~H~~~h~  102 (353)
                      .|+|.|.+.|.++.|..+|.
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            49999999999999987773

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.85  E-value=0.18  Score=25.32  Aligned_cols=21  Identities=19%  Similarity=0.297  Sum_probs=18.7

Q ss_pred             ccccccccCchhHHHHHHHhc
Q 018586           82 NLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      ..|+|+|.....|+.|+-+|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            569999999999999999886

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=85.80  E-value=0.14  Score=27.10  Aligned_cols=23  Identities=35%  Similarity=0.665  Sum_probs=19.1

Q ss_pred             ccccccccccCchhHHHHHHH-hc
Q 018586           80 GCNLCMNIFDSPSSLIKHKEA-CS  102 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~~-h~  102 (353)
                      .|..|++.|..+.-|-+|++. |.
T Consensus         3 ~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           3 PCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             ECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             ccccccchhhHHHHHHHHHHHHhc
Confidence            488999999999999999774 44

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.42  E-value=0.13  Score=27.50  Aligned_cols=20  Identities=40%  Similarity=0.609  Sum_probs=16.7

Q ss_pred             ccccccccccCchhHHHHHH
Q 018586           80 GCNLCMNIFDSPSSLIKHKE   99 (353)
Q Consensus        80 ~C~~C~k~F~~~s~L~~H~~   99 (353)
                      .|+.||-.|.+.|.|..||.
T Consensus        10 ~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1          10 MCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             BCTTTCCBCSCHHHHHHHTT
T ss_pred             eccccceeecChhHHHhhhh
Confidence            48889999999999988863

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.14  E-value=0.28  Score=25.19  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             ceeeccccccccChHHHHHHHhh
Q 018586           14 RHKCVACYKQFKRKDHLIEHMKI   36 (353)
Q Consensus        14 ~~~C~~C~k~f~~~~~l~~H~~~   36 (353)
                      -|.|.+||+...+...++-|+..
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            47899999999998888888875

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.96  E-value=0.19  Score=28.08  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.8

Q ss_pred             ccccccccCchhHHHHHHHhc
Q 018586           82 NLCMNIFDSPSSLIKHKEACS  102 (353)
Q Consensus        82 ~~C~k~F~~~s~L~~H~~~h~  102 (353)
                      +.|+.+|....+|..|+..|.
T Consensus        12 pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_          12 PGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TTTCCEESSHHHHHHHHHHHH
T ss_pred             CCccccccchHHHHHhhhhhe
Confidence            679999999999999998884

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.15  E-value=0.16  Score=27.73  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=18.8

Q ss_pred             ccccccccChHHHHHHHhhhcCCCC
Q 018586           18 VACYKQFKRKDHLIEHMKISYHSVH   42 (353)
Q Consensus        18 ~~C~k~f~~~~~l~~H~~~~~h~~~   42 (353)
                      +.=++.|.....|..|++.  |+++
T Consensus        11 ~R~~~pf~a~YkLv~H~R~--HTgE   33 (33)
T d2glia2          11 SRELRPFKAQYMLVVHMRR--HTGE   33 (33)
T ss_dssp             TTTTCCCSSHHHHHHHTHH--HHCC
T ss_pred             CCCCCcchhHHHHHHHHhh--cCCC
Confidence            3345679999999999999  8875

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.50  E-value=0.33  Score=26.23  Aligned_cols=27  Identities=15%  Similarity=0.407  Sum_probs=23.8

Q ss_pred             CCCceeeccccccccChHHHHHHHhhh
Q 018586           11 STARHKCVACYKQFKRKDHLIEHMKIS   37 (353)
Q Consensus        11 ~~k~~~C~~C~k~f~~~~~l~~H~~~~   37 (353)
                      |+-.|.|..|.+.+...+++-+|-.++
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhh
Confidence            556899999999999999999998764