Citrus Sinensis ID: 018603

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
MVNGSSSESAVQVNARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSSLPLECTVDPRVDPIAQSVRADGRTCKIIRVRPNRPNMKFPEGSSVLHRDNQWVAWTDGSQSN
Secondary Structure (PSIPRED)
ccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEcccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccEEEEEEEccccccEEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccEEccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccEcccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEccccccccEEEEEEEEccEEcccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccEEEEEccccccccEEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHcccccHHccccccccccEEccccccccccHHHccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEcccccEEEEEccEEEEEEcccccc
Coil and Loop (DISEMBL)
MVNGSSSESAVQVnaretdrttqVNATISTVndvhksrdmQHLYKNQLQSytqkknlplpmysceregpphasrfkckvtidgqtyeshqffptlKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYalpvyntkqsgeshaptfVSTVEvggevfsgqgakskKQAEMSAAKVAYMRlkepnpsqgpalvspdiqaqadysssslqsnvtaDLHHNIQTagrlvfnpnsmpkVQAEEIRELTTVNtevagydlsqfpqpefssssdlsassgvekgmpssslplectvdprvdpiaqsvradgrtckiirvrpnrpnmkfpegssvlhrdnqwvawtdgsqsn
Flexible Loop (DISEMBL)
mvngsssesAVQVnaretdrttqvnatistvndvhksrDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVfsgqgakskkqAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAgrlvfnpnSMPKVQAEEIRELTTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSSLPLECTVDPRVDpiaqsvradgrtckiirvrpnrpnmkfpegssvlhrdnqwvawtdgsqsn
Low Complexity Region (SEG)
MVNGSSSESAVQVNARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVAGYDLsqfpqpefssssdlsassGVEKGMPSSSLPLECTVDPRVDPIAQSVRADGRTCKIIRVRPNRPNMKFPEGSSVLHRDNQWVAWTDGSQSN
Disordered region (IsUnstruct)
*************************************************************************RFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNT**********FV*TV******************************************************************HNIQTAGRLVF***************LTTVNTEVAG*************************************************RADGRTCKIIRV******************DNQWVAW*******
Disordered Region (DISOPRED)
****************************************QHLYKNQLQSYTQKKNLPLPMYSCE*EGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS******K**AEMSAAKVAYMR*********************************************************************************************************************************************KFPEGSSVLHRDNQWVAWTDG****
Disordered Region (DISEMBL)
********************TTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS**************AKVAYMRLKE********LVSPDIQA**********SNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVAGYDLSQFP***********************SLPLECTVDPRVDPIAQSVRADGRTCKIIRVRPNRPNMKFPEGSSVLHRDNQWVAWTDGSQSN
Disordered Region (DISPRO)
*********A****ARETD******************RDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE****************************************************VQ*******T***********************************************************DGRTCKIIRVRPNRPNMKFPEGSSVLHRDNQWVAWTDG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVNGSSSESAVQVNARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPKVQAEEIRELTTVNTEVAGYDLSQFPQPEFSSSSDLSASSGVEKGMPSSSLPLECTVDPRVDPIAQSVRADGRTCKIIRVRPNRPNMKFPEGSSVLHRDNQWVAWTDGSQSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
Q8H1D4	355	Double-stranded RNA-bindi	no	no	0.847	0.842	0.374	5e-49
Q9SKN2	434	Double-stranded RNA-bindi	no	no	0.419	0.341	0.477	5e-33
B7E321	404	Double-stranded RNA-bindi	yes	no	0.424	0.371	0.471	6e-33
Q5N8Z0	441	Double-stranded RNA-bindi	yes	no	0.424	0.340	0.5	9e-33
Q9LJF5	359	Double-stranded RNA-bindi	no	no	0.419	0.412	0.464	2e-32
Q0DKP4	593	Double-stranded RNA-bindi	yes	no	0.419	0.249	0.470	2e-32
Q8GY79	393	Double-stranded RNA-bindi	no	no	0.419	0.376	0.451	3e-31
Q9AV50	514	Double-stranded RNA-bindi	no	no	0.419	0.287	0.477	6e-28
O04492	419	Double-stranded RNA-bindi	no	no	0.453	0.381	0.375	3e-21
Q0IV63	473	Double-stranded RNA-bindi	no	no	0.410	0.306	0.391	4e-21

>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana GN=DBR4 PE=1 SV=1

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 195/358 (54%), Gaps = 59/358 (16%)

Query: 40  MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 99
           M H+YK QLQ+Y  + NL LP+Y+ EREGPPHA RF+C VT  GQT++S +FFPTLK AE
Sbjct: 1   MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60

Query: 100 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 159
           H AAK+A+ SL+    +  D V YKN+LQE+AQKE+  LP Y T  SG SHAPTF STVE
Sbjct: 61  HAAAKIAVASLTPQSPEGID-VAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVE 119

Query: 160 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQS 217
             G+VFSG+ AK+KK AEMSAAKVA+M +K  N +Q   P L S   + Q D +S+   S
Sbjct: 120 FAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS 176

Query: 218 NVTADLHHNIQTAGRLVFNPNSMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEF 271
               ++H   Q + ++V  P++     KV  +E  +L      N +     L++   P  
Sbjct: 177 --PQEIHS--QPSSKVVMTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTN 232

Query: 272 SSSSDLSASSGVEKGMPSSSLPLE------CTVD-PRVDPIAQSVRA-----------DG 313
             +     + G++  + SSSLP+        T++ P  + I +++ A           DG
Sbjct: 233 DGTLSALTTDGMKMNIASSSLPIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDG 292

Query: 314 ---RTCKI----------------------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 346
               +C +                      +  RP  P +  P+ + +L RD++++A+
Sbjct: 293 SETSSCVVDESEKKKLIMGTGHLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 350

Double-stranded RNA-binding protein involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the trans-acting small interfering RNAs (ta-siRNAs) biogenesis by binding and assisting DICER-LIKE 4 (DCL4). Required for DCL4 activity. Required for the 21 nucleotide ta-siRNAs production of the TAS3 transcript in leaves but not in flowers. Plays an important role in silencing RNA of both DNA and RNA viruses. Involved with argonaute 7 (AGO7) and RDR6 in turnip crinkle virus (TCV) silencing. May not be directly involved in viral siRNA production. May stabilize the 21 nucleotide viral siRNAs and deliver them to the RISC complex. Targeted by the viral silencing suppressor (VSR) transactivator/viroplasmin (TAV) protein of the cauliflower mosaic virus (CaMV) that inactivates DRB4 function in RNA silencing. Probably not involved in the guide strand selection from RNA duplexes. Involved in leaf morphology through its function in ta-siRNA-mediated silencing.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1

 Score =  142 bits (357), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 98/155 (63%), Gaps = 7/155 (4%)

Query: 43  LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
           +YKNQLQ   Q+    LP Y+C REGP HA RFK  V  +G+ +ES Q+  TL++AEH A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 103 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
           A+VAL +L       SL     D++ +YKN+LQE+AQ+    LP Y T +SG  H P F 
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
            TVE+ G  F+G  AK+KKQAE +AA  A+  LK+
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQ 155

Binds double-stranded RNA. May be involved in RNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp. japonica GN=DRB5 PE=2 SV=1

 Score =  141 bits (356), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 96/157 (61%), Gaps = 7/157 (4%)

Query: 43  LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
           +YKNQLQ   Q+    LP Y C REGP HA RFK  VT +G+T++      TL++AEH A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60

Query: 103 AKVALMSLSLDKFQQ-------DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
           A+VAL  LSL            D++ +YKN+LQE A +    LPVY T +SG  H+P F 
Sbjct: 61  AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120

Query: 156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 192
           STVE+ G  F+G  AK+KK AE +AA  A+  LK+ N
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQSN 157

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp. japonica GN=DRB1 PE=2 SV=1

 Score =  141 bits (355), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 99/154 (64%), Gaps = 4/154 (2%)

Query: 41  QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEH 100
           Q  YK+QLQ Y QKK   LP Y   REGP HASRFK  VT+DG+ +ES ++F T+KEAE 
Sbjct: 84  QSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAES 143

Query: 101 EAAKVALMSLSLDKFQQD----DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 156
            AAK+ALMSL  +    +      + YKN+LQELAQK  ++LPVY+T   G    P F S
Sbjct: 144 AAAKLALMSLPQEASSSEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203

Query: 157 TVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
           TV      F G+ A +KKQAEM+AA+VA+   ++
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFED 237

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=2 SV=1

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 98/155 (63%), Gaps = 7/155 (4%)

Query: 43  LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
           +YKNQLQ   Q+    LP Y+C REGP HA RFK  V  +G+ +ES  +  TL++AEH A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 103 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
           A+VAL +L       SL     D++ +YKN+LQE A +    LPVY + +SG  H PTF 
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
            TVE+ G  F+G+ AK+KKQAE +AA  A+  L++
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRK 155

Binds double-stranded RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 94/155 (60%), Gaps = 7/155 (4%)

Query: 43  LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
           +YKNQLQ   Q+    LP Y+C REGP HA RFK  V  +G+T+ES  F  TL+ AEH A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 103 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
           A+VAL  L       SL     D++ +YKN+LQE A +    LPVY T +SG  H P F 
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120

Query: 156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
            TVE+ G  F+G   K+KKQA+ +AA  A+  LK+
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQ 155

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 96/155 (61%), Gaps = 7/155 (4%)

Query: 43  LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
           +YKNQLQ   Q+    LP Y+C REGP HA RFK  V  +G+ +ES  +  TL++AEH A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 103 AKVALMSL-------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
           A+V+L  L       SL     D++ +YKN+LQE A +    LP+Y + +SG  H P F 
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
            TVE+ G  F+G+ AK+KKQAE +AA  A+  LK+
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKK 155

Binds double-stranded RNA. May be involved in RNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica GN=DRB6 PE=2 SV=1

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 98/155 (63%), Gaps = 7/155 (4%)

Query: 43  LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
           +YKNQLQ   Q+    LP Y+C REGP HA RFK  V  +G+ +ES  FF TL++AEH A
Sbjct: 1   MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60

Query: 103 AKVALM-------SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
           A+VAL        S SL     D++ +YKN+LQE+AQ+    LP Y T++SG  H P F 
Sbjct: 61  AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120

Query: 156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
            TVE+ G  F+G  AK+KKQAE +AA  A+  L++
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQ 155

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 8/168 (4%)

Query: 30  TVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESH 89
           T  DV       +++K++LQ Y QK  LP P+Y   +EGP H S F+  V +DG  Y S 
Sbjct: 2   TSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL 61

Query: 90  QFFPTLKEAEHEAAKVALMSLSL-DKFQQ------DDSVLYKNVLQELAQKEAYALPVYN 142
             F   K AE  AA+VAL  L+   +  Q       ++ L KN+LQE AQK  YA+P+Y 
Sbjct: 62  PGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQ 121

Query: 143 T-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 189
             K         F  TVE+GG  ++G   ++KK AE+SA + A + ++
Sbjct: 122 CQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQ 169

Double-stranded RNA-binding protein involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis by assisting DICER-LIKE 1 (DCL1) in the accurate processing from primary miRNAs (pri-miRNAs) to miRNAs in the nucleus. Forms a complex with SERRATE (SE) and DCL1 to promote accurate processing of pri-miRNAs by DCL1. Binds and assist DCL1 for accurate processing of precursor miRNAs (pre-miRNA). Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved with argonaute 1 (AGO1) in the guide strand selection from miRNA duplexes, presumably by directional loading of the miRNA duplex (guide stand and passenger strand) onto the RNA-induced silencing complex (RISC) for passenger strand degradation. Does not participate in sense transgene-induced post-transcriptional gene silencing (S-PTGS). Involved in several plant development aspects and response to hormones through its role in miRNAs processing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 11/156 (7%)

Query: 42  HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 101
           +++K++LQ Y QK  L  P Y   +EGP H   FK  V I+  +Y+S   F   K AE  
Sbjct: 32  YVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91

Query: 102 AAKVALMSL--------SLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 153
           AA+VALM +        ++   Q+  + L KN+LQE AQK  YA+P Y   +S    AP 
Sbjct: 92  AAEVALMEIVKSIPANANIPAVQE--TGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP- 148

Query: 154 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 189
           F+ TVE+GG  + G  A++KK AE+ AA+ A + ++
Sbjct: 149 FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
296085908	494	unnamed protein product [Vitis vinifera]	0.654	0.467	0.544	2e-54
224150739	330	predicted protein [Populus trichocarpa]	0.790	0.845	0.431	1e-52
449527097	247	PREDICTED: double-stranded RNA-binding p	0.427	0.611	0.664	4e-52
449446736	446	PREDICTED: uncharacterized protein LOC10	0.427	0.338	0.664	8e-52
238480134	329	double-stranded-RNA-binding protein 4 [A	0.847	0.908	0.397	3e-47
22331912	355	double-stranded-RNA-binding protein 4 [A	0.847	0.842	0.374	3e-47
18389232	355	unknown protein [Arabidopsis thaliana]	0.847	0.842	0.374	4e-47
224125924	240	predicted protein [Populus trichocarpa]	0.430	0.633	0.630	2e-46
7362760	345	putative protein [Arabidopsis thaliana]	0.818	0.837	0.365	3e-45
224146035	281	predicted protein [Populus trichocarpa]	0.492	0.619	0.537	3e-44

>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/237 (54%), Positives = 152/237 (64%), Gaps = 6/237 (2%)

Query: 5   SSSESAVQVNARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC 64
           SSS S +  N   T  T QV               MQHLYK QLQ+Y QK+NLPLPMYS 
Sbjct: 124 SSSASNIVNNVPATKGTLQVQIQ----ETCQTPEGMQHLYKTQLQTYAQKRNLPLPMYSF 179

Query: 65  EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYK 124
           E  GP H  RFK KVTI+ QTYES  FFPTLK+AEH AAK+ALMSLS   FQ+DD  +YK
Sbjct: 180 ESIGPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAAAKLALMSLSPAGFQEDDYGVYK 239

Query: 125 NVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 184
           N+LQE+A+KE Y LPVY+T++SG SH PTF+STVE+ GE F GQ AK+KK AEM+AAK A
Sbjct: 240 NLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAA 299

Query: 185 YMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNV--TADLHHNIQTAGRLVFNPNS 239
           Y  LKE   +     +SP  Q      SSS  S    TADL  NI +   LV  P++
Sbjct: 300 YTHLKERRSNLNHKSLSPSGQELRGVESSSFNSESSGTADLQQNIISKLTLVLKPSA 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa] gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 150/348 (43%), Positives = 199/348 (57%), Gaps = 69/348 (19%)

Query: 40  MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 99
           MQHL+KNQLQ+Y QK+N  LP+YSCER GPPHASRFKCKVT++GQTYES ++FPTL +AE
Sbjct: 1   MQHLFKNQLQTYAQKRNFTLPVYSCERVGPPHASRFKCKVTVNGQTYESQEYFPTLNKAE 60

Query: 100 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 159
             AAK ALMSL  +   ++D   YK++LQELAQ+E   LP Y T +SGE+H PTFVS VE
Sbjct: 61  LAAAKAALMSLLSNGV-EEDGFGYKSLLQELAQREGCGLPTYWTDKSGEAHVPTFVSKVE 119

Query: 160 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQ------------ 207
           + GE+F+GQGAK+KKQAEMSAAK+AY  L++   SQ P  +S   Q Q            
Sbjct: 120 IEGEIFTGQGAKTKKQAEMSAAKIAYTALQQRYSSQSPGFLSTSSQFQEAPRSSPLSPAR 179

Query: 208 ----------ADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSMPKV-----QAEEIRELT 252
                       +S S+L++ +TA L  NIQ            PK+     QAEE R  +
Sbjct: 180 QSQEAVQSETPQFSVSNLRAGLTAYLQQNIQ------------PKLPVSNEQAEEYRANS 227

Query: 253 TV---NTEVA--GYD-----LSQFPQPEFSSSS----DLSASSGVEKGMPSSSLPLECTV 298
            V   N  +A  G D      S  P P  + SS    DL++SS     +PS S P     
Sbjct: 228 VVSNHNPSIASPGQDSCSAMASITPSPAAAISSSPKHDLTSSS-----LPSDS-PTNLAT 281

Query: 299 DPRVDPIAQSVRADGRTCKIIRVRPNRPNMKFPEGSSVLH-RDNQWVA 345
              ++ + + +R        + + P+   M +P GS+VL   D++W A
Sbjct: 282 SSSIEFMVRGIR--------VLMHPSGTKMTYPAGSTVLPISDDKWAA 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527097|ref|XP_004170549.1| PREDICTED: double-stranded RNA-binding protein 4-like [Cucumis sativus]

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 123/152 (80%), Gaps = 1/152 (0%)

Query: 40  MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 99
           MQHLYKN+LQ+++QK+ L LPMY+CER+GPPHASRF+CKV IDG+TYES +F  TLK+AE
Sbjct: 1   MQHLYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAE 60

Query: 100 HEAAKVALMSLSLDKFQQD-DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV 158
           +  AKVALMSL  D  Q+D DS LYKN+LQE+AQK    LP Y+T QSGE H P FVSTV
Sbjct: 61  NAVAKVALMSLCQDGAQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFVSTV 120

Query: 159 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
           +VG E F G+ +++KKQAEMSAAKVAY  +KE
Sbjct: 121 KVGEENFEGKPSRTKKQAEMSAAKVAYFTIKE 152

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446736|ref|XP_004141127.1| PREDICTED: uncharacterized protein LOC101222879 [Cucumis sativus]

 Score =  210 bits (535), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 123/152 (80%), Gaps = 1/152 (0%)

Query: 40  MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 99
           MQHLYKN+LQ+++QK+ L LPMY+CER+GPPHASRF+CKV IDG+TYES +F  TLK+AE
Sbjct: 200 MQHLYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAE 259

Query: 100 HEAAKVALMSLSLDKFQQD-DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTV 158
           +  AKVALMSL  D  Q+D DS LYKN+LQE+AQK    LP Y+T QSGE H P FVSTV
Sbjct: 260 NAVAKVALMSLCQDGAQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFVSTV 319

Query: 159 EVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
           +VG E F G+ +++KKQAEMSAAKVAY  +KE
Sbjct: 320 KVGEENFEGKPSRTKKQAEMSAAKVAYFTIKE 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238480134|ref|NP_001154686.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana] gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana] gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/332 (39%), Positives = 188/332 (56%), Gaps = 33/332 (9%)

Query: 40  MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 99
           M H+YK QLQ+Y  + NL LP+Y+ EREGPPHA RF+C VT  GQT++S +FFPTLK AE
Sbjct: 1   MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60

Query: 100 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 159
           H AAK+A+ SL+    +  D V YKN+LQE+AQKE+  LP Y T  SG SHAPTF STVE
Sbjct: 61  HAAAKIAVASLTPQSPEGID-VAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVE 119

Query: 160 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQS 217
             G+VFSG+ AK+KK AEMSAAKVA+M +K  N +Q   P L S   + Q D +S+   S
Sbjct: 120 FAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS 176

Query: 218 NVTADLHHNIQTAGRLVFNPNSMP---KVQAEEIRELTTVNTEVAGYDLSQFPQPEFS-- 272
               ++H   Q + ++V  P++     KV  +E  +L       A        +PE    
Sbjct: 177 --PQEIHS--QPSSKVVMTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTN 232

Query: 273 ----SSSDLSASSGVEKGMP--SSSLPLE----------CTVD--PRVDPIAQSVRADGR 314
               S+    A++G+++ +   SS +P            C VD   +   I  +      
Sbjct: 233 DGTLSALTTDAANGIKRNIAACSSWMPQNPTNDGSETSSCVVDESEKKKLIMGTGHLSIP 292

Query: 315 TCKIIRVRPNRPNMKFPEGSSVLHRDNQWVAW 346
           T + +  RP  P +  P+ + +L RD++++A+
Sbjct: 293 TGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 324

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331912|ref|NP_191839.2| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana] gi|42572769|ref|NP_974480.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana] gi|75244610|sp|Q8H1D4.1|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName: Full=dsRNA-binding protein 4; Short=AtDRB4 gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana] gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana] gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 195/358 (54%), Gaps = 59/358 (16%)

Query: 40  MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 99
           M H+YK QLQ+Y  + NL LP+Y+ EREGPPHA RF+C VT  GQT++S +FFPTLK AE
Sbjct: 1   MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60

Query: 100 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 159
           H AAK+A+ SL+    +  D V YKN+LQE+AQKE+  LP Y T  SG SHAPTF STVE
Sbjct: 61  HAAAKIAVASLTPQSPEGID-VAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVE 119

Query: 160 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQS 217
             G+VFSG+ AK+KK AEMSAAKVA+M +K  N +Q   P L S   + Q D +S+   S
Sbjct: 120 FAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS 176

Query: 218 NVTADLHHNIQTAGRLVFNPNSMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEF 271
               ++H   Q + ++V  P++     KV  +E  +L      N +     L++   P  
Sbjct: 177 --PQEIHS--QPSSKVVMTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTN 232

Query: 272 SSSSDLSASSGVEKGMPSSSLPLE------CTVD-PRVDPIAQSVRA-----------DG 313
             +     + G++  + SSSLP+        T++ P  + I +++ A           DG
Sbjct: 233 DGTLSALTTDGMKMNIASSSLPIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDG 292

Query: 314 ---RTCKI----------------------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 346
               +C +                      +  RP  P +  P+ + +L RD++++A+
Sbjct: 293 SETSSCVVDESEKKKLIMGTGHLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 195/358 (54%), Gaps = 59/358 (16%)

Query: 40  MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 99
           M H+YK QLQ+Y  + NL LP+Y+ EREGPPHA RF+C VT  GQT++S +FFPTLK AE
Sbjct: 1   MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60

Query: 100 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 159
           H AAK+A+ SL+    +  D V YKN+LQE+AQKE+  LP Y T  SG SHAPTF STVE
Sbjct: 61  HAAAKIAVASLTPQSPEGID-VAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVE 119

Query: 160 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQS 217
             G+VFSG+ AK+KK AEMSAAKVA+M +K  N +Q   P L S   + Q D +S+   S
Sbjct: 120 FAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS 176

Query: 218 NVTADLHHNIQTAGRLVFNPNSMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEF 271
               ++H   Q + ++V  P++     KV  +E  +L      N +     L++   P  
Sbjct: 177 --PQEIHS--QPSSKVVVTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTN 232

Query: 272 SSSSDLSASSGVEKGMPSSSLPLE------CTVD-PRVDPIAQSVRA-----------DG 313
             +     + G++  + SSSLP+        T++ P  + I +++ A           DG
Sbjct: 233 DGTLSALTTDGMKMNIASSSLPIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDG 292

Query: 314 ---RTCKI----------------------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 346
               +C +                      +  RP  P +  P+ + +L RD++++A+
Sbjct: 293 SETSSCVVDESEKKKLIMGTGHLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa] gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/157 (63%), Positives = 123/157 (78%), Gaps = 5/157 (3%)

Query: 39  DMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEA 98
           DMQ L+K+QLQ+Y QK+N  LP+YSCER GPPH+SRFKCKVT++GQT+ES ++F TL +A
Sbjct: 83  DMQRLFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFKCKVTVNGQTFESLEYFSTLNKA 142

Query: 99  EHEAAKVALMSLSLD-----KFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPT 153
           EH AAK ALMSL  +      F   D   YKN+LQELAQ+E   LP Y+T +SGE+H PT
Sbjct: 143 EHAAAKAALMSLLPNGVEEVSFLFMDESGYKNLLQELAQREGCGLPTYSTNKSGEAHVPT 202

Query: 154 FVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
           F+STVE+ GE+F+GQGAK+KKQAEMSAAK AY  LK+
Sbjct: 203 FISTVEIEGEIFTGQGAKTKKQAEMSAAKTAYTALKQ 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana]

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 190/358 (53%), Gaps = 69/358 (19%)

Query: 40  MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 99
           M H+YK QLQ+Y  + NL LP+Y+ EREGPPHA RF+C VT  GQT++S +FFPTLK AE
Sbjct: 1   MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60

Query: 100 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 159
           H AAK+A +            V YKN+LQE+AQKE+  LP Y T  SG SHAPTF STVE
Sbjct: 61  HAAAKIAGI-----------DVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVE 109

Query: 160 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ--GPALVSPDIQAQADYSSSSLQS 217
             G+VFSG+ AK+KK AEMSAAKVA+M +K  N +Q   P L S   + Q D +S+   S
Sbjct: 110 FAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS---ERQEDVNSNVKSS 166

Query: 218 NVTADLHHNIQTAGRLVFNPNSMP---KVQAEEIRELTTV---NTEVAGYDLSQFPQPEF 271
               ++H   Q + ++V  P++     KV  +E  +L      N +     L++   P  
Sbjct: 167 --PQEIHS--QPSSKVVMTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTN 222

Query: 272 SSSSDLSASSGVEKGMPSSSLPLE------CTVD-PRVDPIAQSVRA-----------DG 313
             +     + G++  + SSSLP+        T++ P  + I +++ A           DG
Sbjct: 223 DGTLSALTTDGMKMNIASSSLPIPHNPTNVITLNAPAANGIKRNIAACSSWMPQNPTNDG 282

Query: 314 ---RTCKI----------------------IRVRPNRPNMKFPEGSSVLHRDNQWVAW 346
               +C +                      +  RP  P +  P+ + +L RD++++A+
Sbjct: 283 SETSSCVVDESEKKKLIMGTGHLSIPTGQHVVCRPWNPEITLPQDAEMLFRDDKFIAY 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa] gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 131/175 (74%), Gaps = 1/175 (0%)

Query: 11  VQVNARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPP 70
           ++++ ++ +RT   N   +          + HL+KNQLQ+Y QK+N   P+YSCER GPP
Sbjct: 103 LELDLQDANRTPLSNEAGAVAKTDESFGGILHLFKNQLQTYAQKRNFTRPVYSCERVGPP 162

Query: 71  HASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQEL 130
           HA RFKCKVT++GQTYES ++FPTL +AE+ AAK ALMSL  +  ++D+S  YKN+LQ++
Sbjct: 163 HAIRFKCKVTVNGQTYESREYFPTLSKAENAAAKAALMSLLPNGVEEDESG-YKNLLQDM 221

Query: 131 AQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY 185
           AQ+E   LP Y T++SGE+HAPTF+STVE+ G  F+G+ A++KKQAEMSAAK+AY
Sbjct: 222 AQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVNFTGKEARNKKQAEMSAAKIAY 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2081620	355	DRB4 "double-stranded-RNA-bind	0.705	0.701	0.444	1.6e-51
TAIR|locus:2163016	393	DRB5 "dsRNA-binding protein 5"	0.419	0.376	0.451	1.8e-31
TAIR|locus:2057491	434	DRB2 "dsRNA-binding protein 2"	0.456	0.370	0.446	2.6e-31
TAIR|locus:2829928	359	DRB3 "dsRNA-binding protein 3"	0.419	0.412	0.464	3.3e-31
TAIR|locus:2024407	419	HYL1 "HYPONASTIC LEAVES 1" [Ar	0.453	0.381	0.375	1.2e-21
UNIPROTKB|Q0IQN6	424	DRB8 "Double-stranded RNA-bind	0.436	0.363	0.398	1.6e-21
RGD|3402	513	Eif2ak2 "eukaryotic translatio	0.487	0.335	0.291	9e-07
UNIPROTKB|P19525	551	EIF2AK2 "Interferon-induced, d	0.492	0.315	0.278	1e-06
UNIPROTKB|I3L6S9	242	EIF2AK2 "Uncharacterized prote	0.492	0.719	0.282	1.3e-06
UNIPROTKB|A0JNE6	533	EIF2AK2 "Uncharacterized prote	0.484	0.320	0.275	2.1e-06

TAIR|locus:2081620 DRB4 "double-stranded-RNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
 Identities = 116/261 (44%), Positives = 156/261 (59%)

Query:    40 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 99
             M H+YK QLQ+Y  + NL LP+Y+ EREGPPHA RF+C VT  GQT++S +FFPTLK AE
Sbjct:     1 MDHVYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60

Query:   100 HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVE 159
             H AAK+A+ SL+    +  D V YKN+LQE+AQKE+  LP Y T  SG SHAPTF STVE
Sbjct:    61 HAAAKIAVASLTPQSPEGID-VAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVE 119

Query:   160 VGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNV 219
               G+VFSG+ AK+KK AEMSAAKVA+M +K  N +Q  +   P  + Q D +S+   S  
Sbjct:   120 FAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPS-ERQEDVNSNVKSS-- 176

Query:   220 TADLHHNIQTAGRLVFNPNSMPK---VQAEEIRELTTV---NTEVAGYDLXXXXXXXXXX 273
               ++H   Q + ++V  P++  K   V  +E  +L      N +     L          
Sbjct:   177 PQEIHS--QPSSKVVMTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNEPENPTNDG 234

Query:   274 XXXXXXXXGVEKGMPSSSLPL 294
                     G++  + SSSLP+
Sbjct:   235 TLSALTTDGMKMNIASSSLPI 255

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0060145 "viral gene silencing in virus induced gene silencing" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0070919 "production of siRNA involved in chromatin silencing by small RNA" evidence=IMP

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2163016 DRB5 "dsRNA-binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
 Identities = 70/155 (45%), Positives = 96/155 (61%)

Query:    43 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
             +YKNQLQ   Q+    LP Y+C REGP HA RFK  V  +G+ +ES  +  TL++AEH A
Sbjct:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query:   103 AKVALMSLS-------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
             A+V+L  LS       L     D++ +YKN+LQE A +    LP+Y + +SG  H P F 
Sbjct:    61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query:   156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
              TVE+ G  F+G+ AK+KKQAE +AA  A+  LK+
Sbjct:   121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKK 155

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2057491 DRB2 "dsRNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 75/168 (44%), Positives = 102/168 (60%)

Query:    43 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
             +YKNQLQ   Q+    LP Y+C REGP HA RFK  V  +G+ +ES Q+  TL++AEH A
Sbjct:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query:   103 AKVALMSLS-------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
             A+VAL +LS       L     D++ +YKN+LQE+AQ+    LP Y T +SG  H P F 
Sbjct:    61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query:   156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPD 203
              TVE+ G  F+G  AK+KKQAE +AA  A+  LK+       ++  P+
Sbjct:   121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPE 168

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0070919 "production of siRNA involved in chromatin silencing by small RNA" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2829928 DRB3 "dsRNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 72/155 (46%), Positives = 98/155 (63%)

Query:    43 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
             +YKNQLQ   Q+    LP Y+C REGP HA RFK  V  +G+ +ES  +  TL++AEH A
Sbjct:     1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query:   103 AKVALMSLS-------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
             A+VAL +LS       L     D++ +YKN+LQE A +    LPVY + +SG  H PTF 
Sbjct:    61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query:   156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
              TVE+ G  F+G+ AK+KKQAE +AA  A+  L++
Sbjct:   121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRK 155

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2024407 HYL1 "HYPONASTIC LEAVES 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 63/168 (37%), Positives = 90/168 (53%)

Query:    30 TVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESH 89
             T  DV       +++K++LQ Y QK  LP P+Y   +EGP H S F+  V +DG  Y S 
Sbjct:     2 TSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL 61

Query:    90 QFFPTLKEAEHEAAKVALMSLSLD-KFQQ------DDSVLYKNVLQELAQKEAYALPVYN 142
               F   K AE  AA+VAL  L+   +  Q       ++ L KN+LQE AQK  YA+P+Y 
Sbjct:    62 PGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQ 121

Query:   143 T-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK 189
               K         F  TVE+GG  ++G   ++KK AE+SA + A + ++
Sbjct:   122 CQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQ 169

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IMP

GO:0031054 "pre-miRNA processing" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0015030 "Cajal body" evidence=IDA

GO:0035198 "miRNA binding" evidence=IDA

GO:0010445 "nuclear dicing body" evidence=IDA

GO:0051607 "defense response to virus" evidence=RCA

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010589 "leaf proximal/distal pattern formation" evidence=IMP

UNIPROTKB|Q0IQN6 DRB8 "Double-stranded RNA-binding protein 8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 255 (94.8 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 65/163 (39%), Positives = 92/163 (56%)

Query:    42 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 101
             +++K++LQ Y QK  L  P Y   +EGP H   FK  V I+  +Y+S   F   K AE  
Sbjct:    32 YVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQS 91

Query:   102 AAKVALMSL--SLDKFQQDDSV----LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFV 155
             AA+VALM +  S+       +V    L KN+LQE AQK  YA+P Y   +S    AP F+
Sbjct:    92 AAEVALMEIVKSIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FI 150

Query:   156 STVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPA 198
              TVE+GG  + G  A++KK AE+ AA+ A + ++    S+G A
Sbjct:   151 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ--GQSEGSA 191

GO:0003725 "double-stranded RNA binding" evidence=IDA

RGD|3402 Eif2ak2 "eukaryotic translation initiation factor 2-alpha kinase 2" [Rattus norvegicus (taxid:10116)]

 Score = 142 (55.0 bits), Expect = 9.0e-07, P = 9.0e-07
 Identities = 56/192 (29%), Positives = 94/192 (48%)

Query:    39 DMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEA 98
             D    Y ++L  Y+Q   + +        GPPH  RF  +V I+ + +   +   + +EA
Sbjct:     4 DTPGFYVDKLNKYSQIHKVKIIYKEISVTGPPHDRRFTFQVIIEEREFPEGEG-RSKQEA 62

Query:    99 EHEAAKVALMSLS----LDKFQQ--DDSVL---YKNVLQELAQKEAYALPVYNTKQSGES 149
             ++ AAK+A+  L     +D      +  ++   Y  ++   AQKE   LPV       +S
Sbjct:    63 KNNAAKLAVEILDNENKVDSHTDASEQGLIEGNYIGLVNSFAQKEN--LPVNFELCDPDS 120

Query:   150 HAP-TFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQ 207
               P  F+   ++G   + +G GA +KK+A+  AAK AY +L E +PS+   + S      
Sbjct:   121 QLPHRFICKCKIGQTTYGTGFGA-NKKEAKQLAAKNAYQKLSEKSPSKTGFVTS----LS 175

Query:   208 ADYSSSS-LQSN 218
             +D+SSSS + SN
Sbjct:   176 SDFSSSSSITSN 187

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISO

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004715 "non-membrane spanning protein tyrosine kinase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006926 "virus-infected cell apoptotic process" evidence=ISO

GO:0009612 "response to mechanical stimulus" evidence=IEP

GO:0009636 "response to toxic substance" evidence=IMP

GO:0010033 "response to organic substance" evidence=IEP

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO

GO:0032496 "response to lipopolysaccharide" evidence=IMP

GO:0033197 "response to vitamin E" evidence=IPI

GO:0033689 "negative regulation of osteoblast proliferation" evidence=ISO;ISS

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0043330 "response to exogenous dsRNA" evidence=IEP

GO:0046777 "protein autophosphorylation" evidence=ISO

GO:0051607 "defense response to virus" evidence=IEA

UNIPROTKB|P19525 EIF2AK2 "Interferon-induced, double-stranded RNA-activated protein kinase" [Homo sapiens (taxid:9606)]

 Score = 142 (55.0 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 54/194 (27%), Positives = 93/194 (47%)

Query:    44 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
             +  +L +Y QK+ + L        GPPH  RF  +V IDG+ +   +   + KEA++ AA
Sbjct:    10 FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEG-RSKKEAKNAAA 68

Query:   104 KVALMSLSLDKFQQDDSVL-------------YKNVLQELAQKEAYALPVYNTKQSGESH 150
             K+A+  L+ +K      +L             Y  ++  +AQK+   +  Y    SG  H
Sbjct:    69 KLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVN-YEQCASGV-H 126

Query:   151 APT-FVSTVEVGGEVFS-GQGAKSKKQAEMSAAKVAYMR-LKEPNPSQGPALVSPDIQAQ 207
              P  F    ++G + +S G G+ +K++A+  AAK+AY++ L E    +   L S      
Sbjct:   127 GPEGFHYKCKMGQKEYSIGTGS-TKQEAKQLAAKLAYLQILSEETSVKSDYLSSGSFATT 185

Query:   208 ADYSSSSLQSNVTA 221
              +  S+SL ++  A
Sbjct:   186 CESQSNSLVTSTLA 199

GO:0005524 "ATP binding" evidence=IEA

GO:0051607 "defense response to virus" evidence=IEA

GO:0004715 "non-membrane spanning protein tyrosine kinase activity" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006926 "virus-infected cell apoptotic process" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IMP

GO:0033689 "negative regulation of osteoblast proliferation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0004674 "protein serine/threonine kinase activity" evidence=TAS

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0004694 "eukaryotic translation initiation factor 2alpha kinase activity" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0019048 "virus-host interaction" evidence=TAS

GO:0019054 "modulation by virus of host cellular process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0030683 "evasion or tolerance by virus of host immune response" evidence=TAS

UNIPROTKB|I3L6S9 EIF2AK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 134 (52.2 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 56/198 (28%), Positives = 92/198 (46%)

Query:    44 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
             Y  +L  Y QK ++ L      + GP H  RF  +V ID + +   +   + KEA++ AA
Sbjct:    10 YIEELNKYQQKNDVILKYRELCKTGPAHNLRFTYQVVIDEKEFPKAEG-RSKKEAKNAAA 68

Query:   104 KVAL----------MSLSLDKFQQDDSVLYKNVL---QELAQKEAYALPVYNTKQSGESH 150
             K+A            S SL      D  L +N +     ++QK+  ++  Y   + GE  
Sbjct:    69 KLAFEIINKEHKANSSSSLPTANPPDRQLTENYIGRINTISQKKNLSVN-YEPCEPGEDG 127

Query:   151 APTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLKEPN-----PSQGPAL--VSP 202
                F    ++G +V+ SG G+ +K++A+  AAK AY +L+  N     P     L   S 
Sbjct:   128 PEKFHYKCKIGRKVYGSGVGS-TKQEAKQLAAKQAYEKLQSENFMNADPPSSSCLSTASS 186

Query:   203 DIQAQADYSSSSLQSNVT 220
             DIQ+ +  +S+S   + T
Sbjct:   187 DIQSSSPTTSTSASESAT 204

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0033689 "negative regulation of osteoblast proliferation" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0006926 "virus-infected cell apoptotic process" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

UNIPROTKB|A0JNE6 EIF2AK2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 52/189 (27%), Positives = 89/189 (47%)

Query:    44 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
             Y  +L  Y QK  + +      + GPPH  RF  +V ID + Y   +   + KEA++ AA
Sbjct:    10 YIEELNKYQQKNGVEVRYCELAKTGPPHNFRFTYQVIIDDKEYPKAEG-RSKKEAKNAAA 68

Query:   104 KVALMSLSLD-KFQQDDSVLYKNV------------LQELAQKEAYALPVYNTKQSGESH 150
             K+AL  ++ D K     S L  N+            L  ++QK+   +     K  G+  
Sbjct:    69 KLALEIINKDRKSVSFSSQLTTNIPEGPPIENYIGRLNTISQKKNLCVTYEECKSKGDG- 127

Query:   151 APTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPDIQAQAD 209
                F    ++G E + SG G+ +K++A+  AAK+AY +++      G +    D++  + 
Sbjct:   128 PEGFHYICKIGQEEYGSGVGS-TKQEAKQLAAKLAYEKIESETMRDGFSAACGDVERNSP 186

Query:   210 -YSSSSLQS 217
               S+SS +S
Sbjct:   187 AVSTSSSES 195

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0033689 "negative regulation of osteoblast proliferation" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0006926 "virus-infected cell apoptotic process" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.26	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_6651000001 hypothetical protein (330 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	2e-18
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	1e-17
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	1e-16
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	2e-16
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	2e-15
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	2e-15
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	3e-15
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	3e-14
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	2e-13
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	4e-12
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	9e-12
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	1e-11
PRK12371	235	PRK12371, PRK12371, ribonuclease III; Reviewed	3e-05
PHA03103	183	PHA03103, PHA03103, double-strand RNA-binding prot	5e-04
TIGR04238	201	TIGR04238, seadorna_dsRNA, seadornavirus double-st	5e-04

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 78.1 bits (193), Expect = 2e-18
 Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 123 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSA 180
            K++LQELAQK    LP Y   ++ G  HAP F   V VGG     G+G  SKK+A+ +A
Sbjct: 2   PKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEG-SSKKEAKQNA 60

Query: 181 AKVAYMRL 188
           A+ A  +L
Sbjct: 61  AEAALRKL 68

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 75.8 bits (187), Expect = 1e-17
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 44  YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
            K+ LQ   QK+  PLP Y   E EGP HA RF  +VT+ G          + KEA+  A
Sbjct: 2   PKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGG-KITGEGEGSSKKEAKQNA 60

Query: 103 AKVALMSL 110
           A+ AL  L
Sbjct: 61  AEAALRKL 68

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 77.6 bits (192), Expect = 1e-16
 Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 123 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSA 180
           YK  LQE AQ     LP Y   K+ G  H   F   V V GE +  G+G KSKK+AE +A
Sbjct: 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKG-KSKKEAEQNA 212

Query: 181 AKVAYMRL 188
           AK A  +L
Sbjct: 213 AKAALEKL 220

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 76.7 bits (190), Expect = 2e-16
 Identities = 31/70 (44%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 123 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEV-FSGQGAKSKKQAEMSA 180
           YK  LQEL Q     LP Y   K+ G +H   F   V V G+    G G  SKK+AE +A
Sbjct: 160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTG-SSKKEAEQAA 218

Query: 181 AKVAYMRLKE 190
           AK A  +LKE
Sbjct: 219 AKQALKKLKE 228

Length = 229

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 123 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSA 180
            K++LQELAQK     P Y   K+ G  HAP F  TV+VGG+    G+G  SKK+A+  A
Sbjct: 1   PKSLLQELAQKR-KLPPEYELVKEEGPDHAPRFTVTVKVGGKRTGEGEG-SSKKEAKQRA 58

Query: 181 AKVAYMRLK 189
           A+ A   LK
Sbjct: 59  AEAALRSLK 67

Length = 67

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
            K+ LQ   QKK    P    E EGPPH+  F   VT++G+ Y       + KEA+  AA
Sbjct: 1   PKSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKY-GTGTGSSKKEAKQLAA 59

Query: 104 KVAL 107
           + AL
Sbjct: 60  EKAL 63

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 69.3 bits (170), Expect = 3e-15
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
            K++LQEL QK+    P    ++ G  H+PTF  TV V G+ +      SKK+A+  AA+
Sbjct: 1   PKSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTGTGSSKKEAKQLAAE 60

Query: 183 VAY 185
            A 
Sbjct: 61  KAL 63

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 44  YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
            K+ LQ   QK+ LP P Y   + EGP HA RF   V + G+         + KEA+  A
Sbjct: 1   PKSLLQELAQKRKLP-PEYELVKEEGPDHAPRFTVTVKVGGK-RTGEGEGSSKKEAKQRA 58

Query: 103 AKVALMSL 110
           A+ AL SL
Sbjct: 59  AEAALRSL 66

Length = 67

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 123 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSA 180
            K  LQEL Q +   LP Y   K+ G +H   F   V VGG E+ +G+G +SKK+AE +A
Sbjct: 163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKG-RSKKEAEQAA 221

Query: 181 AKVAYMRLKEPNP 193
           A+ A  +L    P
Sbjct: 222 AEQALKKLGVKEP 234

Length = 235

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
           YK  LQ + Q +  PLP Y     EGP H   F  +V+++G+ Y   +   + KEAE  A
Sbjct: 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGK-SKKEAEQNA 212

Query: 103 AKVAL 107
           AK AL
Sbjct: 213 AKAAL 217

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 63.6 bits (156), Expect = 9e-12
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 28  ISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTY 86
           I  ++     +D    YK +LQ   Q + LPLP Y   +E GP H   F  +VT++G+  
Sbjct: 148 IEEIDLGDLVKD----YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKEL 203

Query: 87  ESHQFFPTLKEAEHEAAKVALMSL 110
                  + KEAE  AAK AL  L
Sbjct: 204 -GEGTGSSKKEAEQAAAKQALKKL 226

Length = 229

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 39  DMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKE 97
           D     K +LQ   Q + L LP Y   + EGP H   F  +V + G+   + +   + KE
Sbjct: 158 DQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGR-SKKE 216

Query: 98  AEHEAAKVALMSLSLDKFQ 116
           AE  AA+ AL  L + +  
Sbjct: 217 AEQAAAEQALKKLGVKEPA 235

Length = 235

>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 109 SLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGG-EVFS 166
           +L  D  ++D     K  LQE A  +    PVY    +SG  H P F   VEV G    +
Sbjct: 153 ALETDAARRDA----KTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPET 208

Query: 167 GQGAKSKKQAEMSAA 181
           G+G +SK+ AE  AA
Sbjct: 209 GEG-RSKRAAEQVAA 222

Length = 235

>gnl|CDD|222987 PHA03103, PHA03103, double-strand RNA-binding protein; Provisional

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 146 SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVA 184
           SG SH+PTF ++V + G  F      +KK+A+ +AAK+A
Sbjct: 133 SGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLA 171

Length = 183

>gnl|CDD|234517 TIGR04238, seadorna_dsRNA, seadornavirus double-stranded RNA-binding protein

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 29/69 (42%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 124 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAA 181
             +LQELA K    LPVY    + G  HAPTF  T+++         A  SKKQAE  AA
Sbjct: 3   VGMLQELAVKRGLELPVYEKVGKEGPDHAPTF--TIKLTANDIEVIEAASSKKQAEKLAA 60

Query: 182 KVAYMRLKE 190
              Y  +KE
Sbjct: 61  ATIYEDMKE 69

This protein family occurs in the seadornavirus virus group, with an N-terminal domain for binding double-stranded RNA, is designated VP12 in Banna virus, VP8 in Kadipiro virus, and VP11 in Liao ning virus. Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.94
PRK12371	235	ribonuclease III; Reviewed	99.72
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.71
PRK14718	467	ribonuclease III; Provisional	99.71
PRK12372	413	ribonuclease III; Reviewed	99.66
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.64
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.62
smart00358	67	DSRM Double-stranded RNA binding motif.	99.61
PHA03103	183	double-strand RNA-binding protein; Provisional	99.6
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.59
PRK00102	229	rnc ribonuclease III; Reviewed	99.56
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	99.53
PHA03103	183	double-strand RNA-binding protein; Provisional	99.5
PRK12371	235	ribonuclease III; Reviewed	99.49
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.48
PRK14718	467	ribonuclease III; Provisional	99.47
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.45
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	99.45
PRK12372	413	ribonuclease III; Reviewed	99.43
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.41
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	99.4
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.39
smart00358	67	DSRM Double-stranded RNA binding motif.	99.37
PRK00102	229	rnc ribonuclease III; Reviewed	99.37
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.36
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	99.31
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	99.19
KOG4334	650	consensus Uncharacterized conserved protein, conta	99.05
KOG1817	533	consensus Ribonuclease [RNA processing and modific	98.74
KOG1817	533	consensus Ribonuclease [RNA processing and modific	98.24
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	97.88
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	97.87
KOG4334	650	consensus Uncharacterized conserved protein, conta	97.87
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	97.81
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	97.74
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	97.22
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	96.37
PF14954	252	LIX1: Limb expression 1	95.46
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	94.54
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	93.25
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	91.69
PF14954	252	LIX1: Limb expression 1	87.79
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	86.71
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	81.47

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.94  E-value=1.6e-25  Score=216.08  Aligned_cols=148  Identities=30%  Similarity=0.350  Sum_probs=131.2

Q ss_pred             CCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC-----
Q 018603           42 HLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF-----  115 (353)
Q Consensus        42 ~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~-----  115 (353)
                      +.|++.|||||.++++. |.|++ .++||.|++.|+++|.++. ....|. |.+||.|++.||..+|..|.....     
T Consensus        38 KS~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~rvtvg~-~~a~Ge-G~sKK~AKh~AA~~~L~~lk~l~~l~~v~  114 (339)
T KOG3732|consen   38 KSPISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVFRVTVGE-ITATGE-GKSKKLAKHRAAEALLKELKKLPPLANVR  114 (339)
T ss_pred             CChHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEEEEEEee-eEEecC-CCchhHHHHHHHHHHHHHHhcCCCccccc
Confidence            99999999999999987 68988 5799999999999999995 445677 599999999999999999986531     


Q ss_pred             -------C---------------CCcchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCC
Q 018603          116 -------Q---------------QDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKS  172 (353)
Q Consensus       116 -------~---------------~d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~S  172 (353)
                             .               .+...||+++|+||||+++|..|.|++ .+.|++|.++|+++|.+.+.. ..|.|.|
T Consensus       115 k~~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~-~~GkG~s  193 (339)
T KOG3732|consen  115 KDSLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFT-EEGKGPS  193 (339)
T ss_pred             cCcccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEeccee-eecCCch
Confidence                   0               013789999999999999999999997 689999999999999998866 5799999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCC
Q 018603          173 KKQAEMSAAKVAYMRLKEPNP  193 (353)
Q Consensus       173 KK~AKq~AA~~AL~~L~~~~~  193 (353)
                      ||.||++||..||+.|....+
T Consensus       194 KKiAKRnAAeamLe~l~~~~~  214 (339)
T KOG3732|consen  194 KKIAKRNAAEAMLESLGFVKP  214 (339)
T ss_pred             HHHHHHHHHHHHHHHhccCCC
Confidence            999999999999999997654

>PRK12371 ribonuclease III; Reviewed

Probab=99.72  E-value=9.6e-18  Score=157.82  Aligned_cols=144  Identities=20%  Similarity=0.112  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccCC-CCcchhH
Q 018603           45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQ-QDDSVLY  123 (353)
Q Consensus        45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~~-~d~~~n~  123 (353)
                      ...|.++|.+.|+.  .|.....+..... -.....+-++.|++..||.+.+.+...|.+++...+.+.... .....||
T Consensus        87 n~~La~ia~~lgL~--~~i~~~~~~~~~~-~~~~~~ilad~~EAliGAiylD~G~~~a~~~i~~~~~~~~~~~~~~~~d~  163 (235)
T PRK12371         87 AETCAAIADEIGLH--DLIRTGSDVKKLT-GKRLLNVRADVVEALIAAIYLDGGLEAARPFIQRYWQKRALETDAARRDA  163 (235)
T ss_pred             hHHHHHHHHHCCcH--HHhccCcchhhcC-CcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccCCH
Confidence            46788999998865  5554222211100 001124568899999999999999887777777766654321 2346799


Q ss_pred             HHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          124 KNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       124 ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      |+.||||||++++..|.|++ .+.||+|.+.|+|+|.|+|..++.|.|+|||+|+|.||+.||+.|...
T Consensus       164 Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~~  232 (235)
T PRK12371        164 KTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGVW  232 (235)
T ss_pred             HHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhhh
Confidence            99999999999888899997 578999999999999999999999999999999999999999998653

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.71  E-value=1.2e-17  Score=156.95  Aligned_cols=148  Identities=25%  Similarity=0.246  Sum_probs=122.0

Q ss_pred             CCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---CCC
Q 018603           42 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQD  118 (353)
Q Consensus        42 ~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~---~~d  118 (353)
                      .--...|.++++..++.  .|.....|+.+...|. +..|-++.|++..||.+.+.+...|-+++...+.....   ...
T Consensus        82 lV~~~~La~ia~~l~l~--~~l~lg~ge~~~gg~~-~~silaD~~EAligAiylD~g~~~~~~~i~~l~~~~~~~~~~~~  158 (235)
T COG0571          82 LVSEESLAEIARELGLG--DYLRLGKGEEKSGGRR-RESILADAFEALIGAIYLDSGLEAARKFILKLFLPRLEEIDAGD  158 (235)
T ss_pred             HHHHHHHHHHHHHhCcc--chhhccCChhhcCCCC-chhHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhccccc
Confidence            33456789999999855  6777777777666555 46778889999999999999966555556555555432   233


Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      ...|||++||||||+++...|.|.+ ...||+|++.|++.|.++|..++.|.|+|||+|+|.||+.||+.|....
T Consensus       159 ~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~~  233 (235)
T COG0571         159 QFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVKE  233 (235)
T ss_pred             cccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhcccc
Confidence            4599999999999999999999997 5669999999999999999999999999999999999999999998754

>PRK14718 ribonuclease III; Provisional

Probab=99.71  E-value=1.6e-17  Score=166.63  Aligned_cols=147  Identities=21%  Similarity=0.131  Sum_probs=114.1

Q ss_pred             CCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---CCC
Q 018603           42 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQD  118 (353)
Q Consensus        42 ~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~---~~d  118 (353)
                      ..-...|.++++++++.  .|.+...|......+. +-.|.++.|++.+|+.+++.+.+.+.+++...|.....   ...
T Consensus        72 LVSnetLA~IAr~LGL~--d~Lrlg~gE~~sgG~~-~~sILADvFEALIGAIYLDsG~e~a~~fI~~ll~p~i~~~d~~~  148 (467)
T PRK14718         72 LVKQQSLYEIAQALNIS--DGLRLGEGELRSGGFR-RPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILDHIDPRT  148 (467)
T ss_pred             HhhhHHHHHHHHHcCch--HHHhhCCcccccCCCC-ChhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhhhcccc
Confidence            34456789999999876  4554433433222222 34677889999999999999988666665555543321   123


Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~-~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      ...|||+.||||||++++..|+|.+ .+.||.|.+.|++.|.|+|. .++.|.|.|||+|+|.||+.||+.|...
T Consensus       149 ~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~~  223 (467)
T PRK14718        149 LGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTAV  223 (467)
T ss_pred             cccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence            4679999999999999999999997 57899999999999999996 4578999999999999999999999843

>PRK12372 ribonuclease III; Reviewed

Probab=99.66  E-value=1.4e-16  Score=158.94  Aligned_cols=146  Identities=22%  Similarity=0.135  Sum_probs=112.7

Q ss_pred             CCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---CCC
Q 018603           42 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQD  118 (353)
Q Consensus        42 ~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~---~~d  118 (353)
                      ..-...|.++|.++++.  .|.+...|......|. +-.|.++.|++.+|+.+++.+.+.+..++...|.....   ...
T Consensus        72 LVsn~tLA~IA~~LgL~--~~Lrlg~ge~~sgg~~-~~kILADvfEALIGAIYLDsG~e~a~~fV~~ll~p~l~~~~~~~  148 (413)
T PRK12372         72 LVKQQSLYEIAQALNIS--EGLRLGEGELRSGGFR-RPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILDHIDPRT  148 (413)
T ss_pred             HhhhHHHHHHHHHcCch--HhhhcCcchhhcCCCC-CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccccc
Confidence            44467889999999876  4544333332222232 34677889999999999999988655555555443221   122


Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~-~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      ...|||+.||||||++++..|+|.+ .+.||.|.+.|++.|.|+|. .++.|.|.|||+|+|.||+.||+.|..
T Consensus       149 ~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~  222 (413)
T PRK12372        149 LGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMA  222 (413)
T ss_pred             ccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence            3679999999999999999999997 67899999999999999985 457899999999999999999999985

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.64  E-value=1.3e-15  Score=113.75  Aligned_cols=67  Identities=42%  Similarity=0.586  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHh
Q 018603          122 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL  188 (353)
Q Consensus       122 n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L  188 (353)
                      |||+.|+||||++++..|.|++ ...|+.|.+.|+|.|.|+|..++.|.|.|||+||+.||+.||+.|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            7999999999999998999998 678999999999999999988889999999999999999999876

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.62  E-value=1e-15  Score=137.75  Aligned_cols=72  Identities=24%  Similarity=0.317  Sum_probs=66.8

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      ...|||+.||||||+++... .|.+ .+.||+|.+.|++.|.|+|..++.|.|+|||+|||+||+.||..|...
T Consensus       106 k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~  178 (183)
T PHA02701        106 KTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN  178 (183)
T ss_pred             CCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999887 8986 678999999999999999999999999999999999999999999654

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.61  E-value=3.4e-15  Score=111.79  Aligned_cols=66  Identities=45%  Similarity=0.579  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHhcCCCCceEEe-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhh
Q 018603          123 YKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK  189 (353)
Q Consensus       123 ~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~  189 (353)
                      ||+.|+||||++++ .|.|++. ..|+.|.+.|+|.|.|+|+.++.|.|.|||+||+.||+.||+.|.
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L~   67 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSLK   67 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhcC
Confidence            68999999999999 7899984 589999999999999999988899999999999999999999873

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.60  E-value=2.8e-15  Score=135.49  Aligned_cols=72  Identities=29%  Similarity=0.324  Sum_probs=65.2

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      ...|||++||||||+++... .|.+...||+|.++|++.|.|+|+.++.|.|+|||+|||+||+.||..|...
T Consensus       107 K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~  178 (183)
T PHA03103        107 KDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNY  178 (183)
T ss_pred             ccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhc
Confidence            35799999999999999875 5556789999999999999999999999999999999999999999998653

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.59  E-value=4.3e-15  Score=111.69  Aligned_cols=66  Identities=36%  Similarity=0.542  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHhcCCCCceEEeccCCCCC-CeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHh
Q 018603          123 YKNVLQELAQKEAYALPVYNTKQSGESHA-PTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL  188 (353)
Q Consensus       123 ~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~-~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L  188 (353)
                      ||+.|+|||+++++.+|.|.+...+++|. ++|.|+|.|+|..++.|.|+|||+||+.||+.||+.|
T Consensus         1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence            79999999999999876666666666655 8999999999999999999999999999999999987

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>PRK00102 rnc ribonuclease III; Reviewed

Probab=99.56  E-value=5.2e-15  Score=137.44  Aligned_cols=143  Identities=28%  Similarity=0.283  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---CCCcch
Q 018603           45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSV  121 (353)
Q Consensus        45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~---~~d~~~  121 (353)
                      ...|..++.+.++.  .|.....+..... ......+-++.|++..||.+.+.+...|.+++...+.+...   ......
T Consensus        82 n~~la~~a~~lgl~--~~i~~~~~~~~~~-~~~~~k~~ad~~EA~iGAiyld~g~~~~~~~i~~~~~~~l~~~~~~~~~~  158 (229)
T PRK00102         82 EESLAEIARELGLG--EYLLLGKGEEKSG-GRRRPSILADAFEALIGAIYLDQGLEAARKFILRLFEPRIEEIDLGDLVK  158 (229)
T ss_pred             HHHHHHHHHHCCcH--HHHccCcHHHHcC-CCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccccccC
Confidence            46788999998865  4443222111000 01123456778999999999998877555555444443321   124578


Q ss_pred             hHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          122 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       122 n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      |||+.|+||||++++..|.|.+ ...|+.|.+.|+|+|.++|..++.|.|.|||+||+.||+.||+.|+.
T Consensus       159 ~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~  228 (229)
T PRK00102        159 DYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE  228 (229)
T ss_pred             CHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999997 67899999999999999999999999999999999999999999864

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=99.53  E-value=1.4e-14  Score=133.52  Aligned_cols=141  Identities=28%  Similarity=0.295  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---CCCcch
Q 018603           45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSV  121 (353)
Q Consensus        45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~---~~d~~~  121 (353)
                      ...|..++.+.++.  .|.....+..... ....-.+-++.|++..||.+.+.+.+.|.+++...+.+...   ......
T Consensus        76 n~~la~~a~~~gl~--~~i~~~~~~~~~~-~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~~~~~~  152 (220)
T TIGR02191        76 EESLAEVARELGLG--KFLLLGKGEEKSG-GRRRESILADAFEALIGAIYLDSGLEAARKFILKLLIPRIDAIEKEETLK  152 (220)
T ss_pred             HHHHHHHHHHCCcH--HHhccCchHhhcC-CcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhcccccC
Confidence            56788999998864  4443221111110 01113456778999999999999977665555555444321   233678


Q ss_pred             hHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHh
Q 018603          122 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL  188 (353)
Q Consensus       122 n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L  188 (353)
                      |||+.|+||||++++..|.|++ ...|++|.+.|.|.|.++|..++.|.|.|||+||+.||+.||+.|
T Consensus       153 ~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l  220 (220)
T TIGR02191       153 DYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL  220 (220)
T ss_pred             ChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence            9999999999999998899997 467999999999999999999999999999999999999999875

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.50  E-value=6.4e-14  Score=126.72  Aligned_cols=92  Identities=22%  Similarity=0.203  Sum_probs=78.2

Q ss_pred             HHHHHHHhhhcccccccc-cccCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchh
Q 018603           20 RTTQVNATISTVNDVHKS-RDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEA   98 (353)
Q Consensus        20 ~~~~v~~li~~~~~~~~l-~~~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~A   98 (353)
                      ..-+++++|.+.+....+ +-..+|||+.||||||+.+... .|.+...||.|.+.|++.|.|+|..++.|. |.|||+|
T Consensus        86 ~~~~~~~l~~~~i~~~k~~d~K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~-G~SKKeA  163 (183)
T PHA03103         86 SMREDNKSFSDTIPYKKIISWKDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAI-GSTKKEA  163 (183)
T ss_pred             hHHHHHHHhhhhcchhhhhccccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEee-eCCHHHH
Confidence            455678888887765443 4567899999999999999874 555567899999999999999999999998 5999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 018603           99 EHEAAKVALMSLSLD  113 (353)
Q Consensus        99 kq~AAk~AL~~L~~~  113 (353)
                      ||.||+.||..|...
T Consensus       164 EQ~AAk~AL~~L~~~  178 (183)
T PHA03103        164 KNNAAKLAMDKILNY  178 (183)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999999764

>PRK12371 ribonuclease III; Reviewed

Probab=99.49  E-value=1.1e-13  Score=130.35  Aligned_cols=99  Identities=22%  Similarity=0.262  Sum_probs=80.7

Q ss_pred             hhhhcc-hhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeee
Q 018603           10 AVQVNA-RETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYE   87 (353)
Q Consensus        10 ~~~~~~-~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~   87 (353)
                      |+|+++ .+.+..|+ .+++.++++...  ....|||+.||||||+.+...|.|.+ .+.||.|.+.|++.|+++|..++
T Consensus       131 AiylD~G~~~a~~~i-~~~~~~~~~~~~--~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~  207 (235)
T PRK12371        131 AIYLDGGLEAARPFI-QRYWQKRALETD--AARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPE  207 (235)
T ss_pred             HHHHcCCHHHHHHHH-HHHHHHHHhccc--cccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEE
Confidence            677765 56666655 455555554322  24579999999999999888899998 47899999999999999999999


Q ss_pred             cccccCCcchhHHHHHHHHHHHhhc
Q 018603           88 SHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        88 ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      .|. |.|||+|++.||+.||+.|..
T Consensus       208 ~g~-G~sKK~Ae~~AA~~al~~~~~  231 (235)
T PRK12371        208 TGE-GRSKRAAEQVAAEKMLEREGV  231 (235)
T ss_pred             Eee-eCCHHHHHHHHHHHHHHHhhh
Confidence            898 599999999999999998754

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.48  E-value=1.6e-13  Score=129.17  Aligned_cols=103  Identities=25%  Similarity=0.297  Sum_probs=90.3

Q ss_pred             hhhhcchhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeeee-ecCCCCCccEEEEEEEccEeeec
Q 018603           10 AVQVNARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYES   88 (353)
Q Consensus        10 ~~~~~~~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l~-~~Gp~h~~~F~~~V~I~g~~~~a   88 (353)
                      |+|++.-..+...++.+++.+.++........+|||+.||||||..++.+|.|.+. ..||+|++.|++.|.++|..++.
T Consensus       129 AiylD~g~~~~~~~i~~l~~~~~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~  208 (235)
T COG0571         129 AIYLDSGLEAARKFILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGT  208 (235)
T ss_pred             HHHHhCChHHHHHHHHHHHHHHHhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEE
Confidence            78888886777777888888888755554556999999999999999999999984 66999999999999999999999


Q ss_pred             ccccCCcchhHHHHHHHHHHHhhcc
Q 018603           89 HQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        89 g~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      |. |.|||+|+|.||+.||..|...
T Consensus       209 G~-G~skk~AEq~AA~~al~~l~~~  232 (235)
T COG0571         209 GK-GRSKKEAEQAAAEQALKKLGVK  232 (235)
T ss_pred             ec-ccCHHHHHHHHHHHHHHHhccc
Confidence            98 5999999999999999988753

>PRK14718 ribonuclease III; Provisional

Probab=99.47  E-value=1.6e-13  Score=138.05  Aligned_cols=102  Identities=25%  Similarity=0.292  Sum_probs=83.7

Q ss_pred             hhhhcc-hhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEe-e
Q 018603           10 AVQVNA-RETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQT-Y   86 (353)
Q Consensus        10 ~~~~~~-~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~-~   86 (353)
                      |+|+++ ++.+.. ++.++|.++++........+|||+.||||||++++.+|.|.+ .+.||.|.+.|++.|+|+|.. +
T Consensus       119 AIYLDsG~e~a~~-fI~~ll~p~i~~~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~  197 (467)
T PRK14718        119 AVFLDGGFEAAQG-VIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIK  197 (467)
T ss_pred             HHHHccCHHHHHH-HHHHHHHHHHhhhcccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeE
Confidence            778775 555555 556777777765444345789999999999999999999998 478999999999999999854 4


Q ss_pred             ecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           87 ESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        87 ~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      +.|. |.|||+|+|.||+.||+.|...
T Consensus       198 G~G~-G~SKKeAEQ~AAk~AL~kL~~~  223 (467)
T PRK14718        198 VSGS-GASRRAAEQAAAKKALDEVTAV  223 (467)
T ss_pred             EEEE-cCCHHHHHHHHHHHHHHHhccc
Confidence            6787 5999999999999999999743

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.45  E-value=1.4e-13  Score=123.98  Aligned_cols=73  Identities=19%  Similarity=0.244  Sum_probs=66.4

Q ss_pred             ccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           39 DMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        39 ~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      ....|||+.||||||+.+..+ .|.+ ...||.|.+.|++.|.|+|..++.|. |.|||+|||+||+.||..|...
T Consensus       105 ~k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~-G~SKKeAEQ~AAk~AL~~L~~~  178 (183)
T PHA02701        105 LKTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATAS-GCSKKLARHAACADALTILINN  178 (183)
T ss_pred             CCCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEE-eCCHHHHHHHHHHHHHHHHHhh
Confidence            456899999999999999887 7977 56799999999999999999999998 5999999999999999998764

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=99.45  E-value=1.5e-13  Score=141.22  Aligned_cols=189  Identities=25%  Similarity=0.272  Sum_probs=139.3

Q ss_pred             Ceeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---------------C-------
Q 018603           60 PMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---------------Q-------  116 (353)
Q Consensus        60 P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~---------------~-------  116 (353)
                      +.|.. .+.||.|.+.|...|.|+|..+.       ||.|+..||+.+++.+.....               .       
T Consensus        10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (542)
T KOG2777|consen   10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF   82 (542)
T ss_pred             cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence            45665 58899999999999999997765       899999999999998875421               0       


Q ss_pred             ---CCcchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          117 ---QDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       117 ---~d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                         .....||++.|+|+++     -+.|.. .+.||.|.+.|.|.|.|||++|..| |.|||+||++||+.||+.|....
T Consensus        83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~  156 (542)
T KOG2777|consen   83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID  156 (542)
T ss_pred             HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence               1137899999999998     468886 7899999999999999999999878 99999999999999999998765


Q ss_pred             CCCC----CCccCCCccccccccccc--cccccccccccccCCCceeeeCCCCCchh-hHHHhh--hccccccccccccC
Q 018603          193 PSQG----PALVSPDIQAQADYSSSS--LQSNVTADLHHNIQTAGRLVFNPNSMPKV-QAEEIR--ELTTVNTEVAGYDL  263 (353)
Q Consensus       193 ~~~~----~~~~~~~~~~~~~~~~~~--~~~~l~~~~q~~~~~~~~~~~~~~~~~~~-~~e~~~--~~~~~~~~v~~~~~  263 (353)
                      ....    .........+.+.|+..-  .|..|+.+.+--.....+|   .-++... +.|+.+  .++|++-||.|+-+
T Consensus       157 ~~~~~~~~~~~~e~~~~~~~~Ia~lv~~kF~~L~k~~kp~~~~~tvL---Agvv~~~~~~~~~~VVslgTGtKcv~g~~l  233 (542)
T KOG2777|consen  157 ENPERPSEALTLENPSTLGDEIAELVLEKFDELTKNGKPIPREWTVL---AGVVMTKRDGEDKKVVSLGTGTKCVSGDKL  233 (542)
T ss_pred             CCcccccccccccCCChHHHHHHHHHHHHHHHHHhcCCCccchhhhh---hhhhhcccccccceEEEeeccCcccCccee
Confidence            4322    233444455556665433  4566666555444333333   2223333 445555  78888888886655


Q ss_pred             c
Q 018603          264 S  264 (353)
Q Consensus       264 ~  264 (353)
                      +
T Consensus       234 s  234 (542)
T KOG2777|consen  234 S  234 (542)
T ss_pred             C
Confidence            3

>PRK12372 ribonuclease III; Reviewed

Probab=99.43  E-value=4.6e-13  Score=133.92  Aligned_cols=101  Identities=25%  Similarity=0.295  Sum_probs=83.1

Q ss_pred             hhhhcc-hhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccE-ee
Q 018603           10 AVQVNA-RETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQ-TY   86 (353)
Q Consensus        10 ~~~~~~-~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~-~~   86 (353)
                      |+|+++ .+.+. .++.++|.++++........+|||+.||||||++++..|.|.+ ...|+.|.+.|++.|+|+|. .+
T Consensus       119 AIYLDsG~e~a~-~fV~~ll~p~l~~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~  197 (413)
T PRK12372        119 AVFLDGGFEAAQ-GVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVK  197 (413)
T ss_pred             HHHHhCCHHHHH-HHHHHHHHHHHhhcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEE
Confidence            677775 45555 4566777777765443345789999999999999999999998 57899999999999999985 44


Q ss_pred             ecccccCCcchhHHHHHHHHHHHhhc
Q 018603           87 ESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        87 ~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      +.|. |.|||+|+|.||+.||+.|..
T Consensus       198 g~G~-G~SKKeAEQ~AAr~AL~kL~~  222 (413)
T PRK12372        198 VSGS-GASRRAAEQAAAKKALDEVMA  222 (413)
T ss_pred             EEEE-eCCHHHHHHHHHHHHHHHHhc
Confidence            6777 599999999999999999984

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.41  E-value=1e-12  Score=98.03  Aligned_cols=67  Identities=42%  Similarity=0.567  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHh
Q 018603           43 LYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL  110 (353)
Q Consensus        43 npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L  110 (353)
                      |||+.|+||||++++..|.|.+ ...|+.|.+.|.+.|.|+|..+..|. |.+||+|++.||+.||..|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~-g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGE-GSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEee-cCCHHHHHHHHHHHHHHhC
Confidence            7999999999999888899998 67889999999999999998888888 4899999999999999865

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=99.40  E-value=8.5e-13  Score=104.80  Aligned_cols=69  Identities=32%  Similarity=0.428  Sum_probs=61.2

Q ss_pred             hhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEee----------ecccCCHHHHHHHHHHHHHHHhh
Q 018603          121 VLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFS----------GQGAKSKKQAEMSAAKVAYMRLK  189 (353)
Q Consensus       121 ~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~----------~G~G~SKK~AKq~AA~~AL~~L~  189 (353)
                      +++++.|+|+|++++|..|.|++ .+.||+|.+.|++.|.|.+..+.          .-...+||+||..||+.||+.|+
T Consensus         1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg   80 (80)
T PF14709_consen    1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG   80 (80)
T ss_pred             CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence            47899999999999999999998 68899999999999999887662          12348999999999999999884

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.39  E-value=1e-12  Score=127.70  Aligned_cols=148  Identities=24%  Similarity=0.214  Sum_probs=110.2

Q ss_pred             cCCcchhHHHHHHHHHHHhhcccC------CCCcc-hhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCE
Q 018603           92 FPTLKEAEHEAAKVALMSLSLDKF------QQDDS-VLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGE  163 (353)
Q Consensus        92 g~SKK~Akq~AAk~AL~~L~~~~~------~~d~~-~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~  163 (353)
                      |.....|+|.||..+|+.|.....      ..+.. +.+++.|||||.+++.. |.|++ .+.||+|.+.|+++|.|+. 
T Consensus         2 g~t~~~a~~daaa~al~~l~~~~~~~~~~~~~~~g~KS~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~rvtvg~-   79 (339)
T KOG3732|consen    2 GKTMQQAKHDAAAKALQVLQNGLISEGVMLNADPGAKSPISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVFRVTVGE-   79 (339)
T ss_pred             ccchhhhhccccccchhhccCCCcchhcccccCcccCChHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEEEEEEee-
Confidence            367789999999999999987543      12343 89999999999999997 59998 6799999999999999974 


Q ss_pred             EeeecccCCHHHHHHHHHHHHHHHhhCCCCCCC---------CCccCCCccccc----cccccccccccccccccccCCC
Q 018603          164 VFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQG---------PALVSPDIQAQA----DYSSSSLQSNVTADLHHNIQTA  230 (353)
Q Consensus       164 ~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~~~~---------~~~~~~~~~~~~----~~~~~~~~~~l~~~~q~~~~~~  230 (353)
                      ..+.|.|+|||.||++||..+|..|+...+...         ++..+.....++    +-..+|.+..|++|.|+.--.-
T Consensus        80 ~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~  159 (339)
T KOG3732|consen   80 ITATGEGKSKKLAKHRAAEALLKELKKLPPLANVRKDSLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKL  159 (339)
T ss_pred             eEEecCCCchhHHHHHHHHHHHHHHhcCCCccccccCcccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCC
Confidence            446799999999999999999999998764221         111011110011    0123467889999998877777


Q ss_pred             ceeeeCCCCCc
Q 018603          231 GRLVFNPNSMP  241 (353)
Q Consensus       231 ~~~~~~~~~~~  241 (353)
                      ..+.+.-+.+.
T Consensus       160 P~yelv~E~G~  170 (339)
T KOG3732|consen  160 PEYELVQESGV  170 (339)
T ss_pred             CceEEEeccCC
Confidence            77777655543

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.37  E-value=1.9e-12  Score=96.81  Aligned_cols=66  Identities=39%  Similarity=0.509  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHcCCCCCeeeee-ecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhh
Q 018603           44 YKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLS  111 (353)
Q Consensus        44 pKS~LqE~~QK~gl~~P~Y~l~-~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~  111 (353)
                      ||+.|+||||++++ .|.|.+. ..|+.|.+.|++.|.|+|..+..|. |.+||+|++.||+.||..|.
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~-g~sKk~Ak~~AA~~al~~L~   67 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGE-GSSKKEAKQRAAEAALRSLK   67 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEec-cCCHHHHHHHHHHHHHHhcC
Confidence            68999999999999 6899985 4799999999999999998888887 59999999999999998773

>PRK00102 rnc ribonuclease III; Reviewed

Probab=99.37  E-value=2.6e-12  Score=119.32  Aligned_cols=102  Identities=29%  Similarity=0.385  Sum_probs=82.4

Q ss_pred             hhhhcchhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeec
Q 018603           10 AVQVNARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYES   88 (353)
Q Consensus        10 ~~~~~~~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~a   88 (353)
                      |++++.-...-.-++.+++.|+++.........|||+.|+||||+.++..|.|.+ ...|+.|.+.|++.|+++|..++.
T Consensus       126 Aiyld~g~~~~~~~i~~~~~~~l~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~  205 (229)
T PRK00102        126 AIYLDQGLEAARKFILRLFEPRIEEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGE  205 (229)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEE
Confidence            5666543333334455566677665444456789999999999999998899987 467999999999999999999999


Q ss_pred             ccccCCcchhHHHHHHHHHHHhhc
Q 018603           89 HQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        89 g~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      |. |.+||+|++.||+.||+.|..
T Consensus       206 g~-g~skk~Ae~~AA~~Al~~l~~  228 (229)
T PRK00102        206 GT-GSSKKEAEQAAAKQALKKLKE  228 (229)
T ss_pred             ee-eCCHHHHHHHHHHHHHHHHhh
Confidence            98 599999999999999999864

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.36  E-value=2.2e-12  Score=96.93  Aligned_cols=66  Identities=45%  Similarity=0.708  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHcCCCCCeeeeeecCCCCC-ccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHh
Q 018603           44 YKNQLQSYTQKKNLPLPMYSCEREGPPHA-SRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL  110 (353)
Q Consensus        44 pKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~-~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L  110 (353)
                      ||+.|+|||+++++.+++|.....++.|. +.|.+.|.|+|..++.|. |.+||+|++.||+.||+.|
T Consensus         1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~-g~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGE-GSSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEec-cCCHHHHHHHHHHHHHHhC
Confidence            79999999999998877776666666665 899999999999999888 5899999999999999886

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=99.31  E-value=8.3e-12  Score=115.07  Aligned_cols=100  Identities=29%  Similarity=0.425  Sum_probs=81.2

Q ss_pred             hhhhcchhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeeee-ecCCCCCccEEEEEEEccEeeec
Q 018603           10 AVQVNARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYES   88 (353)
Q Consensus        10 ~~~~~~~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l~-~~Gp~h~~~F~~~V~I~g~~~~a   88 (353)
                      |++++.....-.-++.+++.|.++.........|||+.|+||||+.++..|.|++. ..|+.|.+.|.+.|.++|+.++.
T Consensus       120 Aiyld~g~~~~~~~i~~~~~~~~~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~  199 (220)
T TIGR02191       120 AIYLDSGLEAARKFILKLLIPRIDAIEKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGE  199 (220)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEE
Confidence            66666554444555666677776543333467999999999999998888999984 66899999999999999999999


Q ss_pred             ccccCCcchhHHHHHHHHHHHh
Q 018603           89 HQFFPTLKEAEHEAAKVALMSL  110 (353)
Q Consensus        89 g~Gg~SKK~Akq~AAk~AL~~L  110 (353)
                      |. |.+||+|++.||+.||+.|
T Consensus       200 g~-g~skk~A~~~AA~~Al~~l  220 (220)
T TIGR02191       200 GK-GKSKKEAEQNAAKAALEKL  220 (220)
T ss_pred             ee-eCCHHHHHHHHHHHHHHhC
Confidence            98 5999999999999999865

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=99.19  E-value=5.4e-11  Score=94.51  Aligned_cols=70  Identities=33%  Similarity=0.399  Sum_probs=61.6

Q ss_pred             CCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeee---------cccccCCcchhHHHHHHHHHHHhh
Q 018603           42 HLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYE---------SHQFFPTLKEAEHEAAKVALMSLS  111 (353)
Q Consensus        42 ~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~---------ag~Gg~SKK~Akq~AAk~AL~~L~  111 (353)
                      +++++.|+|+|+|++|..|.|.+ .+.||+|.+.|.++|.|.+..+.         ......+||+|+..||+.+|..|.
T Consensus         1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg   80 (80)
T PF14709_consen    1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG   80 (80)
T ss_pred             CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999 57899999999999999987663         224468899999999999999873

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=99.05  E-value=1.1e-09  Score=110.58  Aligned_cols=169  Identities=17%  Similarity=0.111  Sum_probs=124.3

Q ss_pred             HHHHHHHHhhhccccccc------ccccCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeeccccc
Q 018603           19 DRTTQVNATISTVNDVHK------SRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFF   92 (353)
Q Consensus        19 ~~~~~v~~li~~~~~~~~------l~~~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg   92 (353)
                      .-++.|+++-..+-+...      +-...+..+..|+||+|+....+|.|++.+.. .....|...|.+++..|+.|. |
T Consensus       346 li~~~Vq~~a~e~~~~p~~~ke~~~npngks~vCiLhEy~q~~lk~~pvyef~e~~-n~stpysa~v~~d~~~yGsG~-g  423 (650)
T KOG4334|consen  346 LINEFVQRLAKEIEDTPNIHKEYKANPNGKSKVCILHEYAQQCLKSLPVYEFAEND-NNSTPYSAGVLPDLFPYGSGV-G  423 (650)
T ss_pred             HHHHHHHHhhcccccCCCccCceeeCCCCceeeehHHHHHHHHhhhcceeehhhcc-CCCCccccccccccccccccc-c
Confidence            356777777665433111      22467888999999999998889999874332 234569999999999999998 5


Q ss_pred             CCcchhHHHHHHHHHHHhhcccCC----------------------------CC----------cchhHHHHHHHHHHHh
Q 018603           93 PTLKEAEHEAAKVALMSLSLDKFQ----------------------------QD----------DSVLYKNVLQELAQKE  134 (353)
Q Consensus        93 ~SKK~Akq~AAk~AL~~L~~~~~~----------------------------~d----------~~~n~ks~LqE~~qk~  134 (353)
                      .|||.|+..||+.+|+.|++....                            .|          ..-.|-..|.++.+++
T Consensus       424 ~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn  503 (650)
T KOG4334|consen  424 ASKKTAKLVAARDTLEILIPDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRN  503 (650)
T ss_pred             cchHHHHHHHHHHHHHHhcchhhhcccccccccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhh
Confidence            999999999999999999875310                            00          1345667888888876


Q ss_pred             c-CCC--CceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCC
Q 018603          135 A-YAL--PVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP  193 (353)
Q Consensus       135 ~-~~~--P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~  193 (353)
                      . |.-  -.+++. .+.....+|++.|   |+....+++++|+++||.|.+..|+.|...-.
T Consensus       504 ~g~~d~~ik~E~i-~~~nqkse~im~~---Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~  561 (650)
T KOG4334|consen  504 LGWNDLVIKKEMI-GNGNQKSEVIMIL---GKHTEEAECKNKRQGKQLASQRILQKLHPHLL  561 (650)
T ss_pred             cCCcceeeeeecc-CCCCccceeEeee---ccceeeeeeechhHHHHHHHHHHHHHhCHHhh
Confidence            4 321  122232 2334556888887   88878899999999999999999999987643

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=98.74  E-value=1.5e-08  Score=101.38  Aligned_cols=141  Identities=16%  Similarity=0.084  Sum_probs=104.0

Q ss_pred             HHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---CCCcchhH
Q 018603           47 QLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSVLY  123 (353)
Q Consensus        47 ~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~---~~d~~~n~  123 (353)
                      .-..||.-+|+.  .|.+.......  .-.-+.....+.|++..||.+.+....-+-+++-..+.+...   ...++.+|
T Consensus       354 tqakva~~lgf~--e~li~n~~~k~--~~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~~Prl~~fi~nq~wndp  429 (533)
T KOG1817|consen  354 TQAKVADDLGFH--EYLITNFDLKD--FQNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLFFPRLKEFIRNQDWNDP  429 (533)
T ss_pred             HHHHHHHHhCCc--hhhhhCcchhh--hhhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHhhhccCc
Confidence            344677777643  55542211100  011123445678888888888888887766666555554421   35678999


Q ss_pred             HHHHHHHHHHhcC------CCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          124 KNVLQELAQKEAY------ALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       124 ks~LqE~~qk~~~------~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      ++.||+||.....      .+|.|.+ ...||.+.+.|++.|.++|+.+++|+|+|.|+|+..||+.||+.+...
T Consensus       430 kskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~d  504 (533)
T KOG1817|consen  430 KSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKMD  504 (533)
T ss_pred             HHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHhh
Confidence            9999999988654      3688887 678999999999999999999999999999999999999999999853

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=98.24  E-value=3.6e-06  Score=84.73  Aligned_cols=103  Identities=20%  Similarity=0.214  Sum_probs=83.4

Q ss_pred             hhhhcchhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCC------CCeeee-eecCCCCCccEEEEEEEc
Q 018603           10 AVQVNARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLP------LPMYSC-EREGPPHASRFKCKVTID   82 (353)
Q Consensus        10 ~~~~~~~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~------~P~Y~l-~~~Gp~h~~~F~~~V~I~   82 (353)
                      |-|++.....-..++++++.|.+...-.-..-.+|++.||.+|..+...      +|.|.+ ...||.+.+.|++.|+++
T Consensus       395 aLyvD~~le~~~qf~~~l~~Prl~~fi~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~  474 (533)
T KOG1817|consen  395 ALYVDKGLEYCRQFLRVLFFPRLKEFIRNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFK  474 (533)
T ss_pred             HHhhcCCcHHHHHHHHHHhhHHHHHHHHhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEEC
Confidence            4555555444455688999998875554455688999999999987543      567776 578999999999999999


Q ss_pred             cEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           83 GQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        83 g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      |+.++.|. |.+.|.|+-.||+.||+.+...
T Consensus       475 gkrlat~~-G~nik~Ae~rAA~~ALe~~~~d  504 (533)
T KOG1817|consen  475 GKRLATGV-GSNIKQAEMRAAMQALENLKMD  504 (533)
T ss_pred             CEEEeecc-CchHhHHHHHHHHHHHHHHHhh
Confidence            99999998 5999999999999999998863

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=2.9e-05  Score=75.17  Aligned_cols=94  Identities=18%  Similarity=0.091  Sum_probs=78.9

Q ss_pred             hHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeeee-ecC-CCCCccEEEEEEEccEeeecccccCCc
Q 018603           18 TDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCE-REG-PPHASRFKCKVTIDGQTYESHQFFPTL   95 (353)
Q Consensus        18 ~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l~-~~G-p~h~~~F~~~V~I~g~~~~ag~Gg~SK   95 (353)
                      ++.+|++..+.+.-++..++ -..-+|...|-++|+++++.-|.+++. +.| ....+.|.+.++-+.+.++.|. |.+.
T Consensus       209 ~v~dFI~~qi~~k~L~~~~m-~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~-Gesl  286 (333)
T KOG3769|consen  209 FVRDFINDQILSKDLDPREM-WQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQ-GESL  286 (333)
T ss_pred             HHHHHHHHHhhhhccchHhh-ccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCc-chHH
Confidence            36777777777766665565 567899999999999999999999983 444 3557899999999999999998 5999


Q ss_pred             chhHHHHHHHHHHHhhcc
Q 018603           96 KEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        96 K~Akq~AAk~AL~~L~~~  113 (353)
                      +.|++.||..||..|-..
T Consensus       287 ~~A~e~AA~dAL~k~y~~  304 (333)
T KOG3769|consen  287 KLAEEQAARDALIKLYDH  304 (333)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            999999999999988765

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=3.4e-05  Score=74.65  Aligned_cols=83  Identities=24%  Similarity=0.305  Sum_probs=70.5

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccC-CCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC-CCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSG-ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN-PSQ  195 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~G-p~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~-~~~  195 (353)
                      ...+|...|-++|++++...|++.+ .+.| ....|.|.+.+.-|.+.+|.|-|.|-|.|++.||++||..|.... ..+
T Consensus       230 ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~tp~~~  309 (333)
T KOG3769|consen  230 QLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHTPERQ  309 (333)
T ss_pred             cccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCChhhc
Confidence            3678999999999999999999997 4554 467889999999999889999999999999999999999998876 344


Q ss_pred             CCCccC
Q 018603          196 GPALVS  201 (353)
Q Consensus       196 ~~~~~~  201 (353)
                      .|..++
T Consensus       310 ~p~~~~  315 (333)
T KOG3769|consen  310 RPPDYS  315 (333)
T ss_pred             CCCccc
Confidence            444443

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=97.87  E-value=9.4e-06  Score=82.69  Aligned_cols=71  Identities=23%  Similarity=0.197  Sum_probs=61.5

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      .+..+..|+||+|+.....|.|++.+.. .....|...|.+++..||.|.|.|||.||..||+.+|+.|...
T Consensus       374 gks~vCiLhEy~q~~lk~~pvyef~e~~-n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd  444 (650)
T KOG4334|consen  374 GKSKVCILHEYAQQCLKSLPVYEFAEND-NNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPD  444 (650)
T ss_pred             CceeeehHHHHHHHHhhhcceeehhhcc-CCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcch
Confidence            4556789999999999999999984332 2356799999999999999999999999999999999999865

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=97.81  E-value=2.8e-05  Score=84.37  Aligned_cols=146  Identities=24%  Similarity=0.242  Sum_probs=119.7

Q ss_pred             CHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC-------
Q 018603           43 LYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF-------  115 (353)
Q Consensus        43 npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~-------  115 (353)
                      +-|+.|..||-|+... |.|.+...|+....+|.|.|.+.+..+.....+..||.|+.+||+...+.|...+.       
T Consensus         2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p   80 (1282)
T KOG0921|consen    2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIP   80 (1282)
T ss_pred             cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCc
Confidence            5688999999999988 89999888888888999999999988776555788999999999999998864320       


Q ss_pred             -------------------------------C------------------------------------------------
Q 018603          116 -------------------------------Q------------------------------------------------  116 (353)
Q Consensus       116 -------------------------------~------------------------------------------------  116 (353)
                                                     +                                                
T Consensus        81 ~~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~i  160 (1282)
T KOG0921|consen   81 TLTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEI  160 (1282)
T ss_pred             ccccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCccc
Confidence                                           0                                                


Q ss_pred             --CCcchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHHhh
Q 018603          117 --QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV-----GGEVFSGQGAKSKKQAEMSAAKVAYMRLK  189 (353)
Q Consensus       117 --~d~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I-----~G~~~~~G~G~SKK~AKq~AA~~AL~~L~  189 (353)
                        .....|.|..|+++-|++... -.|+....|+.|.+.|+.+..+     +-.....+.|++||.|....|...++.|.
T Consensus       161 hg~wt~eN~K~~ln~~~q~~~~~-~~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm~  239 (1282)
T KOG0921|consen  161 HGNWTMENAKKALNEYLQKMRIQ-DNYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQLF  239 (1282)
T ss_pred             cCCCCcchhHHHHhHHHhhhhhc-cccceeecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHHH
Confidence              002578899999999999985 4899888999999999988765     22234557789999999999999988775


Q ss_pred             C
Q 018603          190 E  190 (353)
Q Consensus       190 ~  190 (353)
                      +
T Consensus       240 h  240 (1282)
T KOG0921|consen  240 H  240 (1282)
T ss_pred             H
Confidence            4

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=97.74  E-value=6.1e-05  Score=78.39  Aligned_cols=68  Identities=28%  Similarity=0.332  Sum_probs=59.8

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK  114 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~  114 (353)
                      .++||++.|+|+++  +   +.|.. ...|+.|.+.|.+.|.|+|..|+.+  |.+||+|++.||..||+.|....
T Consensus        88 ~~~npv~ll~e~~~--~---~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~--~~sKk~ak~~aa~~al~~l~~~~  156 (542)
T KOG2777|consen   88 EGKNPVSLLHELAN--G---LFFDFVNESGPQHAPKFVMSVVVDGRWFEGG--GRSKKEAKQEAAMAALQVLFKID  156 (542)
T ss_pred             ccCCchHHHHHHhc--c---cceeeeccCCCCCCceEEEEEEECCEEccCC--CcchHHHHHHHHHHHHHHHHhcc
Confidence            37999999999999  3   45665 5789999999999999999999876  59999999999999999998653

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=97.22  E-value=0.00039  Score=73.82  Aligned_cols=140  Identities=20%  Similarity=0.122  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHcCCCCCeee------e-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc-
Q 018603           42 HLYKNQLQSYTQKKNLPLPMYS------C-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD-  113 (353)
Q Consensus        42 ~npKS~LqE~~QK~gl~~P~Y~------l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~-  113 (353)
                      .++...++.+-+.++  ...|+      + ...||.|.++|+.++.+++..+++-  +.++|.|+-.||+..|+..... 
T Consensus       370 ~d~nak~mhl~grRh--rLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~a~--gps~~~~~wh~~~k~lq~~~~p~  445 (816)
T KOG3792|consen  370 NDPNAKEMHLKGRRH--RLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAEAE--GPSKKTAKWHAARKRLQNEGRPT  445 (816)
T ss_pred             CCcchHHhhhhcccc--cceeccccCCCceeccCCcccchhhhhhhhcCCccccC--CcccccchHHHHHHHhhccCCCc
Confidence            455555655555543  23577      4 6889999999999999999998864  5999999999999999877311 


Q ss_pred             cC-----------------------CCC------------------------------cchhHHHHHHHHHHHhcCCCCc
Q 018603          114 KF-----------------------QQD------------------------------DSVLYKNVLQELAQKEAYALPV  140 (353)
Q Consensus       114 ~~-----------------------~~d------------------------------~~~n~ks~LqE~~qk~~~~~P~  140 (353)
                      +.                       ..|                              ..+++...|+|-   +..  -.
T Consensus       446 ga~~r~~~~ge~~a~~p~~~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek---~rg--~k  520 (816)
T KOG3792|consen  446 GAAQRFGRMGEDPASMPEPKGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEK---RRG--DK  520 (816)
T ss_pred             cccccccccCCCcccCCCCCCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh---ccc--cc
Confidence            00                       000                              124444444443   333  26


Q ss_pred             eEE-eccC-CCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          141 YNT-KQSG-ESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       141 Y~~-~~~G-p~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      |++ .+.| ..|.++|.+.|.+.|+.+ .|.+.+||-|+..|+.-|++.+...
T Consensus       521 ~El~set~~gs~~~R~v~gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt~~l  572 (816)
T KOG3792|consen  521 YELPSETGTGSHDKRFVKGVMRVGILA-KGLLLNGDRAVELALLCAEKPTSGL  572 (816)
T ss_pred             eecccccCCCCCCceeeeeeeeeehhh-ccccccchHHHHHHHHhccCccccc
Confidence            886 5555 789999999999999987 4779999999999999888766543

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=96.37  E-value=0.014  Score=47.19  Aligned_cols=65  Identities=26%  Similarity=0.290  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhcC-----CCCceEEeccCCCCCCeEEEEEEECCE----EeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          124 KNVLQELAQKEAY-----ALPVYNTKQSGESHAPTFVSTVEVGGE----VFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       124 ks~LqE~~qk~~~-----~~P~Y~~~~~Gp~H~~~F~~~V~I~G~----~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      ++.|+.||++.--     ..|.|.+...+.    .|.|+|.+-..    .+.+..-.|||.||+.||-.|.+.|....
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g   75 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAG   75 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcC
Confidence            6789999988532     358899865542    79999988421    13233468999999999999999998764

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>PF14954 LIX1: Limb expression 1

Probab=95.46  E-value=0.045  Score=51.19  Aligned_cols=77  Identities=32%  Similarity=0.382  Sum_probs=53.7

Q ss_pred             cchhHHHHHHHHHHHhc---CCCCce--EEeccCCCCCCeEEEEEEE-CCEEeee-cccCCHHHHHHHHHHHHHHH-hhC
Q 018603          119 DSVLYKNVLQELAQKEA---YALPVY--NTKQSGESHAPTFVSTVEV-GGEVFSG-QGAKSKKQAEMSAAKVAYMR-LKE  190 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~---~~~P~Y--~~~~~Gp~H~~~F~~~V~I-~G~~~~~-G~G~SKK~AKq~AA~~AL~~-L~~  190 (353)
                      ...|-+..|||+=|.+.   ...+.=  .+.+..|...|.|+|-|.+ +|-.||. ..+.+|-+|++.||+.||.. +.+
T Consensus        19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSvfN   98 (252)
T PF14954_consen   19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSVFN   98 (252)
T ss_pred             ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHHHh
Confidence            35788999999775532   222111  1234667778889999999 4556664 56799999999999999975 555


Q ss_pred             CCCCC
Q 018603          191 PNPSQ  195 (353)
Q Consensus       191 ~~~~~  195 (353)
                      +.+++
T Consensus        99 EhPsR  103 (252)
T PF14954_consen   99 EHPSR  103 (252)
T ss_pred             cCCcc
Confidence            55433

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=94.54  E-value=0.055  Score=59.70  Aligned_cols=69  Identities=25%  Similarity=0.314  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEee-ecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          122 LYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       122 n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~-~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      |-|..|..||-++... |.|.+...|+....+|.|.|.+.+..+. .|...+||.|+..||+.-.+.|...
T Consensus         2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~   71 (1282)
T KOG0921|consen    2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVRE   71 (1282)
T ss_pred             cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhh
Confidence            5688999999999997 8999998999999999999999887763 4777899999999999999998654

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=93.25  E-value=0.25  Score=39.94  Aligned_cols=67  Identities=22%  Similarity=0.184  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHcCCC-----CCeeeeeecCCCCCccEEEEEEEccE----eeecccccCCcchhHHHHHHHHHHHhhcccC
Q 018603           45 KNQLQSYTQKKNLP-----LPMYSCEREGPPHASRFKCKVTIDGQ----TYESHQFFPTLKEAEHEAAKVALMSLSLDKF  115 (353)
Q Consensus        45 KS~LqE~~QK~gl~-----~P~Y~l~~~Gp~h~~~F~~~V~I~g~----~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~  115 (353)
                      ++.|+.||+++.-.     .|.|.+...+.    .|.|+|.+-..    .+... ...+|+.||+.||-.|...|.+.+.
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~-~~~sk~~AK~sAAf~Ac~~L~~~g~   76 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGP-PMRSKKLAKRSAAFEACKKLHEAGE   76 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE---SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEcc-ccccHHHHHHHHHHHHHHHHHHcCC
Confidence            57899999997432     47788765443    59998887531    12222 2589999999999999999988764


Q ss_pred             C
Q 018603          116 Q  116 (353)
Q Consensus       116 ~  116 (353)
                      .
T Consensus        77 l   77 (90)
T PF03368_consen   77 L   77 (90)
T ss_dssp             -
T ss_pred             C
Confidence            3

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=91.69  E-value=0.072  Score=54.35  Aligned_cols=71  Identities=30%  Similarity=0.238  Sum_probs=61.3

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeecc-cCCHHHHHHHHHHHHHHHhhCCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~-G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      .+..++..|..||.+.+...|.|++.+.   -++.|...+.++|+.|..+. -++||.|+|.||..+|+......
T Consensus       373 ~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~e  444 (477)
T KOG2334|consen  373 KWDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLWE  444 (477)
T ss_pred             CCCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcch
Confidence            4678999999999999999999998654   36789999999999997654 49999999999999999887654

>PF14954 LIX1: Limb expression 1

Probab=87.79  E-value=1.9  Score=40.56  Aligned_cols=70  Identities=30%  Similarity=0.331  Sum_probs=48.4

Q ss_pred             ccCCCHHHHHHHHHHHc---CCCCCeee--eeecCCCCCccEEEEEEEcc-EeeecccccCCcchhHHHHHHHHHH
Q 018603           39 DMQHLYKNQLQSYTQKK---NLPLPMYS--CEREGPPHASRFKCKVTIDG-QTYESHQFFPTLKEAEHEAAKVALM  108 (353)
Q Consensus        39 ~~~~npKS~LqE~~QK~---gl~~P~Y~--l~~~Gp~h~~~F~~~V~I~g-~~~~ag~Gg~SKK~Akq~AAk~AL~  108 (353)
                      ....|-+..|||+=|..   +..++.-.  +.+..|...+.|.|-|++.| --|+....-.+|.+|++.||+.||-
T Consensus        18 ~~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALm   93 (252)
T PF14954_consen   18 YGDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALM   93 (252)
T ss_pred             cccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHH
Confidence            46788999999986543   33322211  12455666777999998854 4555555568999999999999974

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=86.71  E-value=0.28  Score=50.25  Aligned_cols=68  Identities=31%  Similarity=0.335  Sum_probs=59.7

Q ss_pred             CCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           42 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        42 ~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      ..|+..|..||-+.+..-|.|++...   .++.|...+.++|+.|.+..+-+++|.|+|.||..+|....-
T Consensus       375 ~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l  442 (477)
T KOG2334|consen  375 DTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNL  442 (477)
T ss_pred             CCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCc
Confidence            78999999999999988899998543   356799999999999999998899999999999999887654

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=81.47  E-value=0.63  Score=50.28  Aligned_cols=64  Identities=22%  Similarity=0.139  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHhcCCCCceE------E-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhh
Q 018603          123 YKNVLQELAQKEAYALPVYN------T-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK  189 (353)
Q Consensus       123 ~ks~LqE~~qk~~~~~P~Y~------~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~  189 (353)
                      +-..+.-+-++++.  ..|+      + .+.||.|.++|+++|.++|..+. ..|.+||.|+-.||+..|+...
T Consensus       372 ~nak~mhl~grRhr--LQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~-a~gps~~~~~wh~~~k~lq~~~  442 (816)
T KOG3792|consen  372 PNAKEMHLKGRRHR--LQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAE-AEGPSKKTAKWHAARKRLQNEG  442 (816)
T ss_pred             cchHHhhhhccccc--ceeccccCCCceeccCCcccchhhhhhhhcCCccc-cCCcccccchHHHHHHHhhccC
Confidence            33333334344333  3687      4 68999999999999999999985 5589999999999999988763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	353
3adg_A	73	Structure Of Arabidopsis Hyl1 And Its Molecular Imp		2e-10
2l2n_A	103	Backbone 1h, 13c, And 15n Chemical Shift Assignment		4e-10
2l2n_A	103	Backbone 1h, 13c, And 15n Chemical Shift Assignment		5e-04
2l2m_A	77	Solution Structure Of The Second Dsrbd Of Hyl1 Leng		2e-07
3adj_A	76	Structure Of Arabidopsis Hyl1 And Its Molecular Imp		3e-07
2l3j_A	236	The Solution Structure Of The Adar2 Dsrbm-Rna Compl		3e-05
2l3c_A	74	Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna		1e-04
2b7t_A	73	Structure Of Adar2 Dsrbm1 Length = 73		2e-04

>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications For Mirna Processing Length = 73

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 42  HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 101
           H++K++LQ Y QK  LP P+Y   +EGP H S F+  V +DG  Y S   F   K AE  
Sbjct: 3   HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 62
Query: 102 AAKVALMSLS 111
           AA+VAL  L+
Sbjct: 63  AAEVALRELA 72

>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For The First Dsrbd Of Protein Hyl1 Length = 103

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 45/82 (54%)
Query: 30  TVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESH 89
           T  DV       +++K++LQ Y QK  LP P+Y   +EGP H S F+  V +DG  Y S 
Sbjct: 5   TSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL 64
Query: 90  QFFPTLKEAEHEAAKVALMSLS 111
             F   K AE  AA+VAL  L+
Sbjct: 65  PGFFNRKAAEQSAAEVALRELA 86

>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For The First Dsrbd Of Protein Hyl1 Length = 103

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 119 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAE 177
           +  ++K+ LQE AQK     PVY   + G SH   F STV + G  + S  G  ++K AE
Sbjct: 15  NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAE 74
Query: 178 MSAAKVAYMRL 188
            SAA+VA   L
Sbjct: 75  QSAAEVALREL 85

>pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1 Length = 77

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 122 LYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 180
           L KN+LQE AQK  YA+P+Y  ++         F  TVE+GG  ++G   ++KK AE+SA
Sbjct: 8   LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 67
Query: 181 AKVAYMRLK 189
            + A + ++
Sbjct: 68  GRTALLAIQ 76

>pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications For Mirna Processing Length = 76

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 122 LYKNVLQELAQKEAYALPVYNTKQ-SGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 180
           L KN+LQE AQK  YA+P+Y  ++         F  TVE+GG  ++G   ++KK AE+SA
Sbjct: 5   LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 64
Query: 181 AKVAYMRLK 189
            + A + ++
Sbjct: 65  GRTALLAIQ 73

>pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex Reveals A Sequence-Specific Read Out Of The Minor Groove Length = 236

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 121 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 180
           VL KN L +L + +   L      Q+G  HAP FV +VEV G+VF G G  +KK+A++ A
Sbjct: 4   VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSG-PTKKKAKLHA 61
Query: 181 AKVAYMRLKE-PNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQT 229
           A+ A     + PN S+    +   +    D++S   Q++    L +  +T
Sbjct: 62  AEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSD--QADFPDTLFNGFET 109

>pdb|2L3C|A Chain A, Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna Length = 74

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 121 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 180
           VL KN L +L + +   L      Q+G  HAP FV +VEV G+VF G G  +KK+A++ A
Sbjct: 4   VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 61
Query: 181 AKVA 184
           A+ A
Sbjct: 62  AEKA 65

>pdb|2B7T|A Chain A, Structure Of Adar2 Dsrbm1 Length = 73

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 121 VLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSA 180
           VL KN L +L + +   L      Q+G  HAP FV +VEV G+VF G G  +KK+A++ A
Sbjct: 4   VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGP-TKKKAKLHA 61
Query: 181 AKVA 184
           A+ A
Sbjct: 62  AEKA 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	8e-44
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	1e-19
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	6e-13
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	3e-27
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	1e-18
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	5e-26
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	8e-23
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	1e-25
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	4e-23
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	6e-21
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	2e-18
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	5e-19
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	2e-11
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	7e-19
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	2e-12
1x49_A	97	Interferon-induced, double-stranded RNA- activated	4e-18
1x49_A	97	Interferon-induced, double-stranded RNA- activated	1e-12
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	1e-17
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	2e-11
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	3e-17
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	7e-11
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	4e-17
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	1e-12
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	4e-17
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	6e-12
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	1e-16
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	4e-12
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	1e-16
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	3e-11
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	3e-16
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	2e-11
2dix_A	84	Interferon-inducible double stranded RNA- dependen	8e-16
2dix_A	84	Interferon-inducible double stranded RNA- dependen	9e-12
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	9e-16
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	6e-11
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	2e-15
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	4e-09
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	2e-15
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	3e-15
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	4e-15
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	3e-10
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	1e-14
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	1e-08
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	2e-14
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	4e-09
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	1e-13
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	9e-11
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	1e-13
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	1e-09
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	2e-13
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	9e-11
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	2e-13
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	4e-06
2l33_A	91	Interleukin enhancer-binding factor 3; structural	3e-13
2l33_A	91	Interleukin enhancer-binding factor 3; structural	8e-10
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	3e-13
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	3e-10
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	5e-13
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	1e-07
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	5e-10
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	3e-09
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	4e-05
2qvw_A	756	GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral	8e-10
1x48_A	88	Interferon-induced, double-stranded RNA- activated	2e-07
1x48_A	88	Interferon-induced, double-stranded RNA- activated	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	1e-04
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	3e-04

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score =  148 bits (375), Expect = 8e-44
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 16/165 (9%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
           +  +L +Y QK+ + L        GPPH  RF  +V IDG+ +   +   + KEA++ AA
Sbjct: 15  FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGR-SKKEAKNAAA 73

Query: 104 KVALMSLS-------------LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESH 150
           K+A+  L+              +  +      Y  ++  +AQK+   +  Y    SG   
Sbjct: 74  KLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVN-YEQCASGVHG 132

Query: 151 APTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK-EPNPS 194
              F    ++G + +S     +K++A+  AAK+AY+++  E   S
Sbjct: 133 PEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETGS 177

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 84.2 bits (208), Expect = 1e-19
 Identities = 20/84 (23%), Positives = 33/84 (39%)

Query: 112 LDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAK 171
           ++      +  +   L    QK+   L       SG  H   F   V + G  F     +
Sbjct: 4   MEMAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGR 63

Query: 172 SKKQAEMSAAKVAYMRLKEPNPSQ 195
           SKK+A+ +AAK+A   L +   + 
Sbjct: 64  SKKEAKNAAAKLAVEILNKEKKAV 87

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 65.3 bits (159), Expect = 6e-13
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 4   GSSSESAVQVNARET----DRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPL 59
           G S + A    A+      ++  +  + +               Y   +    QKK L +
Sbjct: 62  GRSKKEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTV 121

Query: 60  PMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL 110
               C   G      F  K  +  + Y S     T +EA+  AAK+A + +
Sbjct: 122 NYEQCA-SGVHGPEGFHYKCKMGQKEY-SIGTGSTKQEAKQLAAKLAYLQI 170

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 177
              L KN+LQE AQK  YA+P+Y   K         F  TVE+GG  ++G   ++KK AE
Sbjct: 2   SHGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAE 61

Query: 178 MSAAKVAYMRLKEPN 192
           +SA + A + ++   
Sbjct: 62  ISAGRTALLAIQSDT 76

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 78.1 bits (193), Expect = 1e-18
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 43  LYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 101
           L KN LQ Y QK N  +P+Y C + E     ++F C V I G  Y       T K+AE  
Sbjct: 5   LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTG-AATRTKKDAEIS 63

Query: 102 AAKVALMSL 110
           A + AL+++
Sbjct: 64  AGRTALLAI 72

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score = 99.1 bits (247), Expect = 5e-26
 Identities = 34/84 (40%), Positives = 46/84 (54%)

Query: 28  ISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYE 87
           + T  DV       +++K++LQ Y QK  LP P+Y   +EGP H S F+  V +DG  Y 
Sbjct: 3   MMTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYN 62

Query: 88  SHQFFPTLKEAEHEAAKVALMSLS 111
           S   F   K AE  AA+VAL  L+
Sbjct: 63  SLPGFFNRKAAEQSAAEVALRELA 86

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score = 90.7 bits (225), Expect = 8e-23
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 108 MSLSLDKFQQDDSVL-YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF- 165
           M  S D      +   +K+ LQE AQK     PVY   + G SH   F STV + G  + 
Sbjct: 3   MMTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYN 62

Query: 166 SGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPALVSPD 203
           S  G  ++K AE SAA+VA   L + +           
Sbjct: 63  SLPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVH 100

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 97.3 bits (243), Expect = 1e-25
 Identities = 32/70 (45%), Positives = 42/70 (60%)

Query: 42  HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE 101
           H++K++LQ Y QK  LP P+Y   +EGP H S F+  V +DG  Y S   F   K AE  
Sbjct: 3   HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 62

Query: 102 AAKVALMSLS 111
           AA+VAL  L+
Sbjct: 63  AAEVALRELA 72

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 90.4 bits (225), Expect = 4e-23
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAA 181
           +K+ LQE AQK     PVY   + G SH   F STV + G  + S  G  ++K AE SAA
Sbjct: 5   FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 64

Query: 182 KVAYMRLKE 190
           +VA   L +
Sbjct: 65  EVALRELAK 73

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 86.5 bits (214), Expect = 6e-21
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 4/105 (3%)

Query: 31  VNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQ 90
           +    ++   Q   K  L  + +++ LP P+Y   +        F   VT+  Q Y+S  
Sbjct: 15  IRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQRTIDR--MFCSVVTVAEQKYQSTL 72

Query: 91  FFPTLKEAEHEAAKVALMSLSL--DKFQQDDSVLYKNVLQELAQK 133
           +  + K AE  AA V L S  L   +  ++   L K   +   Q 
Sbjct: 73  WDKSKKLAEQTAAIVCLRSQGLPEGRLGEESPSLNKRKREAPDQD 117

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 79.6 bits (196), Expect = 2e-18
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 97  EAEHEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVS 156
            +    + +  M++  D+      +  K  L E  ++E    PVY T Q   +    F S
Sbjct: 2   SSGSSGSGIIKMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQ--RTIDRMFCS 59

Query: 157 TVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLKEPNP 193
            V V  + + S    KSKK AE +AA V       P  
Sbjct: 60  VVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPEG 97

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 83.7 bits (208), Expect = 5e-19
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 103 AKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVG 161
            +  L ++   + ++D    YK +LQE+ QK     P Y      G  H   F+   ++ 
Sbjct: 136 KEDILSAIKEGRVKKD----YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIK 191

Query: 162 GEVFSGQGAKSKKQAEMSAAKVAYMRLKE 190
                G+G KSKK+AE  AA+     L+E
Sbjct: 192 EYRTLGEG-KSKKEAEQRAAEELIKLLEE 219

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 44  YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
           YK  LQ  TQK+    P Y     EGP H  +F  +  I            + KEAE  A
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEG--KSKKEAEQRA 209

Query: 103 AKVALMSL 110
           A+  +  L
Sbjct: 210 AEELIKLL 217

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 83.8 bits (208), Expect = 7e-19
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAA 181
           +K  LQEL        P Y    +G  H   F + V V    +  G G +SKK+AE  AA
Sbjct: 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVG-RSKKEAEQKAA 222

Query: 182 KVAYMRLKEPNPS 194
             A+  L+  + +
Sbjct: 223 AAAWKALEVLDNA 235

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 28  ISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYE 87
           +     +    D    +K  LQ  T  + L  P Y     GP H   F   V +    Y 
Sbjct: 152 LDAAPTLGAGLD----WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYG 207

Query: 88  SHQFFPTLKEAEHEAAKVALMSL 110
           S     + KEAE +AA  A  +L
Sbjct: 208 SGV-GRSKKEAEQKAAAAAWKAL 229

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 77.4 bits (191), Expect = 4e-18
 Identities = 19/76 (25%), Positives = 29/76 (38%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
           Y + L +  Q    A+       SG  H   F   V +  + F     +SK++A  +AAK
Sbjct: 16  YMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAK 75

Query: 183 VAYMRLKEPNPSQGPA 198
           +A   L   N      
Sbjct: 76  LAVDILDNENKVDCHT 91

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
           Y ++L  Y Q   + +        GPPH  RF  +V ID + +       + +EA + AA
Sbjct: 16  YMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEF-PEAKGRSKQEARNAAA 74

Query: 104 KVALMSL 110
           K+A+  L
Sbjct: 75  KLAVDIL 81

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 80.3 bits (199), Expect = 1e-17
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 101 EAAK---VALMSLSLDKFQQDDSVL-YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFV 155
           E  K          ++K  + + +  YK  LQE+ Q E    P Y   +         FV
Sbjct: 155 EKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFV 214

Query: 156 STVEVGGEVFS-GQGAKSKKQAEMSAAKVAYMRLKE 190
             V V G+  + G+G ++KK+AE  AA++AY +L +
Sbjct: 215 VEVRVNGKTIATGKG-RTKKEAEKEAARIAYEKLLK 249

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 28  ISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTY 86
           I  +       D    YK  LQ   Q ++   P Y     E       F  +V ++G+T 
Sbjct: 169 IEKIMKGEMLFD----YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTI 224

Query: 87  ESHQFFPTLKEAEHEAAKVALMSLSLDK 114
            +     T KEAE EAA++A   L  ++
Sbjct: 225 -ATGKGRTKKEAEKEAARIAYEKLLKER 251

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 79.2 bits (196), Expect = 3e-17
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 107 LMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVF 165
              +      +D    YK  LQE+ Q +    P Y   +  G  H   F   + + G+  
Sbjct: 167 FPQIDAKILIKD----YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL 222

Query: 166 S-GQGAKSKKQAEMSAAKVAYMRLKE 190
           +      SKK+A+  AAK+A  +L  
Sbjct: 223 ARAIA-GSKKEAQQMAAKIALEKLGA 247

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 60.7 bits (148), Expect = 7e-11
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 16/90 (17%)

Query: 28  ISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTY 86
              ++     +D    YK +LQ  TQ K    P Y      GP H  +F+  + +DG+  
Sbjct: 167 FPQIDAKILIKD----YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL 222

Query: 87  -----ESHQFFPTLKEAEHEAAKVALMSLS 111
                 S       KEA+  AAK+AL  L 
Sbjct: 223 ARAIAGSK------KEAQQMAAKIALEKLG 246

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 74.7 bits (184), Expect = 4e-17
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 123 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
             + L ++ Q      P Y    + G      FV  V+VG EV +G G  +KK A+ +AA
Sbjct: 8   PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTG-PNKKIAKKNAA 66

Query: 182 KVAYMRLKEPNPS 194
           +   ++L     +
Sbjct: 67  EAMLLQLGYKAST 79

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 44  YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
             ++L    Q +    P Y      G P    F  +V +  +        P  K A+  A
Sbjct: 8   PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTG--PNKKIAKKNA 65

Query: 103 AKVALMSL 110
           A+  L+ L
Sbjct: 66  AEAMLLQL 73

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 74.7 bits (184), Expect = 4e-17
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 123 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
               LQEL  ++ + LP Y  T++SG +H   F  T  V   +  G G  SKK A+ +AA
Sbjct: 17  EVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG-TSKKLAKRNAA 75

Query: 182 KVAYMRLKE 190
               +R+  
Sbjct: 76  AKMLLRVHT 84

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 60.0 bits (146), Expect = 6e-12
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 44  YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
               LQ    +K   LP Y+  +  GP H   F     ++           + K A+  A
Sbjct: 17  EVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNA 74

Query: 103 AKVALMSL 110
           A   L+ +
Sbjct: 75  AAKMLLRV 82

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 72.6 bits (179), Expect = 1e-16
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 124 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
              LQELA ++ + LP Y   ++SG  H   F  T  V   V +G G  SK+ A+  AA+
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSG-TSKQVAKRVAAE 61

Query: 183 VAYMRLK 189
               + K
Sbjct: 62  KLLTKFK 68

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 59.9 bits (146), Expect = 4e-12
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 45  KNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
              LQ    +K   LP Y+  +  GPPH   F     ++           + + A+  AA
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSG--TSKQVAKRVAA 60

Query: 104 KVALMSL 110
           +  L   
Sbjct: 61  EKLLTKF 67

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 73.1 bits (180), Expect = 1e-16
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 123 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
             ++LQE   +     PVY+  K  G++H P F   V VG    +GQG  SKK A+  AA
Sbjct: 16  PISLLQEYGTRI-GKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQG-PSKKAAKHKAA 73

Query: 182 KVAYMRLKEPNPSQGPAL 199
           +VA   LK       PAL
Sbjct: 74  EVALKHLKG-GSMLEPAL 90

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 44  YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
             + LQ Y  +     P+Y   + EG  H   F  +VT+   +       P+ K A+H+A
Sbjct: 16  PISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQG--PSKKAAKHKA 72

Query: 103 AKVALMSL 110
           A+VAL  L
Sbjct: 73  AEVALKHL 80

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 72.0 bits (177), Expect = 3e-16
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 123 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
               LQEL  ++ + LP Y  T++SG +H   F  T  V   +  G G  SKK A+ +AA
Sbjct: 18  PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG-TSKKLAKRNAA 76

Query: 182 KVAYMRLKEPN 192
               +R+  P+
Sbjct: 77  AKMLLRVSGPS 87

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 44  YKNQLQSYTQKKNLPLPMYS-CEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
               LQ    +K   LP Y+  +  GP H   F     ++           + K A+  A
Sbjct: 18  PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNA 75

Query: 103 AKVALMSLS 111
           A   L+ +S
Sbjct: 76  AAKMLLRVS 84

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 70.8 bits (174), Expect = 8e-16
 Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 124 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
             VL E   K    +PVY   +   + H PTF   V VG    +G+G  SKK A+  AA+
Sbjct: 11  IQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGDITCTGEG-TSKKLAKHRAAE 68

Query: 183 VAYMRLKE--PNPSQG 196
            A   LK     PS G
Sbjct: 69  AAINILKANASGPSSG 84

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 59.6 bits (145), Expect = 9e-12
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 45  KNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
              L  Y  K    +P+Y C   +   H   F  +VT+   T        + K A+H AA
Sbjct: 11  IQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTGE--GTSKKLAKHRAA 67

Query: 104 KVALMSL 110
           + A+  L
Sbjct: 68  EAAINIL 74

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 74.8 bits (183), Expect = 9e-16
 Identities = 34/187 (18%), Positives = 55/187 (29%), Gaps = 34/187 (18%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
               L  Y Q+     P+Y+      P    F   VTIDG TY S     + K A+++AA
Sbjct: 24  EVCILHEYMQRVLKVRPVYNFFECENPSEP-FGASVTIDGVTYGSGTA-SSKKLAKNKAA 81

Query: 104 KVALMSLSLDKFQQDDSVLYKN-------------------------------VLQELAQ 132
           +  L  L  D  +Q      K+                               +L E  +
Sbjct: 82  RATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLK 141

Query: 133 KEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN 192
           +           +            +  G     G   K+K+  +  A++     L    
Sbjct: 142 RNHGMGDTSIKFEVVPGKNQKSEYVMACGKHTVRGWC-KNKRVGKQLASQKILQLLHPHV 200

Query: 193 PSQGPAL 199
            + G  L
Sbjct: 201 KNWGSLL 207

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 60.9 bits (147), Expect = 6e-11
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
              +L E  Q+     PVYN  +      P F ++V + G  +    A SKK A+  AA+
Sbjct: 24  EVCILHEYMQRVLKVRPVYNFFECENPSEP-FGASVTIDGVTYGSGTASSKKLAKNKAAR 82

Query: 183 VAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADL 223
                L      Q       D +    ++  S++ +   +L
Sbjct: 83  ATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYEL 123

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
               L E  +   Y L      ++G SH   FV  VEV G+ F G G  +KK A+  AA 
Sbjct: 9   PVMELNEKRRGLKYEL----ISETGGSHDKRFVMEVEVDGQKFQGAG-SNKKVAKAYAAL 63

Query: 183 VAYMRLKEPNP 193
            A  +L    P
Sbjct: 64  AALEKLFPDTP 74

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
              +L    +        Y    E G  H  RF  +V +DGQ ++        K A+  A
Sbjct: 9   PVMELNEKRRGLK-----YELISETGGSHDKRFVMEVEVDGQKFQGAG--SNKKVAKAYA 61

Query: 103 AKVALMSL 110
           A  AL  L
Sbjct: 62  ALAALEKL 69

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 69.9 bits (171), Expect = 2e-15
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
            KN L ++  K+ +  P Y     G  +  +F C+V ++G  Y         K+A+  AA
Sbjct: 8   IKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 104 KVALMSL 110
           +  +  L
Sbjct: 67  RDFVNYL 73

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 69.9 bits (171), Expect = 3e-15
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 181
            KN L     K     P Y  +  G  +   F+  V V G  ++G G + +KK A+ +AA
Sbjct: 8   IKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 182 KVAYMRLKEPN 192
           +     L   N
Sbjct: 67  RDFVNYLVRIN 77

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 69.1 bits (169), Expect = 4e-15
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 114 KFQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKS 172
           K     ++   N L  L   +      Y    QSG  HAP F  +V+V G  +   G  S
Sbjct: 9   KILDSKAIDLMNALMRL--NQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASG-PS 65

Query: 173 KKQAEMSAAKVAYMRLKEPNPSQGPA 198
           KK A++  A      +  P       
Sbjct: 66  KKTAKLHVAVKVLQAMGYPTGFDADI 91

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 55.6 bits (134), Expect = 3e-10
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
             N L    Q +  P   Y    + GP HA  F   V +DG TYE+    P+ K A+   
Sbjct: 18  LMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASG--PSKKTAKLHV 73

Query: 103 AKVALMSLSL 112
           A   L ++  
Sbjct: 74  AVKVLQAMGY 83

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 123 YKNVLQELA-----QKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQ 175
            K+ LQ+       + +   +P+Y T +  G SHA T+   V   GE    G+G  S +Q
Sbjct: 3   PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKG-PSIQQ 61

Query: 176 AEMSAAKVAYMRLKEPN 192
           AEM AA  A  +   P 
Sbjct: 62  AEMGAAMDALEKYNFPQ 78

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 44  YKNQLQSY-----TQKKNLPLPMY-SCEREGPPHASRFKCKVTIDGQTY---ESHQFFPT 94
            K+QLQ       T+ K   +P+Y + +  GP HA  +   V   G+     +      +
Sbjct: 3   PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGP----S 58

Query: 95  LKEAEHEAAKVALMSLSL 112
           +++AE  AA  AL   + 
Sbjct: 59  IQQAEMGAAMDALEKYNF 76

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
              +L EL     Y        +SGESHA +FV +V V G+ F G G ++KK A+  AA+
Sbjct: 6   PVMILNELRPGLKYDF----LSESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQ 60

Query: 183 VAYMRLKE 190
            A   +  
Sbjct: 61  SALATVFN 68

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
               L             Y    E G  HA  F   V +DGQ +E        K A+  A
Sbjct: 6   PVMILNELRPGLK-----YDFLSESGESHAKSFVMSVVVDGQFFEGSG--RNKKLAKARA 58

Query: 103 AKVALMSL 110
           A+ AL ++
Sbjct: 59  AQSALATV 66

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 123 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
             + + E+  K       +   ++ G +H   F++   VG  V  G+G   KK ++  AA
Sbjct: 9   PISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEGEG-NGKKVSKKRAA 66

Query: 182 KVAYMRLKE 190
           +   + L++
Sbjct: 67  EKMLVELQK 75

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 56.6 bits (137), Expect = 9e-11
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
             +Q+     K+N+ +       EGP H   F     +     E        K ++  AA
Sbjct: 9   PISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGE--GNGKKVSKKRAA 66

Query: 104 KVALMSL 110
           +  L+ L
Sbjct: 67  EKMLVEL 73

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 65.2 bits (159), Expect = 1e-13
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
              +L E  Q+     PVYN  +  E+ +  F ++V + G  +    A SKK A+  AA+
Sbjct: 18  EVCILHEYMQRVLKVRPVYNFFE-CENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAAR 76

Query: 183 VAYMRL--------KEPNPSQG 196
                L         E  PS G
Sbjct: 77  ATLEILIPDFVKQTSESGPSSG 98

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 44  YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
               L  Y Q+     P+Y+  E E P     F   VTIDG TY S     + K A+++A
Sbjct: 18  EVCILHEYMQRVLKVRPVYNFFECENPSE--PFGASVTIDGVTYGSGTA-SSKKLAKNKA 74

Query: 103 AKVALMSL 110
           A+  L  L
Sbjct: 75  ARATLEIL 82

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114

 Score = 65.3 bits (159), Expect = 2e-13
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 114 KFQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKS 172
           K  ++     KN +  L   E     +Y    Q+G  HAP F  +VEV G+ + GQG +S
Sbjct: 27  KMCKERIPQPKNTVAML--NELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQG-RS 83

Query: 173 KKQAEMSAAKVAYMRLKE-PNPSQGPAL 199
           KK A + AA  A     +  + +    L
Sbjct: 84  KKVARIEAAATALRSFIQFKDGAVLSPL 111

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114

 Score = 57.6 bits (139), Expect = 9e-11
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 44  YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
            KN +    + +     +Y    + GP HA  F   V +DGQ Y       + K A  EA
Sbjct: 36  PKNTVAMLNELR--HGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQG--RSKKVARIEA 91

Query: 103 AKVALMSL 110
           A  AL S 
Sbjct: 92  AATALRSF 99

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 107 LMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEV- 164
           +M   ++KF  +     ++ ++EL + E    P       +  ++      TVEV G+  
Sbjct: 186 MMQPLIEKFSANV---PRSPVRELLEME----PETAKFSPAERTYDGKVRVTVEVVGKGK 238

Query: 165 FSGQGAKSKKQAEMSAAKVAYMRLKE 190
           F G G +S + A+ +AA+ A   LK 
Sbjct: 239 FKGVG-RSYRIAKSAAARRALRSLKA 263

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 41  QHLYKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAE 99
            ++ ++ ++   + +    P  +        +  + +  V + G+         + + A+
Sbjct: 196 ANVPRSPVRELLEME----PETAKFSPAERTYDGKVRVTVEVVGKGK-FKGVGRSYRIAK 250

Query: 100 HEAAKVALMSL 110
             AA+ AL SL
Sbjct: 251 SAAARRALRSL 261

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 64.0 bits (156), Expect = 3e-13
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 123 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
            KN + EL +K       Y    ++G SH   FV  VEV G+ F G G  +KK A+  AA
Sbjct: 16  GKNPVMELNEK--RRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAG-SNKKVAKAYAA 72

Query: 182 KVAYMRLKEPNPSQGPA 198
             A  +L  P+      
Sbjct: 73  LAALEKLF-PDTPLALD 88

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 54.0 bits (130), Expect = 8e-10
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 36  KSRDMQHLYKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPT 94
            S  +    KN +    +K+      Y    E G  H  RF  +V +DGQ ++       
Sbjct: 8   HSHMLTKHGKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAG--SN 63

Query: 95  LKEAEHEAAKVALMSLSLDKFQQDDS 120
            K A+  AA  AL  L  D     D+
Sbjct: 64  KKVAKAYAALAALEKLFPDTPLALDA 89

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 124 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
           KN L +L   E      Y    Q+G  HAP FV +VEV G+VF G G  +KK+A++ AA+
Sbjct: 7   KNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSG-PTKKKAKLHAAE 63

Query: 183 VAYMRLKE 190
            A     +
Sbjct: 64  KALRSFVQ 71

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 45  KNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
           KN L    + K  P   Y    + GP HA  F   V ++GQ +E     PT K+A+  AA
Sbjct: 7   KNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSG--PTKKKAKLHAA 62

Query: 104 KVALMSL 110
           + AL S 
Sbjct: 63  EKALRSF 69

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 67.9 bits (166), Expect = 5e-13
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFS-GQGAKSKKQAEMSAA 181
            KN L EL Q       ++       +  P F   V++G  +    +G  S ++AE  AA
Sbjct: 256 AKNELAELLQINKLGHKLHYR---KLTEMPPFRVEVKIGDILLDEAEG-NSIREAEHRAA 311

Query: 182 KVAYMRLK 189
                  +
Sbjct: 312 MKVLENDE 319

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 11/109 (10%)

Query: 28  ISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY- 86
           ++  + +     +    KN+L    Q   L   ++            F+ +V I      
Sbjct: 240 LAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHY---RKLTEMPPFRVEVKIGDILLD 296

Query: 87  --ESHQFFPTLKEAEHEAAKVALMSLS-LDKFQQDDSVLYKNVLQELAQ 132
             E +    +++EAEH AA   L +   L K+   D     +    + +
Sbjct: 297 EAEGN----SIREAEHRAAMKVLENDELLRKYSVYDLEDGNSKKYSIEE 341

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 58.0 bits (139), Expect = 5e-10
 Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 5/132 (3%)

Query: 58  PLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQQ 117
             P         P  S     V  +G    S     +L  +   A+           F  
Sbjct: 98  DFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPP 157

Query: 118 DDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE 177
                   +L EL     Y        +SGESHA +FV +V V G+ F G G ++KK A+
Sbjct: 158 PSGKNPVMILNELRPGLKYDF----LSESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAK 212

Query: 178 MSAAKVAYMRLK 189
             AA+ A   + 
Sbjct: 213 ARAAQSALATVF 224

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 56.1 bits (134), Expect = 3e-09
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 124 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA- 181
           KN L +L   E      Y    Q+G  HAP FV +VEV G+VF G G  +KK+A++ AA 
Sbjct: 7   KNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSG-PTKKKAKLHAAE 63

Query: 182 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSSSLQSNVTADLHHNIQTAGRLVFNPNSM 240
           K     ++ PN S+    +   +    D++S       T              F   S 
Sbjct: 64  KALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSN 122

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 43.8 bits (102), Expect = 4e-05
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 45  KNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
           KN L    + K  P   Y    + GP HA  F   V ++GQ +E     PT K+A+  AA
Sbjct: 7   KNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSG--PTKKKAKLHAA 62

Query: 104 KVALMS 109
           + AL S
Sbjct: 63  EKALRS 68

>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756

 Score = 59.2 bits (143), Expect = 8e-10
 Identities = 10/113 (8%), Positives = 25/113 (22%), Gaps = 5/113 (4%)

Query: 44  YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKE-AEHE 101
              +              +               C   +     E  +  P       + 
Sbjct: 449 AVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYR 508

Query: 102 AAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPT 153
                     L       SV   +++  LA+      P +   +Q+ ++ +  
Sbjct: 509 LGIQFSHRSGLSGPGGVVSV--IDIMTHLARGLWLGSPGFYVEQQTDKNESAC 559

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 88

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
           Y  ++   AQK+  ++  Y   +        F+   ++G  ++      +K++A+  AAK
Sbjct: 8   YIGLVNSFAQKKKLSVN-YEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAK 66

Query: 183 VAYMRLKEPNPSQGPA 198
            AY +L +  P     
Sbjct: 67  EAYQKLLKSPPKTAGT 82

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 88

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
           Y   + S+ QKK L +    CE        RF CK  I    Y +     T +EA+  AA
Sbjct: 8   YIGLVNSFAQKKKLSVNYEQCE-PNSELPQRFICKCKIGQTMYGT-GSGVTKQEAKQLAA 65

Query: 104 KVALMSLS 111
           K A   L 
Sbjct: 66  KEAYQKLL 73

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 69/419 (16%), Positives = 119/419 (28%), Gaps = 138/419 (32%)

Query: 39  DMQHLYKNQLQSYTQ--KKNL--------PLPMYSCER-----EGPPHASR----FKCKV 79
           + Q+ YK+ L  +      N         P  + S E            S     F   +
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72

Query: 80  TIDGQTYESHQFFPTL-------------KEAEHEAAKVALMSLSLDKFQQDDSVLYK-N 125
           +   +  +  +F   +              E    +    +     D+   D+ V  K N
Sbjct: 73  SKQEEMVQ--KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 126 V------------LQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSK 173
           V            L EL +     + +     SG++        ++V           S 
Sbjct: 131 VSRLQPYLKLRQALLEL-RPAKN-VLIDGVLGSGKT-----WVALDV---------CLSY 174

Query: 174 KQAEMSAAKVAYMRLKEPNPSQGPAL---------VSPDIQAQADYSSSSLQSNVTADLH 224
           K       K+ ++ LK  N S    L         + P+  +++D+ SS+++  +     
Sbjct: 175 KVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRI----- 227

Query: 225 HNIQTAGRLVFNPNSMPK-------VQAEEIRE---------LTTVNTEVA----GYDLS 264
           H+IQ   R +               VQ  +            LTT   +V         +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 265 QFPQPEFSSSSDLSASSGV-EK--GMPSSSLPLE-CTVDPR-VDPIAQSVRADG------ 313
                  S +        +  K        LP E  T +PR +  IA+S+R DG      
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDN 346

Query: 314 -------RTCKIIRV-----RPN--RPNMK----FPEG----SSVLHRDNQWVAWTDGS 350
                  +   II        P   R        FP      + +L      + W D  
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-----LIWFDVI 400

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B Length = 117

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 181
            K  L  L    +     Y T +   +  P  +    VG     G G  ++ K A + AA
Sbjct: 10  AKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 68

Query: 182 KVA 184
           + A
Sbjct: 69  ENA 71

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 Length = 94

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 124 KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAAK 182
           K  L  L    +     Y T +   +  P  +    VG     G G  ++ K A + AA+
Sbjct: 9   KRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAE 67

Query: 183 VA 184
            A
Sbjct: 68  NA 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	353
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.97
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.95
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.92
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.81
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.8
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.79
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.78
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.78
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.77
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.76
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.75
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.75
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.75
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.75
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.74
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.74
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.73
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.73
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.72
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.7
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.7
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.7
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.7
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.68
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.67
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.67
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.67
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.67
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.66
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.66
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.64
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.64
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.64
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.64
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.64
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.63
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.63
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.62
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.62
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.61
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.61
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.58
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.58
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.57
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.57
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.57
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.56
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.54
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.54
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.54
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.52
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.51
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.5
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.5
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.49
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.49
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.49
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.46
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.45
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.45
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.42
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.39
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	99.33
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.31
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.24
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	99.0
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	98.94
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	98.67
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	95.49
2qvw_A	756	GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral	92.74
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	90.13
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	90.02
2db2_A	119	KIAA0890 protein; DSRM domain, structural genomics	80.14

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.97  E-value=6.6e-32  Score=242.13  Aligned_cols=150  Identities=27%  Similarity=0.402  Sum_probs=134.9

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccCC--
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKFQ--  116 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~~--  116 (353)
                      ...|||+.||||||++++. |.|.+ .+.||+|.+.|++.|.|+|..++.|. |.+||+|+|.||+.||+.|......  
T Consensus        11 ~~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~-G~sKK~Aeq~AA~~al~~L~~~~~~~~   88 (179)
T 1qu6_A           11 SAGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGE-GRSKKEAKNAAAKLAVEILNKEKKAVS   88 (179)
T ss_dssp             SSCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEE-CCSSHHHHHHHHHHHHHHHHSCCSCCS
T ss_pred             CCCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecC-CCCHHHHHHHHHHHHHHHHhcccccCC
Confidence            4579999999999999987 89998 47899999999999999999898888 5999999999999999999864321  


Q ss_pred             -----------CCcchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHH
Q 018603          117 -----------QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAY  185 (353)
Q Consensus       117 -----------~d~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL  185 (353)
                                 .....||+++||||||++++.+ .|++.+.||+|.+.|+++|.|+|+.|+.|.|+|||+||+.||+.||
T Consensus        89 p~~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al  167 (179)
T 1qu6_A           89 PLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAY  167 (179)
T ss_dssp             CSSCCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHH
T ss_pred             CccCCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHH
Confidence                       0135799999999999999986 9999889999999999999999999889999999999999999999


Q ss_pred             HHhhCCC
Q 018603          186 MRLKEPN  192 (353)
Q Consensus       186 ~~L~~~~  192 (353)
                      +.|....
T Consensus       168 ~~L~~~~  174 (179)
T 1qu6_A          168 LQILSEE  174 (179)
T ss_dssp             HHHHHCC
T ss_pred             HHHhccc
Confidence            9997654

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.95  E-value=1.6e-27  Score=222.22  Aligned_cols=146  Identities=23%  Similarity=0.218  Sum_probs=121.7

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---  115 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~---  115 (353)
                      ..+|||+.||||||++++..|.|.+ ...||+  +.|++.|.|+|..++.|. |.|||.|++.||+.||..|.....   
T Consensus        20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~-G~SKK~Aeq~AA~~aL~~L~~~~~~~~   96 (232)
T 2yt4_A           20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGT-ASSKKLAKNKAARATLEILIPDFVKQT   96 (232)
T ss_dssp             TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHHSTTTTTC-
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecC-CCCHHHHHHHHHHHHHHHHHhhccccC
Confidence            5689999999999999999999998 467887  899999999999999998 599999999999999999976421   


Q ss_pred             -C-----------------CC----------cchhHHHHHHHHHHHhcCCCCceE--E-eccCCCCCCeEEEEEEECCEE
Q 018603          116 -Q-----------------QD----------DSVLYKNVLQELAQKEAYALPVYN--T-KQSGESHAPTFVSTVEVGGEV  164 (353)
Q Consensus       116 -~-----------------~d----------~~~n~ks~LqE~~qk~~~~~P~Y~--~-~~~Gp~H~~~F~~~V~I~G~~  164 (353)
                       .                 .+          ...|||+.||| ||++++.+|.|+  + .+.||+|.+.|+|.|.   ..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~---~~  172 (232)
T 2yt4_A           97 SEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG---KH  172 (232)
T ss_dssp             -------CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET---TE
T ss_pred             CccccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE---EE
Confidence             0                 00          13589999999 999999999999  4 5789999999999886   44


Q ss_pred             eeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          165 FSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       165 ~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      ++.|.|+|||+|||.||+.||+.|....
T Consensus       173 ~~~G~G~sKK~Aeq~AA~~aL~~L~~~~  200 (232)
T 2yt4_A          173 TVRGWCKNKRVGKQLASQKILQLLHPHV  200 (232)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHSTTC
T ss_pred             EEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence            5679999999999999999999998654

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.92  E-value=2.1e-24  Score=201.44  Aligned_cols=141  Identities=33%  Similarity=0.375  Sum_probs=120.1

Q ss_pred             CCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc-----
Q 018603           41 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK-----  114 (353)
Q Consensus        41 ~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~-----  114 (353)
                      ..+||+.|++|++..  ..|.|.+ .+.||.|.+.|++.|.|+|..+ .|. |.|||.|+|.||+.||+.|....     
T Consensus         3 ~~~~K~~l~~l~e~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~-G~SKK~Aeq~AA~~al~~l~~~~~~~~~   78 (236)
T 2l3j_A            3 PVLPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGS-GPTKKKAKLHAAEKALRSFVQFPNASEA   78 (236)
T ss_dssp             CCCTHHHHHHHHHHC--SSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEE-ESHHHHHHHHHHHHHHHHHTTCSSCSCC
T ss_pred             CCCCcCHHHHHhhcC--CCceEEEEeccCCCCCCeEEEEEEECCEEE-EEe-cCChHHHHHHHHHHHHHHHHhccccccc
Confidence            368899999999863  4689998 5689999999999999999886 677 59999999999999999886411     


Q ss_pred             -------------CC---------------C------------------------------------------------C
Q 018603          115 -------------FQ---------------Q------------------------------------------------D  118 (353)
Q Consensus       115 -------------~~---------------~------------------------------------------------d  118 (353)
                                   +.               .                                                .
T Consensus        79 ~~amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~  158 (236)
T 2l3j_A           79 HLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPP  158 (236)
T ss_dssp             CCSCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCC
T ss_pred             hhhhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCC
Confidence                         00               0                                                0


Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      ...|||++||||     +..|.|++ .+.||+|.++|+|+|.|+|+.+ .|.|+|||+|||.||+.||+.|...
T Consensus       159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~  226 (236)
T 2l3j_A          159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL  226 (236)
T ss_dssp             SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence            136999999999     46789997 6789999999999999999987 7999999999999999999999754

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.81  E-value=1.1e-19  Score=140.11  Aligned_cols=70  Identities=40%  Similarity=0.475  Sum_probs=66.0

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHhh
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLK  189 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G-~SKK~AKq~AA~~AL~~L~  189 (353)
                      ..|||+.||||||++++..|.|++...||+|.+.|+|.|.|+|..++.|.| +|||+|||.||+.||+.|.
T Consensus         2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence            369999999999999999999998556999999999999999999999999 9999999999999999985

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.80  E-value=1.1e-19  Score=141.34  Aligned_cols=71  Identities=39%  Similarity=0.630  Sum_probs=67.3

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      ..|||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|..
T Consensus         3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A            3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence            369999999999999999999997 67999999999999999999999999999999999999999999975

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.79  E-value=2.7e-19  Score=136.47  Aligned_cols=66  Identities=30%  Similarity=0.368  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhh
Q 018603          123 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK  189 (353)
Q Consensus       123 ~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~  189 (353)
                      ||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|.
T Consensus         2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence            899999999999999999997 67899999999999999998 8999999999999999999999986

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.78  E-value=4.8e-19  Score=141.77  Aligned_cols=74  Identities=27%  Similarity=0.314  Sum_probs=67.7

Q ss_pred             CcchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          118 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       118 d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      ....|||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...+
T Consensus        12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~p   86 (88)
T 3adl_A           12 PRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTVP   86 (88)
T ss_dssp             CTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHccC
Confidence            34679999999999999999999997 67899999999999999998 8999999999999999999999998643

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.78  E-value=6.8e-19  Score=141.14  Aligned_cols=73  Identities=29%  Similarity=0.367  Sum_probs=68.2

Q ss_pred             CcchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          118 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       118 d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      ....|||++||||||++++..|.|++ .+.||+|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus        13 ~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~   86 (89)
T 2cpn_A           13 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGP   86 (89)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence            45789999999999999999999997 67899999999999999998 899999999999999999999999754

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.77  E-value=1.1e-18  Score=139.92  Aligned_cols=72  Identities=25%  Similarity=0.244  Sum_probs=67.0

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      ...|||++||||||++++..|.|++ .+.||+|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...
T Consensus         4 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~   76 (89)
T 1uhz_A            4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhcc
Confidence            3579999999999999999999997 67899999999999999997 889999999999999999999999754

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.76  E-value=5.2e-19  Score=140.70  Aligned_cols=71  Identities=32%  Similarity=0.339  Sum_probs=65.4

Q ss_pred             hhHHHHHHHHHHH-----hcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          121 VLYKNVLQELAQK-----EAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       121 ~n~ks~LqE~~qk-----~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      +|||+.||||||+     +++..|.|++ .+.||+|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|...
T Consensus         1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~   77 (85)
T 2khx_A            1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP   77 (85)
T ss_dssp             CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred             CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence            4899999999998     4677899998 678999999999999999999999999999999999999999988654

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.75  E-value=2.3e-18  Score=136.57  Aligned_cols=72  Identities=32%  Similarity=0.372  Sum_probs=66.1

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      ...|||+.||||||+++ ..|.|++ .+.||+|.+.|+|.|.|+| .++.|.|+|||+|||.||+.||+.|....
T Consensus         6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~   78 (84)
T 2dix_A            6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKANA   78 (84)
T ss_dssp             CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhccc
Confidence            45799999999999998 6899997 6789999999999999999 88999999999999999999999997543

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.75  E-value=4.9e-19  Score=137.52  Aligned_cols=70  Identities=19%  Similarity=0.323  Sum_probs=65.7

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      ...|||+.||||||++++. |.|++ .+.||+|.+.|+|.|.|+| .++.|.|+|||+|||.||+.||+.|..
T Consensus         5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~   75 (76)
T 1ekz_A            5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            4579999999999999999 99997 6789999999999999999 889999999999999999999999864

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.75  E-value=2.5e-18  Score=139.96  Aligned_cols=74  Identities=27%  Similarity=0.331  Sum_probs=68.5

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP  193 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~  193 (353)
                      ...|||++||||||++++. |.|++ .+.||+|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|.....
T Consensus        12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~   86 (97)
T 1x49_A           12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK   86 (97)
T ss_dssp             CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcC
Confidence            5689999999999999997 79996 67899999999999999999999999999999999999999999986543

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.75  E-value=2.4e-18  Score=141.53  Aligned_cols=76  Identities=36%  Similarity=0.449  Sum_probs=66.2

Q ss_pred             CCcchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHhhCCC
Q 018603          117 QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       117 ~d~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G-~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      .....|||+.||||||++++..|.|++...||+|.+.|++.|.|+|+.++.|.| +|||+|||.||+.||+.|....
T Consensus        13 ~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~   89 (103)
T 2l2n_A           13 VSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS   89 (103)
T ss_dssp             ------CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence            345789999999999999999999998656999999999999999999999999 9999999999999999998654

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.74  E-value=4.6e-18  Score=136.01  Aligned_cols=72  Identities=26%  Similarity=0.446  Sum_probs=66.8

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEEeccCCCCCC-eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAP-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP  193 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~-~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~  193 (353)
                      ..|||++||||||++++.+ .|+ .+.||+|.+ +|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|....+
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~   77 (88)
T 1x48_A            5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPP   77 (88)
T ss_dssp             SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4699999999999999975 999 889999999 79999999999999999999999999999999999987643

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.74  E-value=3.4e-18  Score=137.20  Aligned_cols=74  Identities=32%  Similarity=0.403  Sum_probs=59.0

Q ss_pred             CCcchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          117 QDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       117 ~d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      .+..+|||+.||||||+++. .|.|++ .+.||+|.+.|++.|.|+|+ ++.|.|+|||+|||.||+.||+.|....
T Consensus        10 ~~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~   84 (90)
T 3llh_A           10 ANPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGS   84 (90)
T ss_dssp             ---CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC---
T ss_pred             cccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence            34578999999999999875 799997 78999999999999999998 6789999999999999999999998653

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.73  E-value=2.8e-18  Score=140.23  Aligned_cols=71  Identities=25%  Similarity=0.259  Sum_probs=66.5

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECC-EEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGG-EVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G-~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      ..|||++||||||++ +..|.|++.+.||+|.++|+|.|.|+| +.++.|.|+|||+|||+||+.||+.|...
T Consensus         5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~   76 (99)
T 1whq_A            5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI   76 (99)
T ss_dssp             CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence            469999999999999 888999998889999999999999999 68899999999999999999999999754

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.73  E-value=6.3e-18  Score=130.34  Aligned_cols=68  Identities=38%  Similarity=0.487  Sum_probs=62.8

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      ..|||+.||||||+  +..|.|++ .+.||+|.+.|++.|.|+|..+ .|.|+|||+|||+||+.||+.|..
T Consensus         3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~   71 (73)
T 2b7t_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence            36899999999995  77899997 6789999999999999999987 899999999999999999999975

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.72  E-value=1.4e-17  Score=139.18  Aligned_cols=72  Identities=25%  Similarity=0.281  Sum_probs=67.2

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV-----GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I-----~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      ..|||++||||||++++ .|.|++.+.||+|.+.|+|.|.|     +|+.++.|.|+|||+|||.||+.||+.|....
T Consensus        25 ~~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~  101 (113)
T 1uil_A           25 LENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLG  101 (113)
T ss_dssp             HHHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcC
Confidence            47999999999999999 89999888999999999999999     68889999999999999999999999998653

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.70  E-value=7.3e-18  Score=136.40  Aligned_cols=69  Identities=22%  Similarity=0.146  Sum_probs=63.5

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHhh
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLK  189 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~-~~~~G~G~SKK~AKq~AA~~AL~~L~  189 (353)
                      ..|||+.||||||+++ ..|.|++...||+|++.|++.|.|+|. .++.|.|+|||+|+|.||+.||..|.
T Consensus         5 ~~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~   74 (94)
T 1t4n_A            5 DMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK   74 (94)
T ss_dssp             CHHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred             CCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            5799999999999974 579999966699999999999999999 89999999999999999999998775

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.70  E-value=5.2e-17  Score=125.10  Aligned_cols=70  Identities=44%  Similarity=0.675  Sum_probs=65.4

Q ss_pred             CCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeeccccc-CCcchhHHHHHHHHHHHhh
Q 018603           41 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFF-PTLKEAEHEAAKVALMSLS  111 (353)
Q Consensus        41 ~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg-~SKK~Akq~AAk~AL~~L~  111 (353)
                      ..|||+.||||||++++.+|.|.+...||+|.+.|++.|.|+|..++.|. | .|||.|++.||+.||..|.
T Consensus         2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~-G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP-GFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCS-CBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeee-ccCCHHHHHHHHHHHHHHHhh
Confidence            37999999999999999999999966699999999999999999999888 6 8999999999999999885

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.70  E-value=4.8e-17  Score=132.32  Aligned_cols=71  Identities=30%  Similarity=0.395  Sum_probs=64.9

Q ss_pred             CcchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          118 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       118 d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      ....|||+.||||||++  ..|.|++ .+.||+|.+.|++.|.|+|+.+ .|.|+|||+|||.||+.||+.|...
T Consensus        13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~~   84 (97)
T 2dmy_A           13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYP   84 (97)
T ss_dssp             CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCCC
Confidence            35789999999999996  6789997 5789999999999999999998 8999999999999999999999653

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.70  E-value=7.7e-17  Score=131.35  Aligned_cols=72  Identities=26%  Similarity=0.264  Sum_probs=67.0

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      +..|||+.||||||++++..|.|++ .+.||+  +.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|....
T Consensus        14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~   86 (98)
T 1x47_A           14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDF   86 (98)
T ss_dssp             TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSS
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhhh
Confidence            6789999999999999999999997 568987  99999999999999999999999999999999999998553

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.68  E-value=6.1e-17  Score=130.40  Aligned_cols=70  Identities=33%  Similarity=0.344  Sum_probs=64.0

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      ..++|+.||||||+++  .|.|++ .+.||+|.++|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|....
T Consensus        13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~   83 (91)
T 2l33_A           13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDT   83 (91)
T ss_dssp             CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCC
T ss_pred             ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcC
Confidence            3578999999999998  789997 6789999999999999999987 89999999999999999999998654

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.67  E-value=1.3e-16  Score=123.98  Aligned_cols=70  Identities=37%  Similarity=0.608  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           42 HLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        42 ~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      .|||+.||||||++++.+|.|.+ .+.||+|.+.|++.|.|+|..++.|. |.|||.|+|.||+.||..|..
T Consensus         4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~-G~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A            4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAA-TRTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCC-BSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEec-cCCHHHHHHHHHHHHHHHHhh
Confidence            68999999999999999999998 57899999999999999999999998 599999999999999999864

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.67  E-value=4.6e-17  Score=136.29  Aligned_cols=69  Identities=22%  Similarity=0.146  Sum_probs=62.9

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCE-EeeecccCCHHHHHHHHHHHHHHHhh
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGE-VFSGQGAKSKKQAEMSAAKVAYMRLK  189 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~-~~~~G~G~SKK~AKq~AA~~AL~~L~  189 (353)
                      ..|||+.||||||+.+ ..|.|++...||+|.+.|++.|.|+|. .++.|.|.|||+|+|.||+.||..|.
T Consensus         7 ~~D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~   76 (117)
T 1t4o_A            7 DMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK   76 (117)
T ss_dssp             CTTHHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred             CCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            5799999999999954 679999855599999999999999999 89999999999999999999998764

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.67  E-value=6.9e-17  Score=144.45  Aligned_cols=109  Identities=22%  Similarity=0.278  Sum_probs=86.0

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGPA  198 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~~~~~~  198 (353)
                      ..|||++||||||++++. |.|++ .+.||+|.+.|++.|.|+|+.++.|.|+|||+|||+||+.||+.|........+.
T Consensus        12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~   90 (179)
T 1qu6_A           12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSPL   90 (179)
T ss_dssp             SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSCCSCS
T ss_pred             CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcccccCCCc
Confidence            478999999999999997 89997 6789999999999999999989999999999999999999999998765432222


Q ss_pred             ccCCCccccccccccccccccccccccccCCC
Q 018603          199 LVSPDIQAQADYSSSSLQSNVTADLHHNIQTA  230 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~l~~~~q~~~~~~  230 (353)
                      ..... ...+++...|..+.|+++.|++..+.
T Consensus        91 ~~~~~-~~~e~~~~~n~~~~L~E~~qk~~~~~  121 (179)
T 1qu6_A           91 LLTTT-NSSEGLSMGNYIGLINRIAQKKRLTV  121 (179)
T ss_dssp             SCCCS-CSSCCCCCCCCHHHHHHHHHHSCCEE
T ss_pred             cCCCC-CcccccCCCCHHHHHHHHHHhcCCcc
Confidence            11100 01123344467889999998876643

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.67  E-value=1.4e-16  Score=133.24  Aligned_cols=69  Identities=30%  Similarity=0.385  Sum_probs=63.6

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP  193 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~  193 (353)
                      ...|||++||||||+     |.|++ .+.||+|+++|+++|.|+|+.+ .|.|+|||+|||+||+.||+.|.....
T Consensus        35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~  104 (114)
T 2ljh_A           35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKD  104 (114)
T ss_dssp             CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTT
T ss_pred             CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCC
Confidence            468999999999984     89997 6789999999999999999999 899999999999999999999987654

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.66  E-value=1.7e-17  Score=152.72  Aligned_cols=136  Identities=23%  Similarity=0.228  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHH--HHHHHHHHhhcccC----CCC
Q 018603           45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHE--AAKVALMSLSLDKF----QQD  118 (353)
Q Consensus        45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~--AAk~AL~~L~~~~~----~~d  118 (353)
                      ...|.++|.+.++.  .|.....|...       -.+.++.|++..||.+.+.+...  |.+.+...+.+...    ...
T Consensus        77 ~~~la~~a~~l~l~--~~l~~~~~~~~-------~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~~~~~~~~~~~  147 (221)
T 2nug_A           77 EEFFNLLAQKLELH--KFIRIKRGKIN-------ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGR  147 (221)
T ss_dssp             HHHHHHHHHTTTGG--GTCBSCTTCCC-------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcChH--HhhccCCCccc-------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhhhhccc
Confidence            46789999998865  44443333322       34567788888888888876655  55554444433211    122


Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      ...|||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|+ ++.|.|+|||+|||.||+.||+.|..
T Consensus       148 ~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~~  219 (221)
T 2nug_A          148 VKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLEE  219 (221)
T ss_dssp             SCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred             cccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhhc
Confidence            3579999999999999999999997 67899999999999999999 99999999999999999999999963

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.66  E-value=2e-16  Score=134.91  Aligned_cols=71  Identities=32%  Similarity=0.323  Sum_probs=65.7

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHhhCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G-~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      ...|||+.||||||++++..|.|++...  +|.+.|+|.|.|+|+.|+.|.| +|||+|||+||+.||+.|...
T Consensus        24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~   95 (128)
T 1whn_A           24 PQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP   95 (128)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred             cCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence            4579999999999999999999998655  8999999999999999999999 999999999999999999743

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.64  E-value=3.4e-16  Score=119.18  Aligned_cols=67  Identities=24%  Similarity=0.363  Sum_probs=62.4

Q ss_pred             CHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhh
Q 018603           43 LYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLS  111 (353)
Q Consensus        43 npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~  111 (353)
                      .||+.||||||++++..|.|.+ .+.||+|.+.|++.|.|+|. ++.|. |.|||.|++.||+.||..|.
T Consensus         1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~-G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGS-GTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEee-cCCHHHHHHHHHHHHHHHHh
Confidence            4899999999999999999998 57899999999999999997 88888 59999999999999999885

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.64  E-value=3.2e-16  Score=128.83  Aligned_cols=82  Identities=39%  Similarity=0.547  Sum_probs=65.3

Q ss_pred             cccccccccCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeeccccc-CCcchhHHHHHHHHHHHh
Q 018603           32 NDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFF-PTLKEAEHEAAKVALMSL  110 (353)
Q Consensus        32 ~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg-~SKK~Akq~AAk~AL~~L  110 (353)
                      .|........+|||+.||||||++++.+|.|.+...||+|.+.|++.|.|+|..++.|. | .|||.|+|.||+.||..|
T Consensus         7 ~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~-G~~SKK~Aeq~AA~~AL~~L   85 (103)
T 2l2n_A            7 TDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP-GFFNRKAAEQSAAEVALREL   85 (103)
T ss_dssp             ------------CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCS-CBSSHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEee-cCCCHHHHHHHHHHHHHHHH
Confidence            34444456789999999999999999999999966699999999999999999999888 6 899999999999999999


Q ss_pred             hccc
Q 018603          111 SLDK  114 (353)
Q Consensus       111 ~~~~  114 (353)
                      ....
T Consensus        86 ~~~~   89 (103)
T 2l2n_A           86 AKSS   89 (103)
T ss_dssp             HHHC
T ss_pred             hccc
Confidence            8643

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.64  E-value=6.4e-16  Score=123.58  Aligned_cols=73  Identities=22%  Similarity=0.252  Sum_probs=66.4

Q ss_pred             ccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           39 DMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        39 ~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      ....|||+.||||||++++.+|.|++ .+.||+|.+.|++.|.|+|. ++.|. |.|||+|+|.||+.||..|...
T Consensus        12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~-G~SKK~Aeq~AA~~AL~~L~~~   85 (88)
T 3adl_A           12 PRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGS-GTSKKLAKRNAAAKMLLRVHTV   85 (88)
T ss_dssp             CTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEe-eCCHHHHHHHHHHHHHHHHHcc
Confidence            35689999999999999999999998 57899999999999999997 88888 5999999999999999999753

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.64  E-value=1.6e-16  Score=149.18  Aligned_cols=144  Identities=22%  Similarity=0.245  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---CCCcch
Q 018603           45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSV  121 (353)
Q Consensus        45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~---~~d~~~  121 (353)
                      ...|.++|.+.++.  .|.....|..... ....-++.++.|++..||.+.+.+...|.+++...+.+...   ......
T Consensus       103 ~~~la~~a~~lgL~--~~l~~~~~e~~~~-~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~~~~~~  179 (252)
T 1o0w_A          103 EEVLAMVSRKMNLG--KFLFLGKGEEKTG-GRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLF  179 (252)
T ss_dssp             HHHHHHHHHHTTHH--HHCBCCHHHHHTT-GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHcCcH--HhhccCchhhhcC-CCCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            56788999998865  3443211110000 00112456778999888999998887666555555443321   122357


Q ss_pred             hHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          122 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       122 n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      |||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|+.++.|.|.|||+|||.||+.||+.|..+
T Consensus       180 dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~  250 (252)
T 1o0w_A          180 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE  250 (252)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999997 578999999999999999999999999999999999999999999754

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.64  E-value=6.1e-16  Score=123.93  Aligned_cols=73  Identities=23%  Similarity=0.268  Sum_probs=66.7

Q ss_pred             ccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           39 DMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        39 ~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      ...+|||+.||||||++++.+|.|.+ .+.||+|.+.|++.|.|+|. ++.|. |.+||+|++.||+.||..|...
T Consensus        13 ~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~-G~SKK~Aeq~AA~~AL~~L~~~   86 (89)
T 2cpn_A           13 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGS-GTSKKLAKRNAAAKMLLRVSGP   86 (89)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEee-eCCHHHHHHHHHHHHHHHHHhh
Confidence            34689999999999999999999998 57899999999999999997 88888 5999999999999999998753

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.63  E-value=3.8e-16  Score=121.16  Aligned_cols=70  Identities=19%  Similarity=0.224  Sum_probs=64.7

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      ..+|||+.||||||++++. |.|.+ .+.||+|.+.|++.|.|+| .++.|. |.|||.|+|.||+.||..|..
T Consensus         5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~-G~sKK~Aeq~AA~~aL~~L~~   75 (76)
T 1ekz_A            5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGE-GNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEEC-CCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEe-eCCHHHHHHHHHHHHHHHHhh
Confidence            4589999999999999999 99998 5789999999999999999 888898 599999999999999998864

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.63  E-value=8.3e-16  Score=123.16  Aligned_cols=71  Identities=21%  Similarity=0.261  Sum_probs=65.4

Q ss_pred             CCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           41 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        41 ~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      .+|||+.||||||++++.+|.|.+ .+.||+|.+.|++.|.|+|. ++.|. |.|||+|+|.||+.||+.|...
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~-G~SKK~Aeq~AA~~AL~~L~~~   76 (89)
T 1uhz_A            5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGT-GPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEe-eCCHHHHHHHHHHHHHHHHhcc
Confidence            579999999999999999999998 57899999999999999996 88888 5999999999999999999753

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.62  E-value=1.6e-15  Score=120.08  Aligned_cols=71  Identities=24%  Similarity=0.337  Sum_probs=64.7

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      ..+|||+.||||||+++ ..|.|.+ .+.||.|.+.|++.|.|+| .++.|. |.+||+|+|.||+.||..|...
T Consensus         6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~-G~SKK~Aeq~AA~~aL~~L~~~   77 (84)
T 2dix_A            6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGE-GTSKKLAKHRAAEAAINILKAN   77 (84)
T ss_dssp             CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEEC-SSCTTHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEee-eCCHHHHHHHHHHHHHHHHhcc
Confidence            45899999999999998 5799998 5789999999999999999 888898 5999999999999999999754

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.62  E-value=8.9e-16  Score=123.08  Aligned_cols=73  Identities=30%  Similarity=0.379  Sum_probs=58.0

Q ss_pred             ccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603           39 DMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK  114 (353)
Q Consensus        39 ~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~  114 (353)
                      ...+|||+.||||||+++. .|.|.+ .+.||+|++.|++.|.|+|. ++.|. |.|||+|||.||+.||..|....
T Consensus        11 ~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~-G~SKK~Aeq~AA~~aL~~L~~~~   84 (90)
T 3llh_A           11 NPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQ-GPSKKAAKHKAAEVALKHLKGGS   84 (90)
T ss_dssp             --CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEE-ESSHHHHHHHHHHHHHHHHC---
T ss_pred             ccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEE-eCCHHHHHHHHHHHHHHHHHhcc
Confidence            4579999999999999985 699998 68899999999999999997 57787 59999999999999999997653

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.61  E-value=4.4e-16  Score=123.75  Aligned_cols=70  Identities=29%  Similarity=0.408  Sum_probs=63.7

Q ss_pred             CCHHHHHHHHHHH-----cCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           42 HLYKNQLQSYTQK-----KNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        42 ~npKS~LqE~~QK-----~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      +|||+.||||||+     .++..|.|.+ .+.||+|.+.|++.|.|+|..++.|. |.|||+|++.||+.||..|..
T Consensus         1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~-G~SKK~AEq~AA~~AL~~L~~   76 (85)
T 2khx_A            1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQAEMGAAMDALEKYNF   76 (85)
T ss_dssp             CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEE-ESSHHHHHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEe-eCCHHHHHHHHHHHHHHHHhH
Confidence            5899999999998     4677899998 57899999999999999999999998 599999999999999998864

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.61  E-value=1e-15  Score=117.19  Aligned_cols=65  Identities=34%  Similarity=0.392  Sum_probs=59.6

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      ..||++.|||||     ..|.|++ .+.||+|.+.|+|.|.|+|+.+ .|.|+|||+|||.||+.||+.|..
T Consensus         3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~   68 (71)
T 2b7v_A            3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN   68 (71)
T ss_dssp             SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHh
Confidence            579999999994     5789997 6789999999999999999886 799999999999999999999864

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.58  E-value=1.8e-15  Score=123.03  Aligned_cols=72  Identities=29%  Similarity=0.469  Sum_probs=66.4

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      ...|||+.||||||++++. |.|++ .+.||+|.+.|++.|.|+|..++.|. |.+||+|+|.||+.||+.|...
T Consensus        12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~   84 (97)
T 1x49_A           12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAK-GRSKQEARNAAAKLAVDILDNE   84 (97)
T ss_dssp             CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEE-ESSHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEe-eCCHHHHHHHHHHHHHHHHHhh
Confidence            4689999999999999997 79997 57899999999999999999999998 5999999999999999999764

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.58  E-value=5.9e-17  Score=152.03  Aligned_cols=143  Identities=23%  Similarity=0.164  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcccC---CCCcch
Q 018603           45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDKF---QQDDSV  121 (353)
Q Consensus        45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~~---~~d~~~  121 (353)
                      ...|.+++.+.++.  .|.....|..... ....-.+.++.|++.+||.+.+.+...|.+++...+.+...   ......
T Consensus       101 ~~~La~~a~~lgL~--~~l~~~~~e~~~~-g~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~~l~~~~~~~~~~  177 (248)
T 3n3w_A          101 EKSFAKIANSLNLG--DFILMSVAEENNG-GKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIK  177 (248)
T ss_dssp             HHHHHHHHHHTTGG--GTCBCCHHHHHTT-GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHHHcCcH--HHhhcCchhhhcC-CCCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhhcccccc
Confidence            46789999999865  4443221110000 00112356778999999999999887666666555554432   123468


Q ss_pred             hHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          122 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       122 n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      |||+.||||||++++..|.|++ .+.||+|.+.|+|.|.|+|+.++.|.|.|||+|||.||+.||+.|..
T Consensus       178 dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~  247 (248)
T 3n3w_A          178 DYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA  247 (248)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             CHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999997 68899999999999999999999999999999999999999999864

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.57  E-value=1.9e-15  Score=123.37  Aligned_cols=72  Identities=22%  Similarity=0.268  Sum_probs=66.0

Q ss_pred             CCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEcc-EeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603           41 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDG-QTYESHQFFPTLKEAEHEAAKVALMSLSLDK  114 (353)
Q Consensus        41 ~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g-~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~  114 (353)
                      .+|||+.||||||++ +..|.|.+.+.||.|.+.|++.|.|+| ..++.|. |.|||+|+|.||+.||+.|....
T Consensus         5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~~   77 (99)
T 1whq_A            5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGN-STNKKDAQSNAARDFVNYLVRIN   77 (99)
T ss_dssp             CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEE-ESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEec-cCCHHHHHHHHHHHHHHHHHhhC
Confidence            479999999999999 788999997789999999999999999 6888888 59999999999999999997643

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.57  E-value=4.7e-15  Score=118.49  Aligned_cols=71  Identities=31%  Similarity=0.353  Sum_probs=65.2

Q ss_pred             CCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCc-cEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603           41 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHAS-RFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK  114 (353)
Q Consensus        41 ~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~-~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~  114 (353)
                      .+|||+.||||||++++.+ .|+ ...||+|.+ +|++.|.|+|..++.|. |.|||+|+|.||+.||+.|....
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~~   76 (88)
T 1x48_A            5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGS-GVTKQEAKQLAAKEAYQKLLKSP   76 (88)
T ss_dssp             SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEE-ESSHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEee-cCCHHHHHHHHHHHHHHHHHhcC
Confidence            4799999999999999975 999 888999999 79999999999999998 59999999999999999997653

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.57  E-value=7.7e-15  Score=113.78  Aligned_cols=69  Identities=30%  Similarity=0.290  Sum_probs=58.6

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP  193 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~  193 (353)
                      ..+||++.|+|++     ..|.|++ .+.||+|.++|++.|.|+|..+ .|.|+|||+|||.||+.||+.|....+
T Consensus         5 ~~K~pl~~L~q~~-----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~~~   74 (75)
T 3p1x_A            5 HGKNPVMELNEKR-----RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTP   74 (75)
T ss_dssp             -CCCHHHHHHHHS-----TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTTCC
T ss_pred             CCCCHHHHHHHcC-----CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHccCC
Confidence            3456666666653     4789997 6799999999999999999998 899999999999999999999987653

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.56  E-value=4.6e-15  Score=114.25  Aligned_cols=69  Identities=33%  Similarity=0.364  Sum_probs=61.9

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      ...|||+.||||||+  +..|.|.+ .+.||+|++.|++.|.|+|..+ .|. |.|||+|+|.||+.||..|..
T Consensus         2 k~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~-G~SKK~Aeq~AA~~al~~L~~   71 (73)
T 2b7t_A            2 GPVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGS-GPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             CSSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEE-ESSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-Eee-cCCHHHHHHHHHHHHHHHHhc
Confidence            357999999999996  56789998 5789999999999999999887 787 599999999999999998874

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.54  E-value=1.1e-14  Score=121.57  Aligned_cols=72  Identities=22%  Similarity=0.246  Sum_probs=65.6

Q ss_pred             CCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEE-----ccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603           41 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTI-----DGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK  114 (353)
Q Consensus        41 ~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I-----~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~  114 (353)
                      .+|||+.||||||++++ .|.|.+...||+|.+.|++.|.|     ++..++.|. |.+||.|+|.||+.||..|....
T Consensus        25 ~~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~-G~SKK~AEq~AA~~AL~~L~~~~  101 (113)
T 1uil_A           25 LENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREH-GSNKKLAAQSCALSLVRQLYHLG  101 (113)
T ss_dssp             HHHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECC-CSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHhcC
Confidence            36999999999999999 89999878999999999999999     588888888 59999999999999999987653

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.54  E-value=2.8e-15  Score=121.22  Aligned_cols=70  Identities=16%  Similarity=0.016  Sum_probs=62.7

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccE-eeecccccCCcchhHHHHHHHHHHHhh
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQ-TYESHQFFPTLKEAEHEAAKVALMSLS  111 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~-~~~ag~Gg~SKK~Akq~AAk~AL~~L~  111 (353)
                      ..+|||+.||||+|+.+ ..|.|.+...||+|++.|++.|.|+|. .++.|. |.|||+|+|.||+.||..|.
T Consensus         4 ~~~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~-G~SKK~AEQ~AA~~AL~~l~   74 (94)
T 1t4n_A            4 LDMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGV-GRNIKIAGIRAAENALRDKK   74 (94)
T ss_dssp             SCHHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEE-ESSHHHHHHHHHHHHHHCHH
T ss_pred             CCCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEE-eCCHHHHHHHHHHHHHHHHH
Confidence            45799999999999975 579999976699999999999999998 899998 59999999999999997654

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.54  E-value=1.9e-16  Score=147.43  Aligned_cols=145  Identities=22%  Similarity=0.199  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHc---CCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc---CCCC
Q 018603           45 KNQLQSYTQKK---NLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK---FQQD  118 (353)
Q Consensus        45 KS~LqE~~QK~---gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~---~~~d  118 (353)
                      ...|.++|.+.   ++.  .|.....|...... ...-++.++.|++..||.+.+.+...|.+.+...+.+..   ...+
T Consensus        83 ~~~la~~a~~l~~~gL~--~~l~~~~~e~~~~~-~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~~~~  159 (242)
T 2a11_A           83 TQALADVARRLCAEGLG--VHVLLGRGEANTGG-ADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLG  159 (242)
T ss_dssp             HHHHHHHHHHHSSSCSG--GGCBCCHHHHHTTG-GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHTTC--
T ss_pred             HHHHHHHHHHhhhhChH--HHhhcCchhhhcCC-CCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence            45688999999   765  44432221100000 001244567889988899999887755555554443321   1122


Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      ...|||+.||||||++++..|.|++...||+|.+.|+|.|.|+|+.++.|.|.|||+|||.||+.||+.|....
T Consensus       160 ~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~  233 (242)
T 2a11_A          160 AGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD  233 (242)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             ccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence            46799999999999999999999986699999999999999999999999999999999999999999997653

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.52  E-value=2.4e-14  Score=116.56  Aligned_cols=71  Identities=34%  Similarity=0.366  Sum_probs=65.1

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      ..+|||+.||||||++++.+|.|.+ .+.||+  +.|++.|.|+|..++.|. |.|||+|+|.||+.||..|...
T Consensus        14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~-G~SKK~Aeq~AA~~AL~~L~~~   85 (98)
T 1x47_A           14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGT-ASSKKLAKNKAARATLEILIPD   85 (98)
T ss_dssp             TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEee-eCCHHHHHHHHHHHHHHHHHhh
Confidence            5689999999999999999999998 467887  899999999999999998 5999999999999999999754

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.51  E-value=2.2e-14  Score=116.60  Aligned_cols=70  Identities=29%  Similarity=0.351  Sum_probs=63.0

Q ss_pred             ccCCCHHHHHHHHHHHcCCCCCeeeee-ecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           39 DMQHLYKNQLQSYTQKKNLPLPMYSCE-REGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        39 ~~~~npKS~LqE~~QK~gl~~P~Y~l~-~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      ...+|||+.||||||++  ..|.|.+. +.||.|.+.|++.|.|+|..+ .|. |.|||+|+|.||+.||..|..
T Consensus        13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~-G~SKK~Aeq~AA~~aL~~L~~   83 (97)
T 2dmy_A           13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EAS-GPSKKTAKLHVAVKVLQAMGY   83 (97)
T ss_dssp             CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEe-eCCHHHHHHHHHHHHHHHhCC
Confidence            35689999999999996  57899984 689999999999999999988 787 599999999999999999964

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.50  E-value=3.3e-14  Score=133.33  Aligned_cols=101  Identities=25%  Similarity=0.244  Sum_probs=81.9

Q ss_pred             hhhhc-chhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeee
Q 018603           10 AVQVN-ARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYE   87 (353)
Q Consensus        10 ~~~~~-~~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~   87 (353)
                      |+|++ +.+.+..| +.+++.+.++........+|||+.||||||+.++..|.|.+ .+.||.|.+.|++.|.|+|..++
T Consensus       147 Aiyld~g~~~~~~~-i~~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~  225 (252)
T 1o0w_A          147 AIYLDQGYEKIKEL-FEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIA  225 (252)
T ss_dssp             HHHHHHCHHHHHHH-HHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEE
T ss_pred             HHHHcCCHHHHHHH-HHHHHHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEE
Confidence            55666 44555554 55667666653333244689999999999999998899998 46899999999999999999999


Q ss_pred             cccccCCcchhHHHHHHHHHHHhhc
Q 018603           88 SHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        88 ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      .|. |.|||+||+.||+.||+.|..
T Consensus       226 ~G~-G~SKK~Aeq~AA~~AL~~L~~  249 (252)
T 1o0w_A          226 TGK-GRTKKEAEKEAARIAYEKLLK  249 (252)
T ss_dssp             EEE-ESSHHHHHHHHHHHHHHHHC-
T ss_pred             EEe-eCCHHHHHHHHHHHHHHHHhh
Confidence            998 599999999999999999864

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.50  E-value=1.6e-14  Score=120.87  Aligned_cols=70  Identities=16%  Similarity=0.016  Sum_probs=62.4

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccE-eeecccccCCcchhHHHHHHHHHHHhh
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQ-TYESHQFFPTLKEAEHEAAKVALMSLS  111 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~-~~~ag~Gg~SKK~Akq~AAk~AL~~L~  111 (353)
                      ..+|||+.||||||+.+ ..|.|.+...||+|++.|++.|.|+|. .++.|. |.|||+|+|.||+.||..+.
T Consensus         6 ~~~D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~-G~SKK~AEQ~AA~~AL~~l~   76 (117)
T 1t4o_A            6 LDMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGV-GRNIKIAGIRAAENALRDKK   76 (117)
T ss_dssp             CCTTHHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEE-ESSHHHHHHHHHHHHHHCHH
T ss_pred             CCCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEE-eCCHHHHHHHHHHHHHHHHH
Confidence            45799999999999954 679999865699999999999999998 899998 59999999999999987554

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.49  E-value=5.1e-14  Score=119.95  Aligned_cols=70  Identities=31%  Similarity=0.354  Sum_probs=64.8

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeeccccc-CCcchhHHHHHHHHHHHhhc
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFF-PTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg-~SKK~Akq~AAk~AL~~L~~  112 (353)
                      ..+|||+.||||||++++.+|.|.+...  .|.+.|++.|.|+|..++.|. | .|||+|||.||+.||+.|..
T Consensus        24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~-G~~SKK~AEQ~AA~~AL~~L~~   94 (128)
T 1whn_A           24 PQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTL-WDKSKKLAEQTAAIVCLRSQGL   94 (128)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESS-CBSSHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEe-ccCCHHHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999998655  899999999999999999988 6 99999999999999999964

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.49  E-value=5.8e-14  Score=130.60  Aligned_cols=71  Identities=27%  Similarity=0.282  Sum_probs=66.6

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      ...|||+.||||||++++..|.|++ .+.||+  +.|+|.|.|+|..|+.|.|+|||+|||.||+.||+.|...
T Consensus        20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~   91 (232)
T 2yt4_A           20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD   91 (232)
T ss_dssp             TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence            5689999999999999999999998 678987  9999999999999999999999999999999999999875

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.49  E-value=3.1e-14  Score=130.86  Aligned_cols=100  Identities=27%  Similarity=0.265  Sum_probs=80.2

Q ss_pred             hhhhc-chhh--HHHHHHHHhhhcccc-cccccccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccE
Q 018603           10 AVQVN-ARET--DRTTQVNATISTVND-VHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQ   84 (353)
Q Consensus        10 ~~~~~-~~e~--~~~~~v~~li~~~~~-~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~   84 (353)
                      |+|++ +.+.  +..| +.+++.+.++ ........+|||+.||||||++++..|.|.+ .+.||+|.+.|++.|.|+|.
T Consensus       115 Aiyld~g~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~  193 (221)
T 2nug_A          115 AVYIDSGRDANFTREL-FYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY  193 (221)
T ss_dssp             HHHHHTTSCHHHHHHH-HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE
T ss_pred             HHHHhCCCCHHHHHHH-HHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE
Confidence            56666 3444  5555 4566666665 2222234689999999999999999999998 57899999999999999999


Q ss_pred             eeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           85 TYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        85 ~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                       ++.|. |.|||.||+.||+.||+.|..
T Consensus       194 -~~~G~-G~skK~Ae~~AA~~AL~~L~~  219 (221)
T 2nug_A          194 -RTLGE-GKSKKEAEQRAAEELIKLLEE  219 (221)
T ss_dssp             -EEEEE-ESSHHHHHHHHHHHHHHHHC-
T ss_pred             -EEEEe-cCCHHHHHHHHHHHHHHHhhc
Confidence             89998 599999999999999998863

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.46  E-value=6.6e-14  Score=112.64  Aligned_cols=70  Identities=29%  Similarity=0.294  Sum_probs=62.8

Q ss_pred             CCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603           41 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK  114 (353)
Q Consensus        41 ~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~  114 (353)
                      ..++|+.||||||+++  .|.|.+ .+.||+|.+.|++.|.|+|..+ .|. |.|||+|||.||+.||..|....
T Consensus        13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~-G~SKK~AEq~AA~~AL~~L~~~~   83 (91)
T 2l33_A           13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGA-GSNKKVAKAYAALAALEKLFPDT   83 (91)
T ss_dssp             CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHCCCC
T ss_pred             ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-Eee-eCCHHHHHHHHHHHHHHHHhhcC
Confidence            3578999999999998  689998 5789999999999999999887 787 59999999999999999998653

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.45  E-value=1.1e-13  Score=115.73  Aligned_cols=69  Identities=30%  Similarity=0.283  Sum_probs=62.2

Q ss_pred             cccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           38 RDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        38 ~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      ....+|||+.||||||+     |.|++ .+.||+|++.|++.|.|+|..+ .|. |.|||+|||.||+.||+.|...
T Consensus        33 ~~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~-G~SKK~AEq~AA~~AL~~L~~~  102 (114)
T 2ljh_A           33 IPQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQ-GRSKKVARIEAAATALRSFIQF  102 (114)
T ss_dssp             CCCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-Eee-eCCHHHHHHHHHHHHHHHHHcC
Confidence            34678999999999984     79998 5789999999999999999999 788 5999999999999999999764

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.45  E-value=1.3e-14  Score=136.18  Aligned_cols=101  Identities=29%  Similarity=0.310  Sum_probs=14.3

Q ss_pred             hhhhcc-hhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeee
Q 018603           10 AVQVNA-RETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYE   87 (353)
Q Consensus        10 ~~~~~~-~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~   87 (353)
                      |+|+++ .+.++. ++.+++.+.++........+|||+.||||||++++..|.|.+ ...||.|.+.|++.|+|+|+.++
T Consensus       145 Aiyld~G~~~~~~-~i~~~~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~  223 (248)
T 3n3w_A          145 AIHLEAGFEFAKT-IALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELA  223 (248)
T ss_dssp             HHHHHHCHHHHHH-HHHHHHHHHCC-------------------------------------------------------
T ss_pred             HHHHHCChHHHHH-HHHHHHHHHHHHhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEE
Confidence            667654 444444 456678887765444456799999999999999999999998 57899999999999999999999


Q ss_pred             cccccCCcchhHHHHHHHHHHHhhc
Q 018603           88 SHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        88 ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      .|. |.|||+||+.||+.||+.|..
T Consensus       224 ~G~-G~SKK~Aeq~AA~~AL~~L~~  247 (248)
T 3n3w_A          224 RAI-AGSKKEAQQMAAKIALEKLGA  247 (248)
T ss_dssp             -------------------------
T ss_pred             Eee-eCCHHHHHHHHHHHHHHHHHc
Confidence            998 599999999999999998853

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.42  E-value=2.1e-14  Score=133.67  Aligned_cols=102  Identities=25%  Similarity=0.300  Sum_probs=15.3

Q ss_pred             hhhhc-chhhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeec
Q 018603           10 AVQVN-ARETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYES   88 (353)
Q Consensus        10 ~~~~~-~~e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~a   88 (353)
                      |+|++ +.+.+..| +.+++.+.++........+|||+.||||||++++..|.|.+...||.|.+.|++.|+++|..++.
T Consensus       130 Aiyld~g~~~~~~~-i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~  208 (242)
T 2a11_A          130 AIYLQHGMEKAREV-ILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGS  208 (242)
T ss_dssp             HHHHHHCHHHHHHH-HHHHTHHHHHHTTC---------------------------------------------------
T ss_pred             HHHhcCCHHHHHHH-HHHHHHHHHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEE
Confidence            56666 44544544 55677776654443334689999999999999998899998669999999999999999998888


Q ss_pred             ccccCCcchhHHHHHHHHHHHhhcc
Q 018603           89 HQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        89 g~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      |. |.|||+||+.||+.||+.|...
T Consensus       209 G~-G~skk~Ae~~AA~~AL~~L~~~  232 (242)
T 2a11_A          209 GV-GRSKKEAEQKAAAAAWKALEVL  232 (242)
T ss_dssp             -------------------------
T ss_pred             ee-eCCHHHHHHHHHHHHHHHHhhc
Confidence            88 5999999999999999998754

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.39  E-value=5.6e-13  Score=101.88  Aligned_cols=66  Identities=26%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      ..+||++.|||||     ..|.|.+ ...||+|.+.|++.|.|+|..+ .|. |.|||+|+|.||+.||..|..
T Consensus         2 ~~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~-G~SKK~Aeq~AA~~al~~L~~   68 (71)
T 2b7v_A            2 SGKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGS-GRNKKLAKARAAQSALATVFN   68 (71)
T ss_dssp             CSSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEe-eCCHHHHHHHHHHHHHHHHHh
Confidence            3689999999994     4689997 5789999999999999999876 687 599999999999999998865

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=99.33  E-value=1.8e-14  Score=140.97  Aligned_cols=140  Identities=16%  Similarity=0.013  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcch---hHHHHHHHHHHHhhcccC---C--
Q 018603           45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKE---AEHEAAKVALMSLSLDKF---Q--  116 (353)
Q Consensus        45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~---Akq~AAk~AL~~L~~~~~---~--  116 (353)
                      ...|.+++.+.|+.  .|.....|+.....-...-.|.++.|++..||.+.+.   +...|.+++...+.+...   .  
T Consensus       170 ~~~La~iA~~lgL~--~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l~~~~l~~~~~~~  247 (341)
T 3rv0_A          170 NNNLFDWSTKLNFT--KRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQMV  247 (341)
T ss_dssp             HHHHHHHHHHTTTT--TTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHHHHCGGGC-
T ss_pred             HHHHHHHHHHcCcH--HHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence            46789999999976  3443212221110000012345678999999999987   676666666554443211   1  


Q ss_pred             --CCcchhHHHHHHHHHHHhcCCC-CceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          117 --QDDSVLYKNVLQELAQKEAYAL-PVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       117 --~d~~~n~ks~LqE~~qk~~~~~-P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                        .....|||+.||||||++++.. |.|++ .+.||     |++.|.|+|+.++.|.|.|||+|||.||+.||+.|...
T Consensus       248 ~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~  321 (341)
T 3rv0_A          248 IKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELL  321 (341)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             hccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhh
Confidence              1245899999999999998754 69997 45664     99999999999999999999999999999999999765

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.31  E-value=4.4e-12  Score=98.20  Aligned_cols=68  Identities=26%  Similarity=0.209  Sum_probs=57.5

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK  114 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~  114 (353)
                      ..+||++.|+|++     ..|.|.+ .+.||+|++.|++.|.|+|..+ .|. |.|||+|||.||+.||+.|....
T Consensus         5 ~~K~pl~~L~q~~-----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~-G~SKK~Aeq~AA~~al~~L~~~~   73 (75)
T 3p1x_A            5 HGKNPVMELNEKR-----RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGA-GSNKKVAKAYAALAALEKLFPDT   73 (75)
T ss_dssp             -CCCHHHHHHHHS-----TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCHHHHHHHcC-----CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEE-ECCHHHHHHHHHHHHHHHHHccC
Confidence            4677777777763     3689998 5799999999999999999988 787 59999999999999999997653

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.24  E-value=1.3e-11  Score=114.98  Aligned_cols=69  Identities=38%  Similarity=0.455  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          121 VLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       121 ~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      .+||+.|++|++.  +..|.|++ .+.||+|.++|+++|.|+|..+ .|.|+|||+|||+||+.||+.|....
T Consensus         4 ~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~~   73 (236)
T 2l3j_A            4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQFP   73 (236)
T ss_dssp             CCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHhcc
Confidence            4788888888865  46789997 6789999999999999999986 79999999999999999999998754

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=99.00  E-value=6.7e-11  Score=115.76  Aligned_cols=96  Identities=20%  Similarity=0.146  Sum_probs=16.5

Q ss_pred             hhhhc----chhhHHHHHHHHhhhcccc-cccc---cccCCCHHHHHHHHHHHcCCCC-Ceeeee-ecCCCCCccEEEEE
Q 018603           10 AVQVN----ARETDRTTQVNATISTVND-VHKS---RDMQHLYKNQLQSYTQKKNLPL-PMYSCE-REGPPHASRFKCKV   79 (353)
Q Consensus        10 ~~~~~----~~e~~~~~~v~~li~~~~~-~~~l---~~~~~npKS~LqE~~QK~gl~~-P~Y~l~-~~Gp~h~~~F~~~V   79 (353)
                      |+|++    |.+.++.|+. +++.+.++ +...   ....+|||+.||||||+.++.. |.|.+. +.||     |++.|
T Consensus       215 AIylD~~~~G~~~a~~fi~-~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v  288 (341)
T 3rv0_A          215 ALVIDRFGTEFLDIKEWLE-ELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEV  288 (341)
T ss_dssp             HHHHHHCSSTTHHHHHHHH-HHTHHHHHCGGGC-----------------------------------------------
T ss_pred             HHhhcCccCCHHHHHHHHH-HHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEE
Confidence            77887    5777777754 46666653 3322   2356899999999999998755 589874 5564     99999


Q ss_pred             EEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           80 TIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        80 ~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      +|+|..++.|. |.|||+|+|.||+.||+.|..
T Consensus       289 ~i~~~~~g~G~-G~SKK~AEq~AA~~AL~~L~~  320 (341)
T 3rv0_A          289 KIGDILLDEAE-GNSIREAEHRAAMKVLENDEL  320 (341)
T ss_dssp             ---------------------------------
T ss_pred             EECCEEEEEEE-eCCHHHHHHHHHHHHHHHhhh
Confidence            99999999998 599999999999999998865

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=98.94  E-value=9.3e-11  Score=110.20  Aligned_cols=107  Identities=18%  Similarity=0.053  Sum_probs=72.7

Q ss_pred             EEccEeeecccccCCcchhH--HHHHHHHHHHhhcccCCCCcchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEE
Q 018603           80 TIDGQTYESHQFFPTLKEAE--HEAAKVALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVST  157 (353)
Q Consensus        80 ~I~g~~~~ag~Gg~SKK~Ak--q~AAk~AL~~L~~~~~~~d~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~  157 (353)
                      .+.++.|++.+||.+.+.+.  ..+-+.+...|.+.... ....+||+.|+||+|.... .+.|.  ..++.|.+.|++.
T Consensus       155 ~~laD~~EAliGAiylD~G~~~~~~~~~i~~~~~~~i~~-~~~~~~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~  230 (265)
T 3c4b_A          155 KAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEK-FSANVPRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVT  230 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH-HHHHSCCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEE
T ss_pred             hHHHHHHHHHhhheeeecCCCHHHHHHHHHHHHHHHHHh-HhhcCCCCHHHHHHHhccC-Cceee--eccccCCCcEEEE
Confidence            45567888888899988776  44444444444332110 0113445555555554432 12232  3445789999999


Q ss_pred             EEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          158 VEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       158 V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      |.|+|+.++.|.|.|||+|||.||+.||+.|..
T Consensus       231 v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~  263 (265)
T 3c4b_A          231 VEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA  263 (265)
T ss_dssp             EEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999864

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=98.67  E-value=1.4e-08  Score=95.30  Aligned_cols=94  Identities=14%  Similarity=0.111  Sum_probs=67.7

Q ss_pred             hhhhcc-h--hhHHHHHHHHhhhcccccccccccCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEee
Q 018603           10 AVQVNA-R--ETDRTTQVNATISTVNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY   86 (353)
Q Consensus        10 ~~~~~~-~--e~~~~~~v~~li~~~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~   86 (353)
                      |+|+++ .  +.+..| +.+++.+.++.... ...++|+..|+|+|++.    +.|..  .++.|.+.|++.|.|+|+.+
T Consensus       167 AiylD~G~~~~~~~~~-i~~~~~~~i~~~~~-~~~k~~l~el~~~~~~~----~~~~~--~~~~~~~~f~v~v~v~~~~~  238 (265)
T 3c4b_A          167 AIYMDSGMSLEVVWQV-YYPMMQPLIEKFSA-NVPRSPVRELLEMEPET----AKFSP--AERTYDGKVRVTVEVVGKGK  238 (265)
T ss_dssp             HHHHHTTSCHHHHHHH-HHHHHHHHHHHHHH-HSCCCHHHHHHHHCTTT----EEECC--CEECTTSCEEEEEEETTTEE
T ss_pred             heeeecCCCHHHHHHH-HHHHHHHHHHhHhh-cCCCCHHHHHHHhccCC----ceeee--ccccCCCcEEEEEEEecceE
Confidence            777775 3  455555 56677776654332 33567777777776642    23332  34468899999999999989


Q ss_pred             ecccccCCcchhHHHHHHHHHHHhhc
Q 018603           87 ESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        87 ~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      +.|. |.|||+|||.||+.||+.|..
T Consensus       239 ~~G~-G~SkK~Aeq~AA~~AL~~l~~  263 (265)
T 3c4b_A          239 FKGV-GRSYRIAKSAAARRALRSLKA  263 (265)
T ss_dssp             EEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEe-eCCHHHHHHHHHHHHHHHHhh
Confidence            9998 599999999999999999864

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=95.49  E-value=0.031  Score=45.25  Aligned_cols=69  Identities=16%  Similarity=0.119  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHhcC-----CCCceEEeccCCCCCCeEEEEEEECC-----EEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          121 VLYKNVLQELAQKEAY-----ALPVYNTKQSGESHAPTFVSTVEVGG-----EVFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       121 ~n~ks~LqE~~qk~~~-----~~P~Y~~~~~Gp~H~~~F~~~V~I~G-----~~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      .+.++.|+.||++.-.     ..|.|.+..... ....| |+|.+-.     ...+.- -.+||.||+.||-+|++.|..
T Consensus         4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~-~~sk~~AK~sAAf~Ac~~L~~   80 (102)
T 2kou_A            4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSL-LPSTEAAKKDACLKAVHELHN   80 (102)
T ss_dssp             SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCc-cccHHHHHHHHHHHHHHHHHH
Confidence            4788999999998632     458898632211 12366 8887742     222323 499999999999999999987


Q ss_pred             CC
Q 018603          191 PN  192 (353)
Q Consensus       191 ~~  192 (353)
                      ..
T Consensus        81 ~G   82 (102)
T 2kou_A           81 LG   82 (102)
T ss_dssp             HC
T ss_pred             CC
Confidence            65

>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A

Probab=92.74  E-value=0.013  Score=62.78  Aligned_cols=110  Identities=12%  Similarity=-0.041  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcc-hhHHHHHHHHHHHhhcccCC---CCcc
Q 018603           45 KNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLK-EAEHEAAKVALMSLSLDKFQ---QDDS  120 (353)
Q Consensus        45 KS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK-~Akq~AAk~AL~~L~~~~~~---~d~~  120 (353)
                      ...|.+++++.|+.  .|.....|+.      .+-.+.++.|++..||.+.+ .+...|.+.+...+......   ....
T Consensus       375 n~~La~~A~~lgL~--~~l~~~~~e~------~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~  446 (756)
T 2qvw_A          375 NEALNYLVQTLGLP--QLAEFSNNLV------AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSAC  446 (756)
T ss_dssp             HHHHHHHHHHTTCT--TTCBCCSCC--------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CC
T ss_pred             chHHHHHHHHcChH--HHhccCCCCC------CcccHHHhHHHHHhCcccccccChHHHHHHHHHHHHhhhhcccccccc
Confidence            46799999999976  5665444442      12356678899999999999 88775555555555444321   2346


Q ss_pred             hhH-HHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHH---------HHHHHHHHHHhhC
Q 018603          121 VLY-KNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAE---------MSAAKVAYMRLKE  190 (353)
Q Consensus       121 ~n~-ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AK---------q~AA~~AL~~L~~  190 (353)
                      .|| |+.||||||+++                             .+.|.+.+.+.||         -.||+.||+.|..
T Consensus       447 ~Dp~Kt~LqE~~q~~~-----------------------------ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~  497 (756)
T 2qvw_A          447 PDAVTKASKRVCMGEA-----------------------------GAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRD  497 (756)
T ss_dssp             CHHHHHHHHHHHTSCC-----------------------------CHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHhccc-----------------------------hhhhhhhhhhHHhhhccccchhhHHHHHHHHhhcc
Confidence            789 999999998433                             3445566777777         5799999988876


Q ss_pred             C
Q 018603          191 P  191 (353)
Q Consensus       191 ~  191 (353)
                      .
T Consensus       498 ~  498 (756)
T 2qvw_A          498 I  498 (756)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=90.13  E-value=0.53  Score=37.86  Aligned_cols=72  Identities=17%  Similarity=0.255  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHHHHcCC-----CCCeeeeeecCCCCCccEEEEEEEccE----eeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           42 HLYKNQLQSYTQKKNL-----PLPMYSCEREGPPHASRFKCKVTIDGQ----TYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        42 ~npKS~LqE~~QK~gl-----~~P~Y~l~~~Gp~h~~~F~~~V~I~g~----~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      .+.++.|+.||+++--     ..|.|.+..... ....| |+|.+-..    .+.... ..+|+.||+.||-.|...|.+
T Consensus         4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~-~~sk~~AK~sAAf~Ac~~L~~   80 (102)
T 2kou_A            4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSL-LPSTEAAKKDACLKAVHELHN   80 (102)
T ss_dssp             SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCc-cccHHHHHHHHHHHHHHHHHH
Confidence            4668999999999842     247888532211 12346 88877431    122122 489999999999999999987


Q ss_pred             ccCC
Q 018603          113 DKFQ  116 (353)
Q Consensus       113 ~~~~  116 (353)
                      .+..
T Consensus        81 ~G~L   84 (102)
T 2kou_A           81 LGVL   84 (102)
T ss_dssp             HCSC
T ss_pred             CCCC
Confidence            7643

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=90.02  E-value=0.32  Score=52.86  Aligned_cols=69  Identities=23%  Similarity=0.244  Sum_probs=48.1

Q ss_pred             hhHHHHHHHHHHHhcCCCCceEEe------ccC------CCCCC-eEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHH
Q 018603          121 VLYKNVLQELAQKEAYALPVYNTK------QSG------ESHAP-TFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMR  187 (353)
Q Consensus       121 ~n~ks~LqE~~qk~~~~~P~Y~~~------~~G------p~H~~-~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~  187 (353)
                      ..||..+++   +.|-. +.|+++      +.|      |...| .|.|.+.+-+...-.+.-+-||+|+|.||+.||++
T Consensus        17 ~~pk~~~~q---~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~   92 (950)
T 3htx_A           17 PTPKAIIHQ---KFGAK-ASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDK   92 (950)
T ss_dssp             CCCHHHHHH---TTGGG-SEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHH---HhCcc-eeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHHH
Confidence            356766653   33333 578763      122      22233 88888888665555688899999999999999999


Q ss_pred             hhCCCC
Q 018603          188 LKEPNP  193 (353)
Q Consensus       188 L~~~~~  193 (353)
                      |+..+.
T Consensus        93 ~g~~~~   98 (950)
T 3htx_A           93 LGIRPQ   98 (950)
T ss_dssp             TTSTTT
T ss_pred             hCCCcc
Confidence            998654

>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.14  E-value=2.1  Score=35.17  Aligned_cols=71  Identities=18%  Similarity=0.024  Sum_probs=45.1

Q ss_pred             cchhHHHHHHHHHHHhcCC--CCceEE--eccCCCCCCeEEEEEEEC--CEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          119 DSVLYKNVLQELAQKEAYA--LPVYNT--KQSGESHAPTFVSTVEVG--GEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~--~P~Y~~--~~~Gp~H~~~F~~~V~I~--G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      +...||++|....|+--..  .-.|.+  ...|   .++=.|++.+.  ...-..+.|+.|-+|++.||-.|++.|+...
T Consensus        15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g---~k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~Lg   91 (119)
T 2db2_A           15 EFPQPKNLLNSVIGRALGISHAKDKLVYVHTNG---PKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWG   91 (119)
T ss_dssp             TCSCHHHHHHHHHHHHTTHHHHHHHEEEEECCS---SSSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             hCCChHHHHHHHHHHHHccCchhhheeEEeecC---CceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHcC
Confidence            3567999999887764221  112322  2233   23345666553  2222357899999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	353
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	5e-16
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	1e-14
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	3e-15
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	4e-14
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	2e-14
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	5e-11
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	3e-14
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	5e-12
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	1e-13
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	3e-13
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	5e-13
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	7e-12
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	4e-12
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	2e-09
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	9e-12
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	3e-11
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	1e-11
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	2e-11
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	4e-11
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	2e-08
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	6e-11
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	2e-10
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	2e-10
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	2e-10
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	4e-09
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	2e-08
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	4e-09
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	1e-07
d1t4oa_	81	d.50.1.1 (A:) RNase III, C-terminal domain {Baker'	4e-09
d1t4oa_	81	d.50.1.1 (A:) RNase III, C-terminal domain {Baker'	6e-08
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	4e-09
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	4e-07
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	5e-09
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	8e-09
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	4e-08
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	1e-06
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	3e-07
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	4e-05

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 69.5 bits (170), Expect = 5e-16
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 123 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
           YK  LQE+ Q E    P Y   +         FV  V V G+  +    ++KK+AE  AA
Sbjct: 2   YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAA 61

Query: 182 KVAYMRL 188
           ++AY +L
Sbjct: 62  RIAYEKL 68

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 66.1 bits (161), Expect = 1e-14
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 44  YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
           YK  LQ   Q ++   P Y     E       F  +V ++G+T  + +   T KEAE EA
Sbjct: 2   YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGK-GRTKKEAEKEA 60

Query: 103 AKVALMSL 110
           A++A   L
Sbjct: 61  ARIAYEKL 68

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.7 bits (165), Expect = 3e-15
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
           Y   + S+ QKK L +              RF CK  I    Y       T +EA+  AA
Sbjct: 1   YIGLVNSFAQKKKLSVNYE-QCEPNSELPQRFICKCKIGQTMY-GTGSGVTKQEAKQLAA 58

Query: 104 KVALMSLS 111
           K A   L 
Sbjct: 59  KEAYQKLL 66

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.6 bits (157), Expect = 4e-14
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
           Y  ++   AQK+  ++      +        F+   ++G  ++      +K++A+  AAK
Sbjct: 1   YIGLVNSFAQKKKLSVNYEQC-EPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAK 59

Query: 183 VAYMRLKEPNPSQ 195
            AY +L +  P  
Sbjct: 60  EAYQKLLKSPPKT 72

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (161), Expect = 2e-14
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 114 KFQQDDSVLYKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKS 172
           K     ++   N L  L   +      Y    QSG  HAP F  +V+V G  +   G  S
Sbjct: 2   KILDSKAIDLMNALMRL--NQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASG-PS 58

Query: 173 KKQAEMSAAKVAYMRLKEPNPSQG 196
           KK A++  A      +  P     
Sbjct: 59  KKTAKLHVAVKVLQAMGYPTGFDA 82

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 5e-11
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 44  YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
             N L    Q +  P   Y    + GP HA  F   V +DG TYE+    P+ K A+   
Sbjct: 11  LMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASG--PSKKTAKLHV 66

Query: 103 AKVALMSLSLDKFQQDD 119
           A   L ++        D
Sbjct: 67  AVKVLQAMGYPTGFDAD 83

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 64.6 bits (157), Expect = 3e-14
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 123 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
           YK +LQE+ QK     P Y      G  H   F+   ++      G+G KSKK+AE  AA
Sbjct: 2   YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEG-KSKKEAEQRAA 60

Query: 182 KVAYMRLK 189
           +     L+
Sbjct: 61  EELIKLLE 68

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 58.5 bits (141), Expect = 5e-12
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
           YK  LQ  TQK+    P Y      GP H  +F  +  I            + KEAE  A
Sbjct: 2   YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEG--KSKKEAEQRA 59

Query: 103 AKVALMSL 110
           A+  +  L
Sbjct: 60  AEELIKLL 67

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (158), Expect = 1e-13
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 36  KSRDMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTL 95
           ++   Q   K  L  + +++ LP P+Y   +        F   VT+  Q Y+S  +  + 
Sbjct: 20  RAYPPQITPKMCLLEWCRREKLPQPVYETVQRTIDRM--FCSVVTVAEQKYQSTLWDKSK 77

Query: 96  KEAEHEAAKVALMSLSL--DKFQQDDSVLYK 124
           K AE  AA V L S  L   +  ++   L K
Sbjct: 78  KLAEQTAAIVCLRSQGLPEGRLGEESPSLNK 108

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (155), Expect = 3e-13
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 105 VALMSLSLDKFQQDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEV 164
           +  M++  D+      +  K  L E  ++E    PVY T Q            V V  + 
Sbjct: 10  IIKMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCS--VVTVAEQK 67

Query: 165 F-SGQGAKSKKQAEMSAAKVAYMRLKEPNPSQGP 197
           + S    KSKK AE +AA V       P    G 
Sbjct: 68  YQSTLWDKSKKLAEQTAAIVCLRSQGLPEGRLGE 101

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 5e-13
 Identities = 21/75 (28%), Positives = 31/75 (41%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
           +   L    QK+   L       SG  H   F   V + G  F     +SKK+A+ +AAK
Sbjct: 15  FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAK 74

Query: 183 VAYMRLKEPNPSQGP 197
           +A   L +   +  P
Sbjct: 75  LAVEILNKEKKAVSP 89

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 7e-12
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
           +  +L +Y QK+ + L        GPPH  RF  +V IDG+ +   +   + KEA++ AA
Sbjct: 15  FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGR-SKKEAKNAAA 73

Query: 104 KVALMSL 110
           K+A+  L
Sbjct: 74  KLAVEIL 80

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.1 bits (143), Expect = 4e-12
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
              +L EL     Y        +SGESHA +FV +V V G+ F G G ++KK A+  AA+
Sbjct: 6   PVMILNELRPGLKYDF----LSESGESHAKSFVMSVVVDGQFFEGSG-RNKKLAKARAAQ 60

Query: 183 VAYMRLKE 190
            A   +  
Sbjct: 61  SALATVFN 68

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 8/68 (11%)

Query: 44  YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
               L             Y      G  HA  F   V +DGQ +         K A+  A
Sbjct: 6   PVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF--EGSGRNKKLAKARA 58

Query: 103 AKVALMSL 110
           A+ AL ++
Sbjct: 59  AQSALATV 66

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.5 bits (141), Expect = 9e-12
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
           Y ++L  Y Q   + +        GPPH  RF  +V ID + +   +   + +EA + AA
Sbjct: 9   YMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAK-GRSKQEARNAAA 67

Query: 104 KVALMSL 110
           K+A+  L
Sbjct: 68  KLAVDIL 74

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (137), Expect = 3e-11
 Identities = 20/76 (26%), Positives = 30/76 (39%)

Query: 117 QDDSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQA 176
            D    Y + L +  Q    A+       SG  H   F   V +  + F     +SK++A
Sbjct: 3   SDTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEA 62

Query: 177 EMSAAKVAYMRLKEPN 192
             +AAK+A   L   N
Sbjct: 63  RNAAAKLAVDILDNEN 78

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (140), Expect = 1e-11
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 44  YKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
               L  Y Q+     P+Y+  E E P     F   VTIDG TY S     + K A+++A
Sbjct: 11  EVCILHEYMQRVLKVRPVYNFFECENPSE--PFGASVTIDGVTYGSGTAS-SKKLAKNKA 67

Query: 103 AKVALMSLSLDKFQQDDS 120
           A+  L  L +  F +  S
Sbjct: 68  ARATLEIL-IPDFVKQTS 84

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
              +L E  Q+     PVYN  +  E+ +  F ++V + G  +    A SKK A+  AA+
Sbjct: 11  EVCILHEYMQRVLKVRPVYNFFEC-ENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAAR 69

Query: 183 VAYMRL 188
                L
Sbjct: 70  ATLEIL 75

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.2 bits (135), Expect = 4e-11
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
             +Q+     K+N+ +       EGP H   F     +     E        K ++  AA
Sbjct: 9   PISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGE--GNGKKVSKKRAA 66

Query: 104 KVALMSL 110
           +  L+ L
Sbjct: 67  EKMLVEL 73

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.5 bits (115), Expect = 2e-08
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
             + + E+  K    +     ++ G +H   F++   VG  V  G+G   KK ++  AA+
Sbjct: 9   PISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEG-NGKKVSKKRAAE 67

Query: 183 VAYMRLKE 190
              + L++
Sbjct: 68  KMLVELQK 75

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.7 bits (134), Expect = 6e-11
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 45  KNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
           KN L    + K  P   Y    + GP HA  F   V ++GQ +E     PT K+A+  AA
Sbjct: 7   KNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSG--PTKKKAKLHAA 62

Query: 104 KVALMSL 110
           + AL S 
Sbjct: 63  EKALRSF 69

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 124 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
           KN L +L   E      Y    Q+G  HAP FV +VEV G+VF G G  +KK+A++ AA+
Sbjct: 7   KNALMQL--NEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSG-PTKKKAKLHAAE 63

Query: 183 VAYMRLKE 190
            A     +
Sbjct: 64  KALRSFVQ 71

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 54.0 bits (129), Expect = 2e-10
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 124 KNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
              LQELA ++ + LP Y   ++SG  H   F  T  V   V +G G  SK+ A+  AA+
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSG-TSKQVAKRVAAE 61

Query: 183 VAYMRLK 189
               + K
Sbjct: 62  KLLTKFK 68

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 54.0 bits (129), Expect = 2e-10
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 45  KNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
              LQ    +K   LP Y+  +  GPPH   F     ++           + + A+  AA
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGS--GTSKQVAKRVAA 60

Query: 104 KVALMSL 110
           +  L   
Sbjct: 61  EKLLTKF 67

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (123), Expect = 4e-09
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV-----GGEVFSGQGAKSKKQAE 177
            K  L +  QKE      Y   Q G  H  +F++ + +     G  +F+ +   +KK A 
Sbjct: 28  AKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAA 86

Query: 178 MSAAKVAYMRLK--------EPNPSQG 196
            S A     +L            PS G
Sbjct: 87  QSCALSLVRQLYHLGVIEAYSSGPSSG 113

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTID----GQTYESHQFFPTLKEAE 99
            K +L  Y QK+ +    Y   + GP H   F  ++TI     G+   + +     K A 
Sbjct: 28  AKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAA 86

Query: 100 HEAAKVALMSL 110
              A   +  L
Sbjct: 87  QSCALSLVRQL 97

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (122), Expect = 4e-09
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
            KN L ++  K+ +  P Y     G  +  +F C+V ++G  Y         K+A+  AA
Sbjct: 8   IKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 104 KVALMSL 110
           +  +  L
Sbjct: 67  RDFVNYL 73

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQG-AKSKKQAEMSAA 181
            KN L     K     P Y  +  G  +   F+  V V G  ++G G + +KK A+ +AA
Sbjct: 8   IKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAA 66

Query: 182 KVAYMRLKEPNPSQGPALVSPDIQAQADYSSS 213
           +     L   N  +   + +  I       SS
Sbjct: 67  RDFVNYLVRINEVKSEEVPAVGIVPPPSGPSS 98

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (121), Expect = 4e-09
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
            K QL S     +L    Y   ++          +  +   T         +K A   AA
Sbjct: 8   AKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 66

Query: 104 KVALMSLS-LDKFQQ 117
           + AL     LD + +
Sbjct: 67  ENALRDKKMLDFYAK 81

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (112), Expect = 6e-08
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGES-HAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
            K  L  L    +     Y T +   +    + V      G V      ++ K A + AA
Sbjct: 8   AKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 66

Query: 182 KVAYMRLK 189
           + A    K
Sbjct: 67  ENALRDKK 74

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 4e-09
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCERE-GPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEA 102
               LQ    +K   LP Y+  +E GP H   F     ++           + K A+  A
Sbjct: 11  PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIE--IGSGTSKKLAKRNA 68

Query: 103 AKVALMSL 110
           A   L+ +
Sbjct: 69  AAKMLLRV 76

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 4e-07
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 123 YKNVLQELAQKEAYALPVYN-TKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAA 181
               LQEL  ++ + LP Y  T++SG +H   F  T  V   +  G G  SKK A+ +AA
Sbjct: 11  PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG-TSKKLAKRNAA 69

Query: 182 KVAYMRL 188
               +R+
Sbjct: 70  AKMLLRV 76

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 5e-09
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
           Y  ++  +AQK+   +  Y    SG      F    ++G + +S     +K++A+  AAK
Sbjct: 16  YIGLINRIAQKKRLTVN-YEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAK 74

Query: 183 VAYMRLKEPNPSQG 196
           +AY+++       G
Sbjct: 75  LAYLQILSEETGSG 88

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 8e-09
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
           Y   +    QKK L +    C   G      F  K  +  + Y         +EA+  AA
Sbjct: 16  YIGLINRIAQKKRLTVNYEQC-ASGVHGPEGFHYKCKMGQKEYSIGTGSTK-QEAKQLAA 73

Query: 104 KVALMSLSLDK 114
           K+A + +  ++
Sbjct: 74  KLAYLQILSEE 84

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 4e-08
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 44  YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
               L  Y  K            +   H   F  +VT+   T        + K A+H AA
Sbjct: 4   PIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGT--SKKLAKHRAA 61

Query: 104 KVALMSL 110
           + A+  L
Sbjct: 62  EAAINIL 68

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 1e-06
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
              VL E   K          +   + H PTF   V VG    +G+G  SKK A+  AA+
Sbjct: 4   PIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEG-TSKKLAKHRAAE 62

Query: 183 VAYMRLKE 190
            A   LK 
Sbjct: 63  AAINILKA 70

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (108), Expect = 3e-07
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 45  KNQLQSYTQKKNLPLPMY-SCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAA 103
            ++L    Q +    P Y      G P    F  +V +  +           K A+  AA
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGP--NKKIAKKNAA 66

Query: 104 KVALMSLSLDK 114
           +  L+ L    
Sbjct: 67  EAMLLQLGYKA 77

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (91), Expect = 4e-05
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 124 KNVLQELAQKEAYALPVY-NTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAK 182
            + L ++ Q      P Y    + G      FV  V+VG EV +G G  +KK A+ +AA+
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTG-PNKKIAKKNAAE 67

Query: 183 VAYMRLKEPNPS 194
              ++L     +
Sbjct: 68  AMLLQLGYKAST 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	353
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.8
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.77
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.77
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.77
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.77
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.76
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.75
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.75
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.74
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.72
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.71
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.7
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.7
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.67
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.64
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.62
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.6
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.6
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.6
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.59
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.59
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.59
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.58
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.57
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.56
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.56
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.54
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.54
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.53
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.51
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.5
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.49
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.38
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.34
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.18
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.18

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=5.1e-20  Score=138.51  Aligned_cols=67  Identities=34%  Similarity=0.489  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHh
Q 018603          122 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL  188 (353)
Q Consensus       122 n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L  188 (353)
                      |||+.||||||++++.+|.|++ ...||+|.+.|++.|.|+|+.++.|.|+|||+|||.||+.||+.|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~g~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            7999999999999999999997 678999999999999999999999999999999999999999987

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=3.3e-19  Score=137.13  Aligned_cols=72  Identities=22%  Similarity=0.419  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCCCC
Q 018603          123 YKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPSQ  195 (353)
Q Consensus       123 ~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~~~  195 (353)
                      ||++||||||++++++ .|++.+.||+|.+.|+|.|.|+|+.|+.|.|+|||+|||+||+.||+.|....+..
T Consensus         1 Y~s~L~E~~Qk~~~~~-~~~~~~~G~~h~~~F~~~v~v~~~~~~~g~G~sKK~Aeq~AA~~Al~~L~~~~~~~   72 (76)
T d1x48a1           1 YIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKT   72 (76)
T ss_dssp             HHHHHHHHHHHTTCCE-EEEECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             ChHHHHHHHHHhCCCC-ccccCCcCCCCCCcEEEEEEECCEEeCCcCccHHHHHHHHHHHHHHHHHHccCCCC
Confidence            7999999999999875 78887889999999999999999999999999999999999999999999876543

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.6e-19  Score=134.95  Aligned_cols=70  Identities=33%  Similarity=0.349  Sum_probs=64.4

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEP  191 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~  191 (353)
                      .+||++.||||||++++ .|.|++ .+.||+|++.|++.|.|++. ++.|.|+|||+|||.||+.||+.|+..
T Consensus         1 gK~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~al~~L~~~   71 (73)
T d2dixa1           1 GKTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAAEAAINILKAN   71 (73)
T ss_dssp             CCCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEeccccHHHHHHHHHHHHHHHHHhc
Confidence            36999999999999988 799997 68899999999999999997 568999999999999999999999865

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.77  E-value=4.9e-19  Score=133.47  Aligned_cols=66  Identities=32%  Similarity=0.364  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhh
Q 018603          123 YKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK  189 (353)
Q Consensus       123 ~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~  189 (353)
                      ||+.||||||++++++|.|++ .+.|++|.+.|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|+
T Consensus         2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~g~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_           2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-TGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEEE-ecCcCcHHHHHHHHHHHHHHHhc
Confidence            899999999999999999997 6789999999999999999876 78999999999999999999986

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.77  E-value=4.2e-19  Score=133.32  Aligned_cols=67  Identities=31%  Similarity=0.348  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhh
Q 018603          122 LYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLK  189 (353)
Q Consensus       122 n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~  189 (353)
                      |||+.||||||++++.+|.|++ ...||+|++.|+|.|.|+|.. +.|.|+|||.|||.||+.||+.|+
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~g~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLGEGKSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCEE-EEEecCCHHHHHHHHHHHHHHHhC
Confidence            7999999999999999999996 788999999999999999975 678999999999999999999884

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=6.2e-19  Score=138.22  Aligned_cols=76  Identities=28%  Similarity=0.344  Sum_probs=69.8

Q ss_pred             CCcchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCC
Q 018603          117 QDDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP  193 (353)
Q Consensus       117 ~d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~  193 (353)
                      .|+..|||++||||||++++. |.|++ .+.||+|.+.|+|.|.|+|..++.|.|+|||+|||.||+.||+.|.....
T Consensus         3 ~~~~~~yk~~L~E~~Qk~~~~-~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~g~sKK~Aeq~AA~~aL~~L~~~~~   79 (85)
T d1x49a1           3 SDTPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK   79 (85)
T ss_dssp             CCCTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCchhHHHHHHHHHHhcCCC-CeEEEEEecCCCCCceEEEEEecCceEeeccccccHHHHHHHHHHHHHHHHHHcCc
Confidence            356789999999999999995 78986 68899999999999999999999999999999999999999999988754

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-18  Score=132.28  Aligned_cols=70  Identities=29%  Similarity=0.360  Sum_probs=64.8

Q ss_pred             CcchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHh
Q 018603          118 DDSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRL  188 (353)
Q Consensus       118 d~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L  188 (353)
                      ....|||+.||||||++++.+|.|++ .+.|++|.+.|+|.|.+++.. +.|.|+|||+|||.||+.||+.|
T Consensus         6 ~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1           6 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIGSGTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEeccee-eccccccHHHHHHHHHHHHHHhC
Confidence            34689999999999999999999997 679999999999999999875 78999999999999999999986

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.2e-19  Score=139.67  Aligned_cols=74  Identities=27%  Similarity=0.364  Sum_probs=68.4

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCCC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNPS  194 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~~  194 (353)
                      ..+||++||||||++++ .|.|.+ ...||+|.+.|+|.|.|+|..++.|.|+|||+||+.||+.||+.|......
T Consensus        12 ~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Aeq~AA~~aL~~L~~~~~~   86 (90)
T d1qu6a1          12 AGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKA   86 (90)
T ss_dssp             SCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSC
T ss_pred             CCCHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeeccCCCcHHHHHHHHHHHHHHHHHhhCCC
Confidence            45999999999999988 588986 789999999999999999999999999999999999999999999987654

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=2.5e-18  Score=135.91  Aligned_cols=72  Identities=26%  Similarity=0.242  Sum_probs=66.8

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      ..|||+.||||||+++|.+|.|++ .+.|++|.+.|+|.|.|+|..+ .|.|+|||+||+.||+.||+.|....
T Consensus         5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~g~g~SKK~Ae~~AA~~aL~~l~~~~   77 (89)
T d1uhza_           5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA-TGTGPNKKIAKKNAAEAMLLQLGYKA   77 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTSSH
T ss_pred             CCCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeec-cccchHHHHHHHHHHHHHHHHhCccC
Confidence            469999999999999999999997 6789999999999999999986 78999999999999999999997653

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2e-18  Score=136.42  Aligned_cols=74  Identities=23%  Similarity=0.312  Sum_probs=68.7

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPNP  193 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~~  193 (353)
                      ...|||++||||||++++. |.|++.+.|++|.+.|+|.|.|+|+.|+.|.|+|||+|||.||+.||..|..+..
T Consensus        12 ~~~n~~s~L~E~~Qk~~~~-~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~Al~~L~~~~~   85 (89)
T d1qu6a2          12 SMGNYIGLINRIAQKKRLT-VNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEET   85 (89)
T ss_dssp             CCCCCHHHHHHHHHHSCCE-EEEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cccCHHHHHHHHHHhcCCC-cceeeeccCCCCCCceEEEEEECCccccccccchHHHHHHHHHHHHHHHHHccCC
Confidence            4679999999999999996 5799888999999999999999999999999999999999999999999998753

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=3.5e-18  Score=137.71  Aligned_cols=72  Identities=26%  Similarity=0.299  Sum_probs=65.7

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEe-eecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVF-SGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~-~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      ..|||+.||||||++++. |.|++.+.|++|.++|+|+|.|+|..| +.|.|.|||+|||.||+.||+.|....
T Consensus         5 ~~~~Ks~LqE~~qk~k~~-P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~~   77 (99)
T d1whqa_           5 SSGIKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN   77 (99)
T ss_dssp             CCSSHHHHHHHHHHTTCC-CEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHhCCCC-CeEEEecccCCCCceEEEEEEeccccceeccCCccHHHHHHHHHHHHHHHHHHcC
Confidence            468999999999999985 999998889999999999999999776 779999999999999999999997643

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.4e-17  Score=128.94  Aligned_cols=73  Identities=25%  Similarity=0.229  Sum_probs=64.8

Q ss_pred             CcchhHHHHHHHHHHHhcCCCCceEEe-ccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          118 DDSVLYKNVLQELAQKEAYALPVYNTK-QSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       118 d~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      ...+|||+.||||||++++..|.|.+. ..|  |...|+|.|.|+|..++.|.|+|||.|||.||+.||+.|....
T Consensus         6 ~~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g--~~~~F~~~v~i~g~~~~~g~G~sKK~Aeq~AA~~AL~~L~~~~   79 (85)
T d1x47a1           6 PNGKSEVCILHEYMQRVLKVRPVYNFFECEN--PSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDF   79 (85)
T ss_dssp             TTCCCHHHHHHHHHHHHTCSCCEEEEEECSS--SSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSS
T ss_pred             CCCcCHHHHHHHHHHHhCCCCCCeEEEecCC--CCCCEEEEEEECCEEEecCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999984 444  4557999999999999999999999999999999999997553

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=3.4e-18  Score=131.22  Aligned_cols=70  Identities=19%  Similarity=0.296  Sum_probs=64.3

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      +.+||++.||||||+++++ |.|++ .+.||+|++.|+|.|.|+|. ++.|.|.|||+|||.||+.||+.|..
T Consensus         5 ~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_           5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSI-VTEGEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTE-EEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeee-EeeeccCcHHHHHHHHHHHHHHHHHc
Confidence            5689999999999999997 88996 68899999999999999886 46799999999999999999999975

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.3e-17  Score=135.84  Aligned_cols=72  Identities=25%  Similarity=0.287  Sum_probs=65.6

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEE-----CCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV-----GGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I-----~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      ..|||++||||||++++. |.|++.+.||+|.+.|+|+|.|     ++..++.|.|+|||+|||.||+.||+.|....
T Consensus        25 ~~n~Ks~LqE~~Qk~k~~-p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~~g  101 (113)
T d1uila_          25 LENAKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLG  101 (113)
T ss_dssp             HHHHHHHHHHHHHHSCCC-CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHhCCCC-CceEEeeeccCCCCeEEEEEEEeeeccCCeEEeecccchHHHHHHHHHHHHHHHHHHcC
Confidence            469999999999999885 8999988899999999999999     56777889999999999999999999997654

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=5.5e-17  Score=121.67  Aligned_cols=68  Identities=32%  Similarity=0.345  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhh
Q 018603           43 LYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLS  111 (353)
Q Consensus        43 npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~  111 (353)
                      |||+.||||||++++.+|.|.+ ...|++|.+.|++.|.|+|..++.|. |.|||+|++.||+.||+.|.
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~-g~sKK~Aeq~AA~~aL~~L~   69 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGK-GRTKKEAEKEAARIAYEKLL   69 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEEE-eCCHHHHHHHHHHHHHHHhC
Confidence            7999999999999999999997 57899999999999999999999888 59999999999999999873

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.9e-16  Score=119.19  Aligned_cols=70  Identities=24%  Similarity=0.332  Sum_probs=63.2

Q ss_pred             CCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           41 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        41 ~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      ++||++.||||||++++ .|.|.+ ..+||+|++.|++.|.|++. +..|. |.|||+|++.||+.||..|...
T Consensus         1 gK~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g~-g~sKK~Aeq~AA~~al~~L~~~   71 (73)
T d2dixa1           1 GKTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCTGE-GTSKKLAKHRAAEAAINILKAN   71 (73)
T ss_dssp             CCCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEEEC-SSCTTHHHHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEec-cccHHHHHHHHHHHHHHHHHhc
Confidence            48999999999999998 699987 58899999999999999986 66787 5999999999999999999754

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1e-15  Score=128.38  Aligned_cols=70  Identities=31%  Similarity=0.279  Sum_probs=63.3

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEECCEEeeeccc-CCHHHHHHHHHHHHHHHhhC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEVGGEVFSGQGA-KSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I~G~~~~~G~G-~SKK~AKq~AA~~AL~~L~~  190 (353)
                      ...|||++||||||++++.+|.|++...+  |+++|++.|.|+|+.|+.+.| +|||+|||+||+.||+.|..
T Consensus        24 ~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~~--~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~   94 (128)
T d1whna_          24 PQITPKMCLLEWCRREKLPQPVYETVQRT--IDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL   94 (128)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCCCCEEECS--SSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHhcCCCCCeEEEeecc--cCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCC
Confidence            56899999999999999999999986543  778999999999999987655 89999999999999999964

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.1e-15  Score=116.75  Aligned_cols=70  Identities=23%  Similarity=0.293  Sum_probs=63.6

Q ss_pred             ccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHh
Q 018603           39 DMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSL  110 (353)
Q Consensus        39 ~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L  110 (353)
                      ....|||+.||||||++++.+|.|.+ ...|+.|.+.|.+.|.+++.. +.|. |.|||.|++.||+.||..|
T Consensus         6 ~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~-G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1           6 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIGS-GTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEEE-ESSHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEeccee-eccc-cccHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999997 578999999999999998864 6787 5999999999999999876

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.60  E-value=6.8e-16  Score=115.97  Aligned_cols=67  Identities=22%  Similarity=0.337  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhh
Q 018603           43 LYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLS  111 (353)
Q Consensus        43 npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~  111 (353)
                      .||+.||||||++++++|.|.+ ...|++|.+.|++.|.|++..+ .|. |.|||+|++.||+.||+.|.
T Consensus         1 ~Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~-g~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_           1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-TGS-GTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEEE-ecC-cCcHHHHHHHHHHHHHHHhc
Confidence            3899999999999999999998 5779999999999999999765 677 59999999999999999885

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.60  E-value=5.7e-16  Score=115.94  Aligned_cols=67  Identities=33%  Similarity=0.350  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhh
Q 018603           43 LYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLS  111 (353)
Q Consensus        43 npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~  111 (353)
                      |||+.||||||++++.+|.|.+ ...|+.|++.|++.|.|++.. +.|. |.|||.|++.||+.||+.|.
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~-g~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLGE-GKSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEE-ESSHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCEE-EEEe-cCCHHHHHHHHHHHHHHHhC
Confidence            7999999999999999999997 688999999999999999965 5677 59999999999999999874

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.9e-16  Score=121.53  Aligned_cols=80  Identities=29%  Similarity=0.466  Sum_probs=68.9

Q ss_pred             ccccccccccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHH
Q 018603           31 VNDVHKSRDMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMS  109 (353)
Q Consensus        31 ~~~~~~l~~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~  109 (353)
                      ++++..- ....+||+.||||||++++ .|.|.+ ...||+|.+.|+|.|.|+|..++.|. |.+||+||+.||+.||+.
T Consensus         3 ~~~~~~~-~~~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~-G~sKK~Aeq~AA~~aL~~   79 (90)
T d1qu6a1           3 HMEMAGD-LSAGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEGE-GRSKKEAKNAAAKLAVEI   79 (90)
T ss_dssp             CCSSCCC-SSSCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCEEE-CCSSHHHHHHHHHHHHHH
T ss_pred             hhhhccC-CCCCCHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeeccC-CCcHHHHHHHHHHHHHHH
Confidence            3444443 3567999999999999988 578876 68899999999999999999998888 599999999999999999


Q ss_pred             hhcc
Q 018603          110 LSLD  113 (353)
Q Consensus       110 L~~~  113 (353)
                      |...
T Consensus        80 L~~~   83 (90)
T d1qu6a1          80 LNKE   83 (90)
T ss_dssp             HHSC
T ss_pred             HHhh
Confidence            9865

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=6.2e-16  Score=117.08  Aligned_cols=65  Identities=34%  Similarity=0.389  Sum_probs=59.5

Q ss_pred             chhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          120 SVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       120 ~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      .+||++.|||||+     .+.|++ .+.||+|.+.|+|.|.|+|..| .|.|.|||+|||+||+.||+.|.+
T Consensus         3 ~Knpv~~L~E~~~-----~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Ak~~AA~~aL~~L~~   68 (71)
T d2b7va1           3 GKNPVMILNELRP-----GLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN   68 (71)
T ss_dssp             SSCHHHHHHHHCC-----SCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHcc-----CCeEEEeeeeCCCCCCeEEEEEEECCEEE-EecCCCHHHHHHHHHHHHHHHHHc
Confidence            5799999999986     357997 6889999999999999999998 789999999999999999999864

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=7.6e-16  Score=120.33  Aligned_cols=74  Identities=30%  Similarity=0.481  Sum_probs=67.2

Q ss_pred             ccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603           39 DMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK  114 (353)
Q Consensus        39 ~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~  114 (353)
                      +.+.+||+.||||||++++. |.|.+ ...||+|.+.|++.|.|+|..++.|. |.+||+||+.||+.||..|....
T Consensus         4 ~~~~~yk~~L~E~~Qk~~~~-~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~-g~sKK~Aeq~AA~~aL~~L~~~~   78 (85)
T d1x49a1           4 DTPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAK-GRSKQEARNAAAKLAVDILDNEN   78 (85)
T ss_dssp             CCTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEE-ESSHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCchhHHHHHHHHHHhcCCC-CeEEEEEecCCCCCceEEEEEecCceEeeccc-cccHHHHHHHHHHHHHHHHHHcC
Confidence            46789999999999999995 78876 58899999999999999999998888 59999999999999999998753

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.3e-15  Score=116.78  Aligned_cols=68  Identities=31%  Similarity=0.358  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           44 YKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        44 pKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      |++.||||||++++++ .|.+.+.||+|.+.|++.|.|+|..|+.|. |.+||+|+|+||+.||+.|...
T Consensus         1 Y~s~L~E~~Qk~~~~~-~~~~~~~G~~h~~~F~~~v~v~~~~~~~g~-G~sKK~Aeq~AA~~Al~~L~~~   68 (76)
T d1x48a1           1 YIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQTMYGTGS-GVTKQEAKQLAAKEAYQKLLKS   68 (76)
T ss_dssp             HHHHHHHHHHHTTCCE-EEEECCCSSSSSCCEEEEEEESSCEEEEEE-ESSHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHhCCCC-ccccCCcCCCCCCcEEEEEEECCEEeCCcC-ccHHHHHHHHHHHHHHHHHHcc
Confidence            7999999999999875 667667899999999999999999999998 5999999999999999999865

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=2.4e-15  Score=118.51  Aligned_cols=71  Identities=21%  Similarity=0.256  Sum_probs=64.8

Q ss_pred             CCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           41 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        41 ~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      ..||++.||||||++++.+|.|++ ...|++|.+.|++.|.|++..+ .|. |.+||+||+.||+.||+.|...
T Consensus         5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~g~-g~SKK~Ae~~AA~~aL~~l~~~   76 (89)
T d1uhza_           5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA-TGT-GPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeec-ccc-chHHHHHHHHHHHHHHHHhCcc
Confidence            479999999999999999999997 5789999999999999999876 577 5999999999999999998653

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=2.3e-15  Score=115.11  Aligned_cols=71  Identities=18%  Similarity=0.215  Sum_probs=63.1

Q ss_pred             ccCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           39 DMQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        39 ~~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      ...+||++.||||||+++++ |.|.+ ...||+|++.|++.|.|++. +..|. |.|||.|++.||+.||..|..
T Consensus         4 ~~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~-G~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_           4 GDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSI-VTEGE-GNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTE-EEEEC-CCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeee-Eeeec-cCcHHHHHHHHHHHHHHHHHc
Confidence            35699999999999999997 78886 67899999999999999885 56777 599999999999999999864

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.4e-15  Score=122.31  Aligned_cols=72  Identities=24%  Similarity=0.354  Sum_probs=64.7

Q ss_pred             CCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEee-ecccccCCcchhHHHHHHHHHHHhhccc
Q 018603           41 QHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTY-ESHQFFPTLKEAEHEAAKVALMSLSLDK  114 (353)
Q Consensus        41 ~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~-~ag~Gg~SKK~Akq~AAk~AL~~L~~~~  114 (353)
                      ..|||+.||||||++++. |.|.+.+.|+.|.+.|++.|.|+|..| +.|. |.+||+|||.||+.||+.|....
T Consensus         5 ~~~~Ks~LqE~~qk~k~~-P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~-g~sKK~AEq~AA~~al~~L~~~~   77 (99)
T d1whqa_           5 SSGIKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGN-STNKKDAQSNAARDFVNYLVRIN   77 (99)
T ss_dssp             CCSSHHHHHHHHHHTTCC-CEEEEEEEECSSSEEEEEEEECTTCSCCEEEE-ESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHhCCCC-CeEEEecccCCCCceEEEEEEeccccceeccC-CccHHHHHHHHHHHHHHHHHHcC
Confidence            579999999999999985 999998889999999999999998765 5677 69999999999999999997653

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6e-15  Score=115.09  Aligned_cols=72  Identities=29%  Similarity=0.267  Sum_probs=63.3

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      .++|||+.||||||+.++.+|.|.+.. ++.|...|.+.|.|+|..++.|. |.+||.|++.||+.||+.|...
T Consensus         7 ~~K~p~s~LqE~~Qk~~~~~p~Y~~~~-~~g~~~~F~~~v~i~g~~~~~g~-G~sKK~Aeq~AA~~AL~~L~~~   78 (85)
T d1x47a1           7 NGKSEVCILHEYMQRVLKVRPVYNFFE-CENPSEPFGASVTIDGVTYGSGT-ASSKKLAKNKAARATLEILIPD   78 (85)
T ss_dssp             TCCCHHHHHHHHHHHHTCSCCEEEEEE-CSSSSCCEEEEEEETTEEEEEEE-ESSHHHHHHHHHHHHHHHHCSS
T ss_pred             CCcCHHHHHHHHHHHhCCCCCCeEEEe-cCCCCCCEEEEEEECCEEEecCC-cchHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999843 23345569999999999999998 5999999999999999999765

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.7e-15  Score=118.09  Aligned_cols=72  Identities=24%  Similarity=0.242  Sum_probs=66.3

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      ...|||+.||||||++++. |.|.+.+.|+.|.+.|.+.|.|+|..|+.|. |.+||+||+.||+.||..|...
T Consensus        12 ~~~n~~s~L~E~~Qk~~~~-~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g~-G~sKK~Akq~AA~~Al~~L~~~   83 (89)
T d1qu6a2          12 SMGNYIGLINRIAQKKRLT-VNYEQCASGVHGPEGFHYKCKMGQKEYSIGT-GSTKQEAKQLAAKLAYLQILSE   83 (89)
T ss_dssp             CCCCCHHHHHHHHHHSCCE-EEEEEEEECSSSSSEEEEEEEEETTBCCEEE-ESSHHHHHHHHHHHHHHHHHHC
T ss_pred             cccCHHHHHHHHHHhcCCC-cceeeeccCCCCCCceEEEEEECCccccccc-cchHHHHHHHHHHHHHHHHHcc
Confidence            5689999999999999986 5788888899999999999999999999998 5999999999999999999865

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=3.3e-15  Score=115.65  Aligned_cols=70  Identities=21%  Similarity=0.142  Sum_probs=60.4

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEEeccCCCCCCeEEEEEEE-CCEEeeecccCCHHHHHHHHHHHHHHHhh
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNTKQSGESHAPTFVSTVEV-GGEVFSGQGAKSKKQAEMSAAKVAYMRLK  189 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~H~~~F~~~V~I-~G~~~~~G~G~SKK~AKq~AA~~AL~~L~  189 (353)
                      ...|+|+.||||||+.++. |.|++.+.|++|.+.|++.|.| +|..++.|.|.|||+|+|.||+.||+.+.
T Consensus         4 id~~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~   74 (81)
T d1t4oa_           4 LDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK   74 (81)
T ss_dssp             CCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred             cccCHHHHHHHHHhcCCCC-cEEEEeccCCCCCCCEEEEEEEecCceEEecccchhhHHHHHHHHHHHHhcc
Confidence            4679999999999999986 9999866666666778888877 56777889999999999999999999775

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2e-14  Score=111.99  Aligned_cols=68  Identities=28%  Similarity=0.364  Sum_probs=60.8

Q ss_pred             cchhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhCCC
Q 018603          119 DSVLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKEPN  192 (353)
Q Consensus       119 ~~~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~~~  192 (353)
                      +..||+++|+|+.     +.|.|++ .+.||+|.+.|++.|.|+|..| .|.|+|||+|||+||+.||+.|+...
T Consensus        10 ~~~n~~~~L~e~~-----~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g~G~SKK~Aeq~AA~~aL~~L~~~~   78 (84)
T d2dmya1          10 DLMNALMRLNQIR-----PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYPT   78 (84)
T ss_dssp             SCTHHHHHHHHHS-----CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCCC
T ss_pred             cccCHHHHHHHhC-----CCCeEEEEEeeCCCCCCeEEEEEEECCEEE-EcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence            4689999999973     4679997 7889999999999999999988 58999999999999999999997654

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.8e-14  Score=120.77  Aligned_cols=71  Identities=30%  Similarity=0.306  Sum_probs=64.5

Q ss_pred             ccCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhh
Q 018603           39 DMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLS  111 (353)
Q Consensus        39 ~~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~  111 (353)
                      ...++||+.||||||++++.+|.|.+...  .|+++|++.|.|+|..|..+.|+.+||+|||+||+.||+.|.
T Consensus        23 p~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~--~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg   93 (128)
T d1whna_          23 PPQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQG   93 (128)
T ss_dssp             CTTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHhcCCCCCeEEEeec--ccCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhC
Confidence            45799999999999999999999998655  477899999999999999887668999999999999999995

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.3e-14  Score=119.17  Aligned_cols=71  Identities=23%  Similarity=0.263  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEE-----ccEeeecccccCCcchhHHHHHHHHHHHhhccc
Q 018603           42 HLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTI-----DGQTYESHQFFPTLKEAEHEAAKVALMSLSLDK  114 (353)
Q Consensus        42 ~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I-----~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~~  114 (353)
                      .|||+.||||||++++. |.|.+...||+|.+.|+++|.|     ++..++.|. |.+||+|+|.||+.||+.|...+
T Consensus        26 ~n~Ks~LqE~~Qk~k~~-p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~-G~sKK~AEq~AA~~~l~~L~~~g  101 (113)
T d1uila_          26 ENAKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREH-GSNKKLAAQSCALSLVRQLYHLG  101 (113)
T ss_dssp             HHHHHHHHHHHHHSCCC-CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECC-CSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHhCCCC-CceEEeeeccCCCCeEEEEEEEeeeccCCeEEeecc-cchHHHHHHHHHHHHHHHHHHcC
Confidence            58999999999999986 9999988899999999999999     566677787 59999999999999999997654

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=2.2e-14  Score=108.92  Aligned_cols=64  Identities=34%  Similarity=0.406  Sum_probs=55.1

Q ss_pred             hhHHHHHHHHHHHhcCCCCceEE-eccCCCCCCeEEEEEEECCEEeeecccCCHHHHHHHHHHHHHHHhhC
Q 018603          121 VLYKNVLQELAQKEAYALPVYNT-KQSGESHAPTFVSTVEVGGEVFSGQGAKSKKQAEMSAAKVAYMRLKE  190 (353)
Q Consensus       121 ~n~ks~LqE~~qk~~~~~P~Y~~-~~~Gp~H~~~F~~~V~I~G~~~~~G~G~SKK~AKq~AA~~AL~~L~~  190 (353)
                      +|+++.|+|+     ...|.|++ .+.|++|.+.|+|.|.|+|+.| .|.|+|||+|||+||+.||+.|..
T Consensus         7 K~~l~~L~e~-----~~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Aeq~AA~~aL~~l~~   71 (73)
T d2b7ta1           7 KNALMQLNEI-----KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             HHHHHHHHHH-----CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHhc-----CCCCEEEEEEeeCCCCCceEEEEEEECCEEE-EcCCCcHHHHHHHHHHHHHHHHhh
Confidence            5666666665     24579997 6789999999999999999998 789999999999999999999865

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.9e-13  Score=103.15  Aligned_cols=66  Identities=24%  Similarity=0.206  Sum_probs=59.0

Q ss_pred             cCCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           40 MQHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        40 ~~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      .++||++.|||||++     +.|++ ...||+|.+.|++.|.|+|..| .|. |.|||+||++||+.||+.|.+
T Consensus         2 ~~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~-G~SKK~Ak~~AA~~aL~~L~~   68 (71)
T d2b7va1           2 SGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGS-GRNKKLAKARAAQSALATVFN   68 (71)
T ss_dssp             CSSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEECCEEE-Eec-CCCHHHHHHHHHHHHHHHHHc
Confidence            469999999999874     46887 5889999999999999999988 577 599999999999999999875

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=4.5e-13  Score=103.39  Aligned_cols=71  Identities=20%  Similarity=0.110  Sum_probs=60.0

Q ss_pred             ccCCCHHHHHHHHHHHcCCCCCeeeeeecCCCCCccEEEEEEE-ccEeeecccccCCcchhHHHHHHHHHHHhh
Q 018603           39 DMQHLYKNQLQSYTQKKNLPLPMYSCEREGPPHASRFKCKVTI-DGQTYESHQFFPTLKEAEHEAAKVALMSLS  111 (353)
Q Consensus        39 ~~~~npKS~LqE~~QK~gl~~P~Y~l~~~Gp~h~~~F~~~V~I-~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~  111 (353)
                      ..+.|+|+.|+||||+.++. |.|.+...|++|++.|.+.|.+ ++..++.|. |.|||.|+|.||+.||+.+.
T Consensus         3 ~id~~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~-g~SKK~AEq~AA~~aL~~~~   74 (81)
T d1t4oa_           3 KLDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGV-GRNIKIAGIRAAENALRDKK   74 (81)
T ss_dssp             CCCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEEEE-ESSHHHHHHHHHHHHHHCHH
T ss_pred             ccccCHHHHHHHHHhcCCCC-cEEEEeccCCCCCCCEEEEEEEecCceEEecc-cchhhHHHHHHHHHHHHhcc
Confidence            46799999999999999996 9999976776777778888877 456777787 69999999999999997654

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=1e-11  Score=93.86  Aligned_cols=64  Identities=34%  Similarity=0.381  Sum_probs=53.0

Q ss_pred             CCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhc
Q 018603           42 HLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSL  112 (353)
Q Consensus        42 ~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~  112 (353)
                      +|+++.|+|+   .  ..|.|.+ .+.|++|.+.|++.|.|+|..| .|. |.|||+|+++||+.||+.|..
T Consensus         7 K~~l~~L~e~---~--~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~-G~SKK~Aeq~AA~~aL~~l~~   71 (73)
T d2b7ta1           7 KNALMQLNEI---K--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGS-GPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             HHHHHHHHHH---C--SCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEE-ESSHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHhc---C--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EcC-CCcHHHHHHHHHHHHHHHHhh
Confidence            5555555554   2  3478997 5789999999999999999988 577 599999999999999999865

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.2e-11  Score=94.48  Aligned_cols=66  Identities=27%  Similarity=0.341  Sum_probs=57.2

Q ss_pred             CCCHHHHHHHHHHHcCCCCCeeee-eecCCCCCccEEEEEEEccEeeecccccCCcchhHHHHHHHHHHHhhcc
Q 018603           41 QHLYKNQLQSYTQKKNLPLPMYSC-EREGPPHASRFKCKVTIDGQTYESHQFFPTLKEAEHEAAKVALMSLSLD  113 (353)
Q Consensus        41 ~~npKS~LqE~~QK~gl~~P~Y~l-~~~Gp~h~~~F~~~V~I~g~~~~ag~Gg~SKK~Akq~AAk~AL~~L~~~  113 (353)
                      .+||++.|+|+.     +.|.|.+ ...||+|.+.|++.|.|+|..+ .|. |.|||+|||+||+.||+.|...
T Consensus        11 ~~n~~~~L~e~~-----~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g~-G~SKK~Aeq~AA~~aL~~L~~~   77 (84)
T d2dmya1          11 LMNALMRLNQIR-----PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EAS-GPSKKTAKLHVAVKVLQAMGYP   77 (84)
T ss_dssp             CTHHHHHHHHHS-----CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEE-ESSHHHHHHHHHHHHHHHHTCC
T ss_pred             ccCHHHHHHHhC-----CCCeEEEEEeeCCCCCCeEEEEEEECCEEE-EcC-CCCHHHHHHHHHHHHHHHhCCC
Confidence            488999999973     3478997 6889999999999999999988 477 5999999999999999999643