Citrus Sinensis ID: 018606

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
MREVKVKGASDFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRTS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHccccccHHHHHHHHcccccccEEEEEcccccccccccccEEEEEEcccHHHHHHHHHcccccccccccccccccccccEEEEHHHHcccccHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccHHHHHccccccccccccEEEEEEEEccccHHHHHHHHHccccEEEEcccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccEEEEEEcccccEEEcccccEEEEEccccHHHHHHHHHcccEEEEEcccccccccccccEEEEEEHHHHcccHHHHHHHHHHHHHHHcccccEEEEEEEHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcEccccccccccccccccccccccccccccccEEEEEEEEEEccHHHHHHHHcccEEEEEcccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mrevkvkgasdfctlgadgessihsvstgedqrcssssikstpelEKKYVHRVYDaiaphfsstrfakwpkvatflnslpsgslvldagcgngkylglnpdcffvgcdispsLIKICVDRGHEVLVadavnlpyrsdfgdAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEewigpgsprvrspsartlesipetedngseeqgkepkqsvpdkLWESISltsqseddsvisQDVKIITNqqeyfvpwhlpyhraevSGASACALANglakkddkkgavVYNRYYHVFCDGELERLasdidnavvvdrffdksnwCIVLQRTS
Flexible Loop (DISEMBL)
mrevkvkgasdfctlgadgessihsvstgedqrcssssikstpelEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWaveqedkslvtkwtPLTQkyveewigpgsprvrspsartlesipetedngseeqgkepkqsvpdKLWESISLtsqseddsviSQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGlakkddkkgaVVYNRYYHVFCDGELERLASDIDNAVVVDRFFdksnwcivlqrts
Low Complexity Region (SEG)
MREVKVKGASDFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRTS
Disordered region (IsUnstruct)
***********************************************KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIG*******************************************************ISQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVL****
Disordered Region (DISOPRED)
*********SDFCTLG********************************YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRS*SAR*****PE**********KE**QSVPDKLWESISLTSQSEDDSVISQDVKIITN***************************************VYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRTS
Disordered Region (DISEMBL)
********ASDFCTLGADGE*********************TPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPG************************************KLWESIS*********VISQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRTS
Disordered Region (DISPRO)
*REVKVKGASDFCTLGADGE*******************KSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK**VTKWTPLTQK********************************************************************IITNQQEYFVPWHLPY************************GAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRTS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MREVKVKGASDFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRTS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
Q80Y20	664	Alkylated DNA repair prot	yes	no	0.838	0.445	0.402	1e-57
Q07G10	628	Alkylated DNA repair prot	yes	no	0.730	0.410	0.402	3e-56
A1A4L5	664	Alkylated DNA repair prot	yes	no	0.798	0.424	0.384	1e-54
Q96BT7	664	Alkylated DNA repair prot	yes	no	0.824	0.438	0.379	7e-53
Q95K79	664	Alkylated DNA repair prot	N/A	no	0.784	0.417	0.370	1e-52
P49957	279	tRNA (carboxymethyluridin	yes	no	0.410	0.519	0.476	5e-36
Q9P272	454	Putative methyltransferas	no	no	0.407	0.317	0.462	9e-35
Q80WQ4	447	Putative methyltransferas	no	no	0.407	0.322	0.468	1e-34
Q08DH3	453	Putative methyltransferas	no	no	0.407	0.317	0.462	2e-34
Q10224	228	tRNA (carboxymethyluridin	yes	no	0.399	0.618	0.471	1e-33

>sp|Q80Y20|ALKB8_MOUSE Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus GN=Alkbh8 PE=2 SV=1

 Score =  223 bits (569), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/323 (40%), Positives = 189/323 (58%), Gaps = 27/323 (8%)

Query: 36  SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY 95
           + S K   ELE+K+VH+VY+ IA HFSSTR + WP++  FL +LPSGS+V D GCGNGKY
Sbjct: 361 TESSKEALELEQKHVHQVYNEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKY 420

Query: 96  LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 155
           LG+N D + +GCD S +L+ IC +R  + LV DA+ +P RS   DA ISIAV+HH +T  
Sbjct: 421 LGINKDLYMIGCDRSQNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAE 480

Query: 156 RRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPS 215
           RR +A++EL R+++ G   LI VWA+EQE K+  +K+  L  K + +    G     + +
Sbjct: 481 RRVEALQELARLLRPGGQALIYVWAMEQEYKNQKSKY--LRGKRISQ----GDKDELNSA 534

Query: 216 ARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDS--VISQDVKIITNQ-- 271
             T E +      G  E   +P  SV      S S+T + E  S  V + ++ I  N+  
Sbjct: 535 TSTEEFLVNQTPEGVNE---DPALSV-----NSSSITKEEEYKSRKVPNSELPIHINRTC 586

Query: 272 ---QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLAS 328
              Q+  VPWHL  +     G       +G+A   D   + V++RYYHVFCDGELE    
Sbjct: 587 FHSQDVLVPWHLKRN----PGKDKAIEPSGVAGCPDP--SPVFHRYYHVFCDGELEASCQ 640

Query: 329 DIDNAVVVDRFFDKSNWCIVLQR 351
            + +  ++  ++D+ NWC+VLQ+
Sbjct: 641 AVGDVSILQSYYDQGNWCVVLQK 663

Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. May inhibit apoptosis and promote cell survival and angiogenesis.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2EC: 9

>sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2 SV=2

 Score =  219 bits (558), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 124/308 (40%), Positives = 174/308 (56%), Gaps = 50/308 (16%)

Query: 45  LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF 104
           LE++YVH+VYD IA HFSSTR   WPK+  FL SLP GSLV D GCGNGKYLG+N D   
Sbjct: 369 LEREYVHKVYDDIAGHFSSTRHTPWPKIGDFLASLPKGSLVADVGCGNGKYLGVNKDLCM 428

Query: 105 VGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 164
           +GCD S +L+ IC +R  E  V DA+++P+R+   DA ISIAV+HH +TE RR  A++EL
Sbjct: 429 IGCDRSKNLVDICRERTFEAFVCDALSVPFRAGAFDACISIAVIHHFATEERRIAALQEL 488

Query: 165 VRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 224
           +R+++KG   LI VWA+EQE K   +       KY++E     S   + PS+  L     
Sbjct: 489 IRLLRKGGKALIYVWALEQEYKKNKS-------KYLKE-----SKTSQGPSSDAL----- 531

Query: 225 TEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHL-PYH 283
               G+    K P             L   +   S  SQD+          VPWHL P +
Sbjct: 532 ----GTNLAVKAP-------------LPIHTNRTSFHSQDL---------LVPWHLKPTN 565

Query: 284 RAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKS 343
           +++V+        N    + +     VY+R+YHVFC+GELE + + + N  V   + D+ 
Sbjct: 566 KSKVTP------ENKEQNEKEHGPDSVYHRFYHVFCEGELEAMCNRLSNVAVQHSYHDQG 619

Query: 344 NWCIVLQR 351
           NWC++L++
Sbjct: 620 NWCVILEK 627

Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 9

>sp|A1A4L5|ALKB8_BOVIN Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8 PE=2 SV=1

 Score =  213 bits (543), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/333 (38%), Positives = 181/333 (54%), Gaps = 51/333 (15%)

Query: 38  SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 97
           S K   +LE+ YVHRVY+ IA HFSSTR   WP +  FL +LPSGSLV D GCGNGKYLG
Sbjct: 363 SDKEALQLEQDYVHRVYEEIARHFSSTRHTPWPHIVEFLKALPSGSLVADIGCGNGKYLG 422

Query: 98  LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 157
           +N + + +GCD S +L+ IC +R ++  V DA+ +P RS   DA ISIAV+HH +T  RR
Sbjct: 423 INNELYMIGCDHSQNLVDICRERQYQAFVCDALAVPIRSGSCDACISIAVIHHFATAERR 482

Query: 158 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 217
             A++ELVR+++ G   LI VWA+EQE       +     KY+ E              R
Sbjct: 483 VAALQELVRLLRPGGKALIYVWAMEQE-------YNKKKSKYLRE-------------NR 522

Query: 218 TLESIPETEDNGSEEQGKEPKQSVPD----KLWESISLTSQSEDDSVISQDVK-----II 268
           T + + E   N +  Q    KQ +P+        S+S  +  +D    S++V      I 
Sbjct: 523 TSQGMKEEISNDASVQELLVKQ-LPNVGNQDSAHSVSSINDFQDGGCNSKNVANSKLPIH 581

Query: 269 TNQ-----QEYFVPWHLPYH-----RAEVSGASACALANGLAKKDDKKGAVVYNRYYHVF 318
           TN+     Q+  VPWH   +     R E  G         L  +D      V++RYYHVF
Sbjct: 582 TNRTSFHSQDLLVPWHFKGNPGKDKRVEPFGP--------LGSRDP---GPVFHRYYHVF 630

Query: 319 CDGELERLASDIDNAVVVDRFFDKSNWCIVLQR 351
           C+GELE     ++N  ++  ++D+ NWC++LQ+
Sbjct: 631 CEGELEAACRTLNNISILQSYYDQGNWCVILQK 663

Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. May inhibit apoptosis and promote cell survival and angiogenesis.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 9

>sp|Q96BT7|ALKB8_HUMAN Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens GN=ALKBH8 PE=1 SV=2

 Score =  207 bits (528), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 123/324 (37%), Positives = 177/324 (54%), Gaps = 33/324 (10%)

Query: 38  SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 97
           S K    LE++YVH+VY+ IA HFSSTR   WP +  FL +LPSGS+V D GCGNGKYLG
Sbjct: 363 SDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLG 422

Query: 98  LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 157
           +N + + +GCD S +L+ IC +R  +  V DA+ +P RS   DA ISIAV+HH +T  RR
Sbjct: 423 INKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERR 482

Query: 158 KKAIEELVRVVKKGSLVLITVWAVEQE---DKSLVTKWTPLTQKYVEEWIGPGS------ 208
             A++E+VR+++ G   LI VWA+EQE    KS   +    +Q   EE     S      
Sbjct: 483 VAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSVQRSLV 542

Query: 209 PRVRSPSAR-TLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKI 267
            ++R   +R +  S+P   D  S+E G   +Q    KL   ++ T      S  SQDV  
Sbjct: 543 EQMRDMGSRDSASSVPRIND--SQEGGCNSRQVSNSKLPVHVNRT------SFYSQDV-- 592

Query: 268 ITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLA 327
                   VPWHL   +              +  +D    + V++RYYHVF +GELE   
Sbjct: 593 -------LVPWHL---KGNPDKGKPVEPFGPIGSQDP---SPVFHRYYHVFREGELEGAC 639

Query: 328 SDIDNAVVVDRFFDKSNWCIVLQR 351
             + +  ++  ++D+ NWC++LQ+
Sbjct: 640 RTVSDVRILQSYYDQGNWCVILQK 663

Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. May inhibit apoptosis and promote cell survival and angiogenesis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 9

>sp|Q95K79|ALKB8_MACFA Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis GN=ALKBH8 PE=2 SV=1

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 174/324 (53%), Gaps = 47/324 (14%)

Query: 45  LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF 104
           LE++YVH+VY+ IA HFSSTR   WP +  FL +LPSGS+V D GCGNGKYLG+N + + 
Sbjct: 370 LEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLGVNKELYM 429

Query: 105 VGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 164
           VGCD S +L+ IC +R  +  V DA+ +P RS   DA ISIAV+HH +T  RR  A++E+
Sbjct: 430 VGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERRVAALQEI 489

Query: 165 VRVVKKGSLVLITVWAVEQEDKSLVTKW-----------------TPLTQKYVEEWIGPG 207
           VR+++ G   LI VWA+EQE     +K+                 T + +  VE+    G
Sbjct: 490 VRLLRPGGKALIYVWAMEQEYNKQKSKYLKGNRNSQGKKEEMNSDTSVQRSLVEQMPDMG 549

Query: 208 SPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKI 267
                  S  +  S+P   D  S+E G   +Q    KL   ++ T      S  SQD+  
Sbjct: 550 -------SRDSASSVPRIND--SQEGGCNSRQVSNSKLPIHVNRT------SFYSQDM-- 592

Query: 268 ITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLA 327
                   VPWHL   +              +  +D    + V++RYYHVF +GELE L 
Sbjct: 593 -------LVPWHL---KGNPDKGKPVEPFGPIGSQDP---SPVFHRYYHVFREGELEALC 639

Query: 328 SDIDNAVVVDRFFDKSNWCIVLQR 351
             + +  ++  ++D+ NWC++LQ+
Sbjct: 640 RTVSDVRILQSYYDQGNWCVILQK 663

Catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA. Catalyzes the last step in the formation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA. Has a preference for tRNA(Arg) and tRNA(Glu), and does not bind tRNA(Lys). Required for normal survival after DNA damage. May inhibit apoptosis and promote cell survival and angiogenesis.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 9

>sp|P49957|TRM9_YEAST tRNA (carboxymethyluridine(34)-5-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM9 PE=1 SV=1

 Score =  152 bits (383), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 99/147 (67%), Gaps = 2/147 (1%)

Query: 39  IKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL 98
           I    E E++YVH+VY+ IAPHFS TR+  WP V  FL + P GS+ +D GCGNGKYLG+
Sbjct: 3   INQAAEKEQEYVHKVYNEIAPHFSQTRYKPWPIVTQFLKTRPMGSIGIDVGCGNGKYLGV 62

Query: 99  NPDCFFVGCDISPSLIKIC--VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 156
           NPD + +G D S  LI+    ++  + +LVAD +NLP++++  D AISIAV+HH ST  R
Sbjct: 63  NPDIYIIGSDRSDGLIECARGINPSYNLLVADGLNLPHKNETFDFAISIAVVHHWSTRER 122

Query: 157 RKKAIEELVRVVKKGSLVLITVWAVEQ 183
           R + I  ++  +++G   LI  WA+EQ
Sbjct: 123 RVEVIRHVLSKLRQGGQALIYCWALEQ 149

Required for the methylation of the wobble bases at position 34 in tRNA. Appears to have a role in stress-response.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 9

>sp|Q9P272|K1456_HUMAN Putative methyltransferase KIAA1456 OS=Homo sapiens GN=KIAA1456 PE=2 SV=3

 Score =  147 bits (372), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 67/145 (46%), Positives = 96/145 (66%)

Query: 44  ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 103
           +LEK++VH VY++ AP+FS  +   WP+V  FL     GSL+ D GCG GKYL +N    
Sbjct: 7   QLEKQHVHNVYESTAPYFSDLQSKAWPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVH 66

Query: 104 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 163
            VGCD    L++I  +RG E +V D +NLP+R +  DA ISI V+HH ST+ RR +AI+E
Sbjct: 67  TVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTKQRRIRAIKE 126

Query: 164 LVRVVKKGSLVLITVWAVEQEDKSL 188
           + RV+  G  ++I VWA+EQ+++  
Sbjct: 127 MARVLVPGGQLMIYVWAMEQKNRHF 151

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q80WQ4|K1456_MOUSE Putative methyltransferase KIAA1456 OS=Mus musculus GN=Kiaa1456 PE=2 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/145 (46%), Positives = 95/145 (65%)

Query: 44  ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 103
           ELEK++VH VY+  AP+F+  +   WP+V  FL     GSLV D GCG GKYL +N    
Sbjct: 7   ELEKRHVHSVYENTAPYFTDLQSKAWPRVRQFLQDQKPGSLVADIGCGTGKYLKVNSQVH 66

Query: 104 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 163
            +GCD    L++I  +RG EV+V D +NLP+R    DA ISI V+HH ST+ RR +AI+E
Sbjct: 67  TLGCDYCGPLVEIARNRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKERRIRAIKE 126

Query: 164 LVRVVKKGSLVLITVWAVEQEDKSL 188
           + RV+  G  ++I VWA+EQ+++  
Sbjct: 127 MARVLAPGGQLMIYVWAMEQKNRRF 151

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q08DH3|K1456_BOVIN Putative methyltransferase KIAA1456 homolog OS=Bos taurus PE=2 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/145 (46%), Positives = 95/145 (65%)

Query: 44  ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 103
           +LEK++VH VY++ AP+FS  +   WP+V  FL     GSL+ D GCG GKYL +N    
Sbjct: 7   QLEKQHVHDVYESTAPYFSDLQSKAWPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVH 66

Query: 104 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 163
            +GCD    L++I   RG EV+V D +NLP+R    DA ISI V+HH ST+ RR +AI+E
Sbjct: 67  TLGCDYCAPLVEIARSRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKQRRIRAIKE 126

Query: 164 LVRVVKKGSLVLITVWAVEQEDKSL 188
           + RV+  G  ++I VWA+EQ+++  
Sbjct: 127 MARVLVPGGQLMIYVWAMEQKNRHF 151

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q10224|TRM9_SCHPO tRNA (carboxymethyluridine(34)-5-O)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm9 PE=3 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/142 (47%), Positives = 99/142 (69%), Gaps = 1/142 (0%)

Query: 44  ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 103
           E E +YVH+VYD IA HFS TR+  WP V  FL SLP GS+ +D GCGNGKY  +NP+ +
Sbjct: 4   EYENEYVHQVYDKIATHFSDTRYKPWPVVEKFLKSLPLGSVGVDIGCGNGKYQKVNPNVY 63

Query: 104 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 163
            +G D    L+KI  + G  ++++D +++P+ S+  D A+SIAV+HH S E+RR +A++E
Sbjct: 64  MIGSDRCVKLVKIASNLG-PMVISDGLHVPHPSNRFDFALSIAVIHHFSNENRRLQAVQE 122

Query: 164 LVRVVKKGSLVLITVWAVEQED 185
           ++R + KG   L  VWA+EQ++
Sbjct: 123 VLRPLVKGGKALFFVWALEQKN 144

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
255545596	390	S-adenosylmethionine-dependent methyltra	0.997	0.902	0.765	1e-154
224066905	369	predicted protein [Populus trichocarpa]	0.994	0.951	0.715	1e-150
302141903	391	unnamed protein product [Vitis vinifera]	0.994	0.897	0.761	1e-148
225459401	347	PREDICTED: alkylated DNA repair protein	0.974	0.991	0.765	1e-146
449441742	391	PREDICTED: alkylated DNA repair protein	0.988	0.892	0.703	1e-142
363807694	375	uncharacterized protein LOC100807751 [Gl	0.951	0.896	0.683	1e-136
356508138	374	PREDICTED: alkylated DNA repair protein	0.943	0.890	0.682	1e-132
297846670	378	hypothetical protein ARALYDRAFT_473716 [	1.0	0.933	0.657	1e-128
115448705	367	Os02g0750500 [Oryza sativa Japonica Grou	0.903	0.869	0.689	1e-127
222623679	327	hypothetical protein OsJ_08398 [Oryza sa	0.903	0.975	0.689	1e-127

>gi|255545596|ref|XP_002513858.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223546944|gb|EEF48441.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/354 (76%), Positives = 308/354 (87%), Gaps = 2/354 (0%)

Query: 1   MREVKVKGASDFCTLGADGESSIH-SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAP 59
           MRE+KVKG S    + +DGES I  S+S  E Q CSSSS++STPE+EKKYVH VYDAIAP
Sbjct: 38  MREIKVKGPSGLSNVASDGESQIQLSLSADEKQVCSSSSVQSTPEIEKKYVHHVYDAIAP 97

Query: 60  HFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVD 119
           HFSSTRFAKWPKVATFLNSLPSGSL+LDAGCGNGKYLGLNPDC+F+GCDIS  LIKIC D
Sbjct: 98  HFSSTRFAKWPKVATFLNSLPSGSLILDAGCGNGKYLGLNPDCYFIGCDISAPLIKICAD 157

Query: 120 RGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179
           RGHEVLV DAVNLPYR+ F DAAISIAVLHHLSTE+RRKKAIEELVRVVKKG LVLITVW
Sbjct: 158 RGHEVLVGDAVNLPYRTGFSDAAISIAVLHHLSTENRRKKAIEELVRVVKKGGLVLITVW 217

Query: 180 AVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQ 239
           AVEQED SLV KWTPL+QKYVEEWIGPGSPRVRSPS+ TLESIPETE+N S+E  ++ ++
Sbjct: 218 AVEQEDGSLVAKWTPLSQKYVEEWIGPGSPRVRSPSSFTLESIPETEENNSKELIQDSEK 277

Query: 240 SVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGL 299
           +  ++  +++   SQ+E +SV  +D K   NQQEYFVPWHLPYHRAEVSGASACALA+GL
Sbjct: 278 NADEEFMKTMDSISQTEHNSVF-KDEKNAKNQQEYFVPWHLPYHRAEVSGASACALASGL 336

Query: 300 AKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRTS 353
           AKKDDKKGAVVYNRYYHVF +GELERL + + NAVVVDRFFDKSNWC++L++TS
Sbjct: 337 AKKDDKKGAVVYNRYYHVFSEGELERLVTGMKNAVVVDRFFDKSNWCVILEKTS 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066905|ref|XP_002302272.1| predicted protein [Populus trichocarpa] gi|222843998|gb|EEE81545.1| predicted protein [Populus trichocarpa]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/369 (71%), Positives = 298/369 (80%), Gaps = 18/369 (4%)

Query: 1   MREVKVKGASDFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPH 60
           MR +KVKG S   TL +DGES +  +   E++  SSSS++STPE+EK YVHRVYDAIAPH
Sbjct: 1   MRGIKVKGLSCLRTLVSDGESHVQPMPLVEEETGSSSSVQSTPEIEKNYVHRVYDAIAPH 60

Query: 61  FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR 120
           FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG NPDC FVGCDIS  LIKIC DR
Sbjct: 61  FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGFNPDCTFVGCDISGPLIKICADR 120

Query: 121 GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180
           GHEVLVADAVNLPYR+ FGDAAISIAVLHHLSTE+RRK+AI+ELVR VKKG L+LITVWA
Sbjct: 121 GHEVLVADAVNLPYRTGFGDAAISIAVLHHLSTENRRKRAIDELVRAVKKGGLILITVWA 180

Query: 181 VEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ------G 234
           VEQED+SLVTKWTPL QKYV+EWIGPGSPR+RSPS+ TLESIPETE+N  E +       
Sbjct: 181 VEQEDRSLVTKWTPLNQKYVDEWIGPGSPRIRSPSSITLESIPETENNSKEHEKDTESLN 240

Query: 235 KEPKQSVPDKLWESISLTSQSEDDS------------VISQDVKIITNQQEYFVPWHLPY 282
             P     + + E+ + + + E D+              S+D   + NQQEYFVPWHLPY
Sbjct: 241 HNPSPITLESIPETENNSKEHEKDTESLNHEFKGTMPSTSKDDSSVQNQQEYFVPWHLPY 300

Query: 283 HRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDK 342
           HRAEVSGASACAL NGLAKKDDKKGAVVYNRYYHVF +GELERL S ++NAVVVDRFFDK
Sbjct: 301 HRAEVSGASACALENGLAKKDDKKGAVVYNRYYHVFSEGELERLVSGMNNAVVVDRFFDK 360

Query: 343 SNWCIVLQR 351
           SNWCI+LQ+
Sbjct: 361 SNWCIILQK 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141903|emb|CBI19106.3| unnamed protein product [Vitis vinifera]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/352 (76%), Positives = 302/352 (85%), Gaps = 1/352 (0%)

Query: 2   REVKVKGASDFCTLGADGESSIH-SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPH 60
           RE KV  AS  CTL +DGES    S+   +DQ C  S+++STPE+EKKYVH VYDAIAPH
Sbjct: 39  REGKVDMASSLCTLVSDGESHTQPSLIVSQDQICPVSNVQSTPEIEKKYVHHVYDAIAPH 98

Query: 61  FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR 120
           FSSTRFAKWPKVATFL SLPSGSLVLDAGCGNGKYLGL+PDCFF+GCDIS  LI IC DR
Sbjct: 99  FSSTRFAKWPKVATFLKSLPSGSLVLDAGCGNGKYLGLSPDCFFIGCDISAPLINICADR 158

Query: 121 GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180
            HEV+VADAVNLPYR+ FGDAAISIAVLHHLSTESRRKKAI+ELVRVVKKG LVLITVWA
Sbjct: 159 DHEVVVADAVNLPYRTGFGDAAISIAVLHHLSTESRRKKAIQELVRVVKKGGLVLITVWA 218

Query: 181 VEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQS 240
           VEQED+SLVTKWTPL+ KYVEEWIGP SPR+RSPS+ TLESIPETE+NGS E  K+ K+ 
Sbjct: 219 VEQEDRSLVTKWTPLSPKYVEEWIGPSSPRIRSPSSFTLESIPETEENGSGEHLKDLKEI 278

Query: 241 VPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLA 300
             + L +++  T Q+EDDS+  +  K I + QEYFVPWHLPYHRAEVSGASACALANGLA
Sbjct: 279 SNENLQDTMHSTCQTEDDSMTFKIKKNIESHQEYFVPWHLPYHRAEVSGASACALANGLA 338

Query: 301 KKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRT 352
           KKDDKKGAVVYNRYYHVF +GELERL S +DNAV+VD+FFDKSNWCI+L++T
Sbjct: 339 KKDDKKGAVVYNRYYHVFSEGELERLVSGMDNAVIVDQFFDKSNWCIILEKT 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459401|ref|XP_002284289.1| PREDICTED: alkylated DNA repair protein alkB homolog 8 [Vitis vinifera]

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 264/345 (76%), Positives = 298/345 (86%), Gaps = 1/345 (0%)

Query: 9   ASDFCTLGADGESSIH-SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFA 67
           AS  CTL +DGES    S+   +DQ C  S+++STPE+EKKYVH VYDAIAPHFSSTRFA
Sbjct: 2   ASSLCTLVSDGESHTQPSLIVSQDQICPVSNVQSTPEIEKKYVHHVYDAIAPHFSSTRFA 61

Query: 68  KWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVA 127
           KWPKVATFL SLPSGSLVLDAGCGNGKYLGL+PDCFF+GCDIS  LI IC DR HEV+VA
Sbjct: 62  KWPKVATFLKSLPSGSLVLDAGCGNGKYLGLSPDCFFIGCDISAPLINICADRDHEVVVA 121

Query: 128 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 187
           DAVNLPYR+ FGDAAISIAVLHHLSTESRRKKAI+ELVRVVKKG LVLITVWAVEQED+S
Sbjct: 122 DAVNLPYRTGFGDAAISIAVLHHLSTESRRKKAIQELVRVVKKGGLVLITVWAVEQEDRS 181

Query: 188 LVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKLWE 247
           LVTKWTPL+ KYVEEWIGP SPR+RSPS+ TLESIPETE+NGS E  K+ K+   + L +
Sbjct: 182 LVTKWTPLSPKYVEEWIGPSSPRIRSPSSFTLESIPETEENGSGEHLKDLKEISNENLQD 241

Query: 248 SISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKG 307
           ++  T Q+EDDS+  +  K I + QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKG
Sbjct: 242 TMHSTCQTEDDSMTFKIKKNIESHQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKG 301

Query: 308 AVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRT 352
           AVVYNRYYHVF +GELERL S +DNAV+VD+FFDKSNWCI+L++T
Sbjct: 302 AVVYNRYYHVFSEGELERLVSGMDNAVIVDQFFDKSNWCIILEKT 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441742|ref|XP_004138641.1| PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Cucumis sativus] gi|449490102|ref|XP_004158508.1| PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Cucumis sativus]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/351 (70%), Positives = 290/351 (82%), Gaps = 2/351 (0%)

Query: 1   MREVKVKGASDFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPH 60
           M+E+K+KG S+      + E+  H+  +   Q C++S+++ TPE+EKKYVHRVYDAIAPH
Sbjct: 41  MKEIKIKGGSNADPHPLNDET--HAQLSCAIQGCTASNVQCTPEIEKKYVHRVYDAIAPH 98

Query: 61  FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR 120
           FSSTRFAKWPKVA+FL+SLP GSLVLDAGCGNGKYLG N +CFF+GCDIS  LIKIC +R
Sbjct: 99  FSSTRFAKWPKVASFLSSLPLGSLVLDAGCGNGKYLGYNSNCFFIGCDISAQLIKICNER 158

Query: 121 GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180
           GHEVLVADAVNLPYR+ FGDAAISIAVLHHLSTE+RRKKAIEEL+RVVKKG LVLITVWA
Sbjct: 159 GHEVLVADAVNLPYRTGFGDAAISIAVLHHLSTENRRKKAIEELIRVVKKGGLVLITVWA 218

Query: 181 VEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQS 240
           VEQEDKSL+TKW PL++KYVEEW+GPGSPRVRSPS+  LESIPE  +N S    K+ K++
Sbjct: 219 VEQEDKSLLTKWMPLSEKYVEEWVGPGSPRVRSPSSMALESIPEMNENNSGICLKDSKEN 278

Query: 241 VPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLA 300
           +   + E+    SQSE+D        ++  QQEYFVPWHLPYHRAEVSG SA ALA+GLA
Sbjct: 279 LTGSIPENKPPPSQSENDLANCNHENLLKTQQEYFVPWHLPYHRAEVSGTSASALASGLA 338

Query: 301 KKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQR 351
           KKDDKK AVVYNRYYHVF +GELE L S +DNAVVVDRF+DKSNWCIVL++
Sbjct: 339 KKDDKKAAVVYNRYYHVFSEGELEGLISGMDNAVVVDRFYDKSNWCIVLEK 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807694|ref|NP_001242166.1| uncharacterized protein LOC100807751 [Glycine max] gi|255639634|gb|ACU20111.1| unknown [Glycine max]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/354 (68%), Positives = 281/354 (79%), Gaps = 18/354 (5%)

Query: 1   MREVKVKGASDFCTLGADGESSI-HSVS-TGEDQRCSSSSIKSTPELEKKYVHRVYDAIA 58
           M+E+  K  S  CTL  + E  I  S+S +G     SS S+KSTPE+EKK+VH VYDAIA
Sbjct: 37  MKEINCKVDSSSCTLAPNREPCITESLSVSGNGTTTSSMSVKSTPEIEKKFVHHVYDAIA 96

Query: 59  PHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICV 118
           PHFS+TRFAKWPKVA FL+SLP GSLVLDAGCGNGKYLGLN DCFF+GCDISPSLIKIC 
Sbjct: 97  PHFSATRFAKWPKVAAFLSSLPLGSLVLDAGCGNGKYLGLNQDCFFMGCDISPSLIKICS 156

Query: 119 DRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178
           DR HEVLVADAVNLPYR+ FGDAAISIAVLHHLSTE+RR+KAIEELVRVVKKG  VLITV
Sbjct: 157 DREHEVLVADAVNLPYRTGFGDAAISIAVLHHLSTENRRRKAIEELVRVVKKGGRVLITV 216

Query: 179 WAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPK 238
           WAVEQED  L+TKWTPL +KYV+EW+GPGSP  R+PS+ +LESIPE+E + S E  +   
Sbjct: 217 WAVEQEDSKLITKWTPLNEKYVDEWVGPGSPHTRAPSSSSLESIPESEVSTSGEHMEVCH 276

Query: 239 QSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHRAEVSGASACALANG 298
           ++   +  E                + K I NQQEYFVPWHLPYHRAE+SGASA ALA G
Sbjct: 277 EAHASRYLE----------------EEKNIKNQQEYFVPWHLPYHRAEISGASAEALAAG 320

Query: 299 LAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRT 352
           LA KDDKKGAVVYNRYYHVF +GELE L ++I+NA++VD+FFDKSNWCI+L++T
Sbjct: 321 LATKDDKKGAVVYNRYYHVFSEGELESLTTEINNAIIVDQFFDKSNWCIILEKT 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508138|ref|XP_003522817.1| PREDICTED: alkylated DNA repair protein alkB homolog 8-like [Glycine max]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/356 (68%), Positives = 282/356 (79%), Gaps = 23/356 (6%)

Query: 1   MREVKVKGASDFCTLGADGESSI-HSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAP 59
           M+E+  K  S  CTL  + E  I  S+S   +   SS+S+KSTPE+EKKYVH VYDAIAP
Sbjct: 37  MKEINCKVDSSSCTLAPNREPCITDSLSVSGNCTTSSTSVKSTPEIEKKYVHHVYDAIAP 96

Query: 60  HFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVD 119
           HFS+TRFAKWPKVA FL+SLP GSLV DAGCGNGKYLGLN DCFF+GCDISPSLIKIC+D
Sbjct: 97  HFSATRFAKWPKVAAFLSSLPLGSLVFDAGCGNGKYLGLNQDCFFIGCDISPSLIKICLD 156

Query: 120 RGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179
           R HEVLVADAVNLPYR+ FGD AISIAVLHHLSTE+RR+KAIEELVRVVKKG LVLITVW
Sbjct: 157 REHEVLVADAVNLPYRTGFGDVAISIAVLHHLSTENRRRKAIEELVRVVKKGGLVLITVW 216

Query: 180 AVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQ 239
           AVEQED  L+TKWTPL +KYV+EW+GPGSPR R+PS+ +LESIPE+E + S E       
Sbjct: 217 AVEQEDSKLITKWTPLNEKYVDEWVGPGSPRTRAPSSSSLESIPESEVSRSGEH------ 270

Query: 240 SVPDKLWESISLTSQSEDDSVISQDV---KIITNQQEYFVPWHLPYHRAEVSGASACALA 296
                         +  ++  +S+D+   K I NQQEYFVPWHLPYHRAE+SGASA ALA
Sbjct: 271 -------------MEVCNEPHVSRDLEEEKNIKNQQEYFVPWHLPYHRAEISGASAEALA 317

Query: 297 NGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRT 352
            GLA KDDKKGAVVYNRYYHVF +GELE L + I+NA +VD+FFDKSNWCI+L++T
Sbjct: 318 AGLATKDDKKGAVVYNRYYHVFSEGELESLTTGINNARIVDQFFDKSNWCIILEKT 373

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846670|ref|XP_002891216.1| hypothetical protein ARALYDRAFT_473716 [Arabidopsis lyrata subsp. lyrata] gi|297337058|gb|EFH67475.1| hypothetical protein ARALYDRAFT_473716 [Arabidopsis lyrata subsp. lyrata]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/374 (65%), Positives = 287/374 (76%), Gaps = 21/374 (5%)

Query: 1   MREVKVKGASDFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPH 60
           MR++KVK  S      +D E     +      R SS S+KSTPE+EKKYVHRVYDAIAPH
Sbjct: 1   MRDIKVKSDSKEFLTSSDEEEETVQIIESVSIRESSLSVKSTPEIEKKYVHRVYDAIAPH 60

Query: 61  FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR 120
           FSSTRFAKWPKVA FL SLP GS++LDAGCGNGKYLGLNP CFF+GCDIS  LIKIC D+
Sbjct: 61  FSSTRFAKWPKVAAFLESLPPGSVILDAGCGNGKYLGLNPSCFFIGCDISHPLIKICSDK 120

Query: 121 GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180
           G EV+VADAVNLPYR +FGDAAISIAVLHHLSTE+RRKKAIEELVRVVK G  VLITVWA
Sbjct: 121 GQEVVVADAVNLPYREEFGDAAISIAVLHHLSTENRRKKAIEELVRVVKPGGYVLITVWA 180

Query: 181 VEQEDKSLVTKWTPLTQKYVEEWIGPG----SPRVRSPSARTLESIPETEDNGSEEQGK- 235
            EQED SL+TKWTPL+ KYVEEW+GPG    SPRVR+    +LESIPETE +  E++ + 
Sbjct: 181 AEQEDTSLLTKWTPLSAKYVEEWVGPGSPMNSPRVRNNPFFSLESIPETEVSTKEQKAEN 240

Query: 236 ----------EPKQSVPDKLWESI------SLTSQSEDDSVISQDVKIITNQQEYFVPWH 279
                     E ++S  ++  ESI      S+  Q +++SV      +  +QQEYFVPWH
Sbjct: 241 SPFIGLESIPESEESTREQRGESIIPETKASVVEQKDENSVDESLEALKKSQQEYFVPWH 300

Query: 280 LPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRF 339
           LPYHRAEVSGASA ALA+GLAKKDD+KGAVVYNRYYHVF +GELERLAS + NA++VDRF
Sbjct: 301 LPYHRAEVSGASASALASGLAKKDDRKGAVVYNRYYHVFSEGELERLASGVGNAMIVDRF 360

Query: 340 FDKSNWCIVLQRTS 353
           +DKSNWCIVLQ+ +
Sbjct: 361 YDKSNWCIVLQKAA 374

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115448705|ref|NP_001048132.1| Os02g0750500 [Oryza sativa Japonica Group] gi|46390207|dbj|BAD15638.1| methyltransferase-like [Oryza sativa Japonica Group] gi|113537663|dbj|BAF10046.1| Os02g0750500 [Oryza sativa Japonica Group] gi|215678876|dbj|BAG95313.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/328 (68%), Positives = 265/328 (80%), Gaps = 9/328 (2%)

Query: 25  SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSL 84
           +VST  +  CSS  ++STP++EKKYVHRVYDAIAPHFSSTRFAKWPKVA FLNSL  GS+
Sbjct: 47  TVSTEGNNSCSS--VQSTPDIEKKYVHRVYDAIAPHFSSTRFAKWPKVAGFLNSLRPGSV 104

Query: 85  VLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAIS 144
           +LDAGCGNGKYLG NPDC F+GCDISP LI IC  RGHEVLVADAVNLPYR +FGDAAIS
Sbjct: 105 ILDAGCGNGKYLGFNPDCLFIGCDISPPLIDICAGRGHEVLVADAVNLPYRDNFGDAAIS 164

Query: 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 204
           IAVLHHLST++RR+KAIEEL+RVV+KG LVLITVWAVEQEDKSL+ KWTPL +KY EEW+
Sbjct: 165 IAVLHHLSTDARRRKAIEELIRVVRKGGLVLITVWAVEQEDKSLLNKWTPLCEKYNEEWV 224

Query: 205 GPGSPRVRSPSARTLESIPET-EDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 263
            P SP VR+ S   LESI ET ED G+ +Q  +  +   D L ++  +T     +S I +
Sbjct: 225 DPSSPPVRNQSNTVLESISETDEDTGAVKQRNDDLKISNDGLDDNADVTCS---NSNIDE 281

Query: 264 DVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGEL 323
             K    QQEYFVPWHLP+HRAE+ GASA AL NG AK+DDKKG VVYNRYYHVF +GEL
Sbjct: 282 YHK---TQQEYFVPWHLPFHRAEIGGASAAALENGFAKRDDKKGTVVYNRYYHVFVEGEL 338

Query: 324 ERLASDIDNAVVVDRFFDKSNWCIVLQR 351
           +RL + I+NAVVVD+F+DKSNWCIVL++
Sbjct: 339 QRLVAGINNAVVVDQFYDKSNWCIVLEK 366

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222623679|gb|EEE57811.1| hypothetical protein OsJ_08398 [Oryza sativa Japonica Group]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/328 (68%), Positives = 265/328 (80%), Gaps = 9/328 (2%)

Query: 25  SVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSL 84
           +VST  +  CSS  ++STP++EKKYVHRVYDAIAPHFSSTRFAKWPKVA FLNSL  GS+
Sbjct: 7   TVSTEGNNSCSS--VQSTPDIEKKYVHRVYDAIAPHFSSTRFAKWPKVAGFLNSLRPGSV 64

Query: 85  VLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAIS 144
           +LDAGCGNGKYLG NPDC F+GCDISP LI IC  RGHEVLVADAVNLPYR +FGDAAIS
Sbjct: 65  ILDAGCGNGKYLGFNPDCLFIGCDISPPLIDICAGRGHEVLVADAVNLPYRDNFGDAAIS 124

Query: 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 204
           IAVLHHLST++RR+KAIEEL+RVV+KG LVLITVWAVEQEDKSL+ KWTPL +KY EEW+
Sbjct: 125 IAVLHHLSTDARRRKAIEELIRVVRKGGLVLITVWAVEQEDKSLLNKWTPLCEKYNEEWV 184

Query: 205 GPGSPRVRSPSARTLESIPET-EDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 263
            P SP VR+ S   LESI ET ED G+ +Q  +  +   D L ++  +T     +S I +
Sbjct: 185 DPSSPPVRNQSNTVLESISETDEDTGAVKQRNDDLKISNDGLDDNADVTCS---NSNIDE 241

Query: 264 DVKIITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGEL 323
             K    QQEYFVPWHLP+HRAE+ GASA AL NG AK+DDKKG VVYNRYYHVF +GEL
Sbjct: 242 YHK---TQQEYFVPWHLPFHRAEIGGASAAALENGFAKRDDKKGTVVYNRYYHVFVEGEL 298

Query: 324 ERLASDIDNAVVVDRFFDKSNWCIVLQR 351
           +RL + I+NAVVVD+F+DKSNWCIVL++
Sbjct: 299 QRLVAGINNAVVVDQFYDKSNWCIVLEK 326

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2035947	404	AT1G36310 [Arabidopsis thalian	0.762	0.665	0.659	4.6e-89
MGI|MGI:1914917	664	Alkbh8 "alkB, alkylation repai	0.838	0.445	0.402	6.8e-56
RGD|1304687	629	Alkbh8 "alkB, alkylation repai	0.832	0.467	0.398	6.1e-55
UNIPROTKB|F1P0F6	673	ALKBH8 "Uncharacterized protei	0.841	0.441	0.391	3.4e-54
UNIPROTKB|I3LA93	665	ALKBH8 "Uncharacterized protei	0.841	0.446	0.387	3.8e-53
UNIPROTKB|A1A4L5	664	ALKBH8 "Alkylated DNA repair p	0.847	0.450	0.373	5.6e-52
UNIPROTKB|E2REE7	674	ALKBH8 "Uncharacterized protei	0.827	0.433	0.384	1.7e-50
UNIPROTKB|Q96BT7	664	ALKBH8 "Alkylated DNA repair p	0.824	0.438	0.379	4.6e-50
UNIPROTKB|Q95K79	664	ALKBH8 "Alkylated DNA repair p	0.841	0.447	0.377	7.4e-50
ZFIN|ZDB-GENE-030131-4851	412	zgc:73340 "zgc:73340" [Danio r	0.439	0.376	0.437	2e-45

TAIR|locus:2035947 AT1G36310 [Arabidopsis thaliana (taxid:3702)]

 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 184/279 (65%), Positives = 214/279 (76%)

Query:     1 MREVKVKGAS-DFCTLGADGESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAP 59
             MR++KVK  S +F T  +D E    SVS       S SS+KSTPE+EKKYVHRVYDAIAP
Sbjct:    29 MRDIKVKSDSKEFLT-SSDEEEE--SVSIRVSSSSSLSSVKSTPEIEKKYVHRVYDAIAP 85

Query:    60 HFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVD 119
             HFSSTRFAKWPKVA FL SLPSGS++LDAGCGNGKYLGLNP CFF+GCDIS  LIKIC D
Sbjct:    86 HFSSTRFAKWPKVAAFLESLPSGSVILDAGCGNGKYLGLNPSCFFIGCDISHPLIKICSD 145

Query:   120 RGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179
             +G EVLVADAVNLPYR +FGDAAISIAVLHHLSTE+RRKKAIEELVRVVK G  VLITVW
Sbjct:   146 KGQEVLVADAVNLPYREEFGDAAISIAVLHHLSTENRRKKAIEELVRVVKPGGFVLITVW 205

Query:   180 AVEQEDKSLVTKWTPLTQKYVEEWIGPGSP----RVRSPSARTLESIPETEDNGSEEQGK 235
             A EQED SL+TKWTPL+ KYVEEW+GPGSP    RVR+    +LESIPETE + ++EQ  
Sbjct:   206 AAEQEDTSLLTKWTPLSAKYVEEWVGPGSPMNSPRVRNNPFFSLESIPETEVS-TKEQKV 264

Query:   236 EPKQSVP-DKLWESISLTSQSEDDSVISQDVKIITNQQE 273
             E  Q +  + + ES   T + + +S+I +    I  Q++
Sbjct:   265 ENSQFIGLESIPESEESTREQKGESIIPETKASIVEQKD 303

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0002098 "tRNA wobble uridine modification" evidence=IMP

GO:0008175 "tRNA methyltransferase activity" evidence=IDA

MGI|MGI:1914917 Alkbh8 "alkB, alkylation repair homolog 8 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 130/323 (40%), Positives = 189/323 (58%)

Query:    36 SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY 95
             + S K   ELE+K+VH+VY+ IA HFSSTR + WP++  FL +LPSGS+V D GCGNGKY
Sbjct:   361 TESSKEALELEQKHVHQVYNEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKY 420

Query:    96 LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 155
             LG+N D + +GCD S +L+ IC +R  + LV DA+ +P RS   DA ISIAV+HH +T  
Sbjct:   421 LGINKDLYMIGCDRSQNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAE 480

Query:   156 RRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPS 215
             RR +A++EL R+++ G   LI VWA+EQE K+  +K+  L  K + +    G     + +
Sbjct:   481 RRVEALQELARLLRPGGQALIYVWAMEQEYKNQKSKY--LRGKRISQ----GDKDELNSA 534

Query:   216 ARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDS--VISQDVKIITNQ-- 271
               T E +      G  E   +P  SV      S S+T + E  S  V + ++ I  N+  
Sbjct:   535 TSTEEFLVNQTPEGVNE---DPALSV-----NSSSITKEEEYKSRKVPNSELPIHINRTC 586

Query:   272 ---QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLAS 328
                Q+  VPWHL  +     G       +G+A   D   + V++RYYHVFCDGELE    
Sbjct:   587 FHSQDVLVPWHLKRN----PGKDKAIEPSGVAGCPDP--SPVFHRYYHVFCDGELEASCQ 640

Query:   329 DIDNAVVVDRFFDKSNWCIVLQR 351
              + +  ++  ++D+ NWC+VLQ+
Sbjct:   641 AVGDVSILQSYYDQGNWCVVLQK 663

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016300 "tRNA (uracil) methyltransferase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030488 "tRNA methylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|1304687 Alkbh8 "alkB, alkylation repair homolog 8 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 128/321 (39%), Positives = 189/321 (58%)

Query:    38 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 97
             S K   ELE+K+VH VYD IA HFSSTR + WP++  FL +LPSGS+V D GCGNGKYLG
Sbjct:   328 SSKEALELEQKHVHHVYDEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKYLG 387

Query:    98 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 157
             +N + + +GCD S +L+ IC +R  + LV DA+ +P RS   DA ISIAV+HH +T  RR
Sbjct:   388 INKELYMIGCDRSRNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAERR 447

Query:   158 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 217
              +A++E+ R+++ G   LI VWA+EQE +   +K+    +      I  G  +    SA 
Sbjct:   448 VEALQEIARLLRSGGQALIYVWAMEQEYRDQKSKYLKGNR------ISQGD-KGELNSAT 500

Query:   218 TLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDS--VISQDVKIITNQ---- 271
             ++E +    +   E   ++P  SV      S + T   E  S  V++ ++ I TN+    
Sbjct:   501 SMEQL--LVNQMPEGVSEDPGLSV-----HSSNNTKDEECKSRKVLNSELPIHTNRTCFH 553

Query:   272 -QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDI 330
              Q+  VPWHL   + +  G       +GLA+  D +   V++RYYHVFC+GELE     +
Sbjct:   554 SQDVLVPWHL---KGK-PGKDKAVEQSGLARCPDPRP--VFHRYYHVFCNGELEASCQAV 607

Query:   331 DNAVVVDRFFDKSNWCIVLQR 351
              +  ++  F+D+ NWC+VLQ+
Sbjct:   608 GDVSILQSFYDQGNWCVVLQK 628

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0016300 "tRNA (uracil) methyltransferase activity" evidence=ISO

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0030488 "tRNA methylation" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1P0F6 ALKBH8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 121/309 (39%), Positives = 175/309 (56%)

Query:    44 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 103
             ELE++YVH+VY+ IA HFSSTR + WP+V  FL SLP GS+V D GCGNGKYLG+N D +
Sbjct:   375 ELEQQYVHKVYEEIATHFSSTRHSPWPRVVEFLRSLPEGSIVADVGCGNGKYLGINRDLY 434

Query:   104 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 163
              VGCD S +L+ IC ++  +  V DA+++P RS   DA ISIAV+HH ST  RR  AI E
Sbjct:   435 MVGCDRSKNLVDICGEKDCQAFVCDALSVPIRSGSCDACISIAVIHHFSTAERRLAAIRE 494

Query:   164 LVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIP 223
             L R++K G   LI VWA+EQE K+  +K       Y++E  G       S S  T + + 
Sbjct:   495 LARLLKPGGTALIYVWAMEQEYKNQKSK-------YLKEKHGSKDKEEES-STGTSQRLL 546

Query:   224 ETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYH 283
             + + +    QG      + D   +         D  +     +   + Q+  VPWHL   
Sbjct:   547 DDQKHDRSSQGSACSDRLLDDSEDKGCAAKPVADSRLPVHTNRTSFHSQDMLVPWHL--- 603

Query:   284 RAEVSGASACALANGLAK-KDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDK 342
             +  +    A      LA  K+ ++ + V++RYYHVF +GELE     +D   ++  ++D+
Sbjct:   604 KGGIKKKGAVVDEASLAGCKESQELSPVFHRYYHVFREGELEAACRSLDCVRILKNYYDQ 663

Query:   343 SNWCIVLQR 351
              NWC+VL++
Sbjct:   664 GNWCVVLEK 672

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0016300 "tRNA (uracil) methyltransferase activity" evidence=IEA

UNIPROTKB|I3LA93 ALKBH8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 122/315 (38%), Positives = 177/315 (56%)

Query:    40 KSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLN 99
             K   +LE++YVHRVY+ IA HFSSTR   WP +  FL  LPSGSLV D GCGNGKYLG+N
Sbjct:   365 KEASQLEQEYVHRVYEEIAGHFSSTRHTPWPHIVAFLKDLPSGSLVADIGCGNGKYLGIN 424

Query:   100 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 159
              +   +GCD S +L+ IC +R ++ +V DA+++P RS   DA +SIAV+HH +T  RR  
Sbjct:   425 KELHMIGCDHSQNLVDICRERQYQAIVCDALSVPIRSGSCDACLSIAVIHHFATAERRVA 484

Query:   160 AIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTL 219
             A++ELVR+++ G   LI VWA+EQE K   +K+        E  I  G  + +  S+ T 
Sbjct:   485 ALQELVRLLRPGGKALIYVWAMEQEYKKKKSKYLR------ENRISQG--KKKEISSHT- 535

Query:   220 ESIPETEDNGSEEQGKEPKQ-SVPDKL-WESISLTSQSEDDSVISQDVKIIT-NQQEYFV 276
               + E       E G +    SVP    ++     S+   +S +       + + Q+  V
Sbjct:   536 -PVEELLVKHMPEVGNQDAACSVPSNNDFQEGGCNSRKVTNSKLPIHTNRTSFHSQDLLV 594

Query:   277 PWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVV 336
             PWHL  +  +        L   L   D   G V++ RYYHVFC+GELE     + N  ++
Sbjct:   595 PWHLKGNPGKDKAVEP--LCGPLGSHDS--GPVLH-RYYHVFCEGELEAACQTLSNVSIL 649

Query:   337 DRFFDKSNWCIVLQR 351
               ++D+ NWC++LQ+
Sbjct:   650 QSYYDQGNWCVILQK 664

GO:0016300 "tRNA (uracil) methyltransferase activity" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|A1A4L5 ALKBH8 "Alkylated DNA repair protein alkB homolog 8" [Bos taurus (taxid:9913)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 118/316 (37%), Positives = 173/316 (54%)

Query:    38 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 97
             S K   +LE+ YVHRVY+ IA HFSSTR   WP +  FL +LPSGSLV D GCGNGKYLG
Sbjct:   363 SDKEALQLEQDYVHRVYEEIARHFSSTRHTPWPHIVEFLKALPSGSLVADIGCGNGKYLG 422

Query:    98 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 157
             +N + + +GCD S +L+ IC +R ++  V DA+ +P RS   DA ISIAV+HH +T  RR
Sbjct:   423 INNELYMIGCDHSQNLVDICRERQYQAFVCDALAVPIRSGSCDACISIAVIHHFATAERR 482

Query:   158 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEE-WIGPGSPRVRSPSA 216
               A++ELVR+++ G   LI VWA+EQE       +     KY+ E     G     S  A
Sbjct:   483 VAALQELVRLLRPGGKALIYVWAMEQE-------YNKKKSKYLRENRTSQGMKEEISNDA 535

Query:   217 RTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIIT-NQQEYF 275
                E + +   N   +       S+ D  ++     S++  +S +       + + Q+  
Sbjct:   536 SVQELLVKQLPNVGNQDSAHSVSSIND--FQDGGCNSKNVANSKLPIHTNRTSFHSQDLL 593

Query:   276 VPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVV 335
             VPWH   +  +            L  +D      V++RYYHVFC+GELE     ++N  +
Sbjct:   594 VPWHFKGNPGKDKRVEPFG---PLGSRDP---GPVFHRYYHVFCEGELEAACRTLNNISI 647

Query:   336 VDRFFDKSNWCIVLQR 351
             +  ++D+ NWC++LQ+
Sbjct:   648 LQSYYDQGNWCVILQK 663

GO:0016300 "tRNA (uracil) methyltransferase activity" evidence=ISS

GO:0030488 "tRNA methylation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2REE7 ALKBH8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 123/320 (38%), Positives = 171/320 (53%)

Query:    38 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 97
             S +   +LE+ YVHRVY+ IA HFSSTR   WP+V  FL SLP GSLV D GCGNGKYLG
Sbjct:   376 SAREASQLEQDYVHRVYEEIAEHFSSTRHTPWPRVVEFLKSLPCGSLVADVGCGNGKYLG 435

Query:    98 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 157
             +N + + +GCD S  L+ IC +R  + LV DA+ +P  S   DA ISIAV+HH ST  RR
Sbjct:   436 VNKELYMIGCDRSQKLVDICRERCFQALVCDALAVPLCSGSCDACISIAVIHHFSTAERR 495

Query:   158 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEE-WIGPGSPRVRSPSA 216
               A++ELVR+++ G   L+ VWA+EQE       +     KY+ E  I  G     S   
Sbjct:   496 VAALQELVRLLRPGGQALVYVWAMEQE-------YNKKKSKYLRENRISQGKEEGTSSDT 548

Query:   217 RTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQ----- 271
                E + E   N      +    SV D L E        +  +V +  + + TN+     
Sbjct:   549 AMPELLVEQVPNVGSRDSECCVSSVTD-LPEG-----GHKARTVTNAKLPVHTNRTSFPS 602

Query:   272 QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDID 331
             Q+  VPWH   H+             G        G V ++RYYHVFC+GELE     ++
Sbjct:   603 QDLLVPWH---HQGNPGEGKP-----GHPAGAHDPGPV-FHRYYHVFCEGELEATCQTLN 653

Query:   332 NAVVVDRFFDKSNWCIVLQR 351
             +  ++  ++D+ NWC++LQ+
Sbjct:   654 SVSILQSYYDQGNWCVILQK 673

GO:0016300 "tRNA (uracil) methyltransferase activity" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q96BT7 ALKBH8 "Alkylated DNA repair protein alkB homolog 8" [Homo sapiens (taxid:9606)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 123/324 (37%), Positives = 176/324 (54%)

Query:    38 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 97
             S K    LE++YVH+VY+ IA HFSSTR   WP +  FL +LPSGS+V D GCGNGKYLG
Sbjct:   363 SDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLG 422

Query:    98 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 157
             +N + + +GCD S +L+ IC +R  +  V DA+ +P RS   DA ISIAV+HH +T  RR
Sbjct:   423 INKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERR 482

Query:   158 KKAIEELVRVVKKGSLVLITVWAVEQE---DKSLVTKWTPLTQKYVEEWIGPGS------ 208
               A++E+VR+++ G   LI VWA+EQE    KS   +    +Q   EE     S      
Sbjct:   483 VAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSVQRSLV 542

Query:   209 PRVRSPSAR-TLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKI 267
              ++R   +R +  S+P   D  S+E G   +Q    KL   ++ TS        SQDV  
Sbjct:   543 EQMRDMGSRDSASSVPRIND--SQEGGCNSRQVSNSKLPVHVNRTS------FYSQDV-- 592

Query:   268 ITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLA 327
                     VPWHL   +              +  +D      V++RYYHVF +GELE   
Sbjct:   593 -------LVPWHL---KGNPDKGKPVEPFGPIGSQDPSP---VFHRYYHVFREGELEGAC 639

Query:   328 SDIDNAVVVDRFFDKSNWCIVLQR 351
               + +  ++  ++D+ NWC++LQ+
Sbjct:   640 RTVSDVRILQSYYDQGNWCVILQK 663

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016300 "tRNA (uracil) methyltransferase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0030488 "tRNA methylation" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|Q95K79 ALKBH8 "Alkylated DNA repair protein alkB homolog 8" [Macaca fascicularis (taxid:9541)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 120/318 (37%), Positives = 175/318 (55%)

Query:    38 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 97
             S +    LE++YVH+VY+ IA HFSSTR   WP +  FL +LPSGS+V D GCGNGKYLG
Sbjct:   363 SDEEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLG 422

Query:    98 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 157
             +N + + VGCD S +L+ IC +R  +  V DA+ +P RS   DA ISIAV+HH +T  RR
Sbjct:   423 VNKELYMVGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERR 482

Query:   158 KKAIEELVRVVKKGSLVLITVWAVEQE---DKSLVTKWTPLTQKYVEEWIGPGSPRVRSP 214
               A++E+VR+++ G   LI VWA+EQE    KS   K    +Q   EE     S + RS 
Sbjct:   483 VAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLKGNRNSQGKKEEMNSDTSVQ-RS- 540

Query:   215 SARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIIT-NQQE 273
                 +E +P   D GS +      + + D   +     S+   +S +   V   +   Q+
Sbjct:   541 ---LVEQMP---DMGSRDSASSVPR-INDS--QEGGCNSRQVSNSKLPIHVNRTSFYSQD 591

Query:   274 YFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNA 333
               VPWHL   +              +  +D      V++RYYHVF +GELE L   + + 
Sbjct:   592 MLVPWHL---KGNPDKGKPVEPFGPIGSQDPSP---VFHRYYHVFREGELEALCRTVSDV 645

Query:   334 VVVDRFFDKSNWCIVLQR 351
              ++  ++D+ NWC++LQ+
Sbjct:   646 RILQSYYDQGNWCVILQK 663

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0016300 "tRNA (uracil) methyltransferase activity" evidence=ISS

GO:0030488 "tRNA methylation" evidence=ISS

ZFIN|ZDB-GENE-030131-4851 zgc:73340 "zgc:73340" [Danio rerio (taxid:7955)]

 Score = 387 (141.3 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
 Identities = 70/160 (43%), Positives = 106/160 (66%)

Query:    40 KSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLN 99
             ++  +LE+++VH VY+ IAP+F+ +R+  WPKV  FL     GS+V D GCGNGKYL +N
Sbjct:     3 EAASQLEREHVHSVYERIAPYFNDSRYKAWPKVKQFLLEQEPGSIVADIGCGNGKYLHIN 62

Query:   100 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 159
              + F +GCD+   L++   ++GHEV + D + LPYR    DA +SIAV+HH+ST+ RR +
Sbjct:    63 EEIFKLGCDVCRPLVESAWNKGHEVQICDGLRLPYRDACFDAVLSIAVIHHMSTKERRIR 122

Query:   160 AIEELVRVVKKGSLVLITVWAVEQ-----EDKSLVTKWTP 194
             AI+E+ R ++ G  ++I VWA+EQ     E + +   W P
Sbjct:   123 AIKEMARTLRVGGRIMIYVWAMEQKRRKFEKQDIFVPWNP 162

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.II.1674.1	hypothetical protein (369 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.III.1103.1	hypothetical protein (344 aa)		•					•		0.597
	gw1.V.3068.1	hypothetical protein (353 aa)					•		•		0.446
	gw1.II.1559.1	hypothetical protein (115 aa)				•	•		•		0.410

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	8e-20
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	3e-12
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-10
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	4e-10
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	4e-10
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	1e-09
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	3e-08
PRK11088	272	PRK11088, rrmA, 23S rRNA methyltransferase A; Prov	4e-07
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	1e-06
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	2e-06
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	3e-05
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	1e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-04
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	1e-04
TIGR02081	194	TIGR02081, metW, methionine biosynthesis protein M	2e-04
PRK00121	202	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransfe	3e-04
TIGR01177	329	TIGR01177, TIGR01177, TIGR01177 family protein	3e-04
TIGR00091	194	TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methylt	0.001
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	0.001
pfam07021	193	pfam07021, MetW, Methionine biosynthesis protein M	0.001
PRK15068	322	PRK15068, PRK15068, tRNA mo(5)U34 methyltransferas	0.004
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	0.004

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 82.7 bits (205), Expect = 8e-20
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 86  LDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDA 141
           LD GCG G   + L         G D+SP ++ +   R   + +V DA +LP+  +  D 
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDV 60

Query: 142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 176
            +S  VLHHL      ++A+ E+ RV+K G  ++I
Sbjct: 61  VVSSLVLHHL---PDPERALREIARVLKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 47/208 (22%), Positives = 78/208 (37%), Gaps = 37/208 (17%)

Query: 47  KKYVHRVYDAIAPHFSST----RFA---KWPKVATFLNSLPSGSLVLDAGCGNG----KY 95
           ++ V +V+D +A  +        F     W +    L  +  G  VLD  CG G      
Sbjct: 10  QEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLL 69

Query: 96  LGLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 148
                    VG DIS S++++  ++         E +V DA NLP+  +  DA      L
Sbjct: 70  AKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129

Query: 149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTP------LTQKYVEE 202
            ++   +   KA++E+ RV+K G  +L+        + S                KYV  
Sbjct: 130 RNV---TDIDKALKEMYRVLKPGGRLLVL-------EFSKPDNPVLRKAYILYYFKYVLP 179

Query: 203 WIG---PGSPRVRSPSARTLESIPETED 227
            IG             A ++   P+ E+
Sbjct: 180 LIGKLVAKDAEAYEYLAESIRRFPDQEE 207

Length = 238

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 85  VLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKICVDRGH-------EVLVADAVNLPY 134
           VLD GCG G     L   P     G DISP  +++             EVL  DA  LP 
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61

Query: 135 RSD--FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181
            +D  F D  IS   LHHL       + +EE  R++K G ++++T+   
Sbjct: 62  EADESF-DVIISDPPLHHL--VEDLARFLEEARRLLKPGGVLVLTLVLA 107

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 15/98 (15%)

Query: 86  LDAGCGNG----KYLGLNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFG 139
           LD GCG G      L   P   + G DISP+ ++   +R     +L A  V L       
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 140 ------DAAISIAVLHHLSTESRRKKAIEELVRVVKKG 171
                 D  ++  VLHHL+     +  +  L R++K G
Sbjct: 61  LDPGSFDVVVASNVLHHLAD---PRAVLRNLRRLLKPG 95

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 82  GSLVLDAGCGNG---KYLG--LNPDCFFVGCDISPSLIKICVDR--GHEVLV----ADAV 130
           G  VLD GCG G   + L   + P+   VG D S +++ +  +R  G    V     DA 
Sbjct: 20  GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD 79

Query: 131 NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVK-KGSLVL 175
            LP+     DA  S  VL HL       +A+ E+ RV++  G +V+
Sbjct: 80  GLPFPDGSFDAVRSDRVLQHLED---PARALAEIARVLRPGGRVVV 122

Length = 241

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 24/145 (16%)

Query: 81  SGSLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDRGH---------EVL 125
           SG  VLD GCG G YL       L P    VG DIS   I+    + +         E +
Sbjct: 3   SGIKVLDLGCGTG-YLTFILAEKLGPGAEVVGIDISEEAIE--KAKENAKKLGYENVEFI 59

Query: 126 VADAVNLP---YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182
             D   LP      +  D  IS  VL+HL       K +EE++RV+K G +++++   + 
Sbjct: 60  QGDIEELPQLQLEDNSFDVVISNEVLNHL---PDPDKVLEEIIRVLKPGGVLIVSDPVLL 116

Query: 183 QEDKSLVTKWTPLTQKYVEEWIGPG 207
            E  +L+     L    +E  IG  
Sbjct: 117 SELPALLEDLERLYAGVLEGAIGKK 141

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 53.7 bits (126), Expect = 3e-08
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 18/123 (14%)

Query: 72  VATFLNSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDRGH----- 122
           V   L  LP G  VLD GCG G+   L        + VG D+SP ++ +   R       
Sbjct: 39  VLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG 98

Query: 123 --EVLVADAVNLPYRSDFG---DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177
             + +VADA+      +     D  IS+ VLH L       KA+ EL+RV+K G  ++++
Sbjct: 99  LVDFVVADALGGVLPFEDSASFDLVISLLVLHLL----PPAKALRELLRVLKPGGRLVLS 154

Query: 178 VWA 180
              
Sbjct: 155 DLL 157

Length = 257

>gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 37/103 (35%), Positives = 43/103 (41%), Gaps = 20/103 (19%)

Query: 85  VLDAGCGNGKY-------LGLNPDCFFVGCDISPSLIKICVDRGHEV--LVADAVNLPYR 135
           +LD GCG G Y       L         G DIS   IK    R  +V   VA +  LP+ 
Sbjct: 89  LLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA 148

Query: 136 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178
               DA I I             KA EEL RVVK G  ++ITV
Sbjct: 149 DQSLDAIIRIYA---------PCKA-EELARVVKPGG-IVITV 180

Length = 272

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 39/155 (25%)

Query: 50  VHRVYDAIAPHFSST---------RFAKWPKVA-TFLNSLPSGSLVLDAGCGNGKYLGL- 98
           V  ++D+IAP +            R   W +    +L   P G  VLD  CG G      
Sbjct: 13  VAEMFDSIAPKYDLMNDLLSFGLHR--VWRRKTIKWLGVRP-GDKVLDLACGTGDLAIAL 69

Query: 99  ----NPDCFFVGCDISPSLIKICVDRGH--------EVLVADAVNLPYRSDFGDAAISIA 146
                     VG D S  ++ +  ++          E +  DA  LP+  +  DA ++IA
Sbjct: 70  AKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDA-VTIA 128

Query: 147 -----VLHHLSTESRRKKAIEELVRVVKKGSLVLI 176
                V           KA+ E+ RV+K G  ++I
Sbjct: 129 FGLRNVPD-------IDKALREMYRVLKPGGRLVI 156

Length = 239

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 11/97 (11%)

Query: 85  VLDAGCGNGKYLGLNPDCF---FVGCDISPSLIKICVDRG------HEVLVADAVNLPYR 135
           +LD GCG G+ L            G DIS   +++  +R          +VADA +LP+ 
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPFE 60

Query: 136 SDFGDAAI-SIAVLHHLSTESRRKKAIEELVRVVKKG 171
               D  I +   L +LS +  R   + E  R+++ G
Sbjct: 61  EGSFDLVICAGLSLDYLSPKQLR-ALLREAARLLRPG 96

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 24/146 (16%)

Query: 50  VHRVYDAIAPH-------FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG-------KY 95
           V  ++D IAP         S      W + A  L  +  G  VLD  CG G       K 
Sbjct: 1   VQEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKS 60

Query: 96  LGLNPDCFFVGCDISPSLIKICVDRGH-----EVLVADAVNLPYRSDFGDAAISIAVLHH 150
                     G D S  ++++   +       E + ADA  LP+  +  DA ++IA    
Sbjct: 61  APDRGKV--TGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDA-VTIA--FG 115

Query: 151 LSTESRRKKAIEELVRVVKKGSLVLI 176
           L   +  +KA+ E+ RV+K G  ++I
Sbjct: 116 LRNVTDIQKALREMYRVLKPGGRLVI 141

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 30/157 (19%)

Query: 72  VATFLNSLPSGSLVLDAGCGNGKYL------GLNPDCFFVGCDISPSLIKICVDRGHEVL 125
           +A  L  L  G  VLD GCG G  L      G +      G D SP+ + I         
Sbjct: 13  LARLLPRLKPGGRVLDIGCGTGILLRLLRERGFD----VTGVDPSPAAVLI-------FS 61

Query: 126 VADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 185
           + DA +    +   D   +  VL HL         +++L  ++K G ++LI+    + + 
Sbjct: 62  LFDAPDPAVLAGKYDLITAFEVLEHLPD---PPALLQQLRELLKPGGVLLISTPLADDDA 118

Query: 186 KSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESI 222
           + L   W          ++ P +  +   S  +L+ +
Sbjct: 119 R-LFANWH---------YLRPRNTHISFYSEESLKRL 145

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 17/108 (15%)

Query: 81  SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKIC-------VDRGHEVLVADA 129
            G+ VLD GCG G        L P     G D+SP ++++        +      +  DA
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60

Query: 130 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177
            +     +  DA         L       + ++ L  ++K G  +++ 
Sbjct: 61  PDALDLLEGFDAVFIGGGGGDL------LELLDALASLLKPGGRLVLN 102

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 20/140 (14%)

Query: 53  VYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCG--------------NGKYLGL 98
           VYD +    S  +   W ++A   +    G  VLD  CG              +GK +GL
Sbjct: 45  VYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGL 104

Query: 99  N--PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 156
           +   +   V         K C  +  E +  DA +LP+   + DA   I + + L     
Sbjct: 105 DFSSEQLAVAASRQELKAKSCY-KNIEWIEGDATDLPFDDCYFDA---ITMGYGLRNVVD 160

Query: 157 RKKAIEELVRVVKKGSLVLI 176
           R KA++E+ RV+K GS V I
Sbjct: 161 RLKAMQEMYRVLKPGSRVSI 180

Length = 261

>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 70  PKVATFLNSLPSGSLVLDAGCGNGKYLGLNPD---CFFVGCDISPSLIKICVDRGHEVLV 126
             + + LN +P GS VLD GCG+G+ L L  D       G +I    +  CV RG  V+ 
Sbjct: 2   VDLESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQ 61

Query: 127 ADA-VNLPYRSDFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKG 171
            D    L     F D +    +L   L      ++ ++E++RV +  
Sbjct: 62  GDLDEGLEA---FPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHA 105

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized [Amino acid biosynthesis, Aspartate family]. Length = 194

>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 21/104 (20%)

Query: 47  KKYVHR-------VYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL--- 96
           + +V R          AI   +     A       F N  P   + L+ G G G++L   
Sbjct: 2   RSFVRRRGRLTKGQQRAIEELWPRLSPAPLDWAELFGNDAP---IHLEIGFGKGEFLVEM 58

Query: 97  -GLNPDCFFVGCDISPSLIKICVDRGHE-------VLVADAVNL 132
              NPD  F+G ++    +   + +  E       +L  DAV +
Sbjct: 59  AKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEV 102

Length = 202

>gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 30/125 (24%), Positives = 42/125 (33%), Gaps = 28/125 (22%)

Query: 70  PKVATFLNSLP---SGSLVLDAGCGNGKYL------GLNPDCFFVGCDISPSLIKIC--- 117
           PK+A  + +L     G  VLD  CG G +L      G       +GCDI   ++      
Sbjct: 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKV----IGCDIDWKMVAGARIN 223

Query: 118 ----VDRGHEVLVADAVNLPYRSDFGDAA-------ISIAVLHHLSTESRRKKAIEELVR 166
                     V   DA  LP  S+  DA         S              +++EE   
Sbjct: 224 LEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYE-RSLEEFHE 282

Query: 167 VVKKG 171
           V+K  
Sbjct: 283 VLKSE 287

This family is found exclusively in the Archaea [Hypothetical proteins, Conserved]. Length = 329

>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 13/75 (17%)

Query: 70  PKVATFLNSLPSGSLVLDAGCGNGKYL-GL---NPDCFFVGCDISPSLIKICVDRGHE-- 123
           P  AT   +     L L+ GCG G++L  +   NPD  F+G +I   ++    ++ ++  
Sbjct: 7   PDFATVFGN--KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG 64

Query: 124 -----VLVADAVNLP 133
                VL  DA  L 
Sbjct: 65  LKNLHVLCGDANELL 79

This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria. It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In E. coli, this protein flanks the DNA repair protein MutY, also called micA [Protein synthesis, tRNA and rRNA base modification]. Length = 194

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 19/115 (16%)

Query: 82  GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKIC--------VDRGHEVLVADA 129
           G  VLD G G+G +L       PD   VG ++ P    +         +     V+V DA
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 130 VNLPYRSD------FGDAAISIAVLHHLSTESRRKKAIEELVRVVK-KGSLVLIT 177
             L    D       G+                  + +   +R++K  G LV+IT
Sbjct: 61  RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVIT 115

This family contains methyltransferase domains. Length = 117

>gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 14/103 (13%)

Query: 76  LNSLPSGSLVLDAGCGNGKYLGLNPDCFFV---GCDISPSLIKICVDRGHEVLVADA--- 129
              +P GS VLD GCG+G  L L  +   V   G ++  + +  CV +G  V+  DA   
Sbjct: 8   ARLIPPGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVAKGLSVIQGDADKG 67

Query: 130 -VNLPYRSDFGDAAISIAVLHHLSTESRRKKAI-EELVRVVKK 170
             + P      D +    +L      +R  + + +EL+R+ ++
Sbjct: 68  LEHFP------DKSFDYVILSQTLQATRNPREVLDELLRIGRR 104

This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalyzed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalyzed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. Length = 193

>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 68  KWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISP 111
           KW +V   L+ L  G  VLD GCGNG +    LG       VG D S 
Sbjct: 110 KWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQ 155

Length = 322

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 22/151 (14%)

Query: 45  LEKKYVHRVYDAIAPHF-------SSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL- 96
           L+++ V  V+ ++A  +       S      W         +  G+  LD   G G +  
Sbjct: 4   LKEQRVGDVFSSVASKYDLMNDVISFGIHRLWKDFTMKCMGVKRGNKFLDVAGGTGDWTF 63

Query: 97  ----GLNPDCFFVGCDISPSLIKICVDRGH-------EVLVADAVNLPYRSDFGDAAISI 145
                       VG DI+ +++K    +         E L  +A  LP+  D  D    +
Sbjct: 64  GLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEELPFEDDSFD---IV 120

Query: 146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLI 176
            +   L       K ++E  RV+K G  V+ 
Sbjct: 121 TISFGLRNFPDYLKVLKEAFRVLKPGGRVVC 151

Length = 233

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
KOG1331	293	consensus Predicted methyltransferase [General fun	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.89
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.87
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.83
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.8
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.75
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.74
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.74
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.74
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.73
PRK05785	226	hypothetical protein; Provisional	99.73
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.72
PLN02244	340	tocopherol O-methyltransferase	99.71
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.7
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.68
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.65
KOG4300	252	consensus Predicted methyltransferase [General fun	99.65
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.64
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.64
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.62
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.62
PRK11207	197	tellurite resistance protein TehB; Provisional	99.6
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.6
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.6
PLN02490	340	MPBQ/MSBQ methyltransferase	99.6
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.59
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.59
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.58
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.57
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.56
PLN02336	475	phosphoethanolamine N-methyltransferase	99.56
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.56
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.55
PRK12335	287	tellurite resistance protein TehB; Provisional	99.55
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.54
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.53
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.53
PRK06202	232	hypothetical protein; Provisional	99.53
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.53
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.52
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.51
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.5
PRK06922	677	hypothetical protein; Provisional	99.5
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.49
PRK08317	241	hypothetical protein; Provisional	99.49
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.48
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.48
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.48
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.47
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.47
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.46
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.46
TIGR03438	301	probable methyltransferase. This model represents	99.46
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.45
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.45
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.45
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.43
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.42
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.42
PLN02336	475	phosphoethanolamine N-methyltransferase	99.4
KOG3010	261	consensus Methyltransferase [General function pred	99.38
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.38
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.38
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.35
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.35
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.35
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.34
PLN03075	296	nicotianamine synthase; Provisional	99.32
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.32
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.32
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.31
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.3
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.29
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.29
KOG2361	264	consensus Predicted methyltransferase [General fun	99.28
TIGR00438	188	rrmJ cell division protein FtsJ.	99.28
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.27
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.27
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.26
PRK04266	226	fibrillarin; Provisional	99.26
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.23
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.22
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.21
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.2
KOG1271	227	consensus Methyltransferases [General function pre	99.18
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.17
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.16
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.16
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.15
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.13
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.12
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.12
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.11
PHA03411	279	putative methyltransferase; Provisional	99.11
PRK07402	196	precorrin-6B methylase; Provisional	99.1
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.09
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.09
PRK14967	223	putative methyltransferase; Provisional	99.07
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.06
PRK14968	188	putative methyltransferase; Provisional	99.06
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.05
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.05
PTZ00146	293	fibrillarin; Provisional	99.04
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.02
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.0
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.99
PRK04457	262	spermidine synthase; Provisional	98.99
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.99
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.97
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.96
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.96
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.96
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.95
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.95
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.94
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.93
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.93
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.92
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.91
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.91
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.9
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.88
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.87
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.87
PHA03412	241	putative methyltransferase; Provisional	98.86
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.86
COG4123	248	Predicted O-methyltransferase [General function pr	98.84
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.83
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.82
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.81
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.81
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.77
PRK00811	283	spermidine synthase; Provisional	98.77
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.77
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.75
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.75
KOG2940	325	consensus Predicted methyltransferase [General fun	98.75
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.73
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.71
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.71
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.7
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.68
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.61
PRK01581	374	speE spermidine synthase; Validated	98.6
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.57
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.57
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.56
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.56
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.56
PLN02366	308	spermidine synthase	98.54
PRK03612	521	spermidine synthase; Provisional	98.54
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.52
KOG2899	288	consensus Predicted methyltransferase [General fun	98.49
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.48
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.48
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.47
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.47
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.44
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.43
PRK04148	134	hypothetical protein; Provisional	98.43
PLN02476	278	O-methyltransferase	98.41
COG2890	280	HemK Methylase of polypeptide chain release factor	98.4
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.38
COG4122	219	Predicted O-methyltransferase [General function pr	98.37
COG2521	287	Predicted archaeal methyltransferase [General func	98.35
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.34
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.33
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.32
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.32
PLN02672	1082	methionine S-methyltransferase	98.29
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.27
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.26
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.25
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.25
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.24
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.24
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.21
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.21
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.2
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.18
KOG2904	328	consensus Predicted methyltransferase [General fun	98.15
PLN02823	336	spermine synthase	98.12
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.12
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.12
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.12
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.11
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.11
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.1
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.09
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.07
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.05
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.04
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.02
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.0
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.98
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.93
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.91
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.86
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.82
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.81
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.77
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.74
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.73
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.73
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.71
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.69
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.68
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.67
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.66
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.61
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.57
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.54
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.48
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.47
PRK00536	262	speE spermidine synthase; Provisional	97.46
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.45
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.44
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.42
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.42
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.37
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.36
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.3
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.29
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.28
COG2520	341	Predicted methyltransferase [General function pred	97.19
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.18
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.17
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.15
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.02
COG4076	252	Predicted RNA methylase [General function predicti	97.01
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.97
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	96.92
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.88
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.85
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.77
PF13679	141	Methyltransf_32: Methyltransferase domain	96.77
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.68
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.66
COG0742	187	N6-adenine-specific methylase [DNA replication, re	96.6
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.51
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.49
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.42
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.4
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.22
COG2265	432	TrmA SAM-dependent methyltransferases related to t	96.16
KOG3115	249	consensus Methyltransferase-like protein [General	96.15
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	96.1
COG4798	238	Predicted methyltransferase [General function pred	96.09
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.05
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	95.96
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.92
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.84
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	95.73
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	95.65
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	95.45
PLN02668	386	indole-3-acetate carboxyl methyltransferase	95.1
KOG2671	421	consensus Putative RNA methylase [Replication, rec	94.93
COG3897	218	Predicted methyltransferase [General function pred	94.87
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.86
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	94.81
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	94.65
KOG2730	263	consensus Methylase [General function prediction o	94.59
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.33
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	94.23
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	93.99
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	93.9
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	93.86
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.8
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	93.65
COG4301	321	Uncharacterized conserved protein [Function unknow	93.5
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	93.45
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	93.41
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	93.16
PF03269	177	DUF268: Caenorhabditis protein of unknown function	92.99
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.86
COG0286	489	HsdM Type I restriction-modification system methyl	92.73
COG2384	226	Predicted SAM-dependent methyltransferase [General	92.66
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	92.3
KOG4058	199	consensus Uncharacterized conserved protein [Funct	92.29
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	91.84
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.7
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	91.32
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.22
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	90.95
KOG2920	282	consensus Predicted methyltransferase [General fun	90.65
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	90.56
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	90.45
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	90.09
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	89.9
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	89.0
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	88.66
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	88.35
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	88.28
PRK10742	250	putative methyltransferase; Provisional	88.14
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	88.0
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	87.21
PRK13699	227	putative methylase; Provisional	87.07
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	86.49
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	86.28
COG3129	292	Predicted SAM-dependent methyltransferase [General	85.76
PRK11524	284	putative methyltransferase; Provisional	85.64
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	85.55
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	85.31
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	85.31
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	85.11
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	84.95
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	84.88
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	84.76
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	84.59
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	84.42
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	84.39
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	84.39
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	84.37
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	83.7
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	83.6
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	83.49
PHA01634	156	hypothetical protein	83.43
PRK11524	284	putative methyltransferase; Provisional	82.92
PTZ00357	1072	methyltransferase; Provisional	82.39
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	80.81
TIGR00497	501	hsdM type I restriction system adenine methylase (	80.32
PRK13699	227	putative methylase; Provisional	80.06

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=100.00  E-value=3.8e-44  Score=326.34  Aligned_cols=283  Identities=38%  Similarity=0.659  Sum_probs=212.0

Q ss_pred             CChHHHHHHHHHHHHhhccccccccccChHHHHHHHhCCCCCCEEEEECCccccccccCCCcEEEEEeCCHHHHHHHHHc
Q 018606           41 STPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        41 ~~~~~e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      ....++++||+++|+.+|.+|+.+++.+|+.+..++...+.+..++|+|||+|+++...|.+.++|+|++..++..|++.
T Consensus         5 ~~~eleqeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~   84 (293)
T KOG1331|consen    5 QLTELEQEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRS   84 (293)
T ss_pred             hHHHHHHHHhHHHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-eEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccchhhccccccccHHh
Q 018606          121 GH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKY  199 (353)
Q Consensus       121 ~i-~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~~~~~~~~~~~~~~~  199 (353)
                      +. ....+|+.++|+++.+||.+++++++||+.+.+|+..+++++.|+|+|||..+|++|+.++........|.    .+
T Consensus        85 ~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~~~~~~s~~~----~~  160 (293)
T KOG1331|consen   85 GGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQHQSSSKSNYK----KG  160 (293)
T ss_pred             CCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhccCcccccchh----cc
Confidence            87 69999999999999999999999999999999999999999999999999999999999998776554443    22


Q ss_pred             HhhhhCCCCCcccCC-CCCccccccccccCCCcccCCCCCCCCCccccccccccccCCCCccccccccccCCcccceeec
Q 018606          200 VEEWIGPGSPRVRSP-SARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPW  278 (353)
Q Consensus       200 ~~~w~~~~~~~~~~~-~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qd~lvpW  278 (353)
                      ...|.....+-+... ...... ..+.....+.                .+.++    .-..+...+...+++||.++||
T Consensus       161 ~~~~~g~~~dv~~~~~~~~~~~-~~e~~~~~~~----------------~~~~~----~~~~~~l~~~p~~e~~~~~q~~  219 (293)
T KOG1331|consen  161 VEEVRGDEQDVLAAWGLQSEQD-RGETQLGNGM----------------SLKVK----NRNMAALKVIPPEEQQDVLQPW  219 (293)
T ss_pred             hhhccCCccceecccccccccc-cccccccCCC----------------ccccc----cccccccccCCchhhcchhccc
Confidence            222222111111000 000000 0000000000                01111    0112233455678999999999


Q ss_pred             ccCCCCcccccchhhhhhccccccCCCCCceeeeeeeecccccHHHHHhcccCCcEEEEccccCCCeEEEEEEc
Q 018606          279 HLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELERLASDIDNAVVVDRFFDKSNWCIVLQRT  352 (353)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ryyH~F~~gEL~~l~~~~~~~~v~~~~~d~~nwcvi~~k~  352 (353)
                      +-+......    -........+..++..+.+|+||||||++|||++||.++-+++|+.++||+||||||++|.
T Consensus       220 ~~~~~~~~~----~~~~De~~~~~~~~~~~~t~~RYYHvfregEL~~lv~~~~~~~l~S~~~e~gnwcvVaeK~  289 (293)
T KOG1331|consen  220 KEPIQAPKS----LPPNDEKSTESPSQLRESTFQRYYHVFREGELAELVESVVGLRLLSSGYERGNWCVVAEKK  289 (293)
T ss_pred             ccccccccc----cCCcchhcccchhhhcchhheeeeEecchHHHHHHHhhccceEeeeeccccCCeEEEEeec
Confidence            843321000    0000001111123445679999999999999999999886799999999999999999996

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.89  E-value=7.7e-23  Score=186.23  Aligned_cols=133  Identities=28%  Similarity=0.434  Sum_probs=117.2

Q ss_pred             HHHHHHHHHhhccccccc-------cccChHHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHH
Q 018606           47 KKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIK  115 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~-------~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~  115 (353)
                      ++.++++|+++++.||..       .+..|++.........+|.+|||||||||.++.    ..+.++|+|+|+|+.||+
T Consensus        10 ~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~   89 (238)
T COG2226          10 QEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLE   89 (238)
T ss_pred             HHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHH
Confidence            578999999999999863       367888766666566689999999999999763    244789999999999999


Q ss_pred             HHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          116 ICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       116 ~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .|+++       +++|+++|+++|||++++||+|.+...|+++++   +.++|+|++|+|||||++++..+...
T Consensus        90 ~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d---~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226          90 VAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD---IDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             HHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC---HHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            99998       377999999999999999999999999999998   78999999999999999999987754

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.87  E-value=2e-22  Score=184.57  Aligned_cols=135  Identities=29%  Similarity=0.550  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHhhccccccc-------cccChHHHHHHHhCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHH
Q 018606           46 EKKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSL  113 (353)
Q Consensus        46 e~~~v~~~yd~~a~~y~~~-------~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~  113 (353)
                      .++++.++|+++++.|+..       .+..|++...-+....+|.+|||+|||||.++.     ..+...|+|+|+|+.|
T Consensus         5 k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M   84 (233)
T PF01209_consen    5 KEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM   84 (233)
T ss_dssp             --------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence            4568999999999999873       356787644444467788999999999998753     2456799999999999


Q ss_pred             HHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          114 IKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       114 l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ++.|+++       +++++++|++++|+++++||+|++.+.|+.+++   +.++|+|++|+|||||+++|..+....
T Consensus        85 L~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile~~~p~  158 (233)
T PF01209_consen   85 LEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILEFSKPR  158 (233)
T ss_dssp             HHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred             HHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence            9999986       689999999999999999999999999999998   678999999999999999999887543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.83  E-value=3.8e-20  Score=172.62  Aligned_cols=134  Identities=28%  Similarity=0.405  Sum_probs=111.8

Q ss_pred             HHHHHHHHHhhccccccc-------cccChHHHHHHHhCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHH
Q 018606           47 KKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLI  114 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~-------~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l  114 (353)
                      .+.+.++|+.+|+.|+..       ....|++....+..+.++.+|||||||+|.++..     .+...|+|+|+|+.|+
T Consensus        32 ~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml  111 (261)
T PLN02233         32 ANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL  111 (261)
T ss_pred             HHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            457888999999999852       2345665544344677889999999999997532     3456999999999999


Q ss_pred             HHHHHc----------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          115 KICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       115 ~~a~~~----------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +.|+++          +++++++|+..+|+++++||+|++..++||+++   +..+++++.|+|||||++++.+|....
T Consensus       112 ~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d~~~~~  187 (261)
T PLN02233        112 AVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILDFNKST  187 (261)
T ss_pred             HHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCC---HHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence            999754          478999999999999999999999999999987   788999999999999999999987543

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.80  E-value=4.3e-19  Score=159.63  Aligned_cols=153  Identities=23%  Similarity=0.312  Sum_probs=127.4

Q ss_pred             cCCCCCCCCCCCCCChHHHHH-HHHHHHHhhccccccc-------cccChHHHHHHHhCCCCCCEEEEECCccccccc--
Q 018606           28 TGEDQRCSSSSIKSTPELEKK-YVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG--   97 (353)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~e~~-~v~~~yd~~a~~y~~~-------~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~--   97 (353)
                      .+....|+++++....+-+++ .|+.+|+.+|..|+-.       .++.|+.+..--.....+.++||++||||-.+-  
T Consensus        39 ~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFri  118 (296)
T KOG1540|consen   39 LSVASKCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRI  118 (296)
T ss_pred             cccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHH
Confidence            345678999999988777764 6899999999999762       367786654443445567899999999998642  


Q ss_pred             --c------CCCcEEEEEeCCHHHHHHHHHcC----------CeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHH
Q 018606           98 --L------NPDCFFVGCDISPSLIKICVDRG----------HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK  159 (353)
Q Consensus        98 --~------~~~~~v~gvD~S~~~l~~a~~~~----------i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~  159 (353)
                        .      ....+|+++|+++.||+.++++.          +.++.+|+++|||++++||+.++.+.|...++   +.+
T Consensus       119 l~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th---~~k  195 (296)
T KOG1540|consen  119 LRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH---IQK  195 (296)
T ss_pred             HHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC---HHH
Confidence              1      23479999999999999998872          78999999999999999999999999999998   789


Q ss_pred             HHHHHHhccccCcEEEEEEcCCCc
Q 018606          160 AIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       160 ~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +|+|++|+|||||++++..|+...
T Consensus       196 ~l~EAYRVLKpGGrf~cLeFskv~  219 (296)
T KOG1540|consen  196 ALREAYRVLKPGGRFSCLEFSKVE  219 (296)
T ss_pred             HHHHHHHhcCCCcEEEEEEccccc
Confidence            999999999999999999887654

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.75  E-value=1.3e-17  Score=159.49  Aligned_cols=98  Identities=20%  Similarity=0.247  Sum_probs=87.5

Q ss_pred             CCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           81 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      ++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++        ++.++++|+..+++.+++||+|++..+|+|
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            567999999999997542  5678999999999999999865        478899999999887889999999999999


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +.+   +..+++++.++|||||.+++.+++.
T Consensus       211 v~d---~~~~L~~l~r~LkPGG~liist~nr  238 (322)
T PLN02396        211 VAN---PAEFCKSLSALTIPNGATVLSTINR  238 (322)
T ss_pred             cCC---HHHHHHHHHHHcCCCcEEEEEECCc
Confidence            998   6789999999999999999998764

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.74  E-value=2.3e-17  Score=150.70  Aligned_cols=131  Identities=23%  Similarity=0.394  Sum_probs=107.8

Q ss_pred             HHHHHHHHHhhccccccc-------cccChHHHHHHHhCCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHH
Q 018606           47 KKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLI  114 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~-------~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l  114 (353)
                      .+.++.+|++++..|+..       .+..|+........+.++.+|||+|||+|.++.    . .++..|+|+|+|+.|+
T Consensus         4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~   83 (231)
T TIGR02752         4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML   83 (231)
T ss_pred             HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            568899999999999862       344455333333356678999999999999753    2 3567999999999999


Q ss_pred             HHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          115 KICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       115 ~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +.|+++       +++++.+|+..+++++++||+|++..+++|+++   +..+++++.++|+|||++++....
T Consensus        84 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~~  153 (231)
T TIGR02752        84 SVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLETS  153 (231)
T ss_pred             HHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEECC
Confidence            998875       478899999999888899999999999999988   678999999999999999987654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.74  E-value=6.6e-18  Score=131.49  Aligned_cols=88  Identities=34%  Similarity=0.577  Sum_probs=76.1

Q ss_pred             EEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHH
Q 018606           86 LDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK  158 (353)
Q Consensus        86 LDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~  158 (353)
                      ||+|||+|.++..   .++..|+|+|+++.+++.++++    ++.+..+|+..+|+++++||+|++..+++|+.+   +.
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~---~~   77 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED---PE   77 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH---HH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC---HH
Confidence            8999999997642   4688999999999999999997    456999999999999999999999999999944   78


Q ss_pred             HHHHHHHhccccCcEEEE
Q 018606          159 KAIEELVRVVKKGSLVLI  176 (353)
Q Consensus       159 ~~l~el~rvLkpgG~lli  176 (353)
                      .+++++.|+|||||+++|
T Consensus        78 ~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   78 AALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHcCcCeEEeC
Confidence            999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.74  E-value=7.7e-18  Score=144.21  Aligned_cols=114  Identities=30%  Similarity=0.440  Sum_probs=91.3

Q ss_pred             cccccChHHHHHHHh-CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCc
Q 018606           63 STRFAKWPKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFG  139 (353)
Q Consensus        63 ~~~~~~~~~~~~~l~-~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~f  139 (353)
                      ...+..+..+...+. ...++.+|||||||+|.++..  ..+.+++|+|+++.+++.   ........+....+.++++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~f   79 (161)
T PF13489_consen    3 RHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK---RNVVFDNFDAQDPPFPDGSF   79 (161)
T ss_dssp             -GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH---TTSEEEEEECHTHHCHSSSE
T ss_pred             hhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh---hhhhhhhhhhhhhhccccch
Confidence            334555665555444 478889999999999998753  345699999999999988   44555555555556678999


Q ss_pred             cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          140 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       140 D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      |+|+++.+|+|+++   +..+|+++.++|||||++++.++...
T Consensus        80 D~i~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   80 DLIICNDVLEHLPD---PEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             EEEEEESSGGGSSH---HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             hhHhhHHHHhhccc---HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            99999999999997   78999999999999999999998753

...

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.73  E-value=2.2e-17  Score=152.96  Aligned_cols=134  Identities=25%  Similarity=0.347  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHhhccccccccccChHHHH-HHHhCCC--CCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHH
Q 018606           45 LEKKYVHRVYDAIAPHFSSTRFAKWPKVA-TFLNSLP--SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD  119 (353)
Q Consensus        45 ~e~~~v~~~yd~~a~~y~~~~~~~~~~~~-~~l~~l~--~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~  119 (353)
                      ++++.+...|++.+..|+..... ...+. .++..++  ++.+|||+|||+|.++..  ..+..++|+|+|+.|++.|++
T Consensus         4 ~~k~~i~~~F~~aa~~Y~~~~~~-q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~   82 (251)
T PRK10258          4 VNKQAIAAAFGRAAAHYEQHAEL-QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQ   82 (251)
T ss_pred             cCHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHh
Confidence            34677888999999988753221 12222 2223332  467999999999987542  456899999999999999998


Q ss_pred             c--CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          120 R--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       120 ~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +  ...++++|+..+|+++++||+|++..+++|+.+   +..+|.++.++|+|||.++++++...
T Consensus        83 ~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d---~~~~l~~~~~~Lk~gG~l~~~~~~~~  144 (251)
T PRK10258         83 KDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGN---LSTALRELYRVVRPGGVVAFTTLVQG  144 (251)
T ss_pred             hCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCC---HHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            7  357899999999998899999999999999988   67899999999999999999988753

>PRK05785 hypothetical protein; Provisional

Probab=99.73  E-value=2.3e-17  Score=150.72  Aligned_cols=122  Identities=20%  Similarity=0.300  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHhhcccccccc-------ccChHH-HHHHHh-CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHH
Q 018606           46 EKKYVHRVYDAIAPHFSSTR-------FAKWPK-VATFLN-SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSL  113 (353)
Q Consensus        46 e~~~v~~~yd~~a~~y~~~~-------~~~~~~-~~~~l~-~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~  113 (353)
                      ..+.+.++|+.+|..|+...       ...|++ +...+. ...++.+|||||||||.++..   ..+..|+|+|+|++|
T Consensus         7 ~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~M   86 (226)
T PRK05785          7 TWEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENM   86 (226)
T ss_pred             cHHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHH
Confidence            45678899999999998632       234654 333333 335578999999999997542   115799999999999


Q ss_pred             HHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccC
Q 018606          114 IKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG  171 (353)
Q Consensus       114 l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpg  171 (353)
                      ++.|+++ ..++++|++.+|+++++||+|++..+|||+.+   +..+++++.|+|||.
T Consensus        87 l~~a~~~-~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d---~~~~l~e~~RvLkp~  140 (226)
T PRK05785         87 LKMNLVA-DDKVVGSFEALPFRDKSFDVVMSSFALHASDN---IEKVIAEFTRVSRKQ  140 (226)
T ss_pred             HHHHHhc-cceEEechhhCCCCCCCEEEEEecChhhccCC---HHHHHHHHHHHhcCc
Confidence            9999886 45789999999999999999999999999988   678999999999994

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.72  E-value=2.6e-17  Score=152.97  Aligned_cols=98  Identities=21%  Similarity=0.310  Sum_probs=87.3

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE  154 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~  154 (353)
                      ..++.+|||||||+|.++.    ..++..|+|+|+|+.|++.|++++++++++|+..++ ++++||+|++..++||+++ 
T Consensus        27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d-  104 (255)
T PRK14103         27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK-PKPDTDVVVSNAALQWVPE-  104 (255)
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-CCCCceEEEEehhhhhCCC-
Confidence            3567899999999999764    246789999999999999999999999999998875 4679999999999999987 


Q ss_pred             hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          155 SRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       155 e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                        +..++++++++|||||.+++.++.
T Consensus       105 --~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103        105 --HADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             --HHHHHHHHHHhCCCCcEEEEEcCC
Confidence              678999999999999999998765

>PLN02244 tocopherol O-methyltransferase

Probab=99.71  E-value=1.2e-16  Score=154.61  Aligned_cols=100  Identities=25%  Similarity=0.374  Sum_probs=88.6

Q ss_pred             CCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           80 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .++.+|||||||+|.++..   ..+..|+|+|+|+.|++.|+++        ++.++++|+..+|+++++||+|++..++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            5678999999999997542   2377999999999999988774        4789999999999999999999999999


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +|+++   +..+++++.|+|||||+++|.+|...
T Consensus       197 ~h~~d---~~~~l~e~~rvLkpGG~lvi~~~~~~  227 (340)
T PLN02244        197 EHMPD---KRKFVQELARVAAPGGRIIIVTWCHR  227 (340)
T ss_pred             hccCC---HHHHHHHHHHHcCCCcEEEEEEeccc
Confidence            99998   67899999999999999999988653

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.70  E-value=3.9e-17  Score=151.81  Aligned_cols=127  Identities=23%  Similarity=0.354  Sum_probs=100.6

Q ss_pred             HHHhhcccccccccc----------ChHHHHHHHhCC-CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHH
Q 018606           53 VYDAIAPHFSSTRFA----------KWPKVATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD  119 (353)
Q Consensus        53 ~yd~~a~~y~~~~~~----------~~~~~~~~l~~l-~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~  119 (353)
                      .||.++.+|+...|.          .|..+..++..+ .++.+|||+|||+|.++..  ..+..|+|+|+|+.|++.|++
T Consensus         5 ~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~   84 (255)
T PRK11036          5 NFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ   84 (255)
T ss_pred             ChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            466666666653332          344555566554 3457999999999997642  456899999999999999987


Q ss_pred             c--------CCeEEEeeCCCCC-CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          120 R--------GHEVLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       120 ~--------~i~~~~~D~~~l~-~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +        +++++++|+..++ +.+++||+|++..+++|+.+   +..++.++.++|||||++++.+++..
T Consensus        85 ~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~---~~~~l~~~~~~LkpgG~l~i~~~n~~  153 (255)
T PRK11036         85 AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVAD---PKSVLQTLWSVLRPGGALSLMFYNAN  153 (255)
T ss_pred             HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCC---HHHHHHHHHHHcCCCeEEEEEEECcc
Confidence            5        3678999988764 56789999999999999988   67899999999999999999988754

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.68  E-value=1.4e-16  Score=139.45  Aligned_cols=101  Identities=28%  Similarity=0.457  Sum_probs=87.6

Q ss_pred             HHhCCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-C-CCCCCCccEEEechhhh
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-L-PYRSDFGDAAISIAVLH  149 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l-~~~~~~fD~Vi~~~vl~  149 (353)
                      +..-++||++|||+|||.|.++..   ..++...|+|+++..+..|.++++.++++|+.. + .|++++||.||++.+|+
T Consensus         7 I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ   86 (193)
T PF07021_consen    7 IAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQ   86 (193)
T ss_pred             HHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence            334568999999999999998753   678999999999999999999999999999987 4 38899999999999999


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ++..   +..+|.||.|+   |...+++++++
T Consensus        87 ~~~~---P~~vL~EmlRV---gr~~IVsFPNF  112 (193)
T PF07021_consen   87 AVRR---PDEVLEEMLRV---GRRAIVSFPNF  112 (193)
T ss_pred             hHhH---HHHHHHHHHHh---cCeEEEEecCh
Confidence            9988   67899999776   55678887664

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.65  E-value=3.4e-16  Score=126.37  Aligned_cols=97  Identities=32%  Similarity=0.530  Sum_probs=81.0

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeC-CCCCCCCCCccEEEech-
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADA-VNLPYRSDFGDAAISIA-  146 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~-~~l~~~~~~fD~Vi~~~-  146 (353)
                      |+.+|||||||+|.++.    ..++.+|+|+|+|+.|++.|+++        +++++++|+ ..... .+.||+|++.. 
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~   79 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF   79 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence            57899999999999853    24899999999999999999886        689999999 33333 45699999999 


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +++++...+.+..+++++.+.|+|||+++|..
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            66666554457899999999999999999875

...

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.65  E-value=6.8e-16  Score=135.01  Aligned_cols=132  Identities=21%  Similarity=0.347  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHhhccccccccccChHHHHHHHhCCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-
Q 018606           45 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-  120 (353)
Q Consensus        45 ~e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~-  120 (353)
                      +.......+|++++..|...   .+..+..++..-.+ ..||+||||||.....   .|+.+|+++|+++.|-+++.++ 
T Consensus        44 ~p~~~ft~~yne~~~~ykre---lFs~i~~~~gk~~K-~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~  119 (252)
T KOG4300|consen   44 IPNSNFTSIYNEIADSYKRE---LFSGIYYFLGKSGK-GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSA  119 (252)
T ss_pred             cchhHHHHHHHHHHHHHHHH---HHhhhHHHhcccCc-cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHH
Confidence            34456677888888877321   12222233322222 3689999999998765   4788999999999999998776 


Q ss_pred             ------CCe-EEEeeCCCCC-CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          121 ------GHE-VLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       121 ------~i~-~~~~D~~~l~-~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                            .+. |+.++.+++| ++++++|+|++..+|....+   +.+.|.++.|+|||||++++..-...+
T Consensus       120 ~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~---~~k~L~e~~rlLRpgG~iifiEHva~~  187 (252)
T KOG4300|consen  120 AEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVED---PVKQLNEVRRLLRPGGRIIFIEHVAGE  187 (252)
T ss_pred             hhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCC---HHHHHHHHHHhcCCCcEEEEEeccccc
Confidence                  344 8999999999 88999999999999999888   789999999999999999988654433

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.64  E-value=1.4e-15  Score=140.67  Aligned_cols=98  Identities=18%  Similarity=0.359  Sum_probs=84.9

Q ss_pred             CCCCCEEEEECCccccccc------cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606           79 LPSGSLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~------~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      +.++.+|||||||+|..+.      ..++.+++|+|+|+.|++.|+++        +++++++|+..++++  .+|+|++
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~  131 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL  131 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence            4678899999999999752      24778999999999999999886        478999999988764  4899999


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..++||+.+.+ +..++++++++|||||.+++...
T Consensus       132 ~~~l~~l~~~~-~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        132 NFTLQFLEPSE-RQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             hhHHHhCCHHH-HHHHHHHHHHhcCCCCEEEEEEe
Confidence            99999998644 68899999999999999999863

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.64  E-value=2.2e-15  Score=140.66  Aligned_cols=104  Identities=26%  Similarity=0.309  Sum_probs=89.9

Q ss_pred             CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      .+.++.+|||||||+|..+..   ..++.|+|+|+|+.|++.|+++     ++.+..+|+...|+++++||+|++..+++
T Consensus        49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~  128 (263)
T PTZ00098         49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAIL  128 (263)
T ss_pred             CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence            457889999999999986532   3467999999999999999986     47889999999999899999999999999


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      |++..+ +..+|+++.++|||||++++..+...
T Consensus       129 h~~~~d-~~~~l~~i~r~LkPGG~lvi~d~~~~  160 (263)
T PTZ00098        129 HLSYAD-KKKLFEKCYKWLKPNGILLITDYCAD  160 (263)
T ss_pred             hCCHHH-HHHHHHHHHHHcCCCcEEEEEEeccc
Confidence            987433 78999999999999999999987643

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.62  E-value=1.2e-15  Score=130.50  Aligned_cols=97  Identities=34%  Similarity=0.584  Sum_probs=85.4

Q ss_pred             CCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEEEec
Q 018606           80 PSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISI  145 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~Vi~~  145 (353)
                      ..+.+|||+|||+|.++.     ..++.+++|+|+|+.|++.|+++       +++|+++|+.+++  ++ +.||+|++.
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~   80 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN   80 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence            356899999999999753     35688999999999999999985       5799999999977  55 899999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .+++|+.+   +..+++++.++|++||.+++..+.
T Consensus        81 ~~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   81 GVLHHFPD---PEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             STGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CchhhccC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence            99999998   678999999999999999999877

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.62  E-value=4.8e-16  Score=139.88  Aligned_cols=99  Identities=22%  Similarity=0.323  Sum_probs=86.5

Q ss_pred             CCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606           81 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~  152 (353)
                      +|.+|||||||-|.++.  +..|..|+|+|+|+.+++.|+.+    +  +++.+..++++....++||+|+|..||+|++
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~  138 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP  138 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence            78999999999999875  36679999999999999999976    3  4577777777766568999999999999999


Q ss_pred             ChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          153 TESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +   +..+++.+.+.+||||.+++++.+..
T Consensus       139 d---p~~~~~~c~~lvkP~G~lf~STinrt  165 (243)
T COG2227         139 D---PESFLRACAKLVKPGGILFLSTINRT  165 (243)
T ss_pred             C---HHHHHHHHHHHcCCCcEEEEeccccC
Confidence            9   67899999999999999999998743

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.60  E-value=7.8e-15  Score=131.25  Aligned_cols=109  Identities=24%  Similarity=0.255  Sum_probs=86.6

Q ss_pred             HHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCcc
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGD  140 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD  140 (353)
                      +.+...+... ++.+|||+|||+|.++..  ..+..|+|+|+|+.|++.++++       ++++..+|+..+++ ++.||
T Consensus        20 ~~l~~~l~~~-~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD   97 (197)
T PRK11207         20 SEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYD   97 (197)
T ss_pred             HHHHHhcccC-CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcC
Confidence            4555555433 457999999999997642  4577999999999999998875       46788899988777 46799


Q ss_pred             EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEE-EEcCC
Q 018606          141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI-TVWAV  181 (353)
Q Consensus       141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli-~~~~~  181 (353)
                      +|++..++||+...+ +..+++++.++|+|||.+++ .++..
T Consensus        98 ~I~~~~~~~~~~~~~-~~~~l~~i~~~LkpgG~~~~~~~~~~  138 (197)
T PRK11207         98 FILSTVVLMFLEAKT-IPGLIANMQRCTKPGGYNLIVAAMDT  138 (197)
T ss_pred             EEEEecchhhCCHHH-HHHHHHHHHHHcCCCcEEEEEEEecC
Confidence            999999999887433 78999999999999999655 44433

>TIGR00740 methyltransferase, putative

Probab=99.60  E-value=4.8e-15  Score=136.35  Aligned_cols=99  Identities=19%  Similarity=0.301  Sum_probs=84.8

Q ss_pred             CCCCCEEEEECCccccccc----c--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606           79 LPSGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      +.++.+|||||||+|.++.    .  .++.+++|+|+|+.|++.|+++        +++++++|+..++++  .+|+|++
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~  128 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL  128 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence            3577899999999999753    1  3688999999999999999875        368899999998875  4899999


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ..++||+.+.+ +..+++++.++|+|||.+++....
T Consensus       129 ~~~l~~~~~~~-~~~~l~~i~~~LkpgG~l~i~d~~  163 (239)
T TIGR00740       129 NFTLQFLPPED-RIALLTKIYEGLNPNGVLVLSEKF  163 (239)
T ss_pred             ecchhhCCHHH-HHHHHHHHHHhcCCCeEEEEeecc
Confidence            99999997544 689999999999999999998754

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.60  E-value=3.9e-15  Score=138.34  Aligned_cols=98  Identities=22%  Similarity=0.323  Sum_probs=85.2

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~  152 (353)
                      +.++.+|||||||+|.++.    ..++..|+|+|+|+.|++.|+++  ++.++.+|+..+. +..+||+|++..++||+.
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~  107 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLP  107 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCC
Confidence            4567899999999998753    35678999999999999999987  6889999998765 356899999999999998


Q ss_pred             ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          153 TESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +   ...+++++.++|||||.+++..+.
T Consensus       108 d---~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683        108 D---HLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             C---HHHHHHHHHHhcCCCcEEEEECCC
Confidence            7   678999999999999999998644

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.60  E-value=4.7e-15  Score=142.44  Aligned_cols=135  Identities=19%  Similarity=0.268  Sum_probs=103.1

Q ss_pred             CChHHHHHHHHH--HHHhhcccccccc-ccChHH-H-HHHHhC---CCCCCEEEEECCccccccc----cCCCcEEEEEe
Q 018606           41 STPELEKKYVHR--VYDAIAPHFSSTR-FAKWPK-V-ATFLNS---LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCD  108 (353)
Q Consensus        41 ~~~~~e~~~v~~--~yd~~a~~y~~~~-~~~~~~-~-~~~l~~---l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD  108 (353)
                      +.+..-+++...  +|+.++..|+..- ...|.. + ...+..   ..++.+|||||||+|.++.    ..++..++|+|
T Consensus        65 ~~~~~~~h~~~~~~~y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD  144 (340)
T PLN02490         65 SQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILD  144 (340)
T ss_pred             cccchhhhhhcceeEccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEE
Confidence            334444444444  5788888888632 223322 1 122322   2467899999999999643    24567999999


Q ss_pred             CCHHHHHHHHHc----CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          109 ISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       109 ~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +|+.|++.|+++    +++++.+|+..+++++++||+|++..+++|+++   ...+|+++.++|+|||++++..
T Consensus       145 ~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d---~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        145 QSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD---PQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             CCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC---HHHHHHHHHHhcCCCcEEEEEE
Confidence            999999999886    688999999999998899999999999999998   5679999999999999998864

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.59  E-value=1.2e-14  Score=130.64  Aligned_cols=105  Identities=24%  Similarity=0.367  Sum_probs=87.6

Q ss_pred             HHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           72 VATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        72 ~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      +...+..++++.+|||||||+|.++.    ..++..++|+|+|+.|++.|+++  ++.+.++|+.. |+++++||+|++.
T Consensus        34 ~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~  112 (204)
T TIGR03587        34 FARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTK  112 (204)
T ss_pred             HHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEEC
Confidence            33445567788899999999999754    24678999999999999999985  67899999988 8889999999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++|+|+++ +.+..+++++.|++  ++.++|..+.
T Consensus       113 ~vL~hl~p-~~~~~~l~el~r~~--~~~v~i~e~~  144 (204)
T TIGR03587       113 GVLIHINP-DNLPTAYRELYRCS--NRYILIAEYY  144 (204)
T ss_pred             ChhhhCCH-HHHHHHHHHHHhhc--CcEEEEEEee
Confidence            99999974 45789999999998  5677777654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.59  E-value=1.5e-14  Score=129.15  Aligned_cols=107  Identities=19%  Similarity=0.175  Sum_probs=84.0

Q ss_pred             HHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCCccEE
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      .+...+.... +.+|||+|||+|.++..  ..+..|+|+|+|+.|++.++++    +  +.+..+|+...+++ ++||+|
T Consensus        21 ~l~~~~~~~~-~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I   98 (195)
T TIGR00477        21 AVREAVKTVA-PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFI   98 (195)
T ss_pred             HHHHHhccCC-CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEE
Confidence            4445554443 56999999999997542  4578999999999999988765    3  56677787766664 579999


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++..++||+.... +..+++++.++|+|||++++..|.
T Consensus        99 ~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~lli~~~~  135 (195)
T TIGR00477        99 FSTVVFMFLQAGR-VPEIIANMQAHTRPGGYNLIVAAM  135 (195)
T ss_pred             EEecccccCCHHH-HHHHHHHHHHHhCCCcEEEEEEec
Confidence            9999999987543 678999999999999997777654

Part of a tellurite-reducing operon tehA and tehB

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.58  E-value=9.6e-15  Score=140.13  Aligned_cols=108  Identities=24%  Similarity=0.325  Sum_probs=86.0

Q ss_pred             HHHHHHHhCCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHH--------cCCeEEEeeCCCCCCCCCC
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVD--------RGHEVLVADAVNLPYRSDF  138 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~--------~~i~~~~~D~~~l~~~~~~  138 (353)
                      ..+...+..+ ++.+|||||||+|.++..   .....|+|+|+|+.|+..++.        .++.++.+|+..+|+ ++.
T Consensus       112 ~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~  189 (322)
T PRK15068        112 DRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA  189 (322)
T ss_pred             HHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence            3344444333 578999999999998642   222369999999999865432        157899999999998 789


Q ss_pred             ccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          139 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       139 fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ||+|+|.++++|+.+   +..+|++++++|+|||.+++.++..+
T Consensus       190 FD~V~s~~vl~H~~d---p~~~L~~l~~~LkpGG~lvl~~~~i~  230 (322)
T PRK15068        190 FDTVFSMGVLYHRRS---PLDHLKQLKDQLVPGGELVLETLVID  230 (322)
T ss_pred             cCEEEECChhhccCC---HHHHHHHHHHhcCCCcEEEEEEEEec
Confidence            999999999999988   67899999999999999999876544

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.57  E-value=2.7e-15  Score=119.51  Aligned_cols=87  Identities=31%  Similarity=0.598  Sum_probs=71.5

Q ss_pred             EEEECCcccccccc-------CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEech-hhhh
Q 018606           85 VLDAGCGNGKYLGL-------NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA-VLHH  150 (353)
Q Consensus        85 VLDvGCG~G~~~~~-------~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~-vl~h  150 (353)
                      |||+|||+|.++..       .+...++|+|+|+.|++.++++      .++++++|+.+++..+++||+|++.+ +++|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            79999999997531       2348999999999999999987      46999999999998888999999955 5999


Q ss_pred             cCChhHHHHHHHHHHhccccCc
Q 018606          151 LSTESRRKKAIEELVRVVKKGS  172 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG  172 (353)
                      +.+.+ ...+++++.++|||||
T Consensus        81 ~~~~~-~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   81 LSPEE-LEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSHHH-HHHHHHHHHHTEEEEE
T ss_pred             CCHHH-HHHHHHHHHHHhCCCC
Confidence            87655 7899999999999998

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.56  E-value=1e-14  Score=132.97  Aligned_cols=99  Identities=27%  Similarity=0.413  Sum_probs=87.2

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      .+.+|||||||+|.++.    ..+...++|+|+++.+++.++++   ++.++.+|+..+++++++||+|++..++||+.+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~  113 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD  113 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence            34689999999998653    35667899999999999999887   578999999999988899999999999999988


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                         +..+|.++.++|+|||.+++..+...
T Consensus       114 ---~~~~l~~~~~~L~~~G~l~~~~~~~~  139 (240)
T TIGR02072       114 ---LSQALSELARVLKPGGLLAFSTFGPG  139 (240)
T ss_pred             ---HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence               67899999999999999999987644

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.56  E-value=1.5e-14  Score=146.05  Aligned_cols=101  Identities=30%  Similarity=0.403  Sum_probs=88.6

Q ss_pred             CCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           79 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      +.++.+|||||||+|..+.   ...++.|+|+|+|+.|++.|+++      ++.|..+|+..+++++++||+|++..+++
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~  343 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL  343 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence            4677899999999998543   23477999999999999999875      46899999999988888999999999999


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      |+.+   +..++++++|+|||||++++.++...
T Consensus       344 h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~  373 (475)
T PLN02336        344 HIQD---KPALFRSFFKWLKPGGKVLISDYCRS  373 (475)
T ss_pred             ccCC---HHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            9998   67899999999999999999988654

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.56  E-value=2.8e-14  Score=129.13  Aligned_cols=112  Identities=21%  Similarity=0.279  Sum_probs=90.3

Q ss_pred             HHHHHHHhCC--CCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------------------CCeEEE
Q 018606           70 PKVATFLNSL--PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------------------GHEVLV  126 (353)
Q Consensus        70 ~~~~~~l~~l--~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------------------~i~~~~  126 (353)
                      +.+..++..+  +++.+|||+|||.|..+.  +..|..|+|+|+|+.+++.+.+.                   ++++++
T Consensus        21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  100 (213)
T TIGR03840        21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC  100 (213)
T ss_pred             HHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence            4455555544  577899999999999765  36788999999999999986331                   467899


Q ss_pred             eeCCCCCCC-CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          127 ADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       127 ~D~~~l~~~-~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +|+..++.. .+.||.|+...+++|++... +..+++.+.++|||||++++.++...
T Consensus       101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~-R~~~~~~l~~lLkpgG~~ll~~~~~~  156 (213)
T TIGR03840       101 GDFFALTAADLGPVDAVYDRAALIALPEEM-RQRYAAHLLALLPPGARQLLITLDYD  156 (213)
T ss_pred             ccCCCCCcccCCCcCEEEechhhccCCHHH-HHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence            999987742 46799999999999997544 78899999999999999888877654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.55  E-value=1.9e-14  Score=134.94  Aligned_cols=102  Identities=25%  Similarity=0.359  Sum_probs=88.1

Q ss_pred             hCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      ..+.++.+|||||||+|..+.     ..+..+|+|+|+++.|++.|+++       +++++.+|+..+++++++||+|++
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~  152 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS  152 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence            356789999999999998532     14556899999999999999875       568889999999988889999999


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ..+++|.++   ...+++++.++|||||++++..+..
T Consensus       153 ~~v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~~~~  186 (272)
T PRK11873        153 NCVINLSPD---KERVFKEAFRVLKPGGRFAISDVVL  186 (272)
T ss_pred             cCcccCCCC---HHHHHHHHHHHcCCCcEEEEEEeec
Confidence            999999887   5789999999999999999987654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.55  E-value=5.1e-14  Score=133.18  Aligned_cols=106  Identities=20%  Similarity=0.195  Sum_probs=84.6

Q ss_pred             HHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEE
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      .+...+..+++ .+|||||||+|.++..  ..+..|+|+|+|+.|++.++++      ++++...|+...++ +++||+|
T Consensus       111 ~~~~~~~~~~~-~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I  188 (287)
T PRK12335        111 EVLEAVQTVKP-GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFI  188 (287)
T ss_pred             HHHHHhhccCC-CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEE
Confidence            34444444444 5999999999997642  4578999999999999988765      46777888877666 6789999


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ++..++||+... ++..+++++.++|+|||++++..+
T Consensus       189 ~~~~vl~~l~~~-~~~~~l~~~~~~LkpgG~~l~v~~  224 (287)
T PRK12335        189 LSTVVLMFLNRE-RIPAIIKNMQEHTNPGGYNLIVCA  224 (287)
T ss_pred             EEcchhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEEe
Confidence            999999998743 378999999999999999777654

>TIGR00452 methyltransferase, putative

Probab=99.54  E-value=2.8e-14  Score=136.00  Aligned_cols=100  Identities=17%  Similarity=0.156  Sum_probs=81.1

Q ss_pred             CCCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHH---c-----CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVD---R-----GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~---~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      ..++.+|||||||+|.++..  ..+ ..|+|+|+|+.|+..++.   .     .+.+..+++..++.. ..||+|+|.++
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv  197 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV  197 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence            34578999999999997532  233 379999999999875432   1     457788888888864 58999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ++|+.+   +..+|++++++|||||.|++.++..+
T Consensus       198 L~H~~d---p~~~L~el~r~LkpGG~Lvletl~i~  229 (314)
T TIGR00452       198 LYHRKS---PLEHLKQLKHQLVIKGELVLETLVID  229 (314)
T ss_pred             hhccCC---HHHHHHHHHHhcCCCCEEEEEEEEec
Confidence            999988   67899999999999999999876544

Known examples to date are restricted to the proteobacteria.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.53  E-value=2.9e-15  Score=118.64  Aligned_cols=86  Identities=34%  Similarity=0.588  Sum_probs=55.5

Q ss_pred             EEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----C--CeEEEeeCCCCC--CCCCCccEEEechhhhhcC
Q 018606           86 LDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----G--HEVLVADAVNLP--YRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        86 LDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----~--i~~~~~D~~~l~--~~~~~fD~Vi~~~vl~h~~  152 (353)
                      ||||||+|.++..    .+..+++|+|+|+.|++.|+++     .  ......+..+..  ...++||+|++..++||+.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            7999999998753    5788999999999999777766     1  223333333322  1125999999999999996


Q ss_pred             ChhHHHHHHHHHHhccccCcEE
Q 018606          153 TESRRKKAIEELVRVVKKGSLV  174 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~l  174 (353)
                      +   +..+++.+.++|+|||+|
T Consensus        81 ~---~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   81 D---IEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ----HHHHHHHHTTT-TSS-EE
T ss_pred             h---HHHHHHHHHHHcCCCCCC
Confidence            5   789999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.53  E-value=1.1e-13  Score=126.40  Aligned_cols=132  Identities=26%  Similarity=0.430  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHhhccccccc-c------ccChHH-HHHHHhCCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHH
Q 018606           46 EKKYVHRVYDAIAPHFSST-R------FAKWPK-VATFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPS  112 (353)
Q Consensus        46 e~~~v~~~yd~~a~~y~~~-~------~~~~~~-~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~  112 (353)
                      .++.+.++|+.++..|+.. +      ...|.. +...+ ...++.+|||+|||+|.++.    ..+ ..+++|+|+++.
T Consensus         9 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~   87 (239)
T PRK00216          9 KQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWL-GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG   87 (239)
T ss_pred             chHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHh-CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH
Confidence            4567788999999988631 1      222222 22222 34467899999999999753    233 589999999999


Q ss_pred             HHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          113 LIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       113 ~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +++.++++        ++.++.+|+..+++..+.||+|++..+++++.+   +..+|.++.++|+|||.+++..+..
T Consensus        88 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~---~~~~l~~~~~~L~~gG~li~~~~~~  161 (239)
T PRK00216         88 MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPD---IDKALREMYRVLKPGGRLVILEFSK  161 (239)
T ss_pred             HHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCC---HHHHHHHHHHhccCCcEEEEEEecC
Confidence            99999885        368889999988877789999999999999988   6789999999999999999887654

>PRK06202 hypothetical protein; Provisional

Probab=99.53  E-value=6.2e-14  Score=128.40  Aligned_cols=111  Identities=19%  Similarity=0.168  Sum_probs=87.2

Q ss_pred             hHHHHHHHhCCCCCCEEEEECCcccccccc--------CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCC
Q 018606           69 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--------NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRS  136 (353)
Q Consensus        69 ~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--------~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~  136 (353)
                      +..+........++.+|||||||+|.++..        .++..|+|+|+|+.|++.|+++    ++.+...+...++..+
T Consensus        48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~  127 (232)
T PRK06202         48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEG  127 (232)
T ss_pred             HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccC
Confidence            444444433445678999999999986421        2456999999999999999886    5778888888888778


Q ss_pred             CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          137 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ++||+|+++.++||+++++ ...+++++.|+++  |.+++..+...
T Consensus       128 ~~fD~V~~~~~lhh~~d~~-~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        128 ERFDVVTSNHFLHHLDDAE-VVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             CCccEEEECCeeecCChHH-HHHHHHHHHHhcC--eeEEEeccccC
Confidence            8999999999999998765 5689999999998  56666665543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.53  E-value=6.7e-14  Score=126.37  Aligned_cols=127  Identities=28%  Similarity=0.468  Sum_probs=98.6

Q ss_pred             HHHHHhhcccccccc-------ccChHHHHHHHhCCCCCCEEEEECCccccccc----cCCC-cEEEEEeCCHHHHHHHH
Q 018606           51 HRVYDAIAPHFSSTR-------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICV  118 (353)
Q Consensus        51 ~~~yd~~a~~y~~~~-------~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~-~~v~gvD~S~~~l~~a~  118 (353)
                      +++|+.++.+|+...       ...|...........++.+|||+|||+|.++.    ..+. ..++|+|+++.+++.++
T Consensus         2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~   81 (223)
T TIGR01934         2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK   81 (223)
T ss_pred             HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence            467777777776532       12232222212234477899999999999753    2333 68999999999999998


Q ss_pred             Hc-----CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          119 DR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       119 ~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++     ++.+..+|+..++++.+.||+|++..+++|+.+   +..+++++.++|+|||++++..+.
T Consensus        82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934        82 KKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTD---IQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             HHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCccc---HHHHHHHHHHHcCCCcEEEEEEec
Confidence            75     478999999998887889999999999999987   678999999999999999988764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.52  E-value=1.9e-14  Score=130.58  Aligned_cols=96  Identities=23%  Similarity=0.317  Sum_probs=81.0

Q ss_pred             CCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc---------C----CeEEEeeCCCCCCCCCCccEEEech
Q 018606           82 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------G----HEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~---------~----i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      |.+|||+|||+|.+...  ..+..|+|+|+++.|++.|+++         +    +++...|++.+   .+.||+|+|..
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse  166 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE  166 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence            47899999999998763  5678999999999999999986         1    34555555554   34599999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +++|+.+   +..++..+.+.|||||+++|++.+...
T Consensus       167 vleHV~d---p~~~l~~l~~~lkP~G~lfittinrt~  200 (282)
T KOG1270|consen  167 VLEHVKD---PQEFLNCLSALLKPNGRLFITTINRTI  200 (282)
T ss_pred             HHHHHhC---HHHHHHHHHHHhCCCCceEeeehhhhH
Confidence            9999999   789999999999999999999977554

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.51  E-value=1.5e-13  Score=127.76  Aligned_cols=102  Identities=22%  Similarity=0.317  Sum_probs=87.6

Q ss_pred             CCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.||.+|||||||.|.++.   ...+++|+|+++|+++.+.++++        ++++...|...+.   +.||.|++++
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg  145 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG  145 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehh
Confidence            67899999999999999764   24589999999999999999985        4678888877765   3499999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +++|+.... ...+++.+.++|+|||++++-+.....
T Consensus       146 mfEhvg~~~-~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         146 MFEHVGKEN-YDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             hHHHhCccc-HHHHHHHHHhhcCCCceEEEEEecCCC
Confidence            999998744 789999999999999999998876544

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.50  E-value=4.5e-14  Score=131.89  Aligned_cols=97  Identities=14%  Similarity=0.170  Sum_probs=82.0

Q ss_pred             CCCEEEEECCccccc----c----ccC-----CCcEEEEEeCCHHHHHHHHHc---------------------------
Q 018606           81 SGSLVLDAGCGNGKY----L----GLN-----PDCFFVGCDISPSLIKICVDR---------------------------  120 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~----~----~~~-----~~~~v~gvD~S~~~l~~a~~~---------------------------  120 (353)
                      ++.+|+|+|||+|.-    +    ...     ++..|+|+|+|+.|++.|++.                           
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            457999999999962    1    111     257999999999999999873                           


Q ss_pred             -------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          121 -------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       121 -------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                             .+.|.++|+...+++.+.||+|+|.++++|++++. ...++++++++|+|||.+++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~-~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT-QRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH-HHHHHHHHHHHhCCCeEEEEEC
Confidence                   46889999999887788999999999999997644 6789999999999999999863

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK06922 hypothetical protein; Provisional

Probab=99.50  E-value=1.4e-13  Score=140.38  Aligned_cols=105  Identities=26%  Similarity=0.392  Sum_probs=87.6

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC--CCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~--~~~~~fD~Vi~~  145 (353)
                      ...++.+|||||||+|.++.    ..++..++|+|+|+.|++.|+++      ++.++++|+.++|  +++++||+|+++
T Consensus       415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYS  494 (677)
T ss_pred             hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence            44568899999999998743    36788999999999999999875      3577889998887  788999999999


Q ss_pred             hhhhhcC----------ChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          146 AVLHHLS----------TESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       146 ~vl~h~~----------~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .++||+.          +.+.+..+|+++.++|||||++++......
T Consensus       495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~  541 (677)
T PRK06922        495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT  541 (677)
T ss_pred             hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence            9999863          123478999999999999999999875433

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.49  E-value=6.5e-14  Score=131.21  Aligned_cols=103  Identities=24%  Similarity=0.374  Sum_probs=77.3

Q ss_pred             CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+++|.+|||||||.|.++..   ..+++|+|+.+|+...+.|+++        .+++..+|..+++.   +||.|+++.
T Consensus        59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~  135 (273)
T PF02353_consen   59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE  135 (273)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence            478999999999999997642   3388999999999999999876        36788899887654   899999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      +++|+.... ...+++++.++|||||++++..+.....
T Consensus       136 ~~Ehvg~~~-~~~~f~~~~~~LkpgG~~~lq~i~~~~~  172 (273)
T PF02353_consen  136 MFEHVGRKN-YPAFFRKISRLLKPGGRLVLQTITHRDP  172 (273)
T ss_dssp             EGGGTCGGG-HHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred             chhhcChhH-HHHHHHHHHHhcCCCcEEEEEecccccc
Confidence            999997543 6899999999999999999988776553

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK08317 hypothetical protein; Provisional

Probab=99.49  E-value=2.8e-13  Score=123.25  Aligned_cols=100  Identities=32%  Similarity=0.482  Sum_probs=87.9

Q ss_pred             CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.++.+|||+|||+|.++..     .+...++|+|+++.+++.|+++      ++.+..+|+..+++.++.||+|++..
T Consensus        16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~   95 (241)
T PRK08317         16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR   95 (241)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence            467788999999999997532     2567999999999999999876      47889999998888889999999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +++|+.+   +..+++++.++|+|||.+++....
T Consensus        96 ~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         96 VLQHLED---PARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             hhhccCC---HHHHHHHHHHHhcCCcEEEEEecC
Confidence            9999998   678999999999999999998754

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.48  E-value=1.1e-13  Score=121.51  Aligned_cols=100  Identities=21%  Similarity=0.238  Sum_probs=79.3

Q ss_pred             CCCCEEEEECCcccccccc-CC-CcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606           80 PSGSLVLDAGCGNGKYLGL-NP-DCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~-~~-~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~  152 (353)
                      +...++||+|||+|.++.. .+ .-.++++|+|+..++.|+++     ++++.++|+... .+.+.||+|+++.+++++.
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~  120 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLD  120 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSS
T ss_pred             cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCC
Confidence            3447999999999999763 22 34999999999999999998     689999999875 4678999999999999999


Q ss_pred             ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          153 TESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +.+.+..++..+...|+|||.|++..|-
T Consensus       121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen  121 DAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            8666889999999999999999999874

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.48  E-value=9.3e-14  Score=122.58  Aligned_cols=117  Identities=22%  Similarity=0.270  Sum_probs=95.1

Q ss_pred             cccccChHHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCC
Q 018606           63 STRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRS  136 (353)
Q Consensus        63 ~~~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~  136 (353)
                      ..|..+...+...+ .+.+...|.|+|||+|..+.    ..|+..++|+|-|+.|++.|+++  +.+|..+|+....- .
T Consensus        13 ~eRtRPa~dLla~V-p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p-~   90 (257)
T COG4106          13 DERTRPARDLLARV-PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKP-E   90 (257)
T ss_pred             HhccCcHHHHHhhC-CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCC-C
Confidence            34444444444333 23445799999999999654    48999999999999999999988  78999999998753 5


Q ss_pred             CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          137 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      ..+|+++++++||++++   -.++|.++...|.|||.|.+..+...++
T Consensus        91 ~~~dllfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~de  135 (257)
T COG4106          91 QPTDLLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDE  135 (257)
T ss_pred             Cccchhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCc
Confidence            67899999999999998   6789999999999999999998765443

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.48  E-value=2.4e-13  Score=120.18  Aligned_cols=130  Identities=27%  Similarity=0.528  Sum_probs=97.5

Q ss_pred             HHHhhccccccc-cccCh-----HHHHHHHhCCCC--CCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHcC-
Q 018606           53 VYDAIAPHFSST-RFAKW-----PKVATFLNSLPS--GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRG-  121 (353)
Q Consensus        53 ~yd~~a~~y~~~-~~~~~-----~~~~~~l~~l~~--~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~~-  121 (353)
                      ++|..|..|+.. +....     .+...++ .++.  ..-|||||||+|.-...  .++...+|+|+|+.||+.|.++. 
T Consensus        15 Ynd~eA~kYt~nsri~~IQ~em~eRaLELL-alp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~   93 (270)
T KOG1541|consen   15 YNDTEAPKYTQNSRIVLIQAEMAERALELL-ALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVEREL   93 (270)
T ss_pred             echhhhhhccccceeeeehHHHHHHHHHHh-hCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhh
Confidence            446677777653 22211     1222233 3444  67999999999987553  67789999999999999999763 


Q ss_pred             -CeEEEeeCCC-CCCCCCCccEEEechhhhhcCC--------hhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          122 -HEVLVADAVN-LPYRSDFGDAAISIAVLHHLST--------ESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       122 -i~~~~~D~~~-l~~~~~~fD~Vi~~~vl~h~~~--------~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                       -+++.+|+-. +||++++||.+|++..++|+-+        ..|+..++..++.+|++|++.++.++...+
T Consensus        94 egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~  165 (270)
T KOG1541|consen   94 EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE  165 (270)
T ss_pred             hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccch
Confidence             3688888864 8999999999999998887643        233567788899999999999999876544

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.47  E-value=2e-13  Score=124.04  Aligned_cols=93  Identities=26%  Similarity=0.460  Sum_probs=80.9

Q ss_pred             EEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606           84 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL  151 (353)
Q Consensus        84 ~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~  151 (353)
                      +|||||||+|.++.    ..+++.++|+|+|+.+++.|+++        .+.++.+|+...+++ ++||+|++..+++|+
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~   80 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI   80 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence            69999999999653    24568999999999999999875        358899999777764 589999999999999


Q ss_pred             CChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          152 STESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       152 ~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .+   ...+++++.++|+|||.+++..+.
T Consensus        81 ~~---~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       81 KD---KMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             CC---HHHHHHHHHHHcCCCCEEEEEEcc
Confidence            87   678999999999999999998764

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.47  E-value=4.7e-13  Score=121.53  Aligned_cols=131  Identities=19%  Similarity=0.227  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhhccccccccccChHHHHHHHh--CCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHH-c-
Q 018606           47 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD-R-  120 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~--~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~-~-  120 (353)
                      .+.+.+.|+.-..-|..  ..+-+.+..++.  .++++.+|||+|||.|..+.  +..|..|+|+|+|+.+++.+.+ + 
T Consensus         3 ~~~Wd~rw~~~~~~~~~--~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~   80 (218)
T PRK13255          3 PDFWHEKWAENQIGFHQ--EEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENG   80 (218)
T ss_pred             HhHHHHHHcCCCCCCCC--CCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcC
Confidence            45667777654332332  233344555554  33567899999999999765  3678899999999999998643 2 


Q ss_pred             -----------------CCeEEEeeCCCCCCC-CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          121 -----------------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       121 -----------------~i~~~~~D~~~l~~~-~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                                       .+++.++|+..++.. ...||+|+...+++|++.. .+..++..+.++|+|||++++.+..
T Consensus        81 l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~-~R~~~~~~l~~lL~pgG~~~l~~~~  157 (218)
T PRK13255         81 LTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEE-MRERYVQQLAALLPAGCRGLLVTLD  157 (218)
T ss_pred             CCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHH-HHHHHHHHHHHHcCCCCeEEEEEEE
Confidence                             357789999987543 2589999999999999754 4789999999999999976665443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.46  E-value=3.7e-13  Score=122.20  Aligned_cols=97  Identities=22%  Similarity=0.296  Sum_probs=81.2

Q ss_pred             CCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC-CCCccEEEechhhhh
Q 018606           81 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR-SDFGDAAISIAVLHH  150 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~-~~~fD~Vi~~~vl~h  150 (353)
                      .+.+|||+|||+|.++..  ..+..++|+|+++.+++.++++       ++.+..+|+..++.. .+.||+|++..+++|
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~  124 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH  124 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence            467999999999997542  3456799999999999998875       367778888776644 378999999999999


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +.+   +..+++++.++|+|||.+++..+.
T Consensus       125 ~~~---~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       125 VPD---PQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             CCC---HHHHHHHHHHhcCCCcEEEEEecC
Confidence            988   678999999999999999988764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.46  E-value=3.2e-13  Score=122.56  Aligned_cols=100  Identities=26%  Similarity=0.358  Sum_probs=80.0

Q ss_pred             HHHHHhC-CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCcc
Q 018606           72 VATFLNS-LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGD  140 (353)
Q Consensus        72 ~~~~l~~-l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD  140 (353)
                      +...+.. ..++.+|||||||+|.++..  ..+..++|+|+|+.|++.|+++        ++.+.++|+..++   ++||
T Consensus        45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD  121 (219)
T TIGR02021        45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFD  121 (219)
T ss_pred             HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcC
Confidence            4444443 55688999999999998642  3466999999999999999875        4678899988875   7899


Q ss_pred             EEEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606          141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      +|++..+++|++... +..++.++.+++++++.+.
T Consensus       122 ~ii~~~~l~~~~~~~-~~~~l~~i~~~~~~~~~i~  155 (219)
T TIGR02021       122 IVVCMDVLIHYPASD-MAKALGHLASLTKERVIFT  155 (219)
T ss_pred             EEEEhhHHHhCCHHH-HHHHHHHHHHHhCCCEEEE
Confidence            999999999987543 6789999999998665444

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR03438 probable methyltransferase

Probab=99.46  E-value=6e-13  Score=126.68  Aligned_cols=107  Identities=16%  Similarity=0.169  Sum_probs=79.7

Q ss_pred             HhCCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHHHHHHHHHc------C--CeEEEeeCCC-CCCCCC----
Q 018606           76 LNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR------G--HEVLVADAVN-LPYRSD----  137 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~~l~~a~~~------~--i~~~~~D~~~-l~~~~~----  137 (353)
                      ...++++.+|||+|||+|..+.    ..+ +..|+|+|+|+.||+.|+++      +  +.++++|+.. +++...    
T Consensus        58 a~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~  137 (301)
T TIGR03438        58 AAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAG  137 (301)
T ss_pred             HHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccC
Confidence            3345677899999999999653    223 68999999999999998775      2  3557899876 344332    


Q ss_pred             CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ...++++..+++++...+ ...+|++++++|+|||.++|.+-...+
T Consensus       138 ~~~~~~~gs~~~~~~~~e-~~~~L~~i~~~L~pgG~~lig~d~~~~  182 (301)
T TIGR03438       138 RRLGFFPGSTIGNFTPEE-AVAFLRRIRQLLGPGGGLLIGVDLVKD  182 (301)
T ss_pred             CeEEEEecccccCCCHHH-HHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence            233444556788887544 789999999999999999998755443

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.45  E-value=1.2e-12  Score=115.95  Aligned_cols=96  Identities=22%  Similarity=0.154  Sum_probs=80.4

Q ss_pred             hCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      ..++++.+|||||||+|..+.    ..++.+|+|+|+|+.|++.|+++       +++++.+|+..++. .++||+|++.
T Consensus        41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~  119 (187)
T PRK00107         41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR  119 (187)
T ss_pred             hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence            345668999999999998543    36788999999999999999875       47899999998877 7799999997


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .    +.+   +..++.++.++|||||++++....
T Consensus       120 ~----~~~---~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        120 A----VAS---LSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             c----ccC---HHHHHHHHHHhcCCCeEEEEEeCC
Confidence            5    233   578999999999999999988654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.45  E-value=3.6e-13  Score=132.14  Aligned_cols=101  Identities=26%  Similarity=0.374  Sum_probs=84.7

Q ss_pred             CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      .+.++.+|||||||+|.++..   ..+++|+|+|+|+.|++.|+++    .+++..+|+..+   +++||+|+++.+++|
T Consensus       164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh  240 (383)
T PRK11705        164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEH  240 (383)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence            357889999999999998642   3478999999999999999986    356777777655   478999999999999


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +.... +..+++++.++|||||++++.++...
T Consensus       241 vg~~~-~~~~l~~i~r~LkpGG~lvl~~i~~~  271 (383)
T PRK11705        241 VGPKN-YRTYFEVVRRCLKPDGLFLLHTIGSN  271 (383)
T ss_pred             CChHH-HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            97543 57899999999999999999987654

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.45  E-value=5e-13  Score=118.27  Aligned_cols=108  Identities=25%  Similarity=0.301  Sum_probs=82.8

Q ss_pred             HHHHHHHhCCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccE
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDA  141 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~  141 (353)
                      ..+...+..++ +.++||+|||.|+.+.  +..|..|+++|.|+..++.+++.      .++....|+....++ +.||+
T Consensus        20 s~v~~a~~~~~-~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~   97 (192)
T PF03848_consen   20 SEVLEAVPLLK-PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDF   97 (192)
T ss_dssp             HHHHHHCTTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEE
T ss_pred             HHHHHHHhhcC-CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCE
Confidence            34555555554 5699999999999765  36789999999999988776553      467788999888774 68999


Q ss_pred             EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      |++..+++|+..+ .+..++..|...++|||++++.++.
T Consensus        98 I~st~v~~fL~~~-~~~~i~~~m~~~~~pGG~~li~~~~  135 (192)
T PF03848_consen   98 IVSTVVFMFLQRE-LRPQIIENMKAATKPGGYNLIVTFM  135 (192)
T ss_dssp             EEEESSGGGS-GG-GHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             EEEEEEeccCCHH-HHHHHHHHHHhhcCCcEEEEEEEec
Confidence            9999999999865 4788999999999999999987653

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.43  E-value=6.1e-13  Score=118.59  Aligned_cols=101  Identities=29%  Similarity=0.469  Sum_probs=81.6

Q ss_pred             HHHHhCCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-C-CCCCCCccEEEechh
Q 018606           73 ATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-L-PYRSDFGDAAISIAV  147 (353)
Q Consensus        73 ~~~l~~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l-~~~~~~fD~Vi~~~v  147 (353)
                      ..+...++++.+|||||||+|.++..   ..+..++|+|+|+.|++.|++++++++++|+.. + ++++++||+|++..+
T Consensus         5 ~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~   84 (194)
T TIGR02081         5 ESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQT   84 (194)
T ss_pred             HHHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence            34444556788999999999997642   345688999999999999998899999999976 4 367789999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      +||+.+   +..+|+++.|+++   .+++.++
T Consensus        85 l~~~~d---~~~~l~e~~r~~~---~~ii~~p  110 (194)
T TIGR02081        85 LQATRN---PEEILDEMLRVGR---HAIVSFP  110 (194)
T ss_pred             hHcCcC---HHHHHHHHHHhCC---eEEEEcC
Confidence            999988   6788999888765   4455543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.42  E-value=3.1e-13  Score=125.93  Aligned_cols=116  Identities=23%  Similarity=0.336  Sum_probs=88.4

Q ss_pred             ccChHHHHHHHhCCCCCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHH---c---CCe--EEEeeCCCCCC
Q 018606           66 FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVD---R---GHE--VLVADAVNLPY  134 (353)
Q Consensus        66 ~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~---~---~i~--~~~~D~~~l~~  134 (353)
                      .-.|.++...+..+ .|.+|||||||+|.++-.  ..|+ .|+|+|++.......+-   .   ...  ++..-++.+|.
T Consensus       101 d~KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~  179 (315)
T PF08003_consen  101 DWKWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN  179 (315)
T ss_pred             cchHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc
Confidence            34567777777654 578999999999998632  3344 89999999876544322   1   122  22245677776


Q ss_pred             CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccch
Q 018606          135 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK  186 (353)
Q Consensus       135 ~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~~  186 (353)
                       .+.||+|+|.+||.|..+   +...|.+++..|+|||.+++.+...+....
T Consensus       180 -~~~FDtVF~MGVLYHrr~---Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~  227 (315)
T PF08003_consen  180 -LGAFDTVFSMGVLYHRRS---PLDHLKQLKDSLRPGGELVLETLVIDGDEN  227 (315)
T ss_pred             -cCCcCEEEEeeehhccCC---HHHHHHHHHHhhCCCCEEEEEEeeecCCCc
Confidence             789999999999999999   789999999999999999999877665544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.42  E-value=5e-13  Score=125.40  Aligned_cols=91  Identities=35%  Similarity=0.469  Sum_probs=75.6

Q ss_pred             CCCEEEEECCcccccccc----CC---CcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606           81 SGSLVLDAGCGNGKYLGL----NP---DCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHL  151 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~~----~~---~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~  151 (353)
                      ...+|||+|||+|.++..    .+   +..++|+|+|+.|++.|+++  ++.+.++|+..+|+++++||+|+++..    
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----  160 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----  160 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence            447899999999997542    22   34899999999999999877  688999999999999999999998653    


Q ss_pred             CChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          152 STESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       152 ~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +      ..+.++.|+|||||++++..+..
T Consensus       161 ~------~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        161 P------CKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             C------CCHHHHHhhccCCCEEEEEeCCC
Confidence            1      24688999999999999987654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.40  E-value=1.7e-12  Score=131.08  Aligned_cols=102  Identities=23%  Similarity=0.267  Sum_probs=85.4

Q ss_pred             CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCC--CCCCCCCCccEEEechhhhh
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAV--NLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~--~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      .++.+|||||||+|.++..  .....|+|+|+|+.|++.+++.     ++.++++|+.  .+++++++||+|++..+++|
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~  115 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY  115 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence            3567999999999998642  3356999999999999988754     5789999986  46777889999999999999


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +++.+ +..+++++.|+|||||++++......
T Consensus       116 l~~~~-~~~~l~~~~r~Lk~gG~l~~~d~~~~  146 (475)
T PLN02336        116 LSDKE-VENLAERMVKWLKVGGYIFFRESCFH  146 (475)
T ss_pred             CCHHH-HHHHHHHHHHhcCCCeEEEEEeccCC
Confidence            98754 67899999999999999999865543

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.38  E-value=7e-13  Score=118.98  Aligned_cols=123  Identities=19%  Similarity=0.236  Sum_probs=87.6

Q ss_pred             HHhhccccccccccChHHHHHHHhCCCCCC-EEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-C-------C
Q 018606           54 YDAIAPHFSSTRFAKWPKVATFLNSLPSGS-LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-G-------H  122 (353)
Q Consensus        54 yd~~a~~y~~~~~~~~~~~~~~l~~l~~~~-~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-~-------i  122 (353)
                      |+..+.+|...|..+.-.....+....++. .++|||||+|.-+..  ...-.|+|+|+|+.||+.|++. +       .
T Consensus         5 ~~~~a~~Y~~ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~   84 (261)
T KOG3010|consen    5 FDKQAADYLNARPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPS   84 (261)
T ss_pred             ccccHHHHhhcCCCCcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCc
Confidence            444555566655555455555555555554 899999999954432  2223899999999999999987 2       2


Q ss_pred             eEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCc-EEEEEEcC
Q 018606          123 EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGS-LVLITVWA  180 (353)
Q Consensus       123 ~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG-~lli~~~~  180 (353)
                      .+...++..|--.+++.|+|++..++|++..    .++.+++.|+||+.| .+.+-.+.
T Consensus        85 ~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdl----e~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen   85 TMSSDEMVDLLGGEESVDLITAAQAVHWFDL----ERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             cccccccccccCCCcceeeehhhhhHHhhch----HHHHHHHHHHcCCCCCEEEEEEcc
Confidence            3333444444444899999999999999984    789999999998776 66655554

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.38  E-value=5.8e-12  Score=111.21  Aligned_cols=90  Identities=19%  Similarity=0.166  Sum_probs=73.1

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      ++.+|||||||+|.++.    ..+..+|+|+|+|+.|++.++++       +++++++|+..++. .+.||+|++.. ++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~-~~  119 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA-LA  119 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-cCCccEEEehh-hh
Confidence            47899999999998532    35668999999999999887754       47899999988753 67899999976 33


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                         +   ...+++.+.++|+|||.+++..
T Consensus       120 ---~---~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       120 ---S---LNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             ---C---HHHHHHHHHHhcCCCCEEEEEc
Confidence               3   4567888999999999999874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.38  E-value=2.4e-13  Score=120.85  Aligned_cols=136  Identities=22%  Similarity=0.308  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHhhcccccc-----ccccChHHHHHHHhCCCCC--CEEEEECCccccccccC--CCcEEEEEeCCHHHHHH
Q 018606           46 EKKYVHRVYDAIAPHFSS-----TRFAKWPKVATFLNSLPSG--SLVLDAGCGNGKYLGLN--PDCFFVGCDISPSLIKI  116 (353)
Q Consensus        46 e~~~v~~~yd~~a~~y~~-----~~~~~~~~~~~~l~~l~~~--~~VLDvGCG~G~~~~~~--~~~~v~gvD~S~~~l~~  116 (353)
                      ...||...||+.+..|+.     ..|.....+.+++.....|  .++||+|||||..-...  .-.+++|+|+|.+|+++
T Consensus        83 P~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~k  162 (287)
T COG4976          83 PSAYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAK  162 (287)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHH
Confidence            357999999999999976     2355556777777765554  79999999999875432  22489999999999999


Q ss_pred             HHHcCC--eEEEeeCCC-CC-CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          117 CVDRGH--EVLVADAVN-LP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       117 a~~~~i--~~~~~D~~~-l~-~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      |.++++  .+.++|+.. ++ .....||+|++..|+.++..   +..++.-....|+|||.|.+++-.....
T Consensus       163 A~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~  231 (287)
T COG4976         163 AHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDD  231 (287)
T ss_pred             HHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCC
Confidence            999964  455555543 22 45678999999999999998   7788999999999999999998665543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.35  E-value=1.4e-12  Score=117.12  Aligned_cols=100  Identities=18%  Similarity=0.211  Sum_probs=78.9

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeC-CCCC--CCCCCccEEEech
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADA-VNLP--YRSDFGDAAISIA  146 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~-~~l~--~~~~~fD~Vi~~~  146 (353)
                      ++.+|||||||+|.++.    ..++..|+|+|+|+.|++.|+++       ++.++++|+ ..++  +++++||+|++..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            56799999999998753    35678999999999999999874       578999999 6666  6778999999876


Q ss_pred             hhhhcCCh-----hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTE-----SRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~-----e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ...+....     .....+++++.++|||||.+++....
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~  158 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW  158 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence            54332210     01357899999999999999998643

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.35  E-value=9.3e-12  Score=101.75  Aligned_cols=95  Identities=17%  Similarity=0.224  Sum_probs=75.3

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CCCCCCCccEEEech
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISIA  146 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-l~~~~~~fD~Vi~~~  146 (353)
                      +.++.+|||+|||+|.++.    ..++.+|+|+|+|+.+++.++++       +++++.+|+.. ++....+||+|++..
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~   96 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG   96 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence            4567899999999999753    34668999999999999998764       46777788765 333346899999976


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..++      ...+++++.++|+|||.+++.+.
T Consensus        97 ~~~~------~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        97 SGGL------LQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             cchh------HHHHHHHHHHHcCCCCEEEEEec
Confidence            5432      45789999999999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.35  E-value=4.3e-12  Score=114.57  Aligned_cols=110  Identities=17%  Similarity=0.177  Sum_probs=82.6

Q ss_pred             HHHHHHHhCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCC
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRS  136 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~  136 (353)
                      ..+......+.++.+|||||||+|.++..     .+...|+|+|+++ |..   ..++.++++|+...+        +.+
T Consensus        40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~---~~~v~~i~~D~~~~~~~~~i~~~~~~  115 (209)
T PRK11188         40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDP---IVGVDFLQGDFRDELVLKALLERVGD  115 (209)
T ss_pred             HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccC---CCCcEEEecCCCChHHHHHHHHHhCC
Confidence            34444444568889999999999997541     3457999999988 321   137899999999853        667


Q ss_pred             CCccEEEechhhhhcCChh--------HHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          137 DFGDAAISIAVLHHLSTES--------RRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h~~~~e--------~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +.||+|++..+.++...+.        ....+|.++.++|+|||.+++.+|..+.
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~  170 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG  170 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence            8999999987666544321        0246899999999999999999887654

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.34  E-value=1.3e-11  Score=112.11  Aligned_cols=135  Identities=16%  Similarity=0.180  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHhhccccccccccChHHHHHHHhC--CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606           45 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        45 ~e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~--l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      .+.+++++.|++--.-|+.....  +.+...+..  +.++.+||+.|||.|..+.  +..|..|+|+|+|+..++.+.+.
T Consensus         7 ~~~~fW~~rw~~~~~~f~~~~pn--p~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e   84 (226)
T PRK13256          7 NNNQYWLDRWQNDDVGFCQESPN--EFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQ   84 (226)
T ss_pred             CCHHHHHHHHhcCCCCCccCCCC--HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHH
Confidence            45667888888765555543333  333344433  3456899999999999654  36788999999999999997551


Q ss_pred             -------------------CCeEEEeeCCCCCCC---CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          121 -------------------GHEVLVADAVNLPYR---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       121 -------------------~i~~~~~D~~~l~~~---~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                                         .++++++|+.+++..   .+.||+|+-.++++++++ +++.+.++.|.++|+|||.+++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256         85 NTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             cCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEEE
Confidence                               579999999998642   268999999999999975 457999999999999999999998


Q ss_pred             cCCC
Q 018606          179 WAVE  182 (353)
Q Consensus       179 ~~~~  182 (353)
                      +..+
T Consensus       164 ~~~~  167 (226)
T PRK13256        164 MEHD  167 (226)
T ss_pred             EecC
Confidence            7544

>PLN03075 nicotianamine synthase; Provisional

Probab=99.32  E-value=5.7e-12  Score=118.43  Aligned_cols=96  Identities=21%  Similarity=0.188  Sum_probs=81.1

Q ss_pred             CCCEEEEECCcccccc------ccCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           81 SGSLVLDAGCGNGKYL------GLNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~------~~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      ++.+|+|||||.|.++      ...++.+++|+|+++.+++.|++.         +++|..+|+.+.+...+.||+|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            6689999999998653      236888999999999999999874         4899999998865335789999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                       +++++.... ..+++..+.+.|+|||.+++-.
T Consensus       203 -ALi~~dk~~-k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        203 -ALVGMDKEE-KVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             -ccccccccc-HHHHHHHHHHhcCCCcEEEEec
Confidence             888884322 7899999999999999999986

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.32  E-value=1.1e-11  Score=118.33  Aligned_cols=127  Identities=23%  Similarity=0.285  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHhhc-----cccccc-------cccCh------HHHHHHHhCC--CCCCEEEEECCcccccccc--CCCc
Q 018606           45 LEKKYVHRVYDAIA-----PHFSST-------RFAKW------PKVATFLNSL--PSGSLVLDAGCGNGKYLGL--NPDC  102 (353)
Q Consensus        45 ~e~~~v~~~yd~~a-----~~y~~~-------~~~~~------~~~~~~l~~l--~~~~~VLDvGCG~G~~~~~--~~~~  102 (353)
                      .+++.+.++|+.++     ..|+..       ....|      ..+..++...  .++.+|||||||+|.++..  ..+.
T Consensus        88 ~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~  167 (315)
T PLN02585         88 DDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA  167 (315)
T ss_pred             HHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC
Confidence            45678888998763     334320       01122      2334444322  3578999999999997542  4567


Q ss_pred             EEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhcccc
Q 018606          103 FFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK  170 (353)
Q Consensus       103 ~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkp  170 (353)
                      .|+|+|+|+.|++.|+++            ++.|..+|+..+   ++.||+|+|..+++|+++.. ...+++.+.+ +.+
T Consensus       168 ~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~-~~~ll~~l~~-l~~  242 (315)
T PLN02585        168 IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDK-ADGMIAHLAS-LAE  242 (315)
T ss_pred             EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHH-HHHHHHHHHh-hcC
Confidence            999999999999999876            135667776543   57899999999999988643 4566777765 445


Q ss_pred             CcEEEEE
Q 018606          171 GSLVLIT  177 (353)
Q Consensus       171 gG~lli~  177 (353)
                      ||. +|.
T Consensus       243 g~l-iIs  248 (315)
T PLN02585        243 KRL-IIS  248 (315)
T ss_pred             CEE-EEE
Confidence            544 444

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.32  E-value=1e-11  Score=111.84  Aligned_cols=91  Identities=23%  Similarity=0.237  Sum_probs=73.6

Q ss_pred             CCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           79 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      +.++.+|||||||+|.++..     .+..+|+|+|+++.|++.|+++        +++++.+|+.......+.||+|++.
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~  149 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT  149 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence            46778999999999997531     3356999999999999998875        2678899988755456799999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .++++++         .++.++|+|||+|++.+
T Consensus       150 ~~~~~~~---------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        150 AAASTIP---------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cCcchhh---------HHHHHhcCcCcEEEEEE
Confidence            8877664         35778999999998875

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.31  E-value=6e-12  Score=108.90  Aligned_cols=76  Identities=29%  Similarity=0.356  Sum_probs=69.0

Q ss_pred             EEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEE
Q 018606          105 VGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV  174 (353)
Q Consensus       105 ~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~l  174 (353)
                      +|+|+|++|++.|+++          +++++++|+.++|+++++||+|++..+++++.+   +..+|++++|+|||||.+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l   77 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGSRV   77 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCeEE
Confidence            5899999999999754          378999999999999999999999999999987   789999999999999999


Q ss_pred             EEEEcCCCc
Q 018606          175 LITVWAVEQ  183 (353)
Q Consensus       175 li~~~~~~~  183 (353)
                      ++..|....
T Consensus        78 ~i~d~~~~~   86 (160)
T PLN02232         78 SILDFNKSN   86 (160)
T ss_pred             EEEECCCCC
Confidence            999987543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.30  E-value=1.2e-11  Score=112.64  Aligned_cols=90  Identities=24%  Similarity=0.321  Sum_probs=71.2

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      ..++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++        .+.+..+|+   +..+++||+|++..++
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l  137 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVL  137 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchh
Confidence            45678999999999997542  3456899999999999999876        367788873   3346789999999999


Q ss_pred             hhcCChhHHHHHHHHHHhccccCc
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGS  172 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG  172 (353)
                      +|+++.. ...+++++.+.+++++
T Consensus       138 ~~~~~~~-~~~~l~~l~~~~~~~~  160 (230)
T PRK07580        138 IHYPQED-AARMLAHLASLTRGSL  160 (230)
T ss_pred             hcCCHHH-HHHHHHHHHhhcCCeE
Confidence            9987654 6788899988765433

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.29  E-value=2e-11  Score=116.38  Aligned_cols=101  Identities=16%  Similarity=0.213  Sum_probs=83.1

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      .+.++.+|||||||+|.++.    ..|+.+++++|+ +.+++.++++        +++++.+|+...+++.  +|+|++.
T Consensus       146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~  222 (306)
T TIGR02716       146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFC  222 (306)
T ss_pred             CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeE
Confidence            35677899999999999753    368889999997 7899888764        4789999998766643  6999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .++|+..+.. ...+|++++++|+|||+++|..+...
T Consensus       223 ~~lh~~~~~~-~~~il~~~~~~L~pgG~l~i~d~~~~  258 (306)
T TIGR02716       223 RILYSANEQL-STIMCKKAFDAMRSGGRLLILDMVID  258 (306)
T ss_pred             hhhhcCChHH-HHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            9999887543 57899999999999999999976543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.29  E-value=3.6e-11  Score=110.00  Aligned_cols=99  Identities=22%  Similarity=0.262  Sum_probs=82.2

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC-CCCCCccEEEechhhh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-YRSDFGDAAISIAVLH  149 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~-~~~~~fD~Vi~~~vl~  149 (353)
                      ..++.+|||||||+|.++..  ..+..++++|+++.+++.|+++      .+++..+|+..++ ..++.||+|++..+++
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~  125 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE  125 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence            45678999999999997532  3467899999999999998875      3567777777665 3457899999999999


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      |+.+   +..+|..+.++|+|||.+++..+.
T Consensus       126 ~~~~---~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        126 HVPD---PASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             ccCC---HHHHHHHHHHHcCCCcEEEEEecC
Confidence            9988   678999999999999999988764

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.28  E-value=2e-11  Score=109.67  Aligned_cols=135  Identities=24%  Similarity=0.304  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhhccccccccccChHHHHHHHhCC-CCCCEEEEECCcccccc----cc--CCCcEEEEEeCCHHHHHHHHH
Q 018606           47 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL-PSGSLVLDAGCGNGKYL----GL--NPDCFFVGCDISPSLIKICVD  119 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l-~~~~~VLDvGCG~G~~~----~~--~~~~~v~gvD~S~~~l~~a~~  119 (353)
                      ..++..+|...-..|-..|.-..+..-.++... .+..+||+||||.|..+    ..  .++..|+++|.|+.+++..++
T Consensus        36 ~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~  115 (264)
T KOG2361|consen   36 SKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKK  115 (264)
T ss_pred             hhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHh
Confidence            456777777666665444432222222222211 11128999999999953    23  445899999999999999988


Q ss_pred             c------CCeEEEeeCCC----CCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          120 R------GHEVLVADAVN----LPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       120 ~------~i~~~~~D~~~----l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +      .+...+.|+..    -|...+++|+|+++.+|..+++.. ...++.++.++|||||.+++-+++.-
T Consensus       116 ~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek-~~~a~~nl~~llKPGG~llfrDYg~~  187 (264)
T KOG2361|consen  116 SSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK-MQSVIKNLRTLLKPGGSLLFRDYGRY  187 (264)
T ss_pred             ccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH-HHHHHHHHHHHhCCCcEEEEeecccc
Confidence            7      34445556553    346678999999999999998654 78999999999999999999998754

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.28  E-value=1.4e-11  Score=109.32  Aligned_cols=107  Identities=19%  Similarity=0.227  Sum_probs=78.9

Q ss_pred             HHHHHhCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCC
Q 018606           72 VATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDF  138 (353)
Q Consensus        72 ~~~~l~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~  138 (353)
                      +.+....+.++.+|||+|||+|.++..     .+...|+|+|+|+.+    ...++.++++|+.+.+        ++.+.
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDK   98 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence            344455678899999999999997531     345689999999865    2247889999987643        45678


Q ss_pred             ccEEEechh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          139 GDAAISIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       139 fD~Vi~~~v--------l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ||+|++...        ++|+...+....++..+.++|+|||++++..+..+
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~  150 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE  150 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc
Confidence            999998643        33333223356899999999999999999876543

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.27  E-value=6.1e-12  Score=112.26  Aligned_cols=100  Identities=24%  Similarity=0.367  Sum_probs=77.9

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCCCccEEEech
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAISIA  146 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~---~~~~~fD~Vi~~~  146 (353)
                      ...+|||||||+|.++.    ..|+..++|+|++..|++.|+++       +++++++|+..++   ++++++|.|++..
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            45699999999999753    36788999999999999998765       6789999998654   4567899999876


Q ss_pred             hhhhcCChh--H---HHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTES--R---RKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~e--~---~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ...|.....  +   ...+++++.++|||||.+++.+-.
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~  134 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN  134 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence            544432210  0   147899999999999999888643

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.27  E-value=2.7e-11  Score=109.94  Aligned_cols=133  Identities=21%  Similarity=0.326  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHhhccccccccccChHHHHHHHhC--CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606           45 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        45 ~e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~--l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      |+.+++++.|.+-..-|+....  -+.+..++..  ..++.+||..|||.|.-+.  ...|..|+|+|+|+..++.+.+.
T Consensus         1 m~~~~W~~~w~~~~~~w~~~~~--~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e   78 (218)
T PF05724_consen    1 MDPEFWEERWQEGQTPWDQGEP--NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEE   78 (218)
T ss_dssp             -HHHHHHHHHHTT--TT--TTS--THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCCCCCC--CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHH
Confidence            4678888999886665654333  3445555554  6777899999999998654  25688999999999999998432


Q ss_pred             -------------------CCeEEEeeCCCCCCCC-CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          121 -------------------GHEVLVADAVNLPYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       121 -------------------~i~~~~~D~~~l~~~~-~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                                         +++++++|+..++... +.||+|+-..+|+.++. ++|.+..+.+.++|+|||.+++.+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp-~~R~~Ya~~l~~ll~p~g~~lLi~l~  157 (218)
T PF05724_consen   79 NNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPP-EMRERYAQQLASLLKPGGRGLLITLE  157 (218)
T ss_dssp             CTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-G-GGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred             hccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCH-HHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence                               2578899999987433 58999999999999975 45899999999999999995554443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.26  E-value=3e-11  Score=106.22  Aligned_cols=101  Identities=19%  Similarity=0.189  Sum_probs=78.6

Q ss_pred             CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL  151 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~  151 (353)
                      .++.+|||+|||+|.++..  ..+.+|+|+|+|+.|++.++++      +++++.+|+...+  .++||+|+++..+++.
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~   95 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL   95 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence            3457899999999997542  2234899999999999999875      4677888887654  4589999999877766


Q ss_pred             CChh------------------HHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          152 STES------------------RRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       152 ~~~e------------------~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .+..                  ....++.++.++|+|||.+++......
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~  144 (179)
T TIGR00537        96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN  144 (179)
T ss_pred             cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence            5321                  135689999999999999999876654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK04266 fibrillarin; Provisional

Probab=99.26  E-value=5.3e-11  Score=108.65  Aligned_cols=97  Identities=18%  Similarity=0.242  Sum_probs=72.2

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCC----CCCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNL----PYRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l----~~~~~~fD~Vi~  144 (353)
                      .+.++.+|||+|||+|.++.    ..+...|+|+|+++.|++.+.++     ++.++.+|+...    ++ .+.||+|++
T Consensus        69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~  147 (226)
T PRK04266         69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQ  147 (226)
T ss_pred             CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEE
Confidence            45689999999999999753    23356999999999988754332     788999998752    22 356999985


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .     +.++.....++.++.++|||||.++|.+..
T Consensus       148 d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~  178 (226)
T PRK04266        148 D-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKA  178 (226)
T ss_pred             C-----CCChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4     333322346789999999999999997543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.23  E-value=6.2e-11  Score=107.27  Aligned_cols=93  Identities=23%  Similarity=0.236  Sum_probs=75.2

Q ss_pred             CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      .+.++.+|||||||+|.++..     .+..+|+++|+++.+++.|+++       +++++.+|+.......+.||+|++.
T Consensus        73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~  152 (212)
T PRK13942         73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT  152 (212)
T ss_pred             CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence            467889999999999997532     3457999999999999999886       5789999988766567899999998


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..+.+++         ..+.+.|||||++++...
T Consensus       153 ~~~~~~~---------~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        153 AAGPDIP---------KPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             CCcccch---------HHHHHhhCCCcEEEEEEc
Confidence            7765442         346678999999988753

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.22  E-value=5.5e-11  Score=105.31  Aligned_cols=96  Identities=14%  Similarity=0.193  Sum_probs=75.4

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.++.+|||||||+|.++.    ..++.+|+++|+++.+++.|+++       +++++.+|+. .++ .+.||+|++..
T Consensus        28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~  105 (187)
T PRK08287         28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGG  105 (187)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECC
Confidence            45678899999999999743    35678999999999999999874       4678888764 233 35799999976


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ..++      ...++..+.++|+|||++++.....
T Consensus       106 ~~~~------~~~~l~~~~~~Lk~gG~lv~~~~~~  134 (187)
T PRK08287        106 SGGN------LTAIIDWSLAHLHPGGRLVLTFILL  134 (187)
T ss_pred             CccC------HHHHHHHHHHhcCCCeEEEEEEecH
Confidence            5443      3567899999999999999876543

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.21  E-value=9.4e-11  Score=106.20  Aligned_cols=93  Identities=24%  Similarity=0.254  Sum_probs=73.9

Q ss_pred             CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      .+.++.+|||||||+|.++..     .+...|+++|+++.+++.|+++       +++++.+|+.........||+|++.
T Consensus        74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~  153 (215)
T TIGR00080        74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT  153 (215)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence            467889999999999997542     3346799999999999999876       5788999987755445789999988


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ....++         ...+.+.|+|||++++..-
T Consensus       154 ~~~~~~---------~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       154 AAGPKI---------PEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             CCcccc---------cHHHHHhcCcCcEEEEEEc
Confidence            765544         3457789999999998753

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.20  E-value=9.4e-11  Score=113.02  Aligned_cols=105  Identities=26%  Similarity=0.276  Sum_probs=82.9

Q ss_pred             hCCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      ..+.++.+|||+|||+|.++.  ...+..++|+|+++.|++.|+.+       ++.+..+|+.++|++++.||+|++..-
T Consensus       178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP  257 (329)
T TIGR01177       178 ARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP  257 (329)
T ss_pred             hCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence            356788999999999999753  24577999999999999988875       357899999999988889999999532


Q ss_pred             h------hhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          148 L------HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       148 l------~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .      ......+....++.++.++|+|||++++.....
T Consensus       258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence            1      111111225789999999999999999887653

This family is found exclusively in the Archaea.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.18  E-value=4.9e-11  Score=102.82  Aligned_cols=139  Identities=18%  Similarity=0.235  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHhhcccccccc--------ccChHHHHHHHh------CCCCC-CEEEEECCcccccccc--CC--CcEE
Q 018606           44 ELEKKYVHRVYDAIAPHFSSTR--------FAKWPKVATFLN------SLPSG-SLVLDAGCGNGKYLGL--NP--DCFF  104 (353)
Q Consensus        44 ~~e~~~v~~~yd~~a~~y~~~~--------~~~~~~~~~~l~------~l~~~-~~VLDvGCG~G~~~~~--~~--~~~v  104 (353)
                      .-.++|+.+.|+.--..|....        .....++..++.      .+... .+|||+|||+|.++..  ..  ...+
T Consensus        15 LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L   94 (227)
T KOG1271|consen   15 LGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKL   94 (227)
T ss_pred             cchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCc
Confidence            3457899999988776665311        111123333332      12333 3999999999998742  22  2359


Q ss_pred             EEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhhhhcC-----ChhHHHHHHHHHHhccccC
Q 018606          105 VGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS-----TESRRKKAIEELVRVVKKG  171 (353)
Q Consensus       105 ~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~-----~~e~~~~~l~el~rvLkpg  171 (353)
                      +|+|.|+.+++.|+..        .|+|.+.|+..-.+..+.||+|+--+++..+.     ...++...+..+.+.|+||
T Consensus        95 ~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~  174 (227)
T KOG1271|consen   95 TGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPG  174 (227)
T ss_pred             cccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCC
Confidence            9999999999988764        28999999999778889999999987766543     2233466789999999999


Q ss_pred             cEEEEEEcCCC
Q 018606          172 SLVLITVWAVE  182 (353)
Q Consensus       172 G~lli~~~~~~  182 (353)
                      |+++|+.-+..
T Consensus       175 gifvItSCN~T  185 (227)
T KOG1271|consen  175 GIFVITSCNFT  185 (227)
T ss_pred             cEEEEEecCcc
Confidence            99999975544

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.17  E-value=2.4e-10  Score=111.51  Aligned_cols=104  Identities=22%  Similarity=0.245  Sum_probs=78.5

Q ss_pred             HHhCCCC--CCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCC
Q 018606           75 FLNSLPS--GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDF  138 (353)
Q Consensus        75 ~l~~l~~--~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l~~~~~~  138 (353)
                      ++..++.  +.+|||+|||+|.+..    ..|..+|+++|.|+.|++.|+++          +++++..|+... ++..+
T Consensus       220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~  298 (378)
T PRK15001        220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFR  298 (378)
T ss_pred             HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCC
Confidence            4444433  4699999999999742    36788999999999999999875          246777777542 34568


Q ss_pred             ccEEEechhhhhcC--ChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          139 GDAAISIAVLHHLS--TESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       139 fD~Vi~~~vl~h~~--~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ||+|+|+-.+|...  +.....+++..+.++|+|||.+++...
T Consensus       299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            99999987665432  222256889999999999999999964

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.16  E-value=7.6e-11  Score=114.74  Aligned_cols=98  Identities=21%  Similarity=0.313  Sum_probs=78.5

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC--CCCCCCccEEEechh
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL--PYRSDFGDAAISIAV  147 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l--~~~~~~fD~Vi~~~v  147 (353)
                      .+..+||||||+|.++.    ..|+..++|+|++..|++.|.++       ++.++++|+..+  .++++++|.|++...
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP  201 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP  201 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence            45699999999999753    37889999999999999888765       678999998764  477899999998765


Q ss_pred             hhhcCChhHH---HHHHHHHHhccccCcEEEEEE
Q 018606          148 LHHLSTESRR---KKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       148 l~h~~~~e~~---~~~l~el~rvLkpgG~lli~~  178 (353)
                      ..|.....|+   ..++.++.|+|+|||.+.+.+
T Consensus       202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T  235 (390)
T PRK14121        202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT  235 (390)
T ss_pred             CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence            4443332111   579999999999999999876

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.16  E-value=2.5e-11  Score=98.67  Aligned_cols=99  Identities=27%  Similarity=0.408  Sum_probs=76.5

Q ss_pred             CCEEEEECCcccccccc--CC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCCccEEEechhh
Q 018606           82 GSLVLDAGCGNGKYLGL--NP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAISIAVL  148 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~~--~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~--~~~~~fD~Vi~~~vl  148 (353)
                      |.+|||+|||+|.++..  .. ...++|+|+++..++.++.+        .++++++|+....  +++++||+|+++--.
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            56899999999997542  22 58999999999999999986        4689999998865  778999999997655


Q ss_pred             hhcCC-----hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          149 HHLST-----ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       149 ~h~~~-----~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .....     ......+++++.++|||||.+++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            43211     112467899999999999999998753

...

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.15  E-value=2.4e-10  Score=102.20  Aligned_cols=98  Identities=19%  Similarity=0.234  Sum_probs=75.8

Q ss_pred             CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~~~~~~fD~Vi  143 (353)
                      .+.++.+|||+|||+|.++.    . .++.+|+++|+++.|++.++++        ++.++.+|+.+. +...+.||+|+
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~  116 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF  116 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence            46788999999999998743    2 3557999999999999988765        357788888763 33346899999


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +...   ...   +..++.++.++|+|||++++.....
T Consensus       117 ~~~~---~~~---~~~~l~~~~~~LkpgG~lv~~~~~~  148 (198)
T PRK00377        117 IGGG---SEK---LKEIISASWEIIKKGGRIVIDAILL  148 (198)
T ss_pred             ECCC---ccc---HHHHHHHHHHHcCCCcEEEEEeecH
Confidence            8542   222   5789999999999999999866543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.13  E-value=2.7e-10  Score=107.90  Aligned_cols=97  Identities=20%  Similarity=0.191  Sum_probs=72.7

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc----C----CeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      ..++.+|||+|||+|.++..   ....+|+|+|+++.|++.|+++    +    +.+...+.  .+...+.||+|+++..
T Consensus       157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~  234 (288)
T TIGR00406       157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANIL  234 (288)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecC
Confidence            45789999999999987532   3335899999999999999886    2    23344442  2334678999999765


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .++      ...++.++.++|||||.++++.+..++
T Consensus       235 ~~~------l~~ll~~~~~~LkpgG~li~sgi~~~~  264 (288)
T TIGR00406       235 AEV------IKELYPQFSRLVKPGGWLILSGILETQ  264 (288)
T ss_pred             HHH------HHHHHHHHHHHcCCCcEEEEEeCcHhH
Confidence            432      457899999999999999998765443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.12  E-value=5.7e-10  Score=107.93  Aligned_cols=97  Identities=24%  Similarity=0.255  Sum_probs=76.6

Q ss_pred             CCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606           82 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHL  151 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~  151 (353)
                      ..+|||+|||+|.+..    ..+...|+++|+|+.|++.|+++    +  .+++.+|+...  ..+.||+|+++..+|+.
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g  274 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDG  274 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCC
Confidence            4589999999999753    35778999999999999999875    2  45677776552  25789999999888863


Q ss_pred             CC--hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          152 ST--ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       152 ~~--~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ..  ......++.++.+.|+|||.++|....
T Consensus       275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             ccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            32  223578999999999999999998644

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.12  E-value=2.5e-10  Score=101.17  Aligned_cols=103  Identities=21%  Similarity=0.274  Sum_probs=71.9

Q ss_pred             ccChHHHHHHHhCCCCCCEEEEECCccccccccC-CCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEe
Q 018606           66 FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLN-PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        66 ~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~~-~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      ..+...++..+...++...|.|+|||.+.++... .+..|.-.|+-..        +-.+..+|+.++|+++++.|++|+
T Consensus        57 ~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~--------n~~Vtacdia~vPL~~~svDv~Vf  128 (219)
T PF05148_consen   57 VNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP--------NPRVTACDIANVPLEDESVDVAVF  128 (219)
T ss_dssp             S-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-S--------STTEEES-TTS-S--TT-EEEEEE
T ss_pred             CCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCC--------CCCEEEecCccCcCCCCceeEEEE
Confidence            4555678888888888889999999999998754 4568999998653        456899999999999999999999


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +.+|....    ...+|.|..|+|||||.|.|..-.
T Consensus       129 cLSLMGTn----~~~fi~EA~RvLK~~G~L~IAEV~  160 (219)
T PF05148_consen  129 CLSLMGTN----WPDFIREANRVLKPGGILKIAEVK  160 (219)
T ss_dssp             ES---SS-----HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             EhhhhCCC----cHHHHHHHHheeccCcEEEEEEec
Confidence            88876544    688999999999999999999644

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.11  E-value=2.6e-10  Score=109.57  Aligned_cols=103  Identities=25%  Similarity=0.297  Sum_probs=76.1

Q ss_pred             CCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-----------------CCeEEEeeCCCCC----CC-
Q 018606           81 SGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNLP----YR-  135 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~-----------------~i~~~~~D~~~l~----~~-  135 (353)
                      ++.+|||+|||-|.-+..   ..-..++|+|+|...|+.|+++                 ...|+.+|.....    +. 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            789999999999987642   3445999999999999999886                 1245777776421    23 


Q ss_pred             -CCCccEEEechhhhhc-CChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          136 -SDFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       136 -~~~fD~Vi~~~vl~h~-~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                       ...||+|-|..+||+. .+.+....+|..+...|+|||+++.+++..+.
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~  191 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDE  191 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence             3599999999999995 45566667999999999999999999987543

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PHA03411 putative methyltransferase; Provisional

Probab=99.11  E-value=6.5e-10  Score=103.27  Aligned_cols=132  Identities=15%  Similarity=0.083  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhhccccccccccChHHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-
Q 018606           46 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-  120 (353)
Q Consensus        46 e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-  120 (353)
                      +++.+-+.|....-+-...-+.+..-+..++.....+.+|||+|||+|.+..    ..++.+|+|+|+++.|++.|+++ 
T Consensus        29 ~~~~v~~~~~g~~~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~  108 (279)
T PHA03411         29 EKEFCYNNYHGDGLGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL  108 (279)
T ss_pred             cHHHHHHhcccccccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC
Confidence            5566666665543111111233443333444344456799999999998743    23457999999999999999987 


Q ss_pred             -CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhH-----------------HHHHHHHHHhccccCcEEEEEE
Q 018606          121 -GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR-----------------RKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       121 -~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~-----------------~~~~l~el~rvLkpgG~lli~~  178 (353)
                       +++++++|+..+.. ...||+|+++-.++|+...++                 ....+.....+|+|+|.+.+..
T Consensus       109 ~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y  183 (279)
T PHA03411        109 PEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY  183 (279)
T ss_pred             cCCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence             68899999988753 468999999888888654322                 1356777888999999777774

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.10  E-value=5.7e-10  Score=99.55  Aligned_cols=98  Identities=18%  Similarity=0.221  Sum_probs=73.6

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-l~~~~~~fD~Vi~~  145 (353)
                      .+.++.+|||+|||+|.++.    ..++..|+|+|+++.|++.|+++       +++++.+|+.. ++.-...+|.++..
T Consensus        37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~  116 (196)
T PRK07402         37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE  116 (196)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence            44678899999999999743    25678999999999999999875       46788888754 22212345666543


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .    ...   ...++.++.++|+|||++++..+..+
T Consensus       117 ~----~~~---~~~~l~~~~~~LkpgG~li~~~~~~~  146 (196)
T PRK07402        117 G----GRP---IKEILQAVWQYLKPGGRLVATASSLE  146 (196)
T ss_pred             C----CcC---HHHHHHHHHHhcCCCeEEEEEeecHH
Confidence            2    122   56899999999999999999987644

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.09  E-value=3.4e-10  Score=105.50  Aligned_cols=116  Identities=23%  Similarity=0.326  Sum_probs=90.6

Q ss_pred             cChHHHHHHHhCCCCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHc-------------CCeEEEeeCC
Q 018606           67 AKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-------------GHEVLVADAV  130 (353)
Q Consensus        67 ~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~-------------~i~~~~~D~~  130 (353)
                      ..|-+-..+-...+++..++|+|||-|.-+..  ..+ ..++|+|++...++.|+++             ...|+.+|..
T Consensus       103 NNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~  182 (389)
T KOG1975|consen  103 NNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF  182 (389)
T ss_pred             hHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence            44444333333567889999999999986643  233 4899999999999999987             1478899987


Q ss_pred             C------CCCCCCCccEEEechhhhh-cCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          131 N------LPYRSDFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       131 ~------l~~~~~~fD~Vi~~~vl~h-~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .      +++++.+||+|-|-.++|+ +.+.+....+|..+.+.|+|||.++-+++..+
T Consensus       183 ~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd  241 (389)
T KOG1975|consen  183 KERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD  241 (389)
T ss_pred             hhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence            5      4455666999999999998 56677788899999999999999999987643

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.09  E-value=3.1e-10  Score=99.08  Aligned_cols=99  Identities=25%  Similarity=0.363  Sum_probs=75.2

Q ss_pred             CCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc----C---CeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           81 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      ++.+|||+|||+|.+.    ...+...|+++|+++.+++.++++    +   ++++..|.... .+++.||+|+++--++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP~~  109 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPPFH  109 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEEEEccchh
Confidence            5679999999999864    236777899999999999999886    2   67888888663 3378999999986654


Q ss_pred             hcCC--hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          150 HLST--ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       150 h~~~--~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .-..  ......++.+..+.|+|||.+++..-.
T Consensus       110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen  110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS  142 (170)
T ss_dssp             TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             cccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence            3332  122578899999999999999876543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=99.07  E-value=6.6e-10  Score=101.25  Aligned_cols=101  Identities=16%  Similarity=0.079  Sum_probs=73.7

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      +.++.+|||+|||+|.++..   ....+++|+|+++.+++.++++      ++.++.+|+... ++++.||+|+++--..
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYV  112 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCC
Confidence            46778999999999997532   2224999999999999988875      356778887653 4567899999974322


Q ss_pred             hcCC------------------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          150 HLST------------------ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       150 h~~~------------------~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ....                  .+....++.++.++|||||++++..-.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            1110                  011356788999999999999986544

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.06  E-value=1.2e-09  Score=100.56  Aligned_cols=97  Identities=26%  Similarity=0.343  Sum_probs=73.6

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech---
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA---  146 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~---  146 (353)
                      .+.+|||+|||+|.++.    ..+...++|+|+++.+++.|+++       ++.++.+|+.. ++++++||+|+++-   
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~  165 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI  165 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence            34599999999999753    35677999999999999999875       37889999876 45578999999843   


Q ss_pred             ---hhhhcCChh-----------------HHHHHHHHHHhccccCcEEEEEE
Q 018606          147 ---VLHHLSTES-----------------RRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       147 ---vl~h~~~~e-----------------~~~~~l~el~rvLkpgG~lli~~  178 (353)
                         .++++....                 ....++.++.++|+|||.+++..
T Consensus       166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence               222222111                 02467899999999999998865

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14968 putative methyltransferase; Provisional

Probab=99.06  E-value=1.2e-09  Score=95.95  Aligned_cols=100  Identities=23%  Similarity=0.294  Sum_probs=75.3

Q ss_pred             CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------C--CeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------G--HEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .++.+|||+|||+|.++..  ..+..++|+|+|+.+++.++++       +  +.++.+|+.. ++.+..||+|++...+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~  100 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY  100 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence            5678999999999997542  3378999999999999998764       1  7788888776 3445689999986543


Q ss_pred             hhcC------------------ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          149 HHLS------------------TESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       149 ~h~~------------------~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .+..                  .......+++++.++|+|||.+++....
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~  150 (188)
T PRK14968        101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS  150 (188)
T ss_pred             CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            2211                  1222466899999999999999887654

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.05  E-value=7.1e-10  Score=85.88  Aligned_cols=92  Identities=36%  Similarity=0.509  Sum_probs=75.3

Q ss_pred             EEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCCccEEEechhhhhcC
Q 018606           84 LVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        84 ~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~-~~~~fD~Vi~~~vl~h~~  152 (353)
                      +|||+|||+|.++..   .....++++|+++.++..+++.       .+.++..|+.+... ..+.||+|++..+++++ 
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~-   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL-   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence            489999999997542   3567999999999999888722       46888888887653 56789999999999884 


Q ss_pred             ChhHHHHHHHHHHhccccCcEEEEE
Q 018606          153 TESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                       .+....++..+.+.|+|||.+++.
T Consensus        80 -~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 -VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence             222788999999999999999886

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.05  E-value=1e-09  Score=99.12  Aligned_cols=93  Identities=18%  Similarity=0.115  Sum_probs=72.3

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .+.++.+|||||||+|.++..  .....++++|+++.+++.|+++       ++++..+|........+.||+|++...+
T Consensus        75 ~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  154 (212)
T PRK00312         75 ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA  154 (212)
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence            456788999999999986532  1124899999999999999875       4788889876533334789999998876


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      +++         ...+.+.|+|||++++...
T Consensus       155 ~~~---------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        155 PEI---------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             hhh---------hHHHHHhcCCCcEEEEEEc
Confidence            554         2346789999999999876

>PTZ00146 fibrillarin; Provisional

Probab=99.04  E-value=1.2e-09  Score=102.46  Aligned_cols=95  Identities=17%  Similarity=0.214  Sum_probs=72.4

Q ss_pred             CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHH----HHHHHHHc-CCeEEEeeCCCC---CCCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPS----LIKICVDR-GHEVLVADAVNL---PYRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~----~l~~a~~~-~i~~~~~D~~~l---~~~~~~fD~Vi~  144 (353)
                      .+.++.+|||+|||+|.++..     .+...|+++|+++.    |++.++++ ++.++.+|+...   .....+||+|++
T Consensus       129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence            357899999999999997642     33568999999986    56666654 899999998642   223457999999


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      ...   .++  ....++.++.++|||||.|+|.
T Consensus       209 Dva---~pd--q~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        209 DVA---QPD--QARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             eCC---Ccc--hHHHHHHHHHHhccCCCEEEEE
Confidence            764   232  2456777899999999999995

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.02  E-value=6.9e-10  Score=102.92  Aligned_cols=94  Identities=23%  Similarity=0.326  Sum_probs=67.2

Q ss_pred             CCCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHL  151 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~  151 (353)
                      +.++.+|||+|||+|.++..  ..+ ..|+|+|+|+.+++.|+++    ++.    +...++..+.+||+|+++...+. 
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~~-  191 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILANP-  191 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHHH-
Confidence            46789999999999986432  223 3699999999999999876    331    11112222237999998643221 


Q ss_pred             CChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          152 STESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       152 ~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                           ...++.++.++|||||+++++.+..+
T Consensus       192 -----~~~l~~~~~~~LkpgG~lilsgi~~~  217 (250)
T PRK00517        192 -----LLELAPDLARLLKPGGRLILSGILEE  217 (250)
T ss_pred             -----HHHHHHHHHHhcCCCcEEEEEECcHh
Confidence                 45789999999999999999876543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.00  E-value=8e-10  Score=99.62  Aligned_cols=100  Identities=24%  Similarity=0.277  Sum_probs=73.3

Q ss_pred             HHHHHHhCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCC
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDF  138 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~  138 (353)
                      .+...+ .+.+|.+|||||||+|.++..     .+...|+++|+.+.+++.|+++       ++.++.+|..........
T Consensus        63 ~~l~~L-~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ap  141 (209)
T PF01135_consen   63 RMLEAL-DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAP  141 (209)
T ss_dssp             HHHHHT-TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-S
T ss_pred             HHHHHH-hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCC
Confidence            334444 378999999999999998642     4566899999999999999887       678999998764444578


Q ss_pred             ccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          139 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       139 fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ||.|++.+....++         ..+.+.|++||++++-.-.
T Consensus       142 fD~I~v~~a~~~ip---------~~l~~qL~~gGrLV~pi~~  174 (209)
T PF01135_consen  142 FDRIIVTAAVPEIP---------EALLEQLKPGGRLVAPIGQ  174 (209)
T ss_dssp             EEEEEESSBBSS-----------HHHHHTEEEEEEEEEEESS
T ss_pred             cCEEEEeeccchHH---------HHHHHhcCCCcEEEEEEcc
Confidence            99999988765443         2366789999999988753

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.99  E-value=2.9e-09  Score=104.49  Aligned_cols=105  Identities=22%  Similarity=0.245  Sum_probs=75.9

Q ss_pred             HHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCC-CCCCccEEE
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPY-RSDFGDAAI  143 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~-~~~~fD~Vi  143 (353)
                      .+..++++.+|||+|||+|.++.    ..++..++|+|+|+.|++.|+++      +++++++|+....+ ..++||+|+
T Consensus       245 aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIV  324 (423)
T PRK14966        245 VLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIV  324 (423)
T ss_pred             hhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEE
Confidence            33455667799999999998743    35778999999999999999886      47889999866433 245799999


Q ss_pred             echhh-----hhcCC-----------------hhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          144 SIAVL-----HHLST-----------------ESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       144 ~~~vl-----~h~~~-----------------~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      |+--.     .++..                 .+-...++..+.+.|+|||.+++...
T Consensus       325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG  382 (423)
T PRK14966        325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG  382 (423)
T ss_pred             ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            94311     00100                 01134677788899999999887663

>PRK04457 spermidine synthase; Provisional

Probab=98.99  E-value=1.5e-09  Score=101.41  Aligned_cols=104  Identities=15%  Similarity=0.289  Sum_probs=77.6

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCCccEEEec
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAISI  145 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~~~~~~fD~Vi~~  145 (353)
                      .+++.+|||||||+|.++.    ..++.+++++|+++.+++.|++.        +++++.+|+... .-..+.||+|++.
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            4556799999999999753    36788999999999999999975        367888997653 2224689999985


Q ss_pred             hhh-hhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          146 AVL-HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       146 ~vl-~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ..- ...+......++++++.++|+|||++++..|...
T Consensus       144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~  181 (262)
T PRK04457        144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD  181 (262)
T ss_pred             CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence            311 1111111126899999999999999999887654

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.99  E-value=3.1e-09  Score=96.44  Aligned_cols=102  Identities=21%  Similarity=0.262  Sum_probs=82.2

Q ss_pred             ccChHHHHHHHhCCCCCCEEEEECCccccccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEec
Q 018606           66 FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        66 ~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      ..+...++..|...+....|.|+|||-+.++.. ....|+.+|+-+.        +-+++.+|+.++|+++++.|+++++
T Consensus       165 ~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~--------~~~V~~cDm~~vPl~d~svDvaV~C  235 (325)
T KOG3045|consen  165 ENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS-ERHKVHSFDLVAV--------NERVIACDMRNVPLEDESVDVAVFC  235 (325)
T ss_pred             CChHHHHHHHHHhCcCceEEEecccchhhhhhc-cccceeeeeeecC--------CCceeeccccCCcCccCcccEEEee
Confidence            344556777777777778999999999999863 2347888887432        5689999999999999999999998


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .+|....    ...++.|+.|+|++||.+.|....
T Consensus       236 LSLMgtn----~~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  236 LSLMGTN----LADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             Hhhhccc----HHHHHHHHHHHhccCceEEEEehh
Confidence            7776443    688999999999999999998644

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.97  E-value=2.7e-09  Score=100.83  Aligned_cols=99  Identities=15%  Similarity=0.159  Sum_probs=73.6

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech--
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA--  146 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~--  146 (353)
                      ++.+|||+|||+|.++.    ..++..|+|+|+|+.+++.|+++        ++.++.+|+.. ++++++||+|+++-  
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY  199 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence            45799999999999753    35678999999999999999876        36789999864 23456899999851  


Q ss_pred             ----hhhhcCC----------------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 ----VLHHLST----------------ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 ----vl~h~~~----------------~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                          .+.++..                .+....++.++.++|+|||++++.+..
T Consensus       200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~  253 (284)
T TIGR03533       200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN  253 (284)
T ss_pred             CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence                1111110                012357789999999999999988753

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.96  E-value=5.5e-09  Score=104.27  Aligned_cols=106  Identities=22%  Similarity=0.281  Sum_probs=78.7

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC--CCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~--~~~~~fD~Vi~~  145 (353)
                      ...+|.+|||+|||+|..+.    ..++..|+|+|+++.+++.++++      .+.++++|+..++  +..++||.|++.
T Consensus       241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D  320 (427)
T PRK10901        241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD  320 (427)
T ss_pred             CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence            45688999999999998643    23447999999999999999876      3578889998754  345789999953


Q ss_pred             h------hhh------hcCChhH-------HHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          146 A------VLH------HLSTESR-------RKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       146 ~------vl~------h~~~~e~-------~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .      ++.      +....++       ...+|..+.++|||||++++++.+...
T Consensus       321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~  377 (427)
T PRK10901        321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP  377 (427)
T ss_pred             CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            2      221      1122211       247899999999999999998876544

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.96  E-value=3.7e-09  Score=106.01  Aligned_cols=107  Identities=20%  Similarity=0.214  Sum_probs=79.5

Q ss_pred             CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      ...+|.+|||+|||+|..+.    . ..+..|+|+|+|+.+++.++++       +++++.+|+..++ ++++||+|++.
T Consensus       247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D  325 (445)
T PRK14904        247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLD  325 (445)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEc
Confidence            45678999999999997432    2 3456999999999999998876       3678889988765 45789999962


Q ss_pred             ------hhhh------hcCChh-------HHHHHHHHHHhccccCcEEEEEEcCCCccc
Q 018606          146 ------AVLH------HLSTES-------RRKKAIEELVRVVKKGSLVLITVWAVEQED  185 (353)
Q Consensus       146 ------~vl~------h~~~~e-------~~~~~l~el~rvLkpgG~lli~~~~~~~~~  185 (353)
                            +++.      +..+.+       ....+|.++.+.|||||++++.+.+.....
T Consensus       326 ~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~E  384 (445)
T PRK14904        326 APCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEE  384 (445)
T ss_pred             CCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence                  1221      111111       134689999999999999999998876543

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.96  E-value=4.3e-09  Score=99.47  Aligned_cols=97  Identities=19%  Similarity=0.226  Sum_probs=73.9

Q ss_pred             CEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec-----
Q 018606           83 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI-----  145 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~-----  145 (353)
                      .+|||+|||+|.++.    ..++..|+|+|+|+.+++.|+++        +++++.+|+.. +++...||+|+++     
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~  194 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID  194 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence            689999999999743    35678999999999999999885        27889999876 3444589999995     


Q ss_pred             --------hhhhhcCC---------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          146 --------AVLHHLST---------ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       146 --------~vl~h~~~---------~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                              .++.|-+.         .+....++.++.+.|+|||.+++.+..
T Consensus       195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~  246 (284)
T TIGR00536       195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN  246 (284)
T ss_pred             cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence                    12233221         112567899999999999999888754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.95  E-value=3.1e-09  Score=97.76  Aligned_cols=101  Identities=23%  Similarity=0.289  Sum_probs=82.9

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~  152 (353)
                      .+.+..+|+|||+|+|.++.    ..|+.+++.+|+ +..++.+++. +++++.+|+. -+++.  +|+++...+||+++
T Consensus        97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~  172 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS  172 (241)
T ss_dssp             TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred             cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence            35566799999999999863    489999999998 8888887776 7899999998 66665  99999999999999


Q ss_pred             ChhHHHHHHHHHHhccccC--cEEEEEEcCCCc
Q 018606          153 TESRRKKAIEELVRVVKKG--SLVLITVWAVEQ  183 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpg--G~lli~~~~~~~  183 (353)
                      +.+ ...+|+++++.|+||  |+|+|..+-...
T Consensus       173 d~~-~~~iL~~~~~al~pg~~g~llI~e~~~~~  204 (241)
T PF00891_consen  173 DED-CVKILRNAAAALKPGKDGRLLIIEMVLPD  204 (241)
T ss_dssp             HHH-HHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred             hHH-HHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence            765 789999999999999  999999766443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.95  E-value=5.5e-09  Score=104.46  Aligned_cols=106  Identities=21%  Similarity=0.260  Sum_probs=81.2

Q ss_pred             CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC----CCCCCccE
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP----YRSDFGDA  141 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~----~~~~~fD~  141 (353)
                      ...+|.+|||+|||+|..+.    . .....|+++|+++.+++.++++       ++.++.+|+..++    +..++||.
T Consensus       249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~  328 (434)
T PRK14901        249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR  328 (434)
T ss_pred             CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence            45678999999999998642    2 3456999999999999998875       4678889998775    44678999


Q ss_pred             EEec------hhhhhcCCh------hH-------HHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          142 AISI------AVLHHLSTE------SR-------RKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       142 Vi~~------~vl~h~~~~------e~-------~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      |++.      +++++-++.      ++       ..++|.++.++|||||+++.++.+...
T Consensus       329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~  389 (434)
T PRK14901        329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP  389 (434)
T ss_pred             EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            9973      355544331      11       357899999999999999988876644

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.94  E-value=7.5e-09  Score=90.43  Aligned_cols=100  Identities=16%  Similarity=0.131  Sum_probs=81.9

Q ss_pred             CCCCCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.++.+++|||||+|...    ...|..+|+++|.++++++..+++       ++.++.+|+...-....++|+|+..+
T Consensus        31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG  110 (187)
T COG2242          31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG  110 (187)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence            5678999999999999964    347889999999999999888776       67889998876422223799999988


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      . -   +   ...+|+.+...|||||++++..-..+..
T Consensus       111 g-~---~---i~~ile~~~~~l~~ggrlV~naitlE~~  141 (187)
T COG2242         111 G-G---N---IEEILEAAWERLKPGGRLVANAITLETL  141 (187)
T ss_pred             C-C---C---HHHHHHHHHHHcCcCCeEEEEeecHHHH
Confidence            7 2   2   5678999999999999999998776653

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.93  E-value=4.7e-09  Score=104.75  Aligned_cols=110  Identities=23%  Similarity=0.304  Sum_probs=81.8

Q ss_pred             HhCCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCCccEE
Q 018606           76 LNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAA  142 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~-~~~~~fD~V  142 (353)
                      +..+.+|.+|||+|||+|..+.    . .++..|+++|+++.+++.++++       ++.+.++|+..++ +..++||.|
T Consensus       232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~V  311 (431)
T PRK14903        232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRI  311 (431)
T ss_pred             HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEE
Confidence            3456788999999999997532    2 3567999999999999999876       3578889988776 446789999


Q ss_pred             Eec------hhhhhcCC------h-------hHHHHHHHHHHhccccCcEEEEEEcCCCccc
Q 018606          143 ISI------AVLHHLST------E-------SRRKKAIEELVRVVKKGSLVLITVWAVEQED  185 (353)
Q Consensus       143 i~~------~vl~h~~~------~-------e~~~~~l~el~rvLkpgG~lli~~~~~~~~~  185 (353)
                      ++.      +++..-++      .       ....++|..+.+.|||||.++.++.+...+.
T Consensus       312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eE  373 (431)
T PRK14903        312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEE  373 (431)
T ss_pred             EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhh
Confidence            972      22221111      0       0136779999999999999999998876543

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.93  E-value=4.1e-09  Score=100.58  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=72.8

Q ss_pred             CEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech----
Q 018606           83 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA----  146 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~----  146 (353)
                      .+|||+|||+|.++.    ..++..|+|+|+|+.+++.|+++        +++++.+|+.. +++.++||+|+++-    
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence            689999999999753    35678999999999999999876        26789999765 23456899999851    


Q ss_pred             --hh-------hhcCC---------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 --VL-------HHLST---------ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 --vl-------~h~~~---------~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                        .+       +|-+.         .+....++.++.++|+|||++++....
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~  265 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN  265 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence              11       11111         122457899999999999999987643

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.92  E-value=1.2e-08  Score=94.66  Aligned_cols=99  Identities=17%  Similarity=0.194  Sum_probs=72.4

Q ss_pred             CCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCC-C-CCCCCccEEEech-----
Q 018606           82 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNL-P-YRSDFGDAAISIA-----  146 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l-~-~~~~~fD~Vi~~~-----  146 (353)
                      +.+|||+|||+|.++.    ..++..++|+|+|+.+++.|+++    +++++++|+... + ...+.||+|+++-     
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT  166 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence            4589999999998742    35677999999999999999876    578999998753 2 1135799999853     


Q ss_pred             -hhhhcCCh-----------------hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 -VLHHLSTE-----------------SRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 -vl~h~~~~-----------------e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                       .+..+++.                 +-...++..+.++|+|||++++..-.
T Consensus       167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~  218 (251)
T TIGR03704       167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE  218 (251)
T ss_pred             hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence             12222211                 11347778888999999999988653

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.91  E-value=6.8e-09  Score=97.09  Aligned_cols=110  Identities=20%  Similarity=0.173  Sum_probs=80.2

Q ss_pred             HHhCCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEE
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      .+..+.+|.+|||+|||+|..+.    . .....|+++|+++.+++.++++       ++.++..|+..++...+.||+|
T Consensus        65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~V  144 (264)
T TIGR00446        65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAI  144 (264)
T ss_pred             HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEE
Confidence            34456788999999999999652    2 2346999999999999998876       4578888887766555679999


Q ss_pred             Eech------hhhhcCC------hh-------HHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          143 ISIA------VLHHLST------ES-------RRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       143 i~~~------vl~h~~~------~e-------~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      ++..      ++.+-++      .+       ...++|..+.+.|||||+++.++-+....
T Consensus       145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~  205 (264)
T TIGR00446       145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE  205 (264)
T ss_pred             EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence            9732      2222111      11       13569999999999999999887666544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.91  E-value=7.4e-09  Score=99.21  Aligned_cols=92  Identities=17%  Similarity=0.196  Sum_probs=71.3

Q ss_pred             CCCCCCEEEEECCcccccccc----C-CCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~----~-~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      .+.++.+|||||||+|.++..    . ....|+|+|+++.|++.|+++       ++.++.+|+...+...+.||+|++.
T Consensus        77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~  156 (322)
T PRK13943         77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT  156 (322)
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence            356788999999999997532    2 235799999999999998874       4678889987765555789999998


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ..+.+++         ..+.+.|+|||++++..
T Consensus       157 ~g~~~ip---------~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        157 VGVDEVP---------ETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             CchHHhH---------HHHHHhcCCCCEEEEEe
Confidence            7655442         23668899999988865

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.90  E-value=1e-08  Score=102.29  Aligned_cols=107  Identities=17%  Similarity=0.197  Sum_probs=78.7

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----CCe--E--EEeeCCCCCC--CCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----GHE--V--LVADAVNLPY--RSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----~i~--~--~~~D~~~l~~--~~~~fD~Vi  143 (353)
                      ...+|.+|||+|||+|..+.    ..+...|+|+|+++.+++.++++    ++.  +  ..+|....+.  ..++||.|+
T Consensus       235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl  314 (426)
T TIGR00563       235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL  314 (426)
T ss_pred             CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence            45678999999999997542    23467999999999999998876    442  3  4456554443  467899999


Q ss_pred             e------chhhhhcCCh------h-------HHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          144 S------IAVLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       144 ~------~~vl~h~~~~------e-------~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      +      .+++++.++.      +       ...++|.++.++|||||++++++.+....
T Consensus       315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~  374 (426)
T TIGR00563       315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE  374 (426)
T ss_pred             EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence            6      3456554431      1       13679999999999999999999887543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.88  E-value=1.2e-08  Score=95.45  Aligned_cols=99  Identities=26%  Similarity=0.300  Sum_probs=73.5

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech-
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA-  146 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~-  146 (353)
                      ..++.+|||+|||+|.++.    ..+...++|+|+|+.+++.|+++       ++.++.+|+... +..++||+|++.- 
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP  184 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP  184 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence            3466799999999998643    35678999999999999999875       478888888553 3357899999842 


Q ss_pred             -----hhhhcCC-----------------hhHHHHHHHHHHhccccCcEEEEEE
Q 018606          147 -----VLHHLST-----------------ESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       147 -----vl~h~~~-----------------~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                           .++.+..                 .+....++.++.++|+|||.+++..
T Consensus       185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence                 1111111                 1124578888999999999999864

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.87  E-value=1.1e-08  Score=93.58  Aligned_cols=93  Identities=19%  Similarity=0.213  Sum_probs=77.4

Q ss_pred             CCEEEEECCcccccccc-CCC-cEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHH
Q 018606           82 GSLVLDAGCGNGKYLGL-NPD-CFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK  159 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~~-~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~  159 (353)
                      ..++||||+|.|..+.. .+. ..|+++|.|+.|....+++|++++..|-  ..-.+..||+|.|.++|..-..   +..
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~--w~~~~~~fDvIscLNvLDRc~~---P~~  169 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDD--WQQTDFKFDVISCLNVLDRCDR---PLT  169 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhh--hhccCCceEEEeehhhhhccCC---HHH
Confidence            46899999999998754 222 3899999999999999999988765443  3333568999999999988777   789


Q ss_pred             HHHHHHhccccCcEEEEEEc
Q 018606          160 AIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       160 ~l~el~rvLkpgG~lli~~~  179 (353)
                      +|++|++.|+|+|++++.+-
T Consensus       170 LL~~i~~~l~p~G~lilAvV  189 (265)
T PF05219_consen  170 LLRDIRRALKPNGRLILAVV  189 (265)
T ss_pred             HHHHHHHHhCCCCEEEEEEE
Confidence            99999999999999998863

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=7.2e-09  Score=92.36  Aligned_cols=93  Identities=20%  Similarity=0.143  Sum_probs=76.4

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .+.++.+|||||||+|..+..  .-..+|+.+|+.+.+.+.|+++       ++.+.++|...---....||.|+..+..
T Consensus        69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa  148 (209)
T COG2518          69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAA  148 (209)
T ss_pred             CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeecc
Confidence            578899999999999998653  2223999999999999999986       6889999988754445899999999987


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..++.         .+.+.|++||++++-+-
T Consensus       149 ~~vP~---------~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         149 PEVPE---------ALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCH---------HHHHhcccCCEEEEEEc
Confidence            77764         25677899999999876

>PHA03412 putative methyltransferase; Provisional

Probab=98.86  E-value=2.7e-08  Score=90.61  Aligned_cols=128  Identities=17%  Similarity=0.113  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHhhccccc--cccccChHHHHHHH-hCCCCCCEEEEECCcccccccc-------CCCcEEEEEeCCHHHH
Q 018606           45 LEKKYVHRVYDAIAPHFS--STRFAKWPKVATFL-NSLPSGSLVLDAGCGNGKYLGL-------NPDCFFVGCDISPSLI  114 (353)
Q Consensus        45 ~e~~~v~~~yd~~a~~y~--~~~~~~~~~~~~~l-~~l~~~~~VLDvGCG~G~~~~~-------~~~~~v~gvD~S~~~l  114 (353)
                      .+++.+.+-|..-+-.-.  ...+-....++..+ .....+.+|||+|||+|.++..       .+...|+|+|+++.++
T Consensus        10 ~~~~f~~~n~~~~~~~~~~~~GqFfTP~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al   89 (241)
T PHA03412         10 EEKLFIIENFHEGAFTNNSELGAFFTPIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY   89 (241)
T ss_pred             HHHHHHHhhcccccccccccCCccCCCHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH
Confidence            456677666655332211  12222222333322 2233467999999999997531       2356999999999999


Q ss_pred             HHHHHc--CCeEEEeeCCCCCCCCCCccEEEechhhhhcC---------ChhHHHHHHHHHHhccccCcE
Q 018606          115 KICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS---------TESRRKKAIEELVRVVKKGSL  173 (353)
Q Consensus       115 ~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~---------~~e~~~~~l~el~rvLkpgG~  173 (353)
                      +.|+++  ++.++.+|+...++ +++||+||++--..-+.         ...-...++....+++++|+.
T Consensus        90 ~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412         90 KLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             HHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            999987  68899999987665 56899999954332111         112145688888897777664

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1e-08  Score=96.43  Aligned_cols=99  Identities=23%  Similarity=0.317  Sum_probs=72.3

Q ss_pred             CCCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc----CCe----EEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----GHE----VLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~----~i~----~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.+|.+|||+|||+|.++.  ..-| ..++|+|+.+..++.|+++    ++.    ....+....+ ..+.||+|+++-
T Consensus       159 ~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANI  237 (300)
T COG2264         159 LLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANI  237 (300)
T ss_pred             hhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehh
Confidence            34688999999999999854  2344 4799999999999999987    444    2222222222 236999999975


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                       |   .+.  ...+..++.+.|||||+++++-.-.++
T Consensus       238 -L---A~v--l~~La~~~~~~lkpgg~lIlSGIl~~q  268 (300)
T COG2264         238 -L---AEV--LVELAPDIKRLLKPGGRLILSGILEDQ  268 (300)
T ss_pred             -h---HHH--HHHHHHHHHHHcCCCceEEEEeehHhH
Confidence             2   222  568899999999999999999755444

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.84  E-value=1.5e-08  Score=92.93  Aligned_cols=102  Identities=20%  Similarity=0.207  Sum_probs=78.1

Q ss_pred             CCCCCCEEEEECCcccccc---c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGNGKYL---G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~---~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~--~~~~~fD~Vi  143 (353)
                      ..+...+|||+|||+|...   . ..+.+.++|+|+.+.|.+.|++.        +++++++|+.++.  ....+||+|+
T Consensus        41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii  120 (248)
T COG4123          41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII  120 (248)
T ss_pred             ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence            4445789999999999852   2 23558999999999999999986        6899999998864  3345799999


Q ss_pred             echhhh----------------hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVLH----------------HLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~----------------h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      |+--..                |...- ..+.+++...++|||||.+.+....
T Consensus       121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~-~le~~i~~a~~~lk~~G~l~~V~r~  172 (248)
T COG4123         121 CNPPYFKQGSRLNENPLRAIARHEITL-DLEDLIRAAAKLLKPGGRLAFVHRP  172 (248)
T ss_pred             eCCCCCCCccccCcChhhhhhhhhhcC-CHHHHHHHHHHHccCCCEEEEEecH
Confidence            943221                11111 1678899999999999999998654

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.83  E-value=9.3e-09  Score=91.79  Aligned_cols=96  Identities=20%  Similarity=0.220  Sum_probs=67.9

Q ss_pred             CCEEEEECCcccc--cc------c---c--CCCcEEEEEeCCHHHHHHHHHc----------------------------
Q 018606           82 GSLVLDAGCGNGK--YL------G---L--NPDCFFVGCDISPSLIKICVDR----------------------------  120 (353)
Q Consensus        82 ~~~VLDvGCG~G~--~~------~---~--~~~~~v~gvD~S~~~l~~a~~~----------------------------  120 (353)
                      .-+|+..||++|.  |.      .   .  ....+|+|+|+|+.+|+.|++-                            
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            3599999999998  21      1   1  1247999999999999999962                            


Q ss_pred             -------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          121 -------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       121 -------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                             .+.|...|+.+.+...+.||+|+|-+||.++.... +.++++.+++.|+|||.|++..
T Consensus       112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-QQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-HHHHHHHHGGGEEEEEEEEE-T
T ss_pred             EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-HHHHHHHHHHHcCCCCEEEEec
Confidence                   47889999988444568999999999999998655 6899999999999999998873

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.82  E-value=3e-08  Score=93.40  Aligned_cols=95  Identities=13%  Similarity=0.150  Sum_probs=75.8

Q ss_pred             CEEEEECCcccc--cc------cc----CCCcEEEEEeCCHHHHHHHHHc------------------------------
Q 018606           83 SLVLDAGCGNGK--YL------GL----NPDCFFVGCDISPSLIKICVDR------------------------------  120 (353)
Q Consensus        83 ~~VLDvGCG~G~--~~------~~----~~~~~v~gvD~S~~~l~~a~~~------------------------------  120 (353)
                      -+|+..||+||.  |.      ..    ....+|+|+|+|..+|+.|++-                              
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~  196 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV  196 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence            699999999998  21      11    1247899999999999999863                              


Q ss_pred             --------CCeEEEeeCCCCCCC-CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          121 --------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       121 --------~i~~~~~D~~~l~~~-~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                              .+.|.+.|+...+++ .+.||+|+|.+++.|+.... +.+++..+.+.|+|||+|++..
T Consensus       197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~-~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTT-QERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHH-HHHHHHHHHHHhCCCcEEEEeC
Confidence                    246677777765443 57899999999999997655 7899999999999999887763

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.81  E-value=9.7e-09  Score=89.47  Aligned_cols=94  Identities=17%  Similarity=0.228  Sum_probs=69.4

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHL  151 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~  151 (353)
                      +.++.+|||||||+|.++..  ..+.+++|+|+++.|++.++++     +++++.+|+.++++++..||.|+++--.+ +
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~-~   89 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYN-I   89 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcc-c
Confidence            45678999999999998642  3367999999999999999876     58899999999988777799998865433 3


Q ss_pred             CChhHHHHHHHHHHhc--cccCcEEEEEE
Q 018606          152 STESRRKKAIEELVRV--VKKGSLVLITV  178 (353)
Q Consensus       152 ~~~e~~~~~l~el~rv--LkpgG~lli~~  178 (353)
                      ..     ..+..+.+.  +.++|.+++..
T Consensus        90 ~~-----~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       90 ST-----PILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             HH-----HHHHHHHhcCCCcceEEEEEEH
Confidence            22     233333332  34677776653

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.81  E-value=2.1e-08  Score=89.25  Aligned_cols=128  Identities=19%  Similarity=0.195  Sum_probs=88.6

Q ss_pred             CCCCCE-EEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHH----c---CC-eEEEeeCCCCCCC--------CC
Q 018606           79 LPSGSL-VLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVD----R---GH-EVLVADAVNLPYR--------SD  137 (353)
Q Consensus        79 l~~~~~-VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~----~---~i-~~~~~D~~~l~~~--------~~  137 (353)
                      +++... |||||||||..+    ...|.....-.|+.+..+...+.    .   ++ .-+..|+..-+.+        .+
T Consensus        22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~  101 (204)
T PF06080_consen   22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE  101 (204)
T ss_pred             hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence            455554 999999999954    45888899999999887533332    2   22 3456777765322        45


Q ss_pred             CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccchhhccccccccHHhHhhhhCCCCCcccC
Q 018606          138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRS  213 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  213 (353)
                      .||+|++++++|-++-.. ...+++...++|++||.|+++-+-...      ..+.+....-+..|+....|....
T Consensus       102 ~~D~i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~------G~~ts~SN~~FD~sLr~rdp~~Gi  170 (204)
T PF06080_consen  102 SFDAIFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRD------GKFTSESNAAFDASLRSRDPEWGI  170 (204)
T ss_pred             CcceeeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccC------CEeCCcHHHHHHHHHhcCCCCcCc
Confidence            899999999998776544 789999999999999999999654432      223333344556666555554333

The function of this family is unknown.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.77  E-value=3.6e-08  Score=98.94  Aligned_cols=103  Identities=21%  Similarity=0.273  Sum_probs=76.0

Q ss_pred             CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~Vi  143 (353)
                      .+.++.+|||+|||+|..+.    . .+...|+|+|+++.+++.++++       +++++++|+..++  ++ +.||+|+
T Consensus       247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl  325 (444)
T PRK14902        247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKIL  325 (444)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEE
Confidence            45678899999999998642    2 3567999999999999998875       3678899988763  33 7899999


Q ss_pred             ech------hhhhcC------ChhH-------HHHHHHHHHhccccCcEEEEEEcCC
Q 018606          144 SIA------VLHHLS------TESR-------RKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       144 ~~~------vl~h~~------~~e~-------~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +..      ++.+-+      ....       ...+|..+.++|||||+++.++-..
T Consensus       326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            743      222111      1111       2468999999999999999776554

>PRK00811 spermidine synthase; Provisional

Probab=98.77  E-value=2.1e-08  Score=94.65  Aligned_cols=99  Identities=19%  Similarity=0.228  Sum_probs=73.3

Q ss_pred             CCCCEEEEECCcccccccc---CC-CcEEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCC-CCCCCCccEE
Q 018606           80 PSGSLVLDAGCGNGKYLGL---NP-DCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL-PYRSDFGDAA  142 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~---~~-~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l-~~~~~~fD~V  142 (353)
                      +...+||+||||+|..+..   .+ ..+|+++|+++.+++.|++.            +++++.+|+... ....++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            3457999999999997642   33 35899999999999999874            357888888763 3346789999


Q ss_pred             EechhhhhcCChh-HHHHHHHHHHhccccCcEEEEEE
Q 018606          143 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       143 i~~~vl~h~~~~e-~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ++...-.+.+... -..++++.+.+.|+|||++++..
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            9965433222111 02578899999999999988754

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.77  E-value=2e-08  Score=95.01  Aligned_cols=95  Identities=18%  Similarity=0.240  Sum_probs=68.4

Q ss_pred             CCCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      ...+|.+|||||||+|.++-  ...| .+|+|+|+++.+++.|+++    +  ..+.....  .......||+|+++-..
T Consensus       158 ~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~--~~~~~~~~dlvvANI~~  235 (295)
T PF06325_consen  158 YVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS--EDLVEGKFDLVVANILA  235 (295)
T ss_dssp             HSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT--SCTCCS-EEEEEEES-H
T ss_pred             hccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe--cccccccCCEEEECCCH
Confidence            35678999999999999853  2334 4899999999999999987    2  23433222  22335899999987543


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .-      ...++..+.++|+|||.++++-.-
T Consensus       236 ~v------L~~l~~~~~~~l~~~G~lIlSGIl  261 (295)
T PF06325_consen  236 DV------LLELAPDIASLLKPGGYLILSGIL  261 (295)
T ss_dssp             HH------HHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred             HH------HHHHHHHHHHhhCCCCEEEEcccc
Confidence            21      467888899999999999999654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=8.5e-08  Score=89.84  Aligned_cols=96  Identities=24%  Similarity=0.273  Sum_probs=73.7

Q ss_pred             CCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc----CC---eEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           82 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----GH---EVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~----~i---~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      +.+|||+|||.|.+-    ...|...++-+|++...++.|+++    ++   .++..|.. .+..+ +||+|||+--||-
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~-~~v~~-kfd~IisNPPfh~  236 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLY-EPVEG-KFDLIISNPPFHA  236 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccc-ccccc-cccEEEeCCCccC
Confidence            459999999999863    357889999999999999999987    22   34444443 34444 9999999877774


Q ss_pred             cCChh--HHHHHHHHHHhccccCcEEEEEEc
Q 018606          151 LSTES--RRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       151 ~~~~e--~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      =....  --.+++.+..+.|++||.|.|...
T Consensus       237 G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         237 GKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             CcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            33321  024899999999999999999976

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.75  E-value=3.2e-08  Score=100.68  Aligned_cols=96  Identities=14%  Similarity=0.116  Sum_probs=70.7

Q ss_pred             CCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech---
Q 018606           82 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA---  146 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~---  146 (353)
                      +.+|||+|||+|.++.    ..++..|+|+|+|+.+++.|+++        ++.++.+|+.. +++.+.||+|+++-   
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence            4689999999998753    35778999999999999999876        36778888754 23456899999932   


Q ss_pred             -----------hhhhcC---------ChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          147 -----------VLHHLS---------TESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       147 -----------vl~h~~---------~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                                 ++.|-+         ..+....++..+.++|+|||.+++..
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi  269 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI  269 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence                       111111         01124567888999999999998865

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.75  E-value=6.3e-09  Score=92.94  Aligned_cols=100  Identities=21%  Similarity=0.236  Sum_probs=85.9

Q ss_pred             CCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHc---C--CeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606           81 SGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR---G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~---~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~  152 (353)
                      ....++|||||-|...+.  ..+ .+++-+|.|-.|++.|+..   +  ....++|-+.++|.++++|+||++..+||+.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N  151 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN  151 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence            446899999999998764  222 3899999999999999876   3  3567889999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          153 TESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +   +...+.++...|||+|.|+-+.++.+.
T Consensus       152 d---LPg~m~~ck~~lKPDg~FiasmlggdT  179 (325)
T KOG2940|consen  152 D---LPGSMIQCKLALKPDGLFIASMLGGDT  179 (325)
T ss_pred             c---CchHHHHHHHhcCCCccchhHHhcccc
Confidence            8   778999999999999999998887653

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.73  E-value=4.7e-08  Score=93.17  Aligned_cols=107  Identities=27%  Similarity=0.328  Sum_probs=84.5

Q ss_pred             HHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----C---CeEEEe-eCCCCCCCCCCccEE
Q 018606           73 ATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G---HEVLVA-DAVNLPYRSDFGDAA  142 (353)
Q Consensus        73 ~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~~-D~~~l~~~~~~fD~V  142 (353)
                      .--|+.+.+|..|||-=||||.++-.  .-|+.++|+|++..|++-|+.+    +   ..+... |+..+|+++.++|+|
T Consensus       189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaI  268 (347)
T COG1041         189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAI  268 (347)
T ss_pred             HHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceE
Confidence            33455778999999999999998743  6788999999999999999887    2   345555 999999999999999


Q ss_pred             Eech------hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          143 ISIA------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       143 i~~~------vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ++--      .+.-..-.+...++|..+.++|++||++++..+
T Consensus       269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             EecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            9822      122122134467899999999999999988876

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.71  E-value=3.5e-08  Score=88.35  Aligned_cols=96  Identities=15%  Similarity=0.105  Sum_probs=72.1

Q ss_pred             CEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc------C-CeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606           83 SLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR------G-HEVLVADAVNLPYRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~------~-i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~  152 (353)
                      .+.||+|||-|+.+.  +.+- -.|..+|+++.+++.|++.      + .++++.-+.++....++||+|.+-+++.|++
T Consensus        57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLT  136 (218)
T PF05891_consen   57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLT  136 (218)
T ss_dssp             SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-
T ss_pred             ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCC
Confidence            589999999999875  2333 4999999999999999964      1 3566666666655567999999999999999


Q ss_pred             ChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          153 TESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      +.+ ...+|+++...|+|+|.++|-.-
T Consensus       137 D~d-lv~fL~RCk~~L~~~G~IvvKEN  162 (218)
T PF05891_consen  137 DED-LVAFLKRCKQALKPNGVIVVKEN  162 (218)
T ss_dssp             HHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHH-HHHHHHHHHHhCcCCcEEEEEec
Confidence            866 89999999999999999998753

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.71  E-value=4.6e-08  Score=89.85  Aligned_cols=102  Identities=19%  Similarity=0.136  Sum_probs=77.3

Q ss_pred             HHHHHHhCCCCCCEEEEECCcccccc----c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C---
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P---  133 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~----~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~---  133 (353)
                      .+..++....++.+|||||||+|.-+    . ..++.+++++|+++.+++.|+++        .++++.+|+.+. +   
T Consensus        58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~  137 (234)
T PLN02781         58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLL  137 (234)
T ss_pred             HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHH
Confidence            44555566667889999999999732    2 24467999999999999999886        468899998763 1   


Q ss_pred             --CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          134 --YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       134 --~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                        .+.+.||+|+..+.-      .....++..+.+.|+|||.+++..
T Consensus       138 ~~~~~~~fD~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        138 NNDPKPEFDFAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             hCCCCCCCCEEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence              124689999886421      225678999999999999988764

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=9.2e-08  Score=87.27  Aligned_cols=102  Identities=23%  Similarity=0.281  Sum_probs=87.4

Q ss_pred             hCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      ..+.||++|||.|.|+|.++.     ..+.++|+..|+-+..++.|+++        .+++..+|+.+.-+.+ .||+|+
T Consensus        90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~  168 (256)
T COG2519          90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVF  168 (256)
T ss_pred             cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEE
Confidence            468899999999999999753     25778999999999999999987        3788889998876654 899998


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccchh
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS  187 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~~~  187 (353)
                      .-     +++   +.++|..+..+|+|||.++++.++.+|-...
T Consensus       169 LD-----mp~---PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt  204 (256)
T COG2519         169 LD-----LPD---PWNVLEHVSDALKPGGVVVVYSPTVEQVEKT  204 (256)
T ss_pred             Ec-----CCC---hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHH
Confidence            85     566   7899999999999999999999999886544

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.68  E-value=4.3e-08  Score=87.57  Aligned_cols=95  Identities=26%  Similarity=0.393  Sum_probs=70.9

Q ss_pred             EEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CC--CCCCCccEEEechhhh
Q 018606           84 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LP--YRSDFGDAAISIAVLH  149 (353)
Q Consensus        84 ~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-l~--~~~~~fD~Vi~~~vl~  149 (353)
                      .+||||||.|.++.    ..|+..++|+|++...+..+.++       |+.++++|+.. +.  ++++++|.|....---
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP   99 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP   99 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence            89999999999863    48999999999999988877665       78999999987 32  5578999998876444


Q ss_pred             hcCChh--H---HHHHHHHHHhccccCcEEEEEE
Q 018606          150 HLSTES--R---RKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       150 h~~~~e--~---~~~~l~el~rvLkpgG~lli~~  178 (353)
                      |.....  +   -..+|..+.++|+|||.+.+.+
T Consensus       100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen  100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT  133 (195)
T ss_dssp             --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence            333211  0   2579999999999999998876

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.61  E-value=1.3e-07  Score=87.24  Aligned_cols=105  Identities=21%  Similarity=0.196  Sum_probs=80.9

Q ss_pred             HHhCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCC---CCC
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYR---SDF  138 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~---~~~  138 (353)
                      +...+.||++|||.|.|+|.++.     ..+.++|+..|+.+...+.|++.        ++++...|+....+.   +..
T Consensus        34 ~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~  113 (247)
T PF08704_consen   34 MRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESD  113 (247)
T ss_dssp             HHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTS
T ss_pred             HHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCc
Confidence            33478999999999999999753     36888999999999999999986        578999999764442   367


Q ss_pred             ccEEEechhhhhcCChhHHHHHHHHHHhcc-ccCcEEEEEEcCCCccchh
Q 018606          139 GDAAISIAVLHHLSTESRRKKAIEELVRVV-KKGSLVLITVWAVEQEDKS  187 (353)
Q Consensus       139 fD~Vi~~~vl~h~~~~e~~~~~l~el~rvL-kpgG~lli~~~~~~~~~~~  187 (353)
                      +|+|+.-     +++   +..+|..+.++| |+||+++++.++.+|....
T Consensus       114 ~DavfLD-----lp~---Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~  155 (247)
T PF08704_consen  114 FDAVFLD-----LPD---PWEAIPHAKRALKKPGGRICCFSPCIEQVQKT  155 (247)
T ss_dssp             EEEEEEE-----SSS---GGGGHHHHHHHE-EEEEEEEEEESSHHHHHHH
T ss_pred             ccEEEEe-----CCC---HHHHHHHHHHHHhcCCceEEEECCCHHHHHHH
Confidence            9999885     566   678999999999 9999999999999986543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK01581 speE spermidine synthase; Validated

Probab=98.60  E-value=1.7e-07  Score=90.47  Aligned_cols=99  Identities=18%  Similarity=0.114  Sum_probs=72.2

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCC-CCCCCCCcc
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVN-LPYRSDFGD  140 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~-l~~~~~~fD  140 (353)
                      +...+||+||||+|..+.    ..+..+|+++|+++.|++.|++.              +++++.+|+.. +....+.||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            445699999999998654    23346999999999999999961              56788888876 334457899


Q ss_pred             EEEechhhh--hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          141 AAISIAVLH--HLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       141 ~Vi~~~vl~--h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +|++...-.  .......-.++++.+.+.|+|||++++..
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            999974211  10111112578999999999999987764

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.57  E-value=7.5e-08  Score=91.42  Aligned_cols=110  Identities=17%  Similarity=0.120  Sum_probs=79.4

Q ss_pred             cccChHHHHHHHhCCCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC
Q 018606           65 RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP  133 (353)
Q Consensus        65 ~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~  133 (353)
                      |...++.+...-..+-.+.+|||||||+|.+..  +..| ..|+|+|.|.-+ +.|++.        -++++.+.++.+.
T Consensus        44 Rt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~  122 (346)
T KOG1499|consen   44 RTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE  122 (346)
T ss_pred             hHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe
Confidence            334444443333456788999999999999743  3334 599999987654 666654        2688889888877


Q ss_pred             CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606          134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       134 ~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      +|..+.|+|++-+.=+++.-+..+..+|-.=-+.|+|||.++
T Consensus       123 LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  123 LPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             cCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            777899999997766655544446667777778999999876

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.57  E-value=1.4e-07  Score=99.76  Aligned_cols=106  Identities=11%  Similarity=0.114  Sum_probs=75.3

Q ss_pred             HHHHhCCCCCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCC-CCCCCc
Q 018606           73 ATFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNLP-YRSDFG  139 (353)
Q Consensus        73 ~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~-~~~~~f  139 (353)
                      ..++..+.++.+|||+|||+|.+...  ..+. .|+++|+|+.+++.|+++         +++++++|+.+.. -..+.|
T Consensus       530 R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~f  609 (702)
T PRK11783        530 RRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQF  609 (702)
T ss_pred             HHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCc
Confidence            34455555688999999999998532  3344 799999999999999986         2578899986531 114689


Q ss_pred             cEEEech-hhh------h-cCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          140 DAAISIA-VLH------H-LSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       140 D~Vi~~~-vl~------h-~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      |+||+.- .+.      . .........++..+.++|+|||.++++.
T Consensus       610 DlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~  656 (702)
T PRK11783        610 DLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN  656 (702)
T ss_pred             CEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            9999842 110      0 0011125678888999999999998875

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.56  E-value=1.7e-07  Score=92.49  Aligned_cols=106  Identities=16%  Similarity=0.135  Sum_probs=74.3

Q ss_pred             HHHhCCCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCC--C--CCC
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP--Y--RSD  137 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~l~--~--~~~  137 (353)
                      ..+..+.++.+|||+|||+|.+..  ...+ .+|+++|+|+.+++.|+++    +     ++++++|+....  +  ..+
T Consensus       213 ~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~  292 (396)
T PRK15128        213 LATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGE  292 (396)
T ss_pred             HHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCC
Confidence            334445678899999999999742  2333 4999999999999999876    2     468889987642  1  246


Q ss_pred             CccEEEechhhhhcCCh-------hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          138 FGDAAISIAVLHHLSTE-------SRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~~-------e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +||+|++.---. ..+.       .....++....++|+|||.++++.-+
T Consensus       293 ~fDlVilDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs  341 (396)
T PRK15128        293 KFDVIVMDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS  341 (396)
T ss_pred             CCCEEEECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            899999863210 0110       11445666788999999999987644

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.56  E-value=2.6e-08  Score=98.54  Aligned_cols=98  Identities=18%  Similarity=0.272  Sum_probs=75.6

Q ss_pred             CEEEEECCcccccccc--CCCcEEEEE---eCCHHHHHHHHHcCCeEEEeeC--CCCCCCCCCccEEEechhhhhcCChh
Q 018606           83 SLVLDAGCGNGKYLGL--NPDCFFVGC---DISPSLIKICVDRGHEVLVADA--VNLPYRSDFGDAAISIAVLHHLSTES  155 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~~--~~~~~v~gv---D~S~~~l~~a~~~~i~~~~~D~--~~l~~~~~~fD~Vi~~~vl~h~~~~e  155 (353)
                      .++||||||.|.|...  ..++.+..+   |..+..++.|.++|+..+.+-+  ..|||++++||+|.|..++......+
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~  198 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND  198 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc
Confidence            4889999999999764  344433332   5566788999999987776653  57999999999999998775544332


Q ss_pred             HHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          156 RRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       156 ~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                        ..+|-++-|+|||||+++++.....
T Consensus       199 --g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  199 --GFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             --cceeehhhhhhccCceEEecCCccc
Confidence              4589999999999999999876544

; GO: 0008168 methyltransferase activity

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.56  E-value=1.1e-06  Score=84.08  Aligned_cols=104  Identities=15%  Similarity=0.229  Sum_probs=76.9

Q ss_pred             HHHhCCCCCCEEEEECCcccccc----c----cCCCcEEEEEeCCHHHHHHHHHc-------CCeE--EEeeCCC----C
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYL----G----LNPDCFFVGCDISPSLIKICVDR-------GHEV--LVADAVN----L  132 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~----~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~--~~~D~~~----l  132 (353)
                      .+...++++..|+|+|||+|.=+    .    ......++++|+|..+|+.+.++       .+.+  +.+|+.+    +
T Consensus        69 ~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l  148 (319)
T TIGR03439        69 DIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWL  148 (319)
T ss_pred             HHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhc
Confidence            34446778889999999999842    1    23457899999999999888765       2444  6777755    2


Q ss_pred             CC--CCCCccEEEech-hhhhcCChhHHHHHHHHHHh-ccccCcEEEEEE
Q 018606          133 PY--RSDFGDAAISIA-VLHHLSTESRRKKAIEELVR-VVKKGSLVLITV  178 (353)
Q Consensus       133 ~~--~~~~fD~Vi~~~-vl~h~~~~e~~~~~l~el~r-vLkpgG~lli~~  178 (353)
                      +-  ......+++..+ +|..+...+ ...+|+++++ .|+|||.|+|.+
T Consensus       149 ~~~~~~~~~r~~~flGSsiGNf~~~e-a~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       149 KRPENRSRPTTILWLGSSIGNFSRPE-AAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             ccccccCCccEEEEeCccccCCCHHH-HHHHHHHHHHhhCCCCCEEEEec
Confidence            21  123356666665 888888766 6889999999 999999999976

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PLN02366 spermidine synthase

Probab=98.54  E-value=2.7e-07  Score=87.98  Aligned_cols=99  Identities=20%  Similarity=0.215  Sum_probs=73.0

Q ss_pred             CCCCEEEEECCccccccc---cCCC-cEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-C-CCCCCccEE
Q 018606           80 PSGSLVLDAGCGNGKYLG---LNPD-CFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-P-YRSDFGDAA  142 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~---~~~~-~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-~-~~~~~fD~V  142 (353)
                      +...+||+||||.|..+.   ..+. .+|+.+|+++.+++.|++.           +++++.+|+... . .+.+.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            456799999999999764   2344 5899999999999999884           478888997542 1 235689999


Q ss_pred             EechhhhhcCChh-HHHHHHHHHHhccccCcEEEEEE
Q 018606          143 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       143 i~~~vl~h~~~~e-~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ++...-.+.+... --.++++.+.+.|+|||++++..
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            9965443322110 02468999999999999987643

>PRK03612 spermidine synthase; Provisional

Probab=98.54  E-value=2e-07  Score=95.31  Aligned_cols=99  Identities=19%  Similarity=0.141  Sum_probs=73.6

Q ss_pred             CCCCEEEEECCccccccc---cCCC-cEEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCCC-CCCCCCcc
Q 018606           80 PSGSLVLDAGCGNGKYLG---LNPD-CFFVGCDISPSLIKICVDR--------------GHEVLVADAVNL-PYRSDFGD  140 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~---~~~~-~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~l-~~~~~~fD  140 (353)
                      +++.+|||||||+|..+.   ..+. .+++++|+++.+++.|+++              +++++.+|+... ...+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            456799999999999764   2444 6999999999999999982              467888888763 23357899


Q ss_pred             EEEechhhhhcCChhH--HHHHHHHHHhccccCcEEEEEE
Q 018606          141 AAISIAVLHHLSTESR--RKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       141 ~Vi~~~vl~h~~~~e~--~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +|++.......+...+  -.++++.+.+.|+|||.+++..
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            9999754322111100  2468899999999999998875

>TIGR00417 speE spermidine synthase

Probab=98.52  E-value=2.8e-07  Score=86.44  Aligned_cols=98  Identities=16%  Similarity=0.111  Sum_probs=69.5

Q ss_pred             CCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCCccEEEe
Q 018606           81 SGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAIS  144 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-~~~~~~fD~Vi~  144 (353)
                      .+.+||+||||+|..+..    .+..+++++|+++.+++.|++.           +++++.+|.... .-..+.||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            345999999999986532    2346899999999999999874           355666666442 222568999998


Q ss_pred             chhhhhcCChh-HHHHHHHHHHhccccCcEEEEEE
Q 018606          145 IAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       145 ~~vl~h~~~~e-~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ......-+... -..++++.+.+.|+|||++++..
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            65422211110 02578899999999999998873

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.49  E-value=3.7e-07  Score=82.43  Aligned_cols=99  Identities=18%  Similarity=0.266  Sum_probs=69.3

Q ss_pred             CCCCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----CCeE------------------------
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----GHEV------------------------  124 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----~i~~------------------------  124 (353)
                      ....+..+|||||-+|.++..    .....|+|+|+.+.++..|++.     ....                        
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            344567999999999998642    3334799999999999999985     0000                        


Q ss_pred             --------------------EEeeCCCCCCCCCCccEEEechhh--hhcC-ChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          125 --------------------LVADAVNLPYRSDFGDAAISIAVL--HHLS-TESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       125 --------------------~~~D~~~l~~~~~~fD~Vi~~~vl--~h~~-~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                                          ...|+.  .+....||+|+|..+-  -|+. ..+-+..+++.+.++|.|||+|++.-
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                                001111  2334689999996643  2333 23447899999999999999998873

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.48  E-value=3.7e-07  Score=87.58  Aligned_cols=94  Identities=14%  Similarity=0.160  Sum_probs=65.8

Q ss_pred             CCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCCccEEEechhhhh
Q 018606           81 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH  150 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~-~~~~fD~Vi~~~vl~h  150 (353)
                      ++.+|||+|||+|.++.  ..++..|+|+|+++.+++.|+++       +++|+++|+..+.. ..+.||+|++.--   
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP---  249 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP---  249 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---
Confidence            46899999999999754  24567999999999999999876       47899999977542 2457999998622   


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                         .......+.++...++|++.++++...
T Consensus       250 ---r~G~~~~~~~~l~~~~~~~ivyvsc~p  276 (315)
T PRK03522        250 ---RRGIGKELCDYLSQMAPRFILYSSCNA  276 (315)
T ss_pred             ---CCCccHHHHHHHHHcCCCeEEEEECCc
Confidence               110112233333446788777777543

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.48  E-value=5.2e-07  Score=84.12  Aligned_cols=96  Identities=15%  Similarity=0.155  Sum_probs=78.4

Q ss_pred             CCEEEEECCcccc--cc------cc-----CCCcEEEEEeCCHHHHHHHHHc----------------------------
Q 018606           82 GSLVLDAGCGNGK--YL------GL-----NPDCFFVGCDISPSLIKICVDR----------------------------  120 (353)
Q Consensus        82 ~~~VLDvGCG~G~--~~------~~-----~~~~~v~gvD~S~~~l~~a~~~----------------------------  120 (353)
                      .-+|+-+||+||.  |.      ..     ...+.|+|+|++..+|+.|+.-                            
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            4699999999998  21      11     2357999999999999999852                            


Q ss_pred             --------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          121 --------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       121 --------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                              .+.|...|+..-++..+.||+|+|-+|+.++..+. ..+++..++..|+|||.|++-.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~-q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET-QERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH-HHHHHHHHHHHhCCCCEEEEcc
Confidence                    36777777777664567899999999999998665 6899999999999999998873

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.47  E-value=6.4e-07  Score=89.90  Aligned_cols=93  Identities=15%  Similarity=0.190  Sum_probs=68.1

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC----CCCCCCCccEEEec
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN----LPYRSDFGDAAISI  145 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~----l~~~~~~fD~Vi~~  145 (353)
                      +.++.+|||+|||+|.++..  .....|+|+|+|+.|++.|+++       +++++.+|+..    +++.+++||+|++.
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD  374 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence            45778999999999997532  3346999999999999999875       47899999864    23445689999884


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ---.     . ....+..+.+ ++|++.++++.
T Consensus       375 PPr~-----g-~~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        375 PPRA-----G-AAEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             cCCc-----C-hHHHHHHHHh-cCCCeEEEEEe
Confidence            2111     1 2344555555 68999988886

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=3.1e-07  Score=81.28  Aligned_cols=100  Identities=23%  Similarity=0.242  Sum_probs=79.8

Q ss_pred             HHHHHHh-CCCCCCEEEEECCccccccc------cCCCcEEEEEeCCHHHHHHHHHc-----------------CCeEEE
Q 018606           71 KVATFLN-SLPSGSLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDR-----------------GHEVLV  126 (353)
Q Consensus        71 ~~~~~l~-~l~~~~~VLDvGCG~G~~~~------~~~~~~v~gvD~S~~~l~~a~~~-----------------~i~~~~  126 (353)
                      .+++.|. .+.||.+.||||.|+|.+..      ..++...+|||.-+++++.++++                 .+.++.
T Consensus        71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv  150 (237)
T KOG1661|consen   71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV  150 (237)
T ss_pred             HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence            4445554 68899999999999999753      24566669999999999999876                 357889


Q ss_pred             eeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          127 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       127 ~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      +|.....-+...||.|.+.+.-         .+..+++...|++||+++|-.-
T Consensus       151 GDgr~g~~e~a~YDaIhvGAaa---------~~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  151 GDGRKGYAEQAPYDAIHVGAAA---------SELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             CCccccCCccCCcceEEEccCc---------cccHHHHHHhhccCCeEEEeec
Confidence            9999887778899999998542         3456778888999999998864

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.44  E-value=2.3e-07  Score=90.13  Aligned_cols=106  Identities=25%  Similarity=0.303  Sum_probs=90.3

Q ss_pred             HHHhCCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEE
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      .+.....++..++|+|||-|....   ......++|+|.++..+..+...        ...++.+|+.+.|++++.||.+
T Consensus       103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v  182 (364)
T KOG1269|consen  103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGV  182 (364)
T ss_pred             HHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcE
Confidence            344467788899999999998754   36778999999999877766554        3456888999999999999999


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      -++.+..|.++   ...+++|+.|+++|||+++...|...
T Consensus       183 ~~ld~~~~~~~---~~~~y~Ei~rv~kpGG~~i~~e~i~~  219 (364)
T KOG1269|consen  183 RFLEVVCHAPD---LEKVYAEIYRVLKPGGLFIVKEWIKT  219 (364)
T ss_pred             EEEeecccCCc---HHHHHHHHhcccCCCceEEeHHHHHh
Confidence            99999999999   78999999999999999999988754

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.43  E-value=1.7e-06  Score=70.56  Aligned_cols=95  Identities=38%  Similarity=0.662  Sum_probs=72.9

Q ss_pred             EEEECCcccc--ccc-cCCC-cEEEEEeCCHHHHHHHHHcC-------CeEEEeeCCC--CCCCC-CCccEEEechhhhh
Q 018606           85 VLDAGCGNGK--YLG-LNPD-CFFVGCDISPSLIKICVDRG-------HEVLVADAVN--LPYRS-DFGDAAISIAVLHH  150 (353)
Q Consensus        85 VLDvGCG~G~--~~~-~~~~-~~v~gvD~S~~~l~~a~~~~-------i~~~~~D~~~--l~~~~-~~fD~Vi~~~vl~h  150 (353)
                      ++|+|||+|.  ++. .... ..++|+|+++.++..++...       +.+..+|...  +++.. ..||++.+...+++
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  131 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHL  131 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhc
Confidence            9999999998  333 2332 58999999999998866553       5788888876  77776 48999944444444


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ..    ....+.++.++|+|+|.+++.......
T Consensus       132 ~~----~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         132 LP----PAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             CC----HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            44    578999999999999999999877544

>PRK04148 hypothetical protein; Provisional

Probab=98.43  E-value=2.4e-06  Score=71.32  Aligned_cols=96  Identities=16%  Similarity=0.105  Sum_probs=72.5

Q ss_pred             CCCEEEEECCcccc-ccc--cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-CCCccEEEechhhhhcCChhH
Q 018606           81 SGSLVLDAGCGNGK-YLG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESR  156 (353)
Q Consensus        81 ~~~~VLDvGCG~G~-~~~--~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~-~~~fD~Vi~~~vl~h~~~~e~  156 (353)
                      .+.++||||||.|. ++.  ...|..|+|+|+++..++.|++.+++++.+|+.+-.+. -..+|+|.++.     +++| 
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir-----pp~e-   89 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR-----PPRD-   89 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC-----CCHH-
Confidence            35789999999996 432  25688999999999999999999999999999986532 35679999864     2333 


Q ss_pred             HHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          157 RKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       157 ~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      ....+.++.+.  -|.-++|.....+..
T Consensus        90 l~~~~~~la~~--~~~~~~i~~l~~e~~  115 (134)
T PRK04148         90 LQPFILELAKK--INVPLIIKPLSGEEP  115 (134)
T ss_pred             HHHHHHHHHHH--cCCCEEEEcCCCCCC
Confidence            55566666654  456688888877763

>PLN02476 O-methyltransferase

Probab=98.41  E-value=1.5e-06  Score=81.46  Aligned_cols=102  Identities=15%  Similarity=0.158  Sum_probs=78.3

Q ss_pred             HHHHHHhCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C-
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-  134 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~-  134 (353)
                      .+..++..+.+..+|||||+|+|..+.     ..++..++++|.++.+++.|++.        .++++.+|+... + + 
T Consensus       108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~  187 (278)
T PLN02476        108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI  187 (278)
T ss_pred             HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence            445555666678899999999998532     23467899999999999999876        478888988652 2 1 


Q ss_pred             ---CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          135 ---RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       135 ---~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                         ..+.||+|+.-+-      ......++..+.++|+|||.+++..
T Consensus       188 ~~~~~~~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DN  228 (278)
T PLN02476        188 QNGEGSSYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDN  228 (278)
T ss_pred             hcccCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence               2368999998753      2236788999999999999988874

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.40  E-value=1.2e-06  Score=82.69  Aligned_cols=94  Identities=22%  Similarity=0.323  Sum_probs=66.8

Q ss_pred             EEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----C---CeEEEeeCCCCCCCCCCccEEEech-----h
Q 018606           84 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPYRSDFGDAAISIA-----V  147 (353)
Q Consensus        84 ~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----~---i~~~~~D~~~l~~~~~~fD~Vi~~~-----v  147 (353)
                      +|||+|||+|..+.    ..+...|+|+|+|+..++.|+++    +   +.++.+|... +. .+.||+|+++-     -
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~-~~~fDlIVsNPPYip~~  190 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PL-RGKFDLIVSNPPYIPAE  190 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-cc-CCceeEEEeCCCCCCCc
Confidence            79999999999753    36678999999999999999887    4   2344554433 23 34899999942     1


Q ss_pred             hhhcCC-----------------hhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          148 LHHLST-----------------ESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       148 l~h~~~-----------------~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..+..+                 .+-...++.++.+.|+|||.+++..-
T Consensus       191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g  239 (280)
T COG2890         191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG  239 (280)
T ss_pred             ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence            111111                 11256788899999999999888764

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.38  E-value=2e-06  Score=76.97  Aligned_cols=97  Identities=10%  Similarity=0.049  Sum_probs=68.3

Q ss_pred             CCCCEEEEECCccccccc--c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-CCCCCCccEEEechhh
Q 018606           80 PSGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-PYRSDFGDAAISIAVL  148 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~--~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l-~~~~~~fD~Vi~~~vl  148 (353)
                      .++.+|||+|||+|.+..  + ....+|+++|.++.+++.++++       ++.++.+|+... +.....||+|++.--.
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            456799999999999753  2 2235999999999999988875       467888888653 2224579999986542


Q ss_pred             hhcCChhHHHHHHHHHHh--ccccCcEEEEEEcC
Q 018606          149 HHLSTESRRKKAIEELVR--VVKKGSLVLITVWA  180 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~r--vLkpgG~lli~~~~  180 (353)
                      ..  .  ....++..+..  +|+|+|++++....
T Consensus       132 ~~--g--~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        132 RK--G--LLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             CC--C--hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            11  1  12344555544  47899998888654

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.37  E-value=1.1e-06  Score=79.38  Aligned_cols=105  Identities=16%  Similarity=0.165  Sum_probs=79.5

Q ss_pred             HHHHHHhCCCCCCEEEEECCcccccc----ccCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEE-eeCCCCC--C
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--------GHEVLV-ADAVNLP--Y  134 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~----~~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~-~D~~~l~--~  134 (353)
                      .+..++..+....+|||||.+.|.-+    ...+ ..+++.+|+++++.+.|++.        .+.++. +|....-  .
T Consensus        49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~  128 (219)
T COG4122          49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL  128 (219)
T ss_pred             HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence            45556666777889999999999843    2334 67999999999999999987        255666 4665422  3


Q ss_pred             CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          135 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       135 ~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ..++||+|+.-+.      ......++..+.++|+|||.+++.....
T Consensus       129 ~~~~fDliFIDad------K~~yp~~le~~~~lLr~GGliv~DNvl~  169 (219)
T COG4122         129 LDGSFDLVFIDAD------KADYPEYLERALPLLRPGGLIVADNVLF  169 (219)
T ss_pred             cCCCccEEEEeCC------hhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence            4689999998653      2225689999999999999999886443

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.35  E-value=4.9e-07  Score=81.25  Aligned_cols=118  Identities=18%  Similarity=0.213  Sum_probs=86.3

Q ss_pred             ccChHHHHHHHhC--CCCCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeeCCC
Q 018606           66 FAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVN  131 (353)
Q Consensus        66 ~~~~~~~~~~l~~--l~~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~  131 (353)
                      ..+|.....-...  .+.|.+|||.+.|-|..+.  ...|+ .|+.++-++..|+.|+-+         +++++.+|+.+
T Consensus       117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e  196 (287)
T COG2521         117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE  196 (287)
T ss_pred             cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence            3456554444443  3468999999999999764  36676 999999999999998765         57899999887


Q ss_pred             C--CCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          132 L--PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       132 l--~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +  .|++.+||+||-.--=..+...---.++..|++|+|||||+++-++-+..+
T Consensus       197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~  250 (287)
T COG2521         197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK  250 (287)
T ss_pred             HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc
Confidence            4  388999999986221000111111367899999999999999999876544

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=1.5e-06  Score=75.97  Aligned_cols=66  Identities=26%  Similarity=0.268  Sum_probs=53.4

Q ss_pred             CCCCCCEEEEECCccccccc--c-CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~--~-~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      ..-.|.+|+|+|||||.+..  . .....|+|+|+.+.+++.++++      +++|+.+|+..+.   ..+|.++++-
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNP  116 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNP  116 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECC
Confidence            34467899999999999853  2 3446999999999999999987      5899999998874   5678888854

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.33  E-value=8.1e-07  Score=81.01  Aligned_cols=96  Identities=21%  Similarity=0.284  Sum_probs=74.4

Q ss_pred             CEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCCCccEEEechhh
Q 018606           83 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAISIAVL  148 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~---~~~~~fD~Vi~~~vl  148 (353)
                      ..+||||||.|.++.    ..|...++|||+....+..|.++       |+.+++.|+..+-   +++++.|-|....--
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            589999999999753    48999999999999887777654       5677888887632   445599999987655


Q ss_pred             hhcCChh--H---HHHHHHHHHhccccCcEEEEEE
Q 018606          149 HHLSTES--R---RKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       149 ~h~~~~e--~---~~~~l~el~rvLkpgG~lli~~  178 (353)
                      -|.....  |   ...+++.+.++|+|||.|.+.+
T Consensus       130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence            4443321  1   2478999999999999998886

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.32  E-value=1.3e-06  Score=78.57  Aligned_cols=101  Identities=19%  Similarity=0.199  Sum_probs=75.2

Q ss_pred             HHHHHhCCCCCCEEEEECCcccccc----cc-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C----
Q 018606           72 VATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P----  133 (353)
Q Consensus        72 ~~~~l~~l~~~~~VLDvGCG~G~~~----~~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~----  133 (353)
                      +..++.......+||||||++|.-+    .. .++++|+.+|+++...+.|++.        .++++.+|+... +    
T Consensus        36 lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~  115 (205)
T PF01596_consen   36 LLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN  115 (205)
T ss_dssp             HHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred             HHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence            3444444455679999999999853    22 4578999999999999999875        578999998752 2    


Q ss_pred             -CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          134 -YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       134 -~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                       ...+.||+|+.-+.      .......+..+.++|+|||.+++..
T Consensus       116 ~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  116 DGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             TTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             ccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEcc
Confidence             12358999999763      2236778889999999999998875

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.32  E-value=1.8e-06  Score=77.32  Aligned_cols=90  Identities=14%  Similarity=0.124  Sum_probs=75.4

Q ss_pred             CEEEEECCccccc-cccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC---CCCccEEEechhhhhcCChhHHH
Q 018606           83 SLVLDAGCGNGKY-LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR---SDFGDAAISIAVLHHLSTESRRK  158 (353)
Q Consensus        83 ~~VLDvGCG~G~~-~~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~---~~~fD~Vi~~~vl~h~~~~e~~~  158 (353)
                      -++|||||=+... .....-..|+.||+.+.        .-.+.+.|+.+.|++   ++.||+|.++.||.+++++..|-
T Consensus        53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG  124 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRG  124 (219)
T ss_pred             ceEEeecccCCCCcccccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHH
Confidence            5999999975543 33455568999999873        456889999998864   67999999999999999999999


Q ss_pred             HHHHHHHhccccCcE-----EEEEEcC
Q 018606          159 KAIEELVRVVKKGSL-----VLITVWA  180 (353)
Q Consensus       159 ~~l~el~rvLkpgG~-----lli~~~~  180 (353)
                      +++..+.+.|+|+|.     |+|..+.
T Consensus       125 ~Ml~r~~~fL~~~g~~~~~~LFlVlP~  151 (219)
T PF11968_consen  125 EMLRRAHKFLKPPGLSLFPSLFLVLPL  151 (219)
T ss_pred             HHHHHHHHHhCCCCccCcceEEEEeCc
Confidence            999999999999999     8887654

>PLN02672 methionine S-methyltransferase

Probab=98.29  E-value=2.6e-06  Score=92.59  Aligned_cols=99  Identities=20%  Similarity=0.179  Sum_probs=70.3

Q ss_pred             CCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------------------CCeEEEeeCCCCCC
Q 018606           82 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------------------GHEVLVADAVNLPY  134 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------------------~i~~~~~D~~~l~~  134 (353)
                      +.+|||+|||+|....    ..+...|+|+|+|+.+++.|+++                       +++|+++|+.....
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            4689999999999743    35667999999999999999654                       26888999876431


Q ss_pred             C-CCCccEEEechh------hhhcCC-----------------------------hhHHHHHHHHHHhccccCcEEEEEE
Q 018606          135 R-SDFGDAAISIAV------LHHLST-----------------------------ESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       135 ~-~~~fD~Vi~~~v------l~h~~~-----------------------------~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      . ...||+||++--      +..+..                             -+-..+++.+..++|+|||.+++..
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            1 136999999321      011100                             0113577888889999999998886


Q ss_pred             cC
Q 018606          179 WA  180 (353)
Q Consensus       179 ~~  180 (353)
                      -.
T Consensus       279 G~  280 (1082)
T PLN02672        279 GG  280 (1082)
T ss_pred             Cc
Confidence            44

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.27  E-value=3.1e-06  Score=77.28  Aligned_cols=87  Identities=11%  Similarity=0.095  Sum_probs=56.6

Q ss_pred             CCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHcCCe---EEEeeCCCCCC-----CCCCccEEEechhh
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDRGHE---VLVADAVNLPY-----RSDFGDAAISIAVL  148 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~~i~---~~~~D~~~l~~-----~~~~fD~Vi~~~vl  148 (353)
                      .++.++||+|||||.++..  ..+ ..|+|+|+++.|+....+.+.+   +...|+..+..     .-..+|+++++.  
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~--  151 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISL--  151 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeeh--
Confidence            4678999999999998642  333 5899999999888763333222   33334443321     113566665543  


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                               ...+..+.++|+| |.+++.+
T Consensus       152 ---------~~~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       152 ---------ISILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             ---------HhHHHHHHHHhCc-CeEEEEc
Confidence                     3357788999999 7766554

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.26  E-value=2.1e-06  Score=80.60  Aligned_cols=69  Identities=16%  Similarity=0.166  Sum_probs=54.4

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.++.+|||||||+|.++..  ..+.+|+|+|+++.|++.++++    +++++++|+..+++++-.++.|+++-
T Consensus        39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~Nl  113 (272)
T PRK00274         39 GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANL  113 (272)
T ss_pred             CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeC
Confidence            346778999999999998642  2234899999999999999875    68899999999886542257777753

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.25  E-value=2.6e-06  Score=79.36  Aligned_cols=69  Identities=19%  Similarity=0.216  Sum_probs=56.3

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .+.++.+|||||||+|.++..  ..+..++|+|+++.|++.++++     +++++.+|+..++++  .||.|+++--.
T Consensus        26 ~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy  101 (258)
T PRK14896         26 EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLPY  101 (258)
T ss_pred             CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCCc
Confidence            356788999999999998642  3356999999999999999875     588999999998765  47999887553

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.25  E-value=7e-06  Score=76.07  Aligned_cols=102  Identities=18%  Similarity=0.107  Sum_probs=71.6

Q ss_pred             CCCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc-----------------------------------C
Q 018606           80 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-----------------------------------G  121 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~-----------------------------------~  121 (353)
                      ..|.++||||||+-.+-.  +.+.+ .|+..|.++.-++..++.                                   .
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            356799999999977633  23333 799999988877654431                                   1


Q ss_pred             C-eEEEeeCCCCC-CCC-----CCccEEEechhhhhcC-ChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          122 H-EVLVADAVNLP-YRS-----DFGDAAISIAVLHHLS-TESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       122 i-~~~~~D~~~l~-~~~-----~~fD~Vi~~~vl~h~~-~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      + .++.+|+.+.+ +..     ..||+|+++.+++... +.+....+++.+.++|||||.|++.....
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~  202 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG  202 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence            2 47889998754 332     2599999999998876 55668899999999999999999987643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.24  E-value=2.8e-06  Score=74.83  Aligned_cols=103  Identities=27%  Similarity=0.392  Sum_probs=68.7

Q ss_pred             HHhCCCCCCEEEEECCccccccc----cCCCc---------EEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLG----LNPDC---------FFVGCDISPSLIKICVDR--------GHEVLVADAVNLP  133 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~----~~~~~---------~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~  133 (353)
                      .+....++..|||.-||+|.++.    .....         .++|+|+++.+++.|+++        .+.+.+.|+..++
T Consensus        22 ~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~  101 (179)
T PF01170_consen   22 NLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP  101 (179)
T ss_dssp             HHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred             HHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence            34466788999999999999852    12222         399999999999999887        3578899999999


Q ss_pred             CCCCCccEEEechhhhh-cCC----hhHHHHHHHHHHhccccCcEEEEEE
Q 018606          134 YRSDFGDAAISIAVLHH-LST----ESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       134 ~~~~~fD~Vi~~~vl~h-~~~----~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +.++++|+|++.--..- +..    .+....+++++.++|++ ..++++.
T Consensus       102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~  150 (179)
T PF01170_consen  102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT  150 (179)
T ss_dssp             GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred             cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence            87889999999542221 111    12245778999999999 4444443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.24  E-value=1.2e-05  Score=74.87  Aligned_cols=98  Identities=17%  Similarity=0.210  Sum_probs=78.8

Q ss_pred             CCCEEEEECCccccccc----cCCC--cEEEEEeCCHHHHHHHHHc-------CC-eEEEeeCCCCC-C--CCCCccEEE
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPD--CFFVGCDISPSLIKICVDR-------GH-EVLVADAVNLP-Y--RSDFGDAAI  143 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~--~~v~gvD~S~~~l~~a~~~-------~i-~~~~~D~~~l~-~--~~~~fD~Vi  143 (353)
                      ..-+||||+||.|+|+-    ..+.  ..|.-.|.|+..++..++.       ++ +|.++|+.+.. +  -.-..+++|
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            44699999999999852    2333  5999999999999887764       34 89999988632 1  133469999


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .++.++.+++.+.....|.-+.+++.|||.++.+.
T Consensus       215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            99999999998877889999999999999987664

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.21  E-value=8.2e-06  Score=69.92  Aligned_cols=101  Identities=22%  Similarity=0.253  Sum_probs=84.8

Q ss_pred             CCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCC-----CCCCCccEEEech
Q 018606           79 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLP-----YRSDFGDAAISIA  146 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~-----~~~~~fD~Vi~~~  146 (353)
                      ...|..|||+|.|||.++..     .+...+++++.|+.......++  +++++.+|+..+.     ..+..||.|||.-
T Consensus        46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l  125 (194)
T COG3963          46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL  125 (194)
T ss_pred             cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence            34567999999999998753     4556999999999999998887  7889999998765     5567899999988


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      -+-.++... +.++|+.+...|.+||.++-..+.
T Consensus       126 Pll~~P~~~-~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         126 PLLNFPMHR-RIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             ccccCcHHH-HHHHHHHHHHhcCCCCeEEEEEec
Confidence            777777544 688999999999999999988877

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.21  E-value=3.5e-06  Score=84.28  Aligned_cols=94  Identities=18%  Similarity=0.315  Sum_probs=66.7

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC----CCCCCCccEEEec
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL----PYRSDFGDAAISI  145 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l----~~~~~~fD~Vi~~  145 (353)
                      +.++.+|||+|||+|.++..  .....|+|+|+++.|++.|+++       +++|+.+|+...    ++.+++||+|++.
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d  369 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD  369 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence            45678999999999998542  2345899999999999999875       578999998652    2335679999874


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      --=..+     ...++..+.+ ++|++.++++.
T Consensus       370 PPr~G~-----~~~~l~~l~~-l~~~~ivyvsc  396 (431)
T TIGR00479       370 PPRKGC-----AAEVLRTIIE-LKPERIVYVSC  396 (431)
T ss_pred             cCCCCC-----CHHHHHHHHh-cCCCEEEEEcC
Confidence            321000     1355565554 78988777763

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.20  E-value=2.3e-06  Score=85.60  Aligned_cols=92  Identities=15%  Similarity=0.219  Sum_probs=65.5

Q ss_pred             CCEEEEECCccccccc----c----CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           82 GSLVLDAGCGNGKYLG----L----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~----~----~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      +..|||||||+|.+..    +    ....+|++++-++.++...+++        .|+++.+|++.+..+ ..+|+||+-
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE  265 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE  265 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence            5689999999999742    1    2346999999999877655332        589999999998875 488999994


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      .. ..+.+.|...++|....|.|||||+++
T Consensus       266 lL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  266 LL-GSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             cc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence            43 233344456678999999999999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.18  E-value=4.5e-06  Score=73.10  Aligned_cols=98  Identities=19%  Similarity=0.109  Sum_probs=61.8

Q ss_pred             CCCCCEEEEECCcccccc---cc-CCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCC----CCCCCcc
Q 018606           79 LPSGSLVLDAGCGNGKYL---GL-NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLP----YRSDFGD  140 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~---~~-~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l~----~~~~~fD  140 (353)
                      ...+.+|||+|||+|...   .. .....|+.+|..+ .++.++.+          .+.+...|-..-.    +....||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            456789999999999642   22 3567999999998 77776654          2455555543311    3346899


Q ss_pred             EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +|+...+++.-..   ...++.-+.++|+++|.+++....
T Consensus       122 ~IlasDv~Y~~~~---~~~L~~tl~~ll~~~~~vl~~~~~  158 (173)
T PF10294_consen  122 VILASDVLYDEEL---FEPLVRTLKRLLKPNGKVLLAYKR  158 (173)
T ss_dssp             EEEEES--S-GGG---HHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred             EEEEecccchHHH---HHHHHHHHHHHhCCCCEEEEEeCE
Confidence            9999999986433   788999999999999997777643

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.15  E-value=1.5e-05  Score=73.43  Aligned_cols=101  Identities=19%  Similarity=0.203  Sum_probs=70.6

Q ss_pred             CCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-----CCCCCCCccEEE
Q 018606           81 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-----LPYRSDFGDAAI  143 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-----l~~~~~~fD~Vi  143 (353)
                      .+..|||+|||+|...    ...+.+.++++|.|+.++..|.++        ++.++..+++.     .+...+.+|+++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv  227 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV  227 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence            4568999999999864    236789999999999999999887        35555444332     335568899999


Q ss_pred             echh-h-----hhcCC-----------------hhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          144 SIAV-L-----HHLST-----------------ESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       144 ~~~v-l-----~h~~~-----------------~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ++-- +     ..+..                 .+-...++.-..|.|+|||.+.+..-..
T Consensus       228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~  288 (328)
T KOG2904|consen  228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER  288 (328)
T ss_pred             cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence            8431 1     00110                 0113466777889999999999887543

>PLN02823 spermine synthase

Probab=98.12  E-value=8e-06  Score=78.83  Aligned_cols=94  Identities=21%  Similarity=0.226  Sum_probs=70.0

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCCccEEEe
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAIS  144 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-~~~~~~fD~Vi~  144 (353)
                      ...+||.||+|.|..+.    ..+..+++.+|+++.+++.|++.           +++++.+|+... ....+.||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            44689999999998754    23345899999999999999975           467888887763 334578999998


Q ss_pred             chhh-------hhcCChhHHHHHHH-HHHhccccCcEEEEEE
Q 018606          145 IAVL-------HHLSTESRRKKAIE-ELVRVVKKGSLVLITV  178 (353)
Q Consensus       145 ~~vl-------~h~~~~e~~~~~l~-el~rvLkpgG~lli~~  178 (353)
                      ...-       .++-+    .++++ .+.+.|+|||++++..
T Consensus       183 D~~dp~~~~~~~~Lyt----~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        183 DLADPVEGGPCYQLYT----KSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             cCCCccccCcchhhcc----HHHHHHHHHHhcCCCcEEEEec
Confidence            6321       12222    46777 8999999999987653

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.12  E-value=7.6e-06  Score=75.66  Aligned_cols=102  Identities=16%  Similarity=0.087  Sum_probs=75.9

Q ss_pred             HHHHHHhCCCCCCEEEEECCcccccc----c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C-
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-  134 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~----~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~-  134 (353)
                      .+..++.......+|||||+++|.-+    . ..++++++.+|+++...+.|++.        .++++.+|+.+. + + 
T Consensus        69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~  148 (247)
T PLN02589         69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI  148 (247)
T ss_pred             HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence            34444445555679999999999842    2 24578999999999999999876        578899988662 2 1 


Q ss_pred             ----CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          135 ----RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       135 ----~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                          ..++||+|+.-+-      .......+..+.+.|+|||.+++..
T Consensus       149 ~~~~~~~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        149 EDGKYHGTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             hccccCCcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence                1368999998753      2225678888899999999988763

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=2.8e-06  Score=71.06  Aligned_cols=68  Identities=24%  Similarity=0.360  Sum_probs=57.5

Q ss_pred             CCCEEEEECCccccccc--cC-CCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           81 SGSLVLDAGCGNGKYLG--LN-PDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~~-~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .|.+++|+|||.|.+..  .. ..-.|+|+|+.+..++++.++      +++++++|+..+.+..+.||.++..--+
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF  124 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence            57899999999999862  23 345899999999999999987      6789999999988888999999986543

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.12  E-value=6.7e-06  Score=81.35  Aligned_cols=132  Identities=16%  Similarity=0.193  Sum_probs=96.3

Q ss_pred             HHHHHHHHhhccccccccccChHHHHHHHh-CCCCCC-EEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHcC-
Q 018606           48 KYVHRVYDAIAPHFSSTRFAKWPKVATFLN-SLPSGS-LVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRG-  121 (353)
Q Consensus        48 ~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~-~l~~~~-~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~~-  121 (353)
                      .++..+|-... .-..++|..|..+...+- .+.+-. ++|-+|||+-.+...   .....|+-+|.|+..++....++ 
T Consensus        14 ~~wd~rf~~rg-~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~   92 (482)
T KOG2352|consen   14 VYWDKRFQPRG-SDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA   92 (482)
T ss_pred             hhhhhhccccC-CChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc
Confidence            34444444333 112234455554444443 445556 999999999987642   33359999999999988877763 


Q ss_pred             -----CeEEEeeCCCCCCCCCCccEEEechhhhhcCChhH-------HHHHHHHHHhccccCcEEEEEEcC
Q 018606          122 -----HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR-------RKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       122 -----i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~-------~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                           ..+..+|+..+.|++++||+||..+.++++-..+.       +...+.+++|+|++||+.+..+..
T Consensus        93 ~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~  163 (482)
T KOG2352|consen   93 KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV  163 (482)
T ss_pred             cCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence                 57899999999999999999999999999765442       345789999999999998877763

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.11  E-value=3.7e-06  Score=85.65  Aligned_cols=98  Identities=13%  Similarity=0.212  Sum_probs=73.8

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEEEechh
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAV  147 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~Vi~~~v  147 (353)
                      .+..+||||||.|.++.    ..|...++|+|++...+..+.++       |+.++..|+..+.  ++++++|.|+..+-
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            45799999999999853    48999999999999876665444       5667777765332  67888999998765


Q ss_pred             hhhcCCh--hH---HHHHHHHHHhccccCcEEEEEE
Q 018606          148 LHHLSTE--SR---RKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       148 l~h~~~~--e~---~~~~l~el~rvLkpgG~lli~~  178 (353)
                      --|....  .+   -..++..+.++|+|||.+.+.+
T Consensus       427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence            4443321  11   2478999999999999998875

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.11  E-value=8.6e-06  Score=77.62  Aligned_cols=95  Identities=17%  Similarity=0.203  Sum_probs=74.5

Q ss_pred             CCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhH
Q 018606           82 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR  156 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~  156 (353)
                      -...+|+|.|.|..+..  ...-.|-++++....+-.++..   +++.+-+|+.+- .|.+  |+|++.++|||+.|.+ 
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwtDed-  253 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWTDED-  253 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCChHH-
Confidence            37999999999997652  2222467777777766555444   488888998875 4444  6999999999999876 


Q ss_pred             HHHHHHHHHhccccCcEEEEEEcC
Q 018606          157 RKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       157 ~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ..++|+++...|+|||.+++...-
T Consensus       254 cvkiLknC~~sL~~~GkIiv~E~V  277 (342)
T KOG3178|consen  254 CVKILKNCKKSLPPGGKIIVVENV  277 (342)
T ss_pred             HHHHHHHHHHhCCCCCEEEEEecc
Confidence            799999999999999999998763

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.10  E-value=6.1e-06  Score=81.02  Aligned_cols=92  Identities=13%  Similarity=0.151  Sum_probs=65.6

Q ss_pred             CCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCCccEEEechhhhh
Q 018606           81 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH  150 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~-~~~~fD~Vi~~~vl~h  150 (353)
                      ++.+|||+|||+|.+..  ..++..|+|+|+++.+++.|+++       +++|+.+|+..... ....||+|++.---..
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G  312 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG  312 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence            46799999999998743  34557999999999999999876       46799999876421 1246999988532111


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +     ...++..+. .++|++.++++.
T Consensus       313 ~-----~~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       313 I-----GKELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             C-----cHHHHHHHH-hcCCCeEEEEEe
Confidence            1     134445554 478999888886

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.09  E-value=6.1e-06  Score=76.65  Aligned_cols=92  Identities=21%  Similarity=0.181  Sum_probs=62.7

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCcc---EEEechhh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGD---AAISIAVL  148 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD---~Vi~~~vl  148 (353)
                      +.++.+|||||||+|.++..  ..+..++++|+++.|++.++++     +++++.+|+..++++  .+|   +|+++-- 
T Consensus        27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP-  103 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLP-  103 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCC-
Confidence            45678999999999998653  3335799999999999999875     578899999998865  455   5655433 


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .|+.     ..++.++..  .+++..++....
T Consensus       104 y~i~-----~~il~~ll~--~~~~~~~~~~~q  128 (253)
T TIGR00755       104 YNIS-----SPLIFKLLE--KPKFRLAVLMVQ  128 (253)
T ss_pred             hhhH-----HHHHHHHhc--cCCCceEEEEeh
Confidence            2232     234444443  455554444443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.07  E-value=8.4e-06  Score=79.88  Aligned_cols=110  Identities=16%  Similarity=0.154  Sum_probs=81.0

Q ss_pred             HHHHHhCCCCCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCC----CC
Q 018606           72 VATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNLP----YR  135 (353)
Q Consensus        72 ~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~----~~  135 (353)
                      ....+...-.|.+|||+-|=||.+.-  +..|+ +|+++|+|...++.|+++         .+.++++|+...-    -+
T Consensus       208 ~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~  287 (393)
T COG1092         208 NRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR  287 (393)
T ss_pred             HHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc
Confidence            34455555559999999999999854  35666 999999999999999997         2579999987632    23


Q ss_pred             CCCccEEEech-hhhh-----cCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          136 SDFGDAAISIA-VLHH-----LSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       136 ~~~fD~Vi~~~-vl~h-----~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ...||+||.-- .+.-     +.-......++..+.++|+|||.+++++-..
T Consensus       288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            45999999821 1100     1111226788999999999999999987543

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.05  E-value=3.3e-05  Score=68.30  Aligned_cols=92  Identities=24%  Similarity=0.201  Sum_probs=69.0

Q ss_pred             CCCCC-EEEEECCcccc----ccccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           79 LPSGS-LVLDAGCGNGK----YLGLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        79 l~~~~-~VLDvGCG~G~----~~~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      ++... +++|||+|.|.    ++...|..+++.+|....-+...+.-       |++++.+.++. +.....||+|++-+
T Consensus        45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA  123 (184)
T PF02527_consen   45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA  123 (184)
T ss_dssp             S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred             hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh
Confidence            34444 89999999997    23458999999999998765544432       67899998888 55578999999988


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +    .+   ...++.-+...|++||.+++.-
T Consensus       124 v----~~---l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  124 V----AP---LDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             S----SS---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             h----cC---HHHHHHHHHHhcCCCCEEEEEc
Confidence            5    33   5678888999999999988874

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.04  E-value=8.7e-06  Score=77.29  Aligned_cols=73  Identities=19%  Similarity=0.306  Sum_probs=56.6

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      .+.++.+|||||||+|.++..  ..+..|+|+|+++.|++.++++        +++++.+|+...+++  .||+|+++--
T Consensus        33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlP  110 (294)
T PTZ00338         33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVP  110 (294)
T ss_pred             CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCC
Confidence            456788999999999998652  3456899999999999999874        478999999887653  6898887543


Q ss_pred             hhhcCC
Q 018606          148 LHHLST  153 (353)
Q Consensus       148 l~h~~~  153 (353)
                       .++.+
T Consensus       111 -Y~Ist  115 (294)
T PTZ00338        111 -YQISS  115 (294)
T ss_pred             -cccCc
Confidence             33444

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.02  E-value=1.9e-05  Score=73.69  Aligned_cols=126  Identities=15%  Similarity=0.104  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHhhccccc----cccccChHHHHHHHhCCCC-------CCEEEEECCccccccc--cCCCcEEEEEeCCHH
Q 018606           46 EKKYVHRVYDAIAPHFS----STRFAKWPKVATFLNSLPS-------GSLVLDAGCGNGKYLG--LNPDCFFVGCDISPS  112 (353)
Q Consensus        46 e~~~v~~~yd~~a~~y~----~~~~~~~~~~~~~l~~l~~-------~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~  112 (353)
                      +...|.....++...|+    ..|...+..+...|..+.|       ..+||=-|||.|+++-  ...|..+.|.|.|--
T Consensus        10 d~~kV~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~   89 (270)
T PF07942_consen   10 DMDKVRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYF   89 (270)
T ss_pred             hHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHH
Confidence            34455555555555554    3555555556666654422       4699999999999863  355889999999999


Q ss_pred             HHHHHHH-------c----------------------------------------CCeEEEeeCCCCCCCC---CCccEE
Q 018606          113 LIKICVD-------R----------------------------------------GHEVLVADAVNLPYRS---DFGDAA  142 (353)
Q Consensus       113 ~l~~a~~-------~----------------------------------------~i~~~~~D~~~l~~~~---~~fD~V  142 (353)
                      |+-...-       .                                        ++....+|+..+...+   +.||+|
T Consensus        90 Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~V  169 (270)
T PF07942_consen   90 MLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVV  169 (270)
T ss_pred             HHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEE
Confidence            8643221       0                                        2345566766655444   799999


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEE
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLV  174 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~l  174 (353)
                      +..+.|.-..+   ....|..|.++|||||..
T Consensus       170 vT~FFIDTA~N---i~~Yi~tI~~lLkpgG~W  198 (270)
T PF07942_consen  170 VTCFFIDTAEN---IIEYIETIEHLLKPGGYW  198 (270)
T ss_pred             EEEEEeechHH---HHHHHHHHHHHhccCCEE
Confidence            99976665444   889999999999999943

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=2.5e-05  Score=69.73  Aligned_cols=133  Identities=20%  Similarity=0.146  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhhccccccccccChHHHHHHHh---CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHH
Q 018606           47 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICV  118 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~---~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~  118 (353)
                      .++..+.|...|..- .-|-..+.++.++..   -+.++..|+|+|+-+|.+++.     .++..|+|+|+.+--.    
T Consensus         9 ~~~~~D~Y~~~Ak~~-gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----   83 (205)
T COG0293           9 AEHLRDPYYKKAKKE-GYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----   83 (205)
T ss_pred             HHhhcCHHHHHHhhc-cccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----
Confidence            344455555544321 112233334444443   367899999999999998752     4556799999866321    


Q ss_pred             HcCCeEEEeeCCCCC--------CCCCCccEEEech--------hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          119 DRGHEVLVADAVNLP--------YRSDFGDAAISIA--------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       119 ~~~i~~~~~D~~~l~--------~~~~~fD~Vi~~~--------vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      -.++.++++|++.-+        +....+|+|+|-.        ..+|......-..++.-...+|+|||.+++-+|..+
T Consensus        84 ~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~  163 (205)
T COG0293          84 IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE  163 (205)
T ss_pred             CCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence            126999999998743        3345579999733        335555444345667777789999999999998876


Q ss_pred             cc
Q 018606          183 QE  184 (353)
Q Consensus       183 ~~  184 (353)
                      ..
T Consensus       164 ~~  165 (205)
T COG0293         164 DF  165 (205)
T ss_pred             CH
Confidence            54

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.98  E-value=3e-05  Score=73.24  Aligned_cols=96  Identities=17%  Similarity=0.134  Sum_probs=70.8

Q ss_pred             CCCCEEEEECCcccccc--ccCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           80 PSGSLVLDAGCGNGKYL--GLNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~--~~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      -.+..|||||||+|.+.  ....| .+|++++.| +|.++|++.        +|.++.+-++++.++ +..|+||+--.=
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG  253 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG  253 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence            45789999999999964  23444 499999976 688888875        578899999998875 567999985433


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ..+- .||..+..-..++.|+|.|.++=++
T Consensus       254 ~mL~-NERMLEsYl~Ark~l~P~GkMfPT~  282 (517)
T KOG1500|consen  254 YMLV-NERMLESYLHARKWLKPNGKMFPTV  282 (517)
T ss_pred             hhhh-hHHHHHHHHHHHhhcCCCCcccCcc
Confidence            3333 3445565566679999999877543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.93  E-value=4.4e-05  Score=72.88  Aligned_cols=133  Identities=17%  Similarity=0.248  Sum_probs=80.3

Q ss_pred             HHHHHHHHhhcccccc------ccccChHHHHHHHh---CCCCCCEEEEECCcccccccc-----------CCCcEEEEE
Q 018606           48 KYVHRVYDAIAPHFSS------TRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL-----------NPDCFFVGC  107 (353)
Q Consensus        48 ~~v~~~yd~~a~~y~~------~~~~~~~~~~~~l~---~l~~~~~VLDvGCG~G~~~~~-----------~~~~~v~gv  107 (353)
                      +.+.++|+.+-..+..      ..+.....+..++.   ...++.+|+|.+||+|.++..           .....++|+
T Consensus         4 d~~g~~yE~~l~~~~~~~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~   83 (311)
T PF02384_consen    4 DILGDLYEYFLKKFAKESRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGI   83 (311)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEE
T ss_pred             cHHHHHHHHHHHHHHHHhccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEee
Confidence            4455666655444411      12222333333332   456677999999999998632           266799999


Q ss_pred             eCCHHHHHHHHHc---------CCeEEEeeCCCCCCC--CCCccEEEechhhhhc-------C-----------ChhHHH
Q 018606          108 DISPSLIKICVDR---------GHEVLVADAVNLPYR--SDFGDAAISIAVLHHL-------S-----------TESRRK  158 (353)
Q Consensus       108 D~S~~~l~~a~~~---------~i~~~~~D~~~l~~~--~~~fD~Vi~~~vl~h~-------~-----------~~e~~~  158 (353)
                      |+++.++..|+-+         ...+..+|....+..  ...||+|++.--+.-.       .           ....-.
T Consensus        84 ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (311)
T PF02384_consen   84 EIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEY  163 (311)
T ss_dssp             ES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHH
T ss_pred             cCcHHHHHHHHhhhhhhccccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhh
Confidence            9999999888754         235788887765533  4789999994422211       0           001123


Q ss_pred             HHHHHHHhccccCcEEEEEEcC
Q 018606          159 KAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       159 ~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .++..+.+.|++||++.+.++.
T Consensus       164 ~Fi~~~l~~Lk~~G~~~~Ilp~  185 (311)
T PF02384_consen  164 AFIEHALSLLKPGGRAAIILPN  185 (311)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEEH
T ss_pred             hhHHHHHhhcccccceeEEecc
Confidence            5889999999999998888764

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.91  E-value=6.4e-05  Score=75.74  Aligned_cols=107  Identities=17%  Similarity=0.166  Sum_probs=74.9

Q ss_pred             CCCCCCEEEEECCcccccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~-~~~~~fD~Vi~  144 (353)
                      ...+|.+|||++||+|.=+    .. .....+++.|+++.-++.++++       ++.+...|...+. ...+.||.|+.
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence            4578999999999999832    22 3446999999999988887765       3456677777653 33467999994


Q ss_pred             ----ch--hhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          145 ----IA--VLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       145 ----~~--vl~h~~~~-------------e~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                          ++  ++..-++.             ....++|....+.|||||+|+-++-+....
T Consensus       190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~e  248 (470)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNRE  248 (470)
T ss_pred             cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHH
Confidence                32  33221110             113678999999999999998777665443

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.86  E-value=8e-06  Score=71.75  Aligned_cols=111  Identities=17%  Similarity=0.148  Sum_probs=65.4

Q ss_pred             hHHHHHHHhC---CCC--CCEEEEECCcccccccc--C---CCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC------
Q 018606           69 WPKVATFLNS---LPS--GSLVLDAGCGNGKYLGL--N---PDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------  132 (353)
Q Consensus        69 ~~~~~~~l~~---l~~--~~~VLDvGCG~G~~~~~--~---~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l------  132 (353)
                      |-++.+++..   +.+  +.++||+||++|.++..  .   +...|+|+|+.+.-    .-.++.++++|+...      
T Consensus         6 ~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i   81 (181)
T PF01728_consen    6 AFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDI   81 (181)
T ss_dssp             HHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHG
T ss_pred             HHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhh
Confidence            3344454443   234  48999999999998652  2   35899999998751    002445555555431      


Q ss_pred             C--CC--CCCccEEEechhhhh--------cCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          133 P--YR--SDFGDAAISIAVLHH--------LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       133 ~--~~--~~~fD~Vi~~~vl~h--------~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .  +.  ...||+|+|-.+...        ..........+.-+...|+|||.+++-++....
T Consensus        82 ~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~  144 (181)
T PF01728_consen   82 RKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE  144 (181)
T ss_dssp             GGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred             hhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence            1  11  268999999773221        111122345566666789999999999887544

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.82  E-value=0.0001  Score=65.51  Aligned_cols=97  Identities=12%  Similarity=0.093  Sum_probs=64.1

Q ss_pred             CCCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C-CC-CCccEEEe
Q 018606           80 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-RS-DFGDAAIS  144 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~-~~-~~fD~Vi~  144 (353)
                      -.+.++||++||+|.+..  ...++ .|+++|.++.+++.++++        +++++.+|+... . + .. ..||+|+.
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            357899999999998743  23443 899999999999988875        257888888542 2 1 12 24788877


Q ss_pred             chhhhhcCChhHHHHHHHHH--HhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEEL--VRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el--~rvLkpgG~lli~~~~  180 (353)
                      .--... ..   ...++..+  ..+|+++|.+++....
T Consensus       128 DPPy~~-~~---~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       128 DPPFFN-GA---LQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             CcCCCC-Cc---HHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            433221 11   23344433  3468899988877544

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.81  E-value=3.7e-05  Score=67.09  Aligned_cols=103  Identities=18%  Similarity=0.280  Sum_probs=72.1

Q ss_pred             CCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-eCCCC--------CCCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNL--------PYRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l--------~~~~~~fD~Vi  143 (353)
                      -+.|+.+|||+||.+|.+.+     ..|...|.|+|+-.    +.--.|..++++ |+.+-        .++....|+|+
T Consensus        66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVl  141 (232)
T KOG4589|consen   66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVL  141 (232)
T ss_pred             ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEE
Confidence            46789999999999999875     26889999999732    222236677766 66641        14567889999


Q ss_pred             ech--------hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          144 SIA--------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       144 ~~~--------vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      +-.        ...|....+.-..++.-....++|+|.+++-+|..++.
T Consensus       142 SDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~  190 (232)
T KOG4589|consen  142 SDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE  190 (232)
T ss_pred             eccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence            832        34444443333445555667788999999999998764

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.77  E-value=0.00016  Score=65.17  Aligned_cols=98  Identities=20%  Similarity=0.300  Sum_probs=71.5

Q ss_pred             CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCH----HHHHHHHHc-CCeEEEeeCCCCC---CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISP----SLIKICVDR-GHEVLVADAVNLP---YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~----~~l~~a~~~-~i~~~~~D~~~l~---~~~~~fD~Vi~  144 (353)
                      .+.+|++||-+|..+|.....     .+.+.|+|+++|+    .++..|++| |+--+..|+..-.   .--+.+|+|++
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~  149 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ  149 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence            457899999999999997542     6688999999999    567888887 7888889988622   11348899988


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .-     ..+++..-++..+...||+||.+++..-+
T Consensus       150 DV-----aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa  180 (229)
T PF01269_consen  150 DV-----AQPDQARIAALNARHFLKPGGHLIISIKA  180 (229)
T ss_dssp             E------SSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cC-----CChHHHHHHHHHHHhhccCCcEEEEEEec
Confidence            63     23344667888888999999999999743

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.74  E-value=5.9e-05  Score=72.30  Aligned_cols=69  Identities=22%  Similarity=0.244  Sum_probs=48.6

Q ss_pred             CCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc---C------CeEEE-eeCCCCC----CCCCCccEE
Q 018606           81 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR---G------HEVLV-ADAVNLP----YRSDFGDAA  142 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~---~------i~~~~-~D~~~l~----~~~~~fD~V  142 (353)
                      .+.++||||||+|...    ...++..++|+|+++.+++.|++.   +      +.+.. .|...+.    .+.+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            4579999999998542    235678999999999999999976   2      33432 2322221    235689999


Q ss_pred             Eechhhh
Q 018606          143 ISIAVLH  149 (353)
Q Consensus       143 i~~~vl~  149 (353)
                      +|+--++
T Consensus       194 vcNPPf~  200 (321)
T PRK11727        194 LCNPPFH  200 (321)
T ss_pred             EeCCCCc
Confidence            9976544

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.73  E-value=9.3e-05  Score=72.82  Aligned_cols=89  Identities=21%  Similarity=0.142  Sum_probs=67.0

Q ss_pred             CCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           82 GSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      +.+|||++||+|.+...    .+...|+++|+++.+++.++++       ++.+..+|+..+....+.||+|++.--   
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~---  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF---  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence            46899999999997431    2334899999999999999876       245888888664221457999988531   


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                       ..   ...++....+.+++||.++++
T Consensus       135 -Gs---~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 -GS---PAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             -CC---cHHHHHHHHHHhcCCCEEEEE
Confidence             22   356788877888999999999

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.73  E-value=7e-05  Score=67.06  Aligned_cols=94  Identities=18%  Similarity=0.216  Sum_probs=64.1

Q ss_pred             HHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccE
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDA  141 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~  141 (353)
                      .+...+.++.+|||+.||-|.|+-    ..+...|+++|+++..++.++++        .+..+.+|+..+.. ...||-
T Consensus        94 Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~dr  172 (200)
T PF02475_consen   94 RIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDR  172 (200)
T ss_dssp             HHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEE
T ss_pred             HHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCE
Confidence            444457889999999999999853    24667999999999999988876        36789999988765 789999


Q ss_pred             EEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606          142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      |++..     +..  -..+|..+.+++++||.+-
T Consensus       173 vim~l-----p~~--~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  173 VIMNL-----PES--SLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEE-------TSS--GGGGHHHHHHHEEEEEEEE
T ss_pred             EEECC-----hHH--HHHHHHHHHHHhcCCcEEE
Confidence            98864     211  2357888999999998763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.71  E-value=3.2e-05  Score=72.93  Aligned_cols=110  Identities=16%  Similarity=0.193  Sum_probs=72.8

Q ss_pred             HHHHHHhCCCCCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC-C--CC
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL-P--YR  135 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l-~--~~  135 (353)
                      ....++.....|.+|||+=|=||.+..  ...|+ +|+.+|.|..+++.|+++         .++++.+|+... .  -.
T Consensus       113 ~nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~  192 (286)
T PF10672_consen  113 ENRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK  192 (286)
T ss_dssp             HHHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH
T ss_pred             hhHHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc
Confidence            333444444568999999999999853  34554 899999999999999987         357888898752 1  12


Q ss_pred             CCCccEEEech-hhh--hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          136 SDFGDAAISIA-VLH--HLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       136 ~~~fD~Vi~~~-vl~--h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .+.||+||+-- .+.  ...-......++..+.++|+|||.|+++.-+
T Consensus       193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs  240 (286)
T PF10672_consen  193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS  240 (286)
T ss_dssp             TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            46899999821 110  0000122567899999999999998877654

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.69  E-value=0.00014  Score=68.60  Aligned_cols=99  Identities=18%  Similarity=0.182  Sum_probs=72.9

Q ss_pred             hCCCCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCC-CCCCCcc
Q 018606           77 NSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP-YRSDFGD  140 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~-~~~~~fD  140 (353)
                      .+-.+ .+||-||-|.|..++.    .+--+++.+|+.+..++.|++.           +++++..|..+.- -...+||
T Consensus        73 ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD  151 (282)
T COG0421          73 AHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD  151 (282)
T ss_pred             hCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence            34344 6999999999998763    4456999999999999999986           3467777776632 2234899


Q ss_pred             EEEechhhhhcCChhH--HHHHHHHHHhccccCcEEEEE
Q 018606          141 AAISIAVLHHLSTESR--RKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       141 ~Vi~~~vl~h~~~~e~--~~~~l~el~rvLkpgG~lli~  177 (353)
                      +||+-..-. ....+.  -..+++.+.+.|+++|+++..
T Consensus       152 vIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         152 VIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            999965433 111000  167999999999999999888

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.68  E-value=3e-05  Score=69.73  Aligned_cols=96  Identities=22%  Similarity=0.326  Sum_probs=57.1

Q ss_pred             CCCCCCEEEEECCccccccc---cCCCc-EEEEEeCCHHHHHHHHHc----------------CCeEEEeeCCCCCCCC-
Q 018606           78 SLPSGSLVLDAGCGNGKYLG---LNPDC-FFVGCDISPSLIKICVDR----------------GHEVLVADAVNLPYRS-  136 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~l~~~~-  136 (353)
                      .+.+++..+|||||.|+...   +..++ ..+||++.+...+.|+..                .+++..+|+.+.++.. 
T Consensus        39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~  118 (205)
T PF08123_consen   39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD  118 (205)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence            46788999999999999642   33445 599999999988777642                2466777877643211 


Q ss_pred             --CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          137 --DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       137 --~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                        ...|+|++++...   +++ ....|.++..-||+|-++ |+.
T Consensus       119 ~~s~AdvVf~Nn~~F---~~~-l~~~L~~~~~~lk~G~~I-Is~  157 (205)
T PF08123_consen  119 IWSDADVVFVNNTCF---DPD-LNLALAELLLELKPGARI-IST  157 (205)
T ss_dssp             HGHC-SEEEE--TTT----HH-HHHHHHHHHTTS-TT-EE-EES
T ss_pred             hhcCCCEEEEecccc---CHH-HHHHHHHHHhcCCCCCEE-EEC
Confidence              2358999987642   233 567778888899988665 443

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.67  E-value=2.5e-05  Score=69.21  Aligned_cols=92  Identities=16%  Similarity=0.161  Sum_probs=72.2

Q ss_pred             CCEEEEECCcccccccc-CCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHH
Q 018606           82 GSLVLDAGCGNGKYLGL-NPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK  159 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~~-~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~  159 (353)
                      ..++||+|+|.|..+.. .|.. .|.+.++|..|+...++++..++...  ...-.+-.||+|.|..++.---+   +-+
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~--ew~~t~~k~dli~clNlLDRc~~---p~k  187 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEI--EWLQTDVKLDLILCLNLLDRCFD---PFK  187 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeeh--hhhhcCceeehHHHHHHHHhhcC---hHH
Confidence            36999999999998764 4443 89999999999999999987765431  11112446899999999876655   688


Q ss_pred             HHHHHHhcccc-CcEEEEEE
Q 018606          160 AIEELVRVVKK-GSLVLITV  178 (353)
Q Consensus       160 ~l~el~rvLkp-gG~lli~~  178 (353)
                      +|..++.+|+| +|++++..
T Consensus       188 LL~Di~~vl~psngrvivaL  207 (288)
T KOG3987|consen  188 LLEDIHLVLAPSNGRVIVAL  207 (288)
T ss_pred             HHHHHHHHhccCCCcEEEEE
Confidence            99999999999 88887764

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.66  E-value=0.00016  Score=68.08  Aligned_cols=97  Identities=20%  Similarity=0.208  Sum_probs=67.2

Q ss_pred             CCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc--CCe---E--EEeeCC--CCCCCCCCccEEEechh
Q 018606           82 GSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--GHE---V--LVADAV--NLPYRSDFGDAAISIAV  147 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~--~i~---~--~~~D~~--~l~~~~~~fD~Vi~~~v  147 (353)
                      ..+|||+|||+|.-+-    . ..-..++++|.|+.|++.++..  ...   .  ...+..  ..++  ...|+|++.++
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~~  111 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASYV  111 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEehh
Confidence            3589999999998532    1 2234899999999999998875  110   0  001111  1122  23399999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      |..+++ +.+..+++.+.+.+.+  .|+|...+...
T Consensus       112 L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~  144 (274)
T PF09243_consen  112 LNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPA  144 (274)
T ss_pred             hhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence            999998 5578999999888766  77777665443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00032  Score=61.05  Aligned_cols=101  Identities=13%  Similarity=0.307  Sum_probs=68.5

Q ss_pred             CCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechh---
Q 018606           82 GSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAV---  147 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~v---  147 (353)
                      ...+||||||+|....     ..++..+.++|+++.+++.-++.      ++..++.|+..- ++.++.|+++.+--   
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp  122 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP  122 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence            4689999999998532     36778999999999998774443      467788887653 23477788776321   


Q ss_pred             ------------hhhc---CChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          148 ------------LHHL---STESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       148 ------------l~h~---~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                                  .-+.   ...+-..+++..+-.+|.|.|.+++.......
T Consensus       123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~  173 (209)
T KOG3191|consen  123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK  173 (209)
T ss_pred             CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence                        0111   11111346677777888999999998765443

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.57  E-value=0.00012  Score=67.43  Aligned_cols=66  Identities=24%  Similarity=0.294  Sum_probs=56.8

Q ss_pred             CCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      .++++..|||||.|||.++.  +..+..|+++++.+.|+....++        .+.++.+|+...+++  .||.+|++
T Consensus        55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN  130 (315)
T KOG0820|consen   55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN  130 (315)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence            57889999999999999976  37788999999999999998887        368899999988754  68999884

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.54  E-value=0.00094  Score=65.17  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=77.8

Q ss_pred             HHHhCCCCCCEEEEECCccccc----ccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCC
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKY----LGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSD  137 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~----~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~---~~~~  137 (353)
                      ..+....+|.+|||+++++|.=    +.+  ..+..|+++|+++.-++..+++       ++.+...|...++   ...+
T Consensus       149 a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~  228 (355)
T COG0144         149 ALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGE  228 (355)
T ss_pred             HHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccC
Confidence            3444667899999999999972    223  3356789999999877776665       3457778877654   2223


Q ss_pred             CccEEEe------chhhhhcCC------hh-------HHHHHHHHHHhccccCcEEEEEEcCCCccch
Q 018606          138 FGDAAIS------IAVLHHLST------ES-------RRKKAIEELVRVVKKGSLVLITVWAVEQEDK  186 (353)
Q Consensus       138 ~fD~Vi~------~~vl~h~~~------~e-------~~~~~l~el~rvLkpgG~lli~~~~~~~~~~  186 (353)
                      .||.|+.      .++|.--++      .+       ...++|....++|||||+|+-++-+...+..
T Consensus       229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eEN  296 (355)
T COG0144         229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEEN  296 (355)
T ss_pred             cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcC
Confidence            5999988      334422111      11       1467899999999999999999877655443

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.48  E-value=0.00072  Score=61.07  Aligned_cols=97  Identities=20%  Similarity=0.169  Sum_probs=73.2

Q ss_pred             HhCCCCCCEEEEECCcccccc-----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC------CCCC
Q 018606           76 LNSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL------PYRS  136 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~-----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l------~~~~  136 (353)
                      +..+-..++.||||.=||.-+     ....+++|+++|+.+...+++.+.        .++++++++...      ....
T Consensus        68 li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~  147 (237)
T KOG1663|consen   68 LIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGES  147 (237)
T ss_pred             HHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCC
Confidence            334455689999999888743     236678999999999988887654        578888887651      1456


Q ss_pred             CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          137 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ++||+++.-+    ..+  .....+.++.++||+||+|++..
T Consensus       148 ~tfDfaFvDa----dK~--nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  148 GTFDFAFVDA----DKD--NYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             CceeEEEEcc----chH--HHHHHHHHHHhhcccccEEEEec
Confidence            8999998753    222  25578999999999999998874

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00028  Score=65.41  Aligned_cols=75  Identities=19%  Similarity=0.240  Sum_probs=58.7

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCC-CccEEEechhhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSD-FGDAAISIAVLH  149 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~-~fD~Vi~~~vl~  149 (353)
                      .+.++..|||||+|.|.++..  ..+..|+++++.+.++...+++     +++++.+|+...+++.- .++.|+++- =+
T Consensus        27 ~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNl-PY  105 (259)
T COG0030          27 NISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANL-PY  105 (259)
T ss_pred             CCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcC-CC
Confidence            345588999999999999863  5667899999999999998887     58999999999988653 456776643 23


Q ss_pred             hcCC
Q 018606          150 HLST  153 (353)
Q Consensus       150 h~~~  153 (353)
                      ++++
T Consensus       106 ~Iss  109 (259)
T COG0030         106 NISS  109 (259)
T ss_pred             cccH
Confidence            3444

>PRK00536 speE spermidine synthase; Provisional

Probab=97.46  E-value=0.00063  Score=63.42  Aligned_cols=87  Identities=9%  Similarity=-0.020  Sum_probs=65.0

Q ss_pred             CCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           80 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      +...+||=||.|.|..++.   .+. +|+-+|+.+.+++.|++.           +++++.. +.  ....++||+||+-
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvD  146 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICL  146 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEc
Confidence            4457999999999998753   333 999999999999999984           3444431 11  1123689999987


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ..    .+    ..+.+.+.|.|+|||.++...
T Consensus       147 s~----~~----~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        147 QE----PD----IHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CC----CC----hHHHHHHHHhcCCCcEEEECC
Confidence            43    22    567899999999999998864

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.45  E-value=0.0002  Score=67.95  Aligned_cols=75  Identities=19%  Similarity=0.208  Sum_probs=54.9

Q ss_pred             HHHHHHhCCCCCCEEEEECCccccccc----cC-CCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCC--CCCC-
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP--YRSD-  137 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~-~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~--~~~~-  137 (353)
                      .+...+. +.++..+||.+||.|.++.    .. +.+.|+|+|.++.|++.|+++     ++.++++|+.++.  .+.+ 
T Consensus        10 Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~   88 (296)
T PRK00050         10 EVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGL   88 (296)
T ss_pred             HHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCC
Confidence            3444443 3577899999999999754    23 368999999999999999875     5778888877653  2122 


Q ss_pred             -CccEEEech
Q 018606          138 -FGDAAISIA  146 (353)
Q Consensus       138 -~fD~Vi~~~  146 (353)
                       .+|.|++..
T Consensus        89 ~~vDgIl~DL   98 (296)
T PRK00050         89 GKVDGILLDL   98 (296)
T ss_pred             CccCEEEECC
Confidence             688888744

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.44  E-value=0.00035  Score=64.73  Aligned_cols=96  Identities=17%  Similarity=0.176  Sum_probs=69.2

Q ss_pred             CCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCC-CCCC-CccEE
Q 018606           80 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP-YRSD-FGDAA  142 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~-~~~~-~fD~V  142 (353)
                      +...+||=||-|.|..+..    .+...++.+|+++.+++.|++.           +++++.+|+...- -..+ .||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            3567999999999987542    3346999999999999999874           4688888886532 2233 89999


Q ss_pred             Eechhh-----hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          143 ISIAVL-----HHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       143 i~~~vl-----~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      +.-..-     ..+-+    .++++.+.+.|+|||.+++...
T Consensus       155 i~D~~dp~~~~~~l~t----~ef~~~~~~~L~~~Gv~v~~~~  192 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFT----REFYQLCKRRLKPDGVLVLQAG  192 (246)
T ss_dssp             EEESSSTTSCGGGGSS----HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeCCCCCCCcccccC----HHHHHHHHhhcCCCcEEEEEcc
Confidence            984432     11222    5789999999999999998863

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.42  E-value=0.00098  Score=70.77  Aligned_cols=78  Identities=22%  Similarity=0.174  Sum_probs=52.9

Q ss_pred             EEEEEeCCHHHHHHHHHc----C----CeEEEeeCCCCCCC--CCCccEEEechhhh-hcCChhHHHHHHHHHHhcc---
Q 018606          103 FFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYR--SDFGDAAISIAVLH-HLSTESRRKKAIEELVRVV---  168 (353)
Q Consensus       103 ~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~l~~~--~~~fD~Vi~~~vl~-h~~~~e~~~~~l~el~rvL---  168 (353)
                      .++|+|+++.+++.|+.+    +    +.+.++|+.+++.+  .++||+|+++--.. -+.+......+..++.+.|   
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~  337 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ  337 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence            699999999999999987    2    57889999887644  35799999974221 2222222333434444444   


Q ss_pred             ccCcEEEEEEcC
Q 018606          169 KKGSLVLITVWA  180 (353)
Q Consensus       169 kpgG~lli~~~~  180 (353)
                      .+|+.+++.+..
T Consensus       338 ~~g~~~~llt~~  349 (702)
T PRK11783        338 FGGWNAALFSSS  349 (702)
T ss_pred             CCCCeEEEEeCC
Confidence            489888777653

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.42  E-value=0.00086  Score=62.34  Aligned_cols=100  Identities=21%  Similarity=0.223  Sum_probs=66.3

Q ss_pred             CEEEEECCcccc--cc-----ccCCCcEEEEEeCCHHHHHHHHHc-----C--CeEEEeeCCCCC-----------CCCC
Q 018606           83 SLVLDAGCGNGK--YL-----GLNPDCFFVGCDISPSLIKICVDR-----G--HEVLVADAVNLP-----------YRSD  137 (353)
Q Consensus        83 ~~VLDvGCG~G~--~~-----~~~~~~~v~gvD~S~~~l~~a~~~-----~--i~~~~~D~~~l~-----------~~~~  137 (353)
                      ...||||||-=.  ..     ...|.++|+-+|..+-.+..++..     +  ..++++|+.+..           +.-.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~  149 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD  149 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence            689999999432  11     138999999999999999887775     3  578999998621           1112


Q ss_pred             CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .-=.+++.++|||+++.+++..++..++..|.||..|+|+..+.+
T Consensus       150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence            333688899999999988899999999999999999999988765

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.37  E-value=0.00029  Score=68.70  Aligned_cols=89  Identities=10%  Similarity=0.076  Sum_probs=58.3

Q ss_pred             CEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-----------C-----CC
Q 018606           83 SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-----------R-----SD  137 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~-----------~-----~~  137 (353)
                      .+|||++||+|.+...  .....|+|+|+++.|++.|+++       +++|+.+|+.++.-           .     ..
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  278 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY  278 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence            4799999999997532  2224899999999999999986       46789998876321           0     11


Q ss_pred             CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .||+|+..--     .......++..+.   +|+++++|+.-
T Consensus       279 ~~d~v~lDPP-----R~G~~~~~l~~l~---~~~~ivYvsC~  312 (353)
T TIGR02143       279 NCSTIFVDPP-----RAGLDPDTCKLVQ---AYERILYISCN  312 (353)
T ss_pred             CCCEEEECCC-----CCCCcHHHHHHHH---cCCcEEEEEcC
Confidence            3788877321     0000123444443   47888888753

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.36  E-value=0.0012  Score=59.66  Aligned_cols=91  Identities=21%  Similarity=0.097  Sum_probs=67.4

Q ss_pred             CCEEEEECCccccc----cccCCCcEEEEEeCCHHHHHHHH---Hc----CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           82 GSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICV---DR----GHEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        82 ~~~VLDvGCG~G~~----~~~~~~~~v~gvD~S~~~l~~a~---~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      +.+++|||+|.|.=    +...|+..|+-+|....-+...+   +.    |++++++-++++.-....||+|++-++   
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv---  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV---  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence            58999999999972    33578888999998876544433   32    688999988887632222999999875   


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                       .+   ...++.-+...+|+||.+++.-+
T Consensus       145 -a~---L~~l~e~~~pllk~~g~~~~~k~  169 (215)
T COG0357         145 -AS---LNVLLELCLPLLKVGGGFLAYKG  169 (215)
T ss_pred             -cc---hHHHHHHHHHhcccCCcchhhhH
Confidence             23   56677778899999998876543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.30  E-value=0.00047  Score=66.13  Aligned_cols=85  Identities=19%  Similarity=0.181  Sum_probs=62.0

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHH-HHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKIC-VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES  155 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a-~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e  155 (353)
                      +.+|.++|||||++|.++..  ..+..|+|||..+ |-... ...++.....|......+.+.+|+++|-.+..      
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~------  281 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK------  281 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC------
Confidence            56899999999999998753  5677999999655 33322 23368888887766543367899999976532      


Q ss_pred             HHHHHHHHHHhccccC
Q 018606          156 RRKKAIEELVRVVKKG  171 (353)
Q Consensus       156 ~~~~~l~el~rvLkpg  171 (353)
                       +.+++.-|.+.|..|
T Consensus       282 -P~rva~lm~~Wl~~g  296 (357)
T PRK11760        282 -PARVAELMAQWLVNG  296 (357)
T ss_pred             -HHHHHHHHHHHHhcC
Confidence             567777788888766

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.29  E-value=8.6e-05  Score=62.90  Aligned_cols=87  Identities=20%  Similarity=0.293  Sum_probs=61.1

Q ss_pred             EEEEECCccccccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHH
Q 018606           84 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE  163 (353)
Q Consensus        84 ~VLDvGCG~G~~~~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~e  163 (353)
                      -.+-||||.=.+   +|+...+-+.-.+         .+++++--....+|.+++.|+|++.++++|+.-.| -..++++
T Consensus         5 ~kv~ig~G~~r~---npgWi~~d~ed~~---------~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~E-g~~alke   71 (185)
T COG4627           5 EKVKIGAGGKRV---NPGWIITDVEDRP---------EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDE-GTSALKE   71 (185)
T ss_pred             eEEEEecccccc---CCCceeeehhccc---------ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHH-HHHHHHH
Confidence            467799997433   3454333221111         12222222234578899999999999999999766 6899999


Q ss_pred             HHhccccCcEEEEEEcCCCc
Q 018606          164 LVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       164 l~rvLkpgG~lli~~~~~~~  183 (353)
                      ++|.|||||.|.|.++...-
T Consensus        72 chr~Lrp~G~LriAvPdl~f   91 (185)
T COG4627          72 CHRFLRPGGKLRIAVPDLKF   91 (185)
T ss_pred             HHHHhCcCcEEEEEcCCcch
Confidence            99999999999999987654

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.28  E-value=0.00044  Score=67.70  Aligned_cols=90  Identities=12%  Similarity=0.088  Sum_probs=59.8

Q ss_pred             CEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-C-CC--------------CC
Q 018606           83 SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-P-YR--------------SD  137 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l-~-~~--------------~~  137 (353)
                      .+|||++||+|.+...  .....|+|+|.++.+++.|+++       +++++.+|+... + +.              ..
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~  287 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSY  287 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCC
Confidence            5799999999997532  2234899999999999999876       467899998652 1 10              12


Q ss_pred             CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .||+|+..--=.-+     ...+++.+.   +|+++++++.-.
T Consensus       288 ~~D~v~lDPPR~G~-----~~~~l~~l~---~~~~ivyvSC~p  322 (362)
T PRK05031        288 NFSTIFVDPPRAGL-----DDETLKLVQ---AYERILYISCNP  322 (362)
T ss_pred             CCCEEEECCCCCCC-----cHHHHHHHH---ccCCEEEEEeCH
Confidence            58999874210000     133444443   378888777643

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.19  E-value=0.0019  Score=62.30  Aligned_cols=104  Identities=17%  Similarity=0.212  Sum_probs=81.9

Q ss_pred             HHHhCCCCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHc-------C-CeEEEeeCCCCCCCCCCccEE
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-------G-HEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~-------~-i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      ..+....+|.+|||+=||-|.|+-.  ..+ ..|+++|+++..+++++++       + +..+++|+..+....+.+|-|
T Consensus       181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrI  260 (341)
T COG2520         181 RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRI  260 (341)
T ss_pred             HHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEE
Confidence            3444557799999999999998642  223 3499999999999999886       2 678999999987655889999


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      ++...-    +   -..++....+.+++||.+.++.+..+..
T Consensus       261 im~~p~----~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~  295 (341)
T COG2520         261 IMGLPK----S---AHEFLPLALELLKDGGIIHYYEFVPEDD  295 (341)
T ss_pred             EeCCCC----c---chhhHHHHHHHhhcCcEEEEEeccchhh
Confidence            997532    2   3567888888999999999998876654

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.18  E-value=0.0002  Score=63.27  Aligned_cols=106  Identities=21%  Similarity=0.143  Sum_probs=69.0

Q ss_pred             HHHHhCC-CCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc----C----CeEEEeeCCC-CC---CCC
Q 018606           73 ATFLNSL-PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----G----HEVLVADAVN-LP---YRS  136 (353)
Q Consensus        73 ~~~l~~l-~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~----~----i~~~~~D~~~-l~---~~~  136 (353)
                      ...+... -+|.++||+-||+|.+.-  +..| ..|+.+|.+...++.++++    +    +.++.+|+.. ++   ...
T Consensus        33 FniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~  112 (183)
T PF03602_consen   33 FNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKG  112 (183)
T ss_dssp             HHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCT
T ss_pred             HHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccC
Confidence            3344433 468999999999999742  3455 4999999999999998887    2    5678888653 21   246


Q ss_pred             CCccEEEechhhhhcCChhHHHHHHHHHH--hccccCcEEEEEEcCC
Q 018606          137 DFGDAAISIAVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWAV  181 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~--rvLkpgG~lli~~~~~  181 (353)
                      ..||+|++.--...-.  . ...++..+.  .+|+++|.+++.....
T Consensus       113 ~~fDiIflDPPY~~~~--~-~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  113 EKFDIIFLDPPYAKGL--Y-YEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             S-EEEEEE--STTSCH--H-HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CCceEEEECCCcccch--H-HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            8999999853221110  0 245666666  7999999999887553

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.17  E-value=0.0038  Score=58.57  Aligned_cols=94  Identities=17%  Similarity=0.213  Sum_probs=60.4

Q ss_pred             CEEEEECCccccccc------cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           83 SLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~------~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      ++|+=||||+=-++.      ..++..++++|+++..++.+++.         ++.|+.+|....+..-..||+|+..+.
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal  201 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL  201 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence            599999999866532      24577999999999999888763         579999999887655578999998776


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ...-..+  -.++|..+.+.++||..+++-.
T Consensus       202 Vg~~~e~--K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  202 VGMDAEP--KEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             -S----S--HHHHHHHHHHHS-TTSEEEEEE
T ss_pred             cccccch--HHHHHHHHHhhCCCCcEEEEec
Confidence            5433222  5789999999999999888773

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.0033  Score=58.17  Aligned_cols=101  Identities=19%  Similarity=0.251  Sum_probs=79.1

Q ss_pred             CCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCC--CCCCccEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPY--RSDFGDAA  142 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~--~~~~fD~V  142 (353)
                      .+.||++||+-|.|+|.+..     ..|-++++-+|+-....+.|++.        ++++..-|+...-|  .+..+|+|
T Consensus       102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV  181 (314)
T KOG2915|consen  102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV  181 (314)
T ss_pred             cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence            57899999999999999742     36778999999988877777664        67899999988654  35688988


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCc-EEEEEEcCCCccch
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGS-LVLITVWAVEQEDK  186 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG-~lli~~~~~~~~~~  186 (353)
                      +..     ++.   +..++.-+..+||.+| +++-..++.||...
T Consensus       182 FLD-----lPa---Pw~AiPha~~~lk~~g~r~csFSPCIEQvqr  218 (314)
T KOG2915|consen  182 FLD-----LPA---PWEAIPHAAKILKDEGGRLCSFSPCIEQVQR  218 (314)
T ss_pred             EEc-----CCC---hhhhhhhhHHHhhhcCceEEeccHHHHHHHH
Confidence            774     455   6778888888998876 77766788887553

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.02  E-value=0.0034  Score=55.70  Aligned_cols=98  Identities=19%  Similarity=0.225  Sum_probs=73.5

Q ss_pred             CCCCCCEEEEECCcccccccc----CCCcEEEEEeCCHH----HHHHHHHc-CCeEEEeeCCCCC---CCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPS----LIKICVDR-GHEVLVADAVNLP---YRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~----~l~~a~~~-~i~~~~~D~~~l~---~~~~~fD~Vi~~  145 (353)
                      .+.+|++||-+|+.+|.....    .+...++|+++|+.    ++..|+++ |+--+..|+..-.   .--+..|+|+.-
T Consensus        73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D  152 (231)
T COG1889          73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD  152 (231)
T ss_pred             CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe
Confidence            356899999999999997643    44678999999986    46677777 7877888887632   112457888774


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                           +..+.+..-++.++...||+||.+++..-+
T Consensus       153 -----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKA  182 (231)
T COG1889         153 -----VAQPNQAEILADNAEFFLKKGGYVVIAIKA  182 (231)
T ss_pred             -----cCCchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence                 334444667888999999999988888644

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.01  E-value=0.00076  Score=59.09  Aligned_cols=90  Identities=17%  Similarity=0.271  Sum_probs=69.2

Q ss_pred             CEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           83 SLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      ..+.|+|+|+|.+.-  ....-+|++++..+.-.+.|.++       +++++.+|+....|  ...|+|+|-..--.+-.
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~  111 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALIE  111 (252)
T ss_pred             hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhhc
Confidence            689999999999753  23345999999999999999987       67899999999888  44599988553333333


Q ss_pred             hhHHHHHHHHHHhccccCcEEE
Q 018606          154 ESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      ++ ...++..+...||-++.++
T Consensus       112 E~-qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         112 EK-QVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             cc-ccHHHHHHHHHhhcCCccc
Confidence            32 4667888888888888765

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.97  E-value=0.004  Score=56.67  Aligned_cols=98  Identities=18%  Similarity=0.250  Sum_probs=72.4

Q ss_pred             CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCH----HHHHHHHHc-CCeEEEeeCCCCC---CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISP----SLIKICVDR-GHEVLVADAVNLP---YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~----~~l~~a~~~-~i~~~~~D~~~l~---~~~~~fD~Vi~  144 (353)
                      +++||++||-+|+++|.....     -|...|++++.|.    .++..|+++ |+--+.-|+..-.   ..-...|+|++
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa  232 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA  232 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence            568999999999999997643     5777999999987    467788877 7777777877522   11246777776


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .     +..+++...+.-+....||+||.++|+.-+
T Consensus       233 D-----vaqpdq~RivaLNA~~FLk~gGhfvisika  263 (317)
T KOG1596|consen  233 D-----VAQPDQARIVALNAQYFLKNGGHFVISIKA  263 (317)
T ss_pred             c-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence            4     333443455566778899999999999754

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.92  E-value=0.0054  Score=59.76  Aligned_cols=103  Identities=25%  Similarity=0.253  Sum_probs=70.5

Q ss_pred             HhCCCCCCEEEEECCccccccc--------cCCCc-----------------------------------EEEEEeCCHH
Q 018606           76 LNSLPSGSLVLDAGCGNGKYLG--------LNPDC-----------------------------------FFVGCDISPS  112 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~~--------~~~~~-----------------------------------~v~gvD~S~~  112 (353)
                      ++.-.++..++|--||+|.++.        ..||.                                   .++|+|+++.
T Consensus       186 lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r  265 (381)
T COG0116         186 LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPR  265 (381)
T ss_pred             HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHH
Confidence            4455677899999999999752        12221                                   3779999999


Q ss_pred             HHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhh-hhcCChh----HHHHHHHHHHhccccCcEEEEEE
Q 018606          113 LIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL-HHLSTES----RRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       113 ~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl-~h~~~~e----~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +++.|+.+        -|.|.++|+..++-+-+.+|+|||+--- .-+.+.+    ....+.+.+.+.++--++++++.
T Consensus       266 ~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         266 HIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            99999987        2789999999987544789999995311 1122221    12345556666666666666664

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.88  E-value=0.0027  Score=62.34  Aligned_cols=90  Identities=19%  Similarity=0.126  Sum_probs=68.2

Q ss_pred             CCEEEEECCccccccc-c---CCC-cEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCCccEEEechhh
Q 018606           82 GSLVLDAGCGNGKYLG-L---NPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAISIAVL  148 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~-~---~~~-~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~-~~~~~fD~Vi~~~vl  148 (353)
                      +-+|||+.||+|.... .   .++ ..|+++|+++..++.++++       ++.++.+|+..+- .....||+|...- +
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f  123 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F  123 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence            3589999999999742 1   224 4899999999999999876       2568888877643 1235799998854 2


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                         ..   +..++..+.+.+++||.++++.
T Consensus       124 ---Gs---~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       124 ---GT---PAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             ---CC---cHHHHHHHHHhcccCCEEEEEe
Confidence               22   3468999999999999999993

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.85  E-value=0.0027  Score=65.16  Aligned_cols=65  Identities=20%  Similarity=0.292  Sum_probs=44.7

Q ss_pred             CCEEEEECCcccccccc----C------C--CcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-----CCCC
Q 018606           82 GSLVLDAGCGNGKYLGL----N------P--DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-----YRSD  137 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~~----~------~--~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~-----~~~~  137 (353)
                      ..+|||.|||+|.++..    .      .  ...++|+|+++.++..|+.+       ++.+...|.....     -..+
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~  111 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD  111 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence            45899999999998631    1      1  25889999999999988865       2344545433211     1125


Q ss_pred             CccEEEech
Q 018606          138 FGDAAISIA  146 (353)
Q Consensus       138 ~fD~Vi~~~  146 (353)
                      .||+||.+-
T Consensus       112 ~fD~IIgNP  120 (524)
T TIGR02987       112 LFDIVITNP  120 (524)
T ss_pred             cccEEEeCC
Confidence            799999943

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.77  E-value=0.0031  Score=59.58  Aligned_cols=109  Identities=19%  Similarity=0.229  Sum_probs=75.6

Q ss_pred             hCCCCCCEEEEECCcccccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEE
Q 018606           77 NSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAA  142 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~V  142 (353)
                      ....++..|||+++|+|.=+    .. .....+++.|++..-+...+++       ++.+...|.....  .....||.|
T Consensus        81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V  160 (283)
T PF01189_consen   81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV  160 (283)
T ss_dssp             HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred             ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence            35678899999999999732    22 3367999999999988777665       3455556766652  223469999


Q ss_pred             Ee------chhhhhcCChh-------------HHHHHHHHHHhcc----ccCcEEEEEEcCCCccc
Q 018606          143 IS------IAVLHHLSTES-------------RRKKAIEELVRVV----KKGSLVLITVWAVEQED  185 (353)
Q Consensus       143 i~------~~vl~h~~~~e-------------~~~~~l~el~rvL----kpgG~lli~~~~~~~~~  185 (353)
                      +.      .+++..-++..             ...++|....+.+    ||||+++-++-+.....
T Consensus       161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eE  226 (283)
T PF01189_consen  161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEE  226 (283)
T ss_dssp             EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGG
T ss_pred             hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHH
Confidence            98      22333322211             1457899999999    99999999986655443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.77  E-value=0.0045  Score=52.16  Aligned_cols=92  Identities=23%  Similarity=0.294  Sum_probs=57.8

Q ss_pred             CCCCEEEEECCccccccc---c-----CCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCCccE
Q 018606           80 PSGSLVLDAGCGNGKYLG---L-----NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDA  141 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~---~-----~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l~~~~~~fD~  141 (353)
                      .+...|+|+|||.|.+..   .     .++..|+|+|.++.+++.+.++          .+.+..+++..... ....++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  102 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI  102 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence            566899999999998642   2     4788999999999998888776          23344444333222 345566


Q ss_pred             EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++..++=.-+.     ..+|+.+.+   ++-.+++.++.
T Consensus       103 ~vgLHaCG~Ls-----~~~l~~~~~---~~~~~l~~vpC  133 (141)
T PF13679_consen  103 LVGLHACGDLS-----DRALRLFIR---PNARFLVLVPC  133 (141)
T ss_pred             EEEeecccchH-----HHHHHHHHH---cCCCEEEEcCC
Confidence            66654333232     234554444   66666665544

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.68  E-value=0.006  Score=56.09  Aligned_cols=100  Identities=23%  Similarity=0.338  Sum_probs=64.3

Q ss_pred             CCCCCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           78 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      .+++..+|+|||||-=-++    ...++..++|+|++..+++.....      ..++...|...-+. ....|+.+..-+
T Consensus       102 ~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~-~~~~DlaLllK~  180 (251)
T PF07091_consen  102 RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP-KEPADLALLLKT  180 (251)
T ss_dssp             CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT-TSEESEEEEET-
T ss_pred             cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC-CCCcchhhHHHH
Confidence            4566789999999987654    346678999999999999887765      45778888887653 567799999988


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ++.+....  ....-++...++-. .++|+++..
T Consensus       181 lp~le~q~--~g~g~~ll~~~~~~-~~vVSfPtr  211 (251)
T PF07091_consen  181 LPCLERQR--RGAGLELLDALRSP-HVVVSFPTR  211 (251)
T ss_dssp             HHHHHHHS--TTHHHHHHHHSCES-EEEEEEES-
T ss_pred             HHHHHHHh--cchHHHHHHHhCCC-eEEEecccc
Confidence            88775432  23333444444332 566666543

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.66  E-value=0.011  Score=53.04  Aligned_cols=95  Identities=17%  Similarity=0.106  Sum_probs=68.5

Q ss_pred             CCCCEEEEECCcccccc---ccCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCC-C-CCCCCCccEEEechhh
Q 018606           80 PSGSLVLDAGCGNGKYL---GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN-L-PYRSDFGDAAISIAVL  148 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~---~~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~-l-~~~~~~fD~Vi~~~vl  148 (353)
                      ..|.+||.||-|-|...   +..+-..=+-|+..+..++..+..      ++.++.+--++ + .++++.||-|+--..-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~  179 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS  179 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence            57889999999999853   334445556789999999988876      34444443332 1 2668889999876543


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      .+..+   ...+.+.+.|+|||+|++-..
T Consensus       180 e~yEd---l~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  180 ELYED---LRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             hHHHH---HHHHHHHHhhhcCCCceEEEe
Confidence            44433   678899999999999987554

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=96.60  E-value=0.012  Score=51.95  Aligned_cols=97  Identities=21%  Similarity=0.142  Sum_probs=67.5

Q ss_pred             CCCCEEEEECCcccccc-c-cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-CCC-CCccEEEec
Q 018606           80 PSGSLVLDAGCGNGKYL-G-LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YRS-DFGDAAISI  145 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~-~-~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~~~-~~fD~Vi~~  145 (353)
                      -.|.++||+=+|+|.+- . +..| ..++.+|.+...+...+++        ...++..|+... + ... +.||+|+.-
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD  121 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD  121 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence            46889999999999974 2 3444 4999999999999999887        457788887742 1 212 259999996


Q ss_pred             hhhhh-cCChhHHHHHHHH--HHhccccCcEEEEEEc
Q 018606          146 AVLHH-LSTESRRKKAIEE--LVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h-~~~~e~~~~~l~e--l~rvLkpgG~lli~~~  179 (353)
                      --.+. +.+   ....+..  -..+|+|+|.+++..-
T Consensus       122 PPy~~~l~~---~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742         122 PPYAKGLLD---KELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             CCCccchhh---HHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            54441 111   1223333  5578999999988854

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.51  E-value=0.0012  Score=57.22  Aligned_cols=61  Identities=23%  Similarity=0.230  Sum_probs=42.2

Q ss_pred             EEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCC-ccEEEe
Q 018606           84 LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDF-GDAAIS  144 (353)
Q Consensus        84 ~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~--~~~~~-fD~Vi~  144 (353)
                      .|+|+.||.|..+..  .....|+++|+++..++.|+.+        +++++++|+.++.  +.... +|+|++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL   75 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence            699999999997542  3355899999999999999987        5789999988743  22222 788886

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.49  E-value=0.0086  Score=57.64  Aligned_cols=97  Identities=22%  Similarity=0.239  Sum_probs=71.5

Q ss_pred             CCCCCCEEEEECCccccccc---cCCC-cEEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCCC-CCCCCC
Q 018606           78 SLPSGSLVLDAGCGNGKYLG---LNPD-CFFVGCDISPSLIKICVDR--------------GHEVLVADAVNL-PYRSDF  138 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~---~~~~-~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~l-~~~~~~  138 (353)
                      .++...++|-+|.|.|--++   ..|+ .+|+-+|+.+.|++.+++.              +++++..|+.+. .-..+.
T Consensus       286 ~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~  365 (508)
T COG4262         286 SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM  365 (508)
T ss_pred             cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence            34555799999999998765   3664 4999999999999999854              467788887763 233468


Q ss_pred             ccEEEech------hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          139 GDAAISIA------VLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       139 fD~Vi~~~------vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ||+||...      ++.-+-    -.++..-+.|.|+++|++++..
T Consensus       366 fD~vIVDl~DP~tps~~rlY----S~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         366 FDVVIVDLPDPSTPSIGRLY----SVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             ccEEEEeCCCCCCcchhhhh----hHHHHHHHHHhcCcCceEEEec
Confidence            99998742      222222    2467778889999999999875

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.42  E-value=0.0072  Score=56.40  Aligned_cols=86  Identities=20%  Similarity=0.259  Sum_probs=60.5

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCC---CCccEEEechhh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS---DFGDAAISIAVL  148 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~---~~fD~Vi~~~vl  148 (353)
                      +.++..|||||+|+|.++..  ..+..++++|+++.+++..+++     +++++.+|+..+....   .....|+++--.
T Consensus        28 ~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy  107 (262)
T PF00398_consen   28 LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY  107 (262)
T ss_dssp             CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred             CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEecc
Confidence            44789999999999999763  3337999999999999999984     6899999999987654   333455554322


Q ss_pred             hhcCChhHHHHHHHHHHhcccc
Q 018606          149 HHLSTESRRKKAIEELVRVVKK  170 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkp  170 (353)
                       ++.     ..++.++...-+.
T Consensus       108 -~is-----~~il~~ll~~~~~  123 (262)
T PF00398_consen  108 -NIS-----SPILRKLLELYRF  123 (262)
T ss_dssp             -TGH-----HHHHHHHHHHGGG
T ss_pred             -cch-----HHHHHHHhhcccc
Confidence             222     3456666653333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.40  E-value=0.0057  Score=57.69  Aligned_cols=126  Identities=13%  Similarity=0.152  Sum_probs=77.4

Q ss_pred             HHHHHHHhhccccccccccChHHHHHHHhCCCC-------CCEEEEECCccccccc--cCCCcEEEEEeCCHHHH-----
Q 018606           49 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPS-------GSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLI-----  114 (353)
Q Consensus        49 ~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l~~-------~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l-----  114 (353)
                      .+..++..++..+...|...++.++..|..+-|       ...||=-|||.|+++-  ...|..+-|-++|--|+     
T Consensus       111 ~l~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~F  190 (369)
T KOG2798|consen  111 TLKQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSF  190 (369)
T ss_pred             HHHHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHH
Confidence            334444445554555677777777777765543       3589999999999863  23344555556655553     


Q ss_pred             --HHHHHc----------------------------------------CCeEEEeeCCCCC---CCCCCccEEEechhhh
Q 018606          115 --KICVDR----------------------------------------GHEVLVADAVNLP---YRSDFGDAAISIAVLH  149 (353)
Q Consensus       115 --~~a~~~----------------------------------------~i~~~~~D~~~l~---~~~~~fD~Vi~~~vl~  149 (353)
                        ..++..                                        .+....||+...-   -..+.||+|+.++.|.
T Consensus       191 iLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID  270 (369)
T KOG2798|consen  191 ILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID  270 (369)
T ss_pred             HHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee
Confidence              222211                                        1122334444421   1124799999987665


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      --.+   ..+.|..+..+|||||+.+=.
T Consensus       271 Ta~N---ileYi~tI~~iLk~GGvWiNl  295 (369)
T KOG2798|consen  271 TAHN---ILEYIDTIYKILKPGGVWINL  295 (369)
T ss_pred             chHH---HHHHHHHHHHhccCCcEEEec
Confidence            4444   789999999999999987533

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.22  E-value=0.0041  Score=62.23  Aligned_cols=96  Identities=17%  Similarity=0.165  Sum_probs=68.7

Q ss_pred             CEEEEECCccccccccCCCcEEEEEe----CCHHHHHHHHHcCC-eEEEeeCCCCCCCCCCccEEEechhhhhcCChhHH
Q 018606           83 SLVLDAGCGNGKYLGLNPDCFFVGCD----ISPSLIKICVDRGH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR  157 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~~~~~~~v~gvD----~S~~~l~~a~~~~i-~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~  157 (353)
                      ..|+|..+|.|.|+.+.....|..+-    ..++-+...-++|+ -+.+.=.+.++.-+.+||+|.+.++|.+..+.-..
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~  446 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEM  446 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccH
Confidence            58999999999998652222222222    23344555555553 23333345577668999999999999888776667


Q ss_pred             HHHHHHHHhccccCcEEEEEE
Q 018606          158 KKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       158 ~~~l~el~rvLkpgG~lli~~  178 (353)
                      ..+|-||-|+|||||.++|-+
T Consensus       447 ~~illEmDRILRP~G~~iiRD  467 (506)
T PF03141_consen  447 EDILLEMDRILRPGGWVIIRD  467 (506)
T ss_pred             HHHHHHhHhhcCCCceEEEec
Confidence            899999999999999999975

; GO: 0008168 methyltransferase activity

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.16  E-value=0.021  Score=57.09  Aligned_cols=93  Identities=19%  Similarity=0.283  Sum_probs=66.4

Q ss_pred             CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC---CCCccEEEechh
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGDAAISIAV  147 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~---~~~fD~Vi~~~v  147 (353)
                      .++.++||+=||.|.+...  ....+|+|+|+++.+++.|+++       |+.|..++++.+...   ...+|+|+..- 
T Consensus       292 ~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP-  370 (432)
T COG2265         292 AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP-  370 (432)
T ss_pred             cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC-
Confidence            4667999999999998643  4556999999999999999886       578899998886532   35789998731 


Q ss_pred             hhhcCChhHH-HHHHHHHHhccccCcEEEEEEc
Q 018606          148 LHHLSTESRR-KKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       148 l~h~~~~e~~-~~~l~el~rvLkpgG~lli~~~  179 (353)
                           +..-. ..+++.+.+ ++|-.+++|+.-
T Consensus       371 -----PR~G~~~~~lk~l~~-~~p~~IvYVSCN  397 (432)
T COG2265         371 -----PRAGADREVLKQLAK-LKPKRIVYVSCN  397 (432)
T ss_pred             -----CCCCCCHHHHHHHHh-cCCCcEEEEeCC
Confidence                 11111 244555544 467777777753

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.15  E-value=0.021  Score=50.87  Aligned_cols=96  Identities=19%  Similarity=0.318  Sum_probs=58.3

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCCCCCCCCCccEE
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      ....+.|||||-|.++-    ..|...++|+++-....++.+++              ++.+...++...  -.+.|.--
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kg  137 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKG  137 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhc
Confidence            44679999999998753    47888999999988877776665              344444443321  11111111


Q ss_pred             EechhhhhcCChhH----------HHHHHHHHHhccccCcEEEEEE
Q 018606          143 ISIAVLHHLSTESR----------RKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       143 i~~~vl~h~~~~e~----------~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ...-.++.++++.-          -..++.+..-+|++||.++..+
T Consensus       138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            11111111222100          1357888899999999998775

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=96.10  E-value=0.022  Score=48.00  Aligned_cols=80  Identities=23%  Similarity=0.218  Sum_probs=54.2

Q ss_pred             EEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCCccEEEechhhhhcCC--------hhHHHHHHHHH
Q 018606          103 FFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAISIAVLHHLST--------ESRRKKAIEEL  164 (353)
Q Consensus       103 ~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~--~~~~~fD~Vi~~~vl~h~~~--------~e~~~~~l~el  164 (353)
                      +|+|+|+-+.+++..+++        +++++...-.++.  .+.+.+|+++.+.  .++|.        ++.-..+|+.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence            589999999999999887        4778887766654  2334788887642  23332        23356889999


Q ss_pred             HhccccCcEEEEEEcCCCcc
Q 018606          165 VRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       165 ~rvLkpgG~lli~~~~~~~~  184 (353)
                      .++|+|||++.|..+.....
T Consensus        79 l~lL~~gG~i~iv~Y~GH~g   98 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGHPG   98 (140)
T ss_dssp             HHHEEEEEEEEEEE--STCH
T ss_pred             HHhhccCCEEEEEEeCCCCC
Confidence            99999999999999886653

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.09  E-value=0.023  Score=50.26  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=64.7

Q ss_pred             hCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCH----------HHHHHHHHc---CCeEEEeeCCCCCCCCCC
Q 018606           77 NSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISP----------SLIKICVDR---GHEVLVADAVNLPYRSDF  138 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~----------~~l~~a~~~---~i~~~~~D~~~l~~~~~~  138 (353)
                      ..+++|++|+|+=.|.|.+++.     .+...|++.=..+          .+-..+++.   +.+.+-.+...++ +...
T Consensus        44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~  122 (238)
T COG4798          44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK  122 (238)
T ss_pred             eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence            3689999999999999998764     3445777664433          233333333   4555555555555 3444


Q ss_pred             ccEEEechhhhhcCC----hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          139 GDAAISIAVLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       139 fD~Vi~~~vl~h~~~----~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .|++.....-|-+..    ......+..++++.|||||.+++..-.
T Consensus       123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~  168 (238)
T COG4798         123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR  168 (238)
T ss_pred             ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence            566555322221110    112578899999999999999998643

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.05  E-value=0.021  Score=52.04  Aligned_cols=93  Identities=17%  Similarity=0.249  Sum_probs=66.1

Q ss_pred             CCCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHcCCeEEEe---eCCCCC---CCCCCccEEEechhhh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDRGHEVLVA---DAVNLP---YRSDFGDAAISIAVLH  149 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~---D~~~l~---~~~~~fD~Vi~~~vl~  149 (353)
                      ..++..+||||+-||.|+..  ..| ..|+|+|..-..+..--+...+++..   |+..+.   +. +..|++++--++.
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFI  155 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFI  155 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehh
Confidence            35789999999999999753  444 49999999987776655554444333   333332   22 3568888876554


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .      ...+|..+..+|+|+|.++.-+
T Consensus       156 S------L~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         156 S------LKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             h------HHHHHHHHHHhcCCCceEEEEe
Confidence            2      4678999999999999887775

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=95.96  E-value=0.017  Score=56.36  Aligned_cols=48  Identities=23%  Similarity=0.296  Sum_probs=36.3

Q ss_pred             EEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC
Q 018606           84 LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN  131 (353)
Q Consensus        84 ~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~  131 (353)
                      .|||+-||.|.+...  ....+|+|+|.++.+++.|+++       +++|+.+++.+
T Consensus       199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED  255 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred             cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence            899999999998542  4456999999999999999876       57888877654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.92  E-value=0.015  Score=55.72  Aligned_cols=99  Identities=26%  Similarity=0.268  Sum_probs=62.5

Q ss_pred             CEEEEECCcccccccc----CCCc-EEEEEeCCHHHHHHHHHc--CC---------eEEEeeCCCCCCCCCCccEEEech
Q 018606           83 SLVLDAGCGNGKYLGL----NPDC-FFVGCDISPSLIKICVDR--GH---------EVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~~----~~~~-~v~gvD~S~~~l~~a~~~--~i---------~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+|||+|.|+|.-+-+    .|.. .++-++.|+.+-++.-..  ++         .-++.|-..+|. ...|++||...
T Consensus       115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl~i~~~  193 (484)
T COG5459         115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTLAIVLD  193 (484)
T ss_pred             chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeehhhhhh
Confidence            4699999999985432    3443 666777888765554332  11         123333333443 34566666666


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      -|-+...+......+..+..++.|||.|+|......
T Consensus       194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            555555443345589999999999999999976543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.84  E-value=0.038  Score=53.34  Aligned_cols=93  Identities=14%  Similarity=0.222  Sum_probs=66.6

Q ss_pred             hCCCCCCEEEEECCcccc--ccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC--CCCCCCCccEEEechhhh
Q 018606           77 NSLPSGSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN--LPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~--~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~--l~~~~~~fD~Vi~~~vl~  149 (353)
                      ..+.||.+|+=+|+| |.  ++.   ...+++|+++|.|++-++.|++.+.+.+......  +..-.+.||+|+.... .
T Consensus       162 ~~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~  239 (339)
T COG1064         162 ANVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P  239 (339)
T ss_pred             cCCCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h
Confidence            467899999999999 65  221   2456999999999999999999976554432211  1111224999998654 2


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                               ..+....+.||+||++++.-..
T Consensus       240 ---------~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         240 ---------ATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             ---------hhHHHHHHHHhcCCEEEEECCC
Confidence                     3567788899999999988654

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=95.73  E-value=0.0055  Score=48.61  Aligned_cols=89  Identities=13%  Similarity=0.091  Sum_probs=41.5

Q ss_pred             EEECCccccccc----c-CCC--cEEEEEeCCH---HHHHHHHHc----CCeEEEeeCCCC--CCCCCCccEEEechhhh
Q 018606           86 LDAGCGNGKYLG----L-NPD--CFFVGCDISP---SLIKICVDR----GHEVLVADAVNL--PYRSDFGDAAISIAVLH  149 (353)
Q Consensus        86 LDvGCG~G~~~~----~-~~~--~~v~gvD~S~---~~l~~a~~~----~i~~~~~D~~~l--~~~~~~fD~Vi~~~vl~  149 (353)
                      ||||+..|..+.    . .+.  .+++++|..+   ...+..++.    +++++.++....  .++..++|+++.-+.  
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~--   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD--   78 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence            689988887542    1 222  3899999999   455555532    578888887642  133578999988762  


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      |-  .+.....+..+.+.|+|||.+++-+
T Consensus        79 H~--~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   79 HS--YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            21  1225678999999999999998754

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=95.65  E-value=0.016  Score=48.35  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=30.8

Q ss_pred             EEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc
Q 018606           84 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        84 ~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      ++||||||.|.++.    ..+..+++++|+++.+.+.++++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~   41 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN   41 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence            48999999999743    35566999999999999988775

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=95.45  E-value=0.022  Score=57.17  Aligned_cols=55  Identities=24%  Similarity=0.366  Sum_probs=45.0

Q ss_pred             hCCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN  131 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~  131 (353)
                      ..++.+..+||+.||||.+-.  ..+-..|+|+++++..++.|+.+       |.+|+++-+++
T Consensus       379 ~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~  442 (534)
T KOG2187|consen  379 AGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED  442 (534)
T ss_pred             hCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence            367888999999999999743  34446999999999999999887       57899985554

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=95.10  E-value=0.079  Score=52.12  Aligned_cols=50  Identities=16%  Similarity=0.147  Sum_probs=37.1

Q ss_pred             CCCCCccEEEechhhhhcCCh-h----------------------------------HHHHHHHHHHhccccCcEEEEEE
Q 018606          134 YRSDFGDAAISIAVLHHLSTE-S----------------------------------RRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       134 ~~~~~fD~Vi~~~vl~h~~~~-e----------------------------------~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ||+++.+++++.+++||++.. +                                  +...+|+-=.+-|.|||+++++.
T Consensus       158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~  237 (386)
T PLN02668        158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC  237 (386)
T ss_pred             cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence            788999999999999998731 0                                  02234444456688999999999


Q ss_pred             cCCCc
Q 018606          179 WAVEQ  183 (353)
Q Consensus       179 ~~~~~  183 (353)
                      .+...
T Consensus       238 ~Gr~~  242 (386)
T PLN02668        238 LGRTS  242 (386)
T ss_pred             ecCCC
Confidence            87643

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=94.93  E-value=0.058  Score=51.67  Aligned_cols=135  Identities=19%  Similarity=0.170  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhhcccccc-ccc-cChHHHHHHHhCCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-
Q 018606           46 EKKYVHRVYDAIAPHFSS-TRF-AKWPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-  120 (353)
Q Consensus        46 e~~~v~~~yd~~a~~y~~-~~~-~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-  120 (353)
                      .+..+.+-|+--...|-. |.. ....-+..-++...||..|+|-=.|||.++-  ..-|+.|+|.|+.-.|+...|.. 
T Consensus       171 g~R~li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~  250 (421)
T KOG2671|consen  171 GQRELIEKYDLKKRCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGED  250 (421)
T ss_pred             chHhHhhhcccccccccCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCC
Confidence            344555566655555543 222 2233444455678999999999999999864  46678999999999888743221 


Q ss_pred             ---------------CCeEEEeeCCCCCCCC-CCccEEEech------------------------hhhhcCChh-----
Q 018606          121 ---------------GHEVLVADAVNLPYRS-DFGDAAISIA------------------------VLHHLSTES-----  155 (353)
Q Consensus       121 ---------------~i~~~~~D~~~l~~~~-~~fD~Vi~~~------------------------vl~h~~~~e-----  155 (353)
                                     -+.++.+|..+-|+.. ..||+|+|--                        .-.|.+..+     
T Consensus       251 ~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~  330 (421)
T KOG2671|consen  251 ESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLS  330 (421)
T ss_pred             cchhHhHHHhCCcchhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHH
Confidence                           2578899999988665 4899999921                        112333211     


Q ss_pred             -HHHHHHHHHHhccccCcEEEEEEcC
Q 018606          156 -RRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       156 -~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                       .....|.-..+.|..||++++-.+.
T Consensus       331 ~~v~dll~fss~~L~~ggrlv~w~p~  356 (421)
T KOG2671|consen  331 SLVYDLLCFSSRRLVDGGRLVFWLPT  356 (421)
T ss_pred             HHHhhHHHhhHhhhhcCceEEEecCc
Confidence             1345566678889999998877653

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=94.87  E-value=0.042  Score=48.67  Aligned_cols=90  Identities=18%  Similarity=0.148  Sum_probs=60.0

Q ss_pred             CCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           80 PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      -.|.+|||+|+|+|.-..  ...| ..|+..|+.+..+...+-+      ++.+...|...   .+..||+++...++..
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~  154 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN  154 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence            467899999999998643  2333 4889999987766555443      35566666554   4678999999887654


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEE
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLI  176 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli  176 (353)
                      -+-   -.+++. ..+.|+..|..++
T Consensus       155 ~~~---a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         155 HTE---ADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             chH---HHHHHH-HHHHHHhCCCEEE
Confidence            332   345666 5555555555554

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.86  E-value=0.013  Score=50.22  Aligned_cols=100  Identities=13%  Similarity=0.056  Sum_probs=67.4

Q ss_pred             CCCEEEEECCccccc----cc-cCCCcEEEEEeCCHHHHHHHHHc---CC-------eEEEeeCCC--CCCCCCCccEEE
Q 018606           81 SGSLVLDAGCGNGKY----LG-LNPDCFFVGCDISPSLIKICVDR---GH-------EVLVADAVN--LPYRSDFGDAAI  143 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~----~~-~~~~~~v~gvD~S~~~l~~a~~~---~i-------~~~~~D~~~--l~~~~~~fD~Vi  143 (353)
                      .|..||++|.|--.+    +. ..+...|.-.|-++..++-.++.   +.       .++.-+...  .......||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            457899999984333    22 36778999999999888776654   21       111111111  112346899999


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +..++..-   |.+..+++-|.+.|+|.|..++..+-..+
T Consensus       109 aADClFfd---E~h~sLvdtIk~lL~p~g~Al~fsPRRg~  145 (201)
T KOG3201|consen  109 AADCLFFD---EHHESLVDTIKSLLRPSGRALLFSPRRGQ  145 (201)
T ss_pred             eccchhHH---HHHHHHHHHHHHHhCcccceeEecCcccc
Confidence            99887642   33678899999999999998887655443

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=94.81  E-value=0.074  Score=47.84  Aligned_cols=88  Identities=14%  Similarity=0.119  Sum_probs=56.1

Q ss_pred             EEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCC-CccEEEechhhhhc
Q 018606           85 VLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSD-FGDAAISIAVLHHL  151 (353)
Q Consensus        85 VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~-~fD~Vi~~~vl~h~  151 (353)
                      |+||||-.|.+..    ...--+++++|+++.-++.|++.        .+++..+|.... +..+ ..|.|+..++=.. 
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~-   78 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGE-   78 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HH-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHH-
Confidence            6899999998642    23334899999999999999886        478999997652 2233 3688877664222 


Q ss_pred             CChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          152 STESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       152 ~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                          .....|.+....++..-.|++.-
T Consensus        79 ----lI~~ILe~~~~~~~~~~~lILqP  101 (205)
T PF04816_consen   79 ----LIIEILEAGPEKLSSAKRLILQP  101 (205)
T ss_dssp             ----HHHHHHHHTGGGGTT--EEEEEE
T ss_pred             ----HHHHHHHhhHHHhccCCeEEEeC
Confidence                14567777777776666776664

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.65  E-value=0.26  Score=47.06  Aligned_cols=100  Identities=16%  Similarity=0.158  Sum_probs=72.1

Q ss_pred             HhCCCCCCEEEEECCcc-cccc----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----------CCCCCCc
Q 018606           76 LNSLPSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----------PYRSDFG  139 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~-G~~~----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----------~~~~~~f  139 (353)
                      +..+++|++||=+|+|+ |.++    ....-.+|+.+|+++.-++.|++.+.+.+.-+....           -+....+
T Consensus       164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~  243 (354)
T KOG0024|consen  164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQP  243 (354)
T ss_pred             hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCC
Confidence            34678999999999997 4432    234456999999999999999998776655433321           1223458


Q ss_pred             cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          140 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       140 D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      |+.+....++         ..++.....||+||.+++..|..+..
T Consensus       244 d~~~dCsG~~---------~~~~aai~a~r~gGt~vlvg~g~~~~  279 (354)
T KOG0024|consen  244 DVTFDCSGAE---------VTIRAAIKATRSGGTVVLVGMGAEEI  279 (354)
T ss_pred             CeEEEccCch---------HHHHHHHHHhccCCEEEEeccCCCcc
Confidence            8888876543         45566678899999998888886654

>KOG2730 consensus Methylase [General function prediction only]

Probab=94.59  E-value=0.022  Score=51.34  Aligned_cols=66  Identities=18%  Similarity=0.200  Sum_probs=50.0

Q ss_pred             CCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC----CCCCCCccEEEech
Q 018606           81 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL----PYRSDFGDAAISIA  146 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l----~~~~~~fD~Vi~~~  146 (353)
                      ....|+|.-||-|..+.  ...+..|+++|+++--+..|+.+        .++|+++|+.++    .+....+|+|+.+.
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp  173 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP  173 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence            44689999888877643  36778999999999999999987        578999998763    34444566776644

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.33  E-value=0.22  Score=50.86  Aligned_cols=97  Identities=20%  Similarity=0.171  Sum_probs=68.4

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----------C----------C
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----------P----------Y  134 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----------~----------~  134 (353)
                      .++.+|+=+|||.=.+..    ...|+.|+++|.++.-++.+++.+.++...|..+.           .          +
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            468899999999844322    25567899999999999999999888665443221           0          0


Q ss_pred             CC--CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          135 RS--DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       135 ~~--~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .+  ..+|+||.......-+.   +..+.+++.+.+||||+++....
T Consensus       243 ~~~~~gaDVVIetag~pg~~a---P~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        243 AEQAKEVDIIITTALIPGKPA---PKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HhccCCCCEEEECCCCCcccC---cchHHHHHHHhcCCCCEEEEEcc
Confidence            11  35899999876543333   22335999999999999876643

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=94.23  E-value=0.22  Score=49.09  Aligned_cols=104  Identities=15%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             CCCCCEEEEECCcccccc----cc-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCCCccEEE
Q 018606           79 LPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAI  143 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~----~~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~---~~~~~fD~Vi  143 (353)
                      ..+|.+|||+++-+|.=+    .+ ...+.|++.|.+.+-++..+.+       +..+...|...+|   ++. +||-|+
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL  317 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL  317 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence            357899999999998732    22 3446999999999888776665       3345666776665   433 889888


Q ss_pred             e----ch--hhhh------cCC-------hhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          144 S----IA--VLHH------LST-------ESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       144 ~----~~--vl~h------~~~-------~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .    ++  ++.-      ..+       .....++|......+++||+|+-++-+..-
T Consensus       318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~  376 (460)
T KOG1122|consen  318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV  376 (460)
T ss_pred             ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence            5    22  1110      000       011457888889999999999988766543

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=93.99  E-value=0.035  Score=44.58  Aligned_cols=41  Identities=10%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             CccEEEechhhhhcC---ChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          138 FGDAAISIAVLHHLS---TESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~---~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .||+|+|..|.-|+.   .++....+++.+++.|+|||.|++..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence            489999988754432   23447889999999999999999884

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=93.90  E-value=0.13  Score=49.07  Aligned_cols=75  Identities=16%  Similarity=0.123  Sum_probs=50.7

Q ss_pred             HHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC-----CC
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----YR  135 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~-----~~  135 (353)
                      .+...+ .+.++..++|.=||.|..+.    ..+.+.|+|+|.++.+++.++++      ++.++++++.++.     ..
T Consensus        11 Evl~~L-~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~   89 (305)
T TIGR00006        11 EVVEGL-NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELL   89 (305)
T ss_pred             HHHHhc-CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcC
Confidence            334444 24577899999999999753    23458999999999999999875      3556666655432     12


Q ss_pred             CCCccEEEech
Q 018606          136 SDFGDAAISIA  146 (353)
Q Consensus       136 ~~~fD~Vi~~~  146 (353)
                      ...+|.|+...
T Consensus        90 ~~~vDgIl~DL  100 (305)
T TIGR00006        90 VTKIDGILVDL  100 (305)
T ss_pred             CCcccEEEEec
Confidence            24566666533

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=93.86  E-value=0.11  Score=49.43  Aligned_cols=82  Identities=20%  Similarity=0.145  Sum_probs=43.2

Q ss_pred             HHHHHHHhCCCC----CCEEEEECCccccc---cc-cCCCcEEEEEeCCHHHHHHHHHc---C------CeEEEeeCCC-
Q 018606           70 PKVATFLNSLPS----GSLVLDAGCGNGKY---LG-LNPDCFFVGCDISPSLIKICVDR---G------HEVLVADAVN-  131 (353)
Q Consensus        70 ~~~~~~l~~l~~----~~~VLDvGCG~G~~---~~-~~~~~~v~gvD~S~~~l~~a~~~---~------i~~~~~D~~~-  131 (353)
                      ..+..+|....+    .-++||||+|..-.   +. ...+.+++|+|+++..++.|++.   +      |+++...-.. 
T Consensus        87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~  166 (299)
T PF05971_consen   87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDN  166 (299)
T ss_dssp             HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-S
T ss_pred             HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccc
Confidence            345566654332    45899999998643   22 24578999999999999999986   3      5665442211 


Q ss_pred             ----CCCCCCCccEEEechhhhhc
Q 018606          132 ----LPYRSDFGDAAISIAVLHHL  151 (353)
Q Consensus       132 ----l~~~~~~fD~Vi~~~vl~h~  151 (353)
                          +....+.||+.+|.--++--
T Consensus       167 i~~~i~~~~e~~dftmCNPPFy~s  190 (299)
T PF05971_consen  167 IFDGIIQPNERFDFTMCNPPFYSS  190 (299)
T ss_dssp             STTTSTT--S-EEEEEE-----SS
T ss_pred             cchhhhcccceeeEEecCCccccC
Confidence                22234689999997766543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.80  E-value=0.28  Score=48.09  Aligned_cols=99  Identities=22%  Similarity=0.335  Sum_probs=65.4

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHc-CCeEEEeeCCC-C-----CC-CCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVN-L-----PY-RSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~-l-----~~-~~~~fD~Vi  143 (353)
                      ..+.++.+||.+|||. |..+.   ...+. .++++|.++..++.+++. +..++...-.. +     .+ ....+|+|+
T Consensus       180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vl  259 (386)
T cd08283         180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCI  259 (386)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence            3567889999999987 66542   23454 699999999999999987 55443221111 1     11 223689988


Q ss_pred             echhh-----------hhc----CChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          144 SIAVL-----------HHL----STESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       144 ~~~vl-----------~h~----~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ....-           .|.    .+   ....+.++.+.|+++|++++..
T Consensus       260 d~vg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         260 DAVGMEAHGSPLHKAEQALLKLETD---RPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             ECCCCcccccccccccccccccccC---chHHHHHHHHHhccCCEEEEEc
Confidence            85321           111    11   2457899999999999998874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=93.65  E-value=0.42  Score=45.23  Aligned_cols=94  Identities=16%  Similarity=0.186  Sum_probs=64.2

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC------CCCCCCccEEEechh
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------PYRSDFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l------~~~~~~fD~Vi~~~v  147 (353)
                      .+.++.+||..|+|. |.++.   ...+..|++++.++...+.+++.+++.+..+-...      ......+|+++....
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g  241 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG  241 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC
Confidence            467788999888763 55432   25577899999999999999877765443322111      123456898876421


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                           .    ...+.++.+.|+++|+++...+.
T Consensus       242 -----~----~~~~~~~~~~l~~~G~~v~~g~~  265 (338)
T cd08254         242 -----T----QPTFEDAQKAVKPGGRIVVVGLG  265 (338)
T ss_pred             -----C----HHHHHHHHHHhhcCCEEEEECCC
Confidence                 1    24678889999999999887543

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=93.50  E-value=0.48  Score=43.68  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=70.5

Q ss_pred             HHHhCCCCCCEEEEECCccccccc--------cCCCcEEEEEeCCHHHHHHHHHc------CCe--EEEeeCCC----CC
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR------GHE--VLVADAVN----LP  133 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~--------~~~~~~v~gvD~S~~~l~~a~~~------~i~--~~~~D~~~----l~  133 (353)
                      .-+.....+..++|+|+|+..-++        ...-.+++.+|+|...++...+.      +++  -+.+|.+.    +|
T Consensus        71 ~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~  150 (321)
T COG4301          71 AEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP  150 (321)
T ss_pred             HHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc
Confidence            334445557899999999986322        12335999999999988654332      333  34555542    33


Q ss_pred             CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       134 ~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                       ..++-=.++...+|..+.+.+ ...+|.++..+|+||-.+++-+=
T Consensus       151 -~~~~Rl~~flGStlGN~tp~e-~~~Fl~~l~~a~~pGd~~LlGvD  194 (321)
T COG4301         151 -RGGRRLFVFLGSTLGNLTPGE-CAVFLTQLRGALRPGDYFLLGVD  194 (321)
T ss_pred             -CCCeEEEEEecccccCCChHH-HHHHHHHHHhcCCCcceEEEecc
Confidence             223333455566888887666 68899999999999999998863

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=93.45  E-value=0.11  Score=52.47  Aligned_cols=94  Identities=12%  Similarity=0.248  Sum_probs=73.7

Q ss_pred             CEEEEECCccccccc--------cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           83 SLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~--------~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      .+|+=+|+|-|-+..        .....++++++-+++++-..+.+       .++++..|+..++.+....|++++ ..
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-EL  447 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-EL  447 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-Hh
Confidence            367889999998742        25578999999999988776655       578999999999865678898876 34


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      |..+.+.|.-.++|.-+.+.|||+|+.+=.
T Consensus       448 LGSFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  448 LGSFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence            555666665678999999999999886543

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=93.41  E-value=0.39  Score=46.54  Aligned_cols=103  Identities=14%  Similarity=0.084  Sum_probs=56.0

Q ss_pred             CCCEEEEECCccccccc--------------------cCCCcEEEEEeCCHHHH-----------HHHHHcCCeE---EE
Q 018606           81 SGSLVLDAGCGNGKYLG--------------------LNPDCFFVGCDISPSLI-----------KICVDRGHEV---LV  126 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--------------------~~~~~~v~gvD~S~~~l-----------~~a~~~~i~~---~~  126 (353)
                      ..-+|+|+||..|..+-                    ..|...|+--|+-.+=-           +.....+--|   +-
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp   95 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP   95 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence            33599999999998531                    01336888888743211           1111112222   23


Q ss_pred             eeCCCCCCCCCCccEEEechhhhhcCCh------------------------------------hHHHHHHHHHHhcccc
Q 018606          127 ADAVNLPYRSDFGDAAISIAVLHHLSTE------------------------------------SRRKKAIEELVRVVKK  170 (353)
Q Consensus       127 ~D~~~l~~~~~~fD~Vi~~~vl~h~~~~------------------------------------e~~~~~l~el~rvLkp  170 (353)
                      +.+-.--+|+++.|++++..+|||++..                                    .+...+|+-=.+-|+|
T Consensus        96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~  175 (334)
T PF03492_consen   96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP  175 (334)
T ss_dssp             S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence            3444434789999999999999998631                                    0123344444566789


Q ss_pred             CcEEEEEEcCCCc
Q 018606          171 GSLVLITVWAVEQ  183 (353)
Q Consensus       171 gG~lli~~~~~~~  183 (353)
                      ||++++...+...
T Consensus       176 GG~mvl~~~gr~~  188 (334)
T PF03492_consen  176 GGRMVLTFLGRDE  188 (334)
T ss_dssp             EEEEEEEEEE-ST
T ss_pred             CcEEEEEEeeccc
Confidence            9999999987665

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=93.16  E-value=0.027  Score=45.07  Aligned_cols=29  Identities=28%  Similarity=0.251  Sum_probs=21.5

Q ss_pred             CCCEEEEECCccccccc--cCCCcEEEEEeC
Q 018606           81 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDI  109 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~  109 (353)
                      +....+|||||||.+.-  ..-|..=.|+|.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~   88 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDA   88 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence            34579999999999753  355666788885

; GO: 0008168 methyltransferase activity

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=92.99  E-value=0.08  Score=45.50  Aligned_cols=48  Identities=21%  Similarity=0.241  Sum_probs=38.6

Q ss_pred             CCCccEEEechhhhhcC--------ChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          136 SDFGDAAISIAVLHHLS--------TESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       136 ~~~fD~Vi~~~vl~h~~--------~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .++||++.|..+|+|+.        ++..-.+.+.++.++|||||.+++.++-..+
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d  116 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD  116 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence            46899999999999863        1222467899999999999999999987654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.86  E-value=0.39  Score=46.18  Aligned_cols=92  Identities=17%  Similarity=0.237  Sum_probs=60.2

Q ss_pred             CCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEe----eCCCCCCCCCCccEEEechhhh
Q 018606           79 LPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVA----DAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        79 l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~----D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      ..++.+||=+|||. |.++.   ...+. .|+++|.++.-++.+++.+.+.+..    ++..+....+.+|+|+....  
T Consensus       167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--  244 (343)
T PRK09880        167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--  244 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC--
Confidence            34688899899864 33321   24566 7999999999999999887654321    11111111234888877532  


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                         .    ...+....+.|++||++++.-.
T Consensus       245 ---~----~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        245 ---H----PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             ---C----HHHHHHHHHHhhcCCEEEEEcc
Confidence               2    2457778889999999987753

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=92.73  E-value=1.1  Score=45.85  Aligned_cols=134  Identities=17%  Similarity=0.237  Sum_probs=83.6

Q ss_pred             HHHHHHHHhhccccccc------cccChHHHHHHHhC---CCCCCEEEEECCcccccccc-------CC-CcEEEEEeCC
Q 018606           48 KYVHRVYDAIAPHFSST------RFAKWPKVATFLNS---LPSGSLVLDAGCGNGKYLGL-------NP-DCFFVGCDIS  110 (353)
Q Consensus        48 ~~v~~~yd~~a~~y~~~------~~~~~~~~~~~l~~---l~~~~~VLDvGCG~G~~~~~-------~~-~~~v~gvD~S  110 (353)
                      +.+..+|+.+...|...      .+-..+.+..++..   ..+..+|+|..||+|.++..       .. ...++|.|+.
T Consensus       144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~  223 (489)
T COG0286         144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN  223 (489)
T ss_pred             cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence            34555666655555432      23334445444442   24667999999999987531       11 3789999999


Q ss_pred             HHHHHHHHHc----CCe----EEEeeCCCCCC-----CCCCccEEEechhhh---hc------------------CCh-h
Q 018606          111 PSLIKICVDR----GHE----VLVADAVNLPY-----RSDFGDAAISIAVLH---HL------------------STE-S  155 (353)
Q Consensus       111 ~~~l~~a~~~----~i~----~~~~D~~~l~~-----~~~~fD~Vi~~~vl~---h~------------------~~~-e  155 (353)
                      ......|+-+    ++.    ...+|-..-|.     ..+.||+|++.--+.   +.                  +.. .
T Consensus       224 ~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (489)
T COG0286         224 DTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNS  303 (489)
T ss_pred             HHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCc
Confidence            9999999886    443    34444444342     236799988843221   11                  111 1


Q ss_pred             HHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          156 RRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       156 ~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .-..+++.+...|+|||++.|..+..
T Consensus       304 ~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         304 ADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             hHHHHHHHHHHhcCCCceEEEEecCC
Confidence            02678999999999999877776553

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.66  E-value=0.5  Score=42.71  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=64.8

Q ss_pred             HHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEE
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      ....++.+..+.||||-.|.+..    ..+...+++.|+++..++.|.+.        .+++..+|....--.+..+|+|
T Consensus        10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~i   89 (226)
T COG2384          10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVI   89 (226)
T ss_pred             HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEE
Confidence            33344566679999999998643    35667999999999999999876        3567777774422334478888


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      +..++=.-+     ....|.+-.+.|+.==++++.
T Consensus        90 vIAGMGG~l-----I~~ILee~~~~l~~~~rlILQ  119 (226)
T COG2384          90 VIAGMGGTL-----IREILEEGKEKLKGVERLILQ  119 (226)
T ss_pred             EEeCCcHHH-----HHHHHHHhhhhhcCcceEEEC
Confidence            776642211     456677776666533344443

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=92.30  E-value=0.37  Score=43.44  Aligned_cols=93  Identities=19%  Similarity=0.275  Sum_probs=55.0

Q ss_pred             CEEEEECCccccccc---c-CCC--cEEEEEeCCHHHHHHHHHc------------------------------------
Q 018606           83 SLVLDAGCGNGKYLG---L-NPD--CFFVGCDISPSLIKICVDR------------------------------------  120 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~---~-~~~--~~v~gvD~S~~~l~~a~~~------------------------------------  120 (353)
                      -++.|-+||.|.++.   + .+.  ..|+|.|+++.++++|+++                                    
T Consensus        53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~  132 (246)
T PF11599_consen   53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD  132 (246)
T ss_dssp             EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            589999999999763   1 222  4899999999999999864                                    


Q ss_pred             -------------CCeEEEeeCCC------CCCCCCCccEEEechhhhhcCC------hhHHHHHHHHHHhccccCcEEE
Q 018606          121 -------------GHEVLVADAVN------LPYRSDFGDAAISIAVLHHLST------ESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       121 -------------~i~~~~~D~~~------l~~~~~~fD~Vi~~~vl~h~~~------~e~~~~~l~el~rvLkpgG~ll  175 (353)
                                   ...+.+.|+.+      ++. ....|+|+.----.++.+      .+-...+|..+..+|-.++++.
T Consensus       133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~-~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~  211 (246)
T PF11599_consen  133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDA-GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA  211 (246)
T ss_dssp             HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHT-T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred             HHHHHHHhcCCCCchhheeecccCCchhhhhcc-CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence                         12467778776      222 233599988433222222      1225679999999995555555


Q ss_pred             E
Q 018606          176 I  176 (353)
Q Consensus       176 i  176 (353)
                      +
T Consensus       212 v  212 (246)
T PF11599_consen  212 V  212 (246)
T ss_dssp             E
T ss_pred             E
Confidence            5

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.29  E-value=0.87  Score=38.73  Aligned_cols=103  Identities=14%  Similarity=0.180  Sum_probs=65.4

Q ss_pred             HHHHHHHhCCCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCC
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDF  138 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~  138 (353)
                      ..+..++.. .+..+.+|+|+|.|+..-  ..-+ ..-+|+++++-++.+++-+        ...|..-|+.+..+.+- 
T Consensus        62 ~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy-  139 (199)
T KOG4058|consen   62 ENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY-  139 (199)
T ss_pred             HHHHHHccC-CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc-
Confidence            344444444 344589999999999743  2223 4779999999999888765        46788888888777554 


Q ss_pred             ccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          139 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       139 fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                       ..++.+++-.-+++      +-..+..-|..|..++-.-|..
T Consensus       140 -~~vviFgaes~m~d------Le~KL~~E~p~nt~vvacRFPL  175 (199)
T KOG4058|consen  140 -RNVVIFGAESVMPD------LEDKLRTELPANTRVVACRFPL  175 (199)
T ss_pred             -ceEEEeehHHHHhh------hHHHHHhhCcCCCeEEEEecCC
Confidence             34444444333443      2334444566777777665543

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=91.84  E-value=0.37  Score=43.31  Aligned_cols=104  Identities=16%  Similarity=0.228  Sum_probs=53.4

Q ss_pred             HHHhCCCCCCEEEEECCcccccc-------cc-CCCcEEEEEeCCHHHHH-HHHH-----cCCeEEEeeCCCCC----C-
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYL-------GL-NPDCFFVGCDISPSLIK-ICVD-----RGHEVLVADAVNLP----Y-  134 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~-------~~-~~~~~v~gvD~S~~~l~-~a~~-----~~i~~~~~D~~~l~----~-  134 (353)
                      .++-.++| ..|+|+|.-.|.-+       .. ...++|+|+|+...... .+.+     .+++++++|..+..    . 
T Consensus        26 eli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~  104 (206)
T PF04989_consen   26 ELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVR  104 (206)
T ss_dssp             HHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSG
T ss_pred             HHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHH
Confidence            34444555 59999999887733       22 47789999999543321 1222     37999999987632    1 


Q ss_pred             ---CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          135 ---RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       135 ---~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                         ......+||.-+  +|....  ..+.|.....++++|+++++.+...+
T Consensus       105 ~~~~~~~~vlVilDs--~H~~~h--vl~eL~~y~plv~~G~Y~IVeDt~~~  151 (206)
T PF04989_consen  105 ELASPPHPVLVILDS--SHTHEH--VLAELEAYAPLVSPGSYLIVEDTIIE  151 (206)
T ss_dssp             SS----SSEEEEESS------SS--HHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred             HhhccCCceEEEECC--CccHHH--HHHHHHHhCccCCCCCEEEEEecccc
Confidence               112223444432  333322  56778889999999999998875543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.70  E-value=1.5  Score=42.69  Aligned_cols=95  Identities=19%  Similarity=0.268  Sum_probs=65.4

Q ss_pred             CCCCEEEEECCcc-ccccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCC------CCCCC-CCccEEEech
Q 018606           80 PSGSLVLDAGCGN-GKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVN------LPYRS-DFGDAAISIA  146 (353)
Q Consensus        80 ~~~~~VLDvGCG~-G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~------l~~~~-~~fD~Vi~~~  146 (353)
                      .++.+|+=+|||+ |.++.    ......|+++|+++.-++.|++. +.+.+......      +.... ..+|+++-..
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~  246 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV  246 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence            4455999999998 54432    24446999999999999999984 44444332221      01112 3689988765


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .     .    ..++..+.++++|||.+.+.-.....
T Consensus       247 G-----~----~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         247 G-----S----PPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             C-----C----HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            5     2    34788999999999999988665443

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=91.32  E-value=1.1  Score=43.67  Aligned_cols=106  Identities=17%  Similarity=0.206  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEECCcccccc----cc--CC--CcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---------
Q 018606           78 SLPSGSLVLDAGCGNGKYL----GL--NP--DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---------  133 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~----~~--~~--~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~---------  133 (353)
                      .+.||.+|||+++.+|.=+    ..  ..  ...|++-|.+..-+......       ++.+...|+...|         
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence            6789999999999999732    21  11  35899999988755444332       2333334443333         


Q ss_pred             CCCCCccEEEec------hhhhhcCCh--------------hHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          134 YRSDFGDAAISI------AVLHHLSTE--------------SRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       134 ~~~~~fD~Vi~~------~vl~h~~~~--------------e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .....||-|++-      +++.+..+.              .....+|.+-.++||+||+++-++-+...
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp  301 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP  301 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence            223468888871      122222211              11357889999999999999999876554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.22  E-value=0.72  Score=45.95  Aligned_cols=98  Identities=17%  Similarity=0.192  Sum_probs=65.5

Q ss_pred             cChHHHHHHHhCCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEE
Q 018606           67 AKWPKVATFLNSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        67 ~~~~~~~~~l~~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      ..|..+.+......+|.+|+=+|||+ |..+.   ...|+.|+++|+++.-+..|+..+......  ... .  ..+|+|
T Consensus       187 s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~--~e~-v--~~aDVV  261 (413)
T cd00401         187 SLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTM--EEA-V--KEGDIF  261 (413)
T ss_pred             hhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccH--HHH-H--cCCCEE
Confidence            44555555555556899999999997 44332   255679999999998888888877654422  111 1  246999


Q ss_pred             EechhhhhcCChhHHHHHHHH-HHhccccCcEEEEEE
Q 018606          143 ISIAVLHHLSTESRRKKAIEE-LVRVVKKGSLVLITV  178 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~e-l~rvLkpgG~lli~~  178 (353)
                      +....     .    ..++.. ..+.+|+||+++..-
T Consensus       262 I~atG-----~----~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         262 VTTTG-----N----KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             EECCC-----C----HHHHHHHHHhcCCCCcEEEEeC
Confidence            87532     2    234444 588999999987664

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=90.95  E-value=0.8  Score=43.25  Aligned_cols=100  Identities=17%  Similarity=0.150  Sum_probs=70.4

Q ss_pred             CCCCCEEEEECCcccccccc---CCC-cEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCC--CCCCCccE
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP--YRSDFGDA  141 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~-~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~--~~~~~fD~  141 (353)
                      ++....+|=||-|.|.+++.   .+. ..++-+|+....++..++.           .+.+..+|...+-  ...+.||+
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV  198 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV  198 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence            45567999999999999863   232 3788889999888887764           4677888766532  44689999


Q ss_pred             EEechhhhhcCChhH-HHHHHHHHHhccccCcEEEEEE
Q 018606          142 AISIAVLHHLSTESR-RKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       142 Vi~~~vl~h~~~~e~-~~~~l~el~rvLkpgG~lli~~  178 (353)
                      |+.-..---.+.... .+..+.-+.+.||+||++++..
T Consensus       199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            988432111111110 3467888999999999998875

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=90.65  E-value=0.26  Score=46.22  Aligned_cols=95  Identities=16%  Similarity=0.151  Sum_probs=55.8

Q ss_pred             CCCCEEEEECCccccc---cccCCCcEEEEEeCCHHHHHHHHHc----------------C-CeEEEe---eCCCCCCCC
Q 018606           80 PSGSLVLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKICVDR----------------G-HEVLVA---DAVNLPYRS  136 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~---~~~~~~~~v~gvD~S~~~l~~a~~~----------------~-i~~~~~---D~~~l~~~~  136 (353)
                      -.+.+|||+|||.|.-   +.......+...|.+...++.-.--                . ..+...   |...+--..
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~  194 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER  194 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence            3578999999999873   2222336777788877766321110                0 111111   111111011


Q ss_pred             CCccEEEechhhhhcCChhHHHHH-HHHHHhccccCcEEEEE
Q 018606          137 DFGDAAISIAVLHHLSTESRRKKA-IEELVRVVKKGSLVLIT  177 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h~~~~e~~~~~-l~el~rvLkpgG~lli~  177 (353)
                      ..||+|.++-++.-....   ... +.....+++++|++++.
T Consensus       195 ~~ydlIlsSetiy~~~~~---~~~~~~~r~~l~~~D~~~~~a  233 (282)
T KOG2920|consen  195 THYDLILSSETIYSIDSL---AVLYLLHRPCLLKTDGVFYVA  233 (282)
T ss_pred             cchhhhhhhhhhhCcchh---hhhHhhhhhhcCCccchhhhh
Confidence            278999999988877763   233 56667778888887665

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=90.56  E-value=1.1  Score=41.54  Aligned_cols=99  Identities=18%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             CCCEEEEECCccccc---cccCCCcEEEEEeCCHHHHHHHHH--c--------CCeEEEe--eCCC---CCCCCCC-ccE
Q 018606           81 SGSLVLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKICVD--R--------GHEVLVA--DAVN---LPYRSDF-GDA  141 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~---~~~~~~~~v~gvD~S~~~l~~a~~--~--------~i~~~~~--D~~~---l~~~~~~-fD~  141 (353)
                      ....||++|+|+|.-   +....+..|.-.|....+......  .        +..+.+.  +-..   ..+.... ||+
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            345799999999952   223567788888886654332221  1        2122222  2222   1122233 899


Q ss_pred             EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      |++..++.+-..   ...++.-+...|..+|.+++...-.+
T Consensus       166 ilasDvvy~~~~---~e~Lv~tla~ll~~~~~i~l~~~lr~  203 (248)
T KOG2793|consen  166 ILASDVVYEEES---FEGLVKTLAFLLAKDGTIFLAYPLRR  203 (248)
T ss_pred             EEEeeeeecCCc---chhHHHHHHHHHhcCCeEEEEEeccc
Confidence            999999988877   55677777888888886666654433

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=90.45  E-value=0.54  Score=48.03  Aligned_cols=92  Identities=22%  Similarity=0.207  Sum_probs=66.2

Q ss_pred             CCCEEEEECCccc-cccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-----------------------CC
Q 018606           81 SGSLVLDAGCGNG-KYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-----------------------LP  133 (353)
Q Consensus        81 ~~~~VLDvGCG~G-~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-----------------------l~  133 (353)
                      ++.++|=+|||.= ..+.   ...|+.|+++|.++.-++.+++.+.+++..|..+                       ++
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~  242 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA  242 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence            5689999999974 3322   2456789999999999999998887776665421                       11


Q ss_pred             CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606          134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       134 ~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      -.-..+|+||....+..-+.   +.-+.+++.+.+|||+.++
T Consensus       243 e~~~~~DIVI~TalipG~~a---P~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       243 AQAKEVDIIITTALIPGKPA---PKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             HHhCCCCEEEECcccCCCCC---CeeehHHHHhhCCCCCEEE
Confidence            01246899988876655444   3457888999999998855

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.09  E-value=0.23  Score=45.11  Aligned_cols=96  Identities=18%  Similarity=0.221  Sum_probs=65.4

Q ss_pred             CEEEEECCcccccccc---------C-CCc---EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccE
Q 018606           83 SLVLDAGCGNGKYLGL---------N-PDC---FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDA  141 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~~---------~-~~~---~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~  141 (353)
                      .+++|+++.+|.+.+.         . .+.   .++++|+-+ |   |--.++.-+++|+++..        |.....|+
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M---aPI~GV~qlq~DIT~~stae~Ii~hfggekAdl  118 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M---APIEGVIQLQGDITSASTAEAIIEHFGGEKADL  118 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C---CccCceEEeecccCCHhHHHHHHHHhCCCCccE
Confidence            6899999999996421         1 111   499999854 2   11127778899998742        55568899


Q ss_pred             EEech-----hhhhcCC---hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          142 AISIA-----VLHHLST---ESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       142 Vi~~~-----vl~h~~~---~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      |+|-+     .||-+..   .+.+..+|.-...+|||||.|+--.|-..
T Consensus       119 VvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~  167 (294)
T KOG1099|consen  119 VVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR  167 (294)
T ss_pred             EEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence            99955     3443322   22356778888899999999987776543

>cd08230 glucose_DH Glucose dehydrogenase

Probab=89.90  E-value=1.5  Score=42.26  Aligned_cols=91  Identities=12%  Similarity=-0.006  Sum_probs=60.7

Q ss_pred             CCCCCEEEEECCcc-ccccc---cCCCcEEEEEeC---CHHHHHHHHHcCCeEEEeeCCCCCC----CCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDI---SPSLIKICVDRGHEVLVADAVNLPY----RSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~---S~~~l~~a~~~~i~~~~~D~~~l~~----~~~~fD~Vi~~~v  147 (353)
                      ..++.+||=+|+|. |.++.   ...++.|++++.   ++.-++.+++.+.+++  +.....+    ....+|+|+....
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g  247 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG  247 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC
Confidence            35788999999875 43332   245678999987   6788888888877653  2221110    1245788887542


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                           .    ...+.+..++|++||++++.-..
T Consensus       248 -----~----~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         248 -----V----PPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             -----C----HHHHHHHHHHccCCcEEEEEecC
Confidence                 2    23678888999999998876543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=89.00  E-value=2.3  Score=40.75  Aligned_cols=91  Identities=16%  Similarity=0.154  Sum_probs=61.5

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~  152 (353)
                      ..+.+|.+||=.|+|. |.++.   ...++.|++++.++.-++.+++.+.+.+.. ....  ..+.+|+++.....    
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~-~~~~--~~~~~d~~i~~~~~----  233 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGG-AYDT--PPEPLDAAILFAPA----  233 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceecc-cccc--CcccceEEEECCCc----
Confidence            3567899999999864 32221   245778999999999999999987654321 1111  12357876543321    


Q ss_pred             ChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          153 TESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                           ...+....+.|++||++++.-.
T Consensus       234 -----~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       234 -----GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             -----HHHHHHHHHhhCCCcEEEEEec
Confidence                 1357788899999999987754

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=88.66  E-value=0.63  Score=46.52  Aligned_cols=100  Identities=22%  Similarity=0.188  Sum_probs=65.5

Q ss_pred             CCEEEEECCccccccc----c--CCCcEEEEEeCCHHHHHHHHHc--C-----CeEEEe-eCC--CCCCCC-CCccEEEe
Q 018606           82 GSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR--G-----HEVLVA-DAV--NLPYRS-DFGDAAIS  144 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~----~--~~~~~v~gvD~S~~~l~~a~~~--~-----i~~~~~-D~~--~l~~~~-~~fD~Vi~  144 (353)
                      ...++|+|.|.|.-..    .  ...-.++.||.|..|+......  +     -.++.. -+.  .+|... ..||+||+
T Consensus       201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~  280 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC  280 (491)
T ss_pred             hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence            3578899988776422    1  2234889999999999887654  1     111111 111  245333 45999999


Q ss_pred             chhhhhcCChhHHHHHHHHHHhcc-ccCcEEEEEEcCCC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVV-KKGSLVLITVWAVE  182 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvL-kpgG~lli~~~~~~  182 (353)
                      .+.++++.+.+.+.....++.+.. ++||.+++. +...
T Consensus       281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI-e~g~  318 (491)
T KOG2539|consen  281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII-EKGT  318 (491)
T ss_pred             eeeeeccCCchhhhhhhHHHHHhccCCCceEEEE-ecCC
Confidence            999999998877777777777765 566665555 4433

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=88.35  E-value=0.4  Score=43.95  Aligned_cols=73  Identities=23%  Similarity=0.271  Sum_probs=41.3

Q ss_pred             CCCCC--CEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc----------------CCeEEEeeCCC-CCCCC
Q 018606           78 SLPSG--SLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----------------GHEVLVADAVN-LPYRS  136 (353)
Q Consensus        78 ~l~~~--~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~-l~~~~  136 (353)
                      .+.++  .+|||.=+|-|.-+.  ...|++|++++.|+-+....+.-                +++++.+|... +..++
T Consensus        70 Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~  149 (234)
T PF04445_consen   70 GLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPD  149 (234)
T ss_dssp             T-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHS
T ss_pred             CCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcC
Confidence            44555  499999999998432  23478999999999765443321                57899999877 55667


Q ss_pred             CCccEEEechhhhh
Q 018606          137 DFGDAAISIAVLHH  150 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h  150 (353)
                      .+||+|..--.+.+
T Consensus       150 ~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  150 NSFDVVYFDPMFPE  163 (234)
T ss_dssp             S--SEEEE--S---
T ss_pred             CCCCEEEECCCCCC
Confidence            89999999777665

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=88.28  E-value=0.62  Score=38.47  Aligned_cols=104  Identities=19%  Similarity=0.221  Sum_probs=55.4

Q ss_pred             hHHHHHHHhCCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-CCCccEEEe
Q 018606           69 WPKVATFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAIS  144 (353)
Q Consensus        69 ~~~~~~~l~~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~-~~~fD~Vi~  144 (353)
                      |..+..++.......+|+|||-|.=.-..   ...|+.|+++|+.+.   .+. .++.++.-|+.+-.+. -...|+|.+
T Consensus         1 ~~~~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~-~g~~~v~DDif~P~l~iY~~a~lIYS   76 (127)
T PF03686_consen    1 MVDFAEYIARLNNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP-EGVNFVVDDIFNPNLEIYEGADLIYS   76 (127)
T ss_dssp             HHHHHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEE
T ss_pred             CchHHHHHHHhCCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc-cCcceeeecccCCCHHHhcCCcEEEE
Confidence            34556666644555699999887633221   245689999999987   333 5899999999873311 134688888


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      +-     +++| +...+.++.+.  -|.-++|.....+..
T Consensus        77 iR-----PP~E-l~~~il~lA~~--v~adlii~pL~~e~~  108 (127)
T PF03686_consen   77 IR-----PPPE-LQPPILELAKK--VGADLIIRPLGGESP  108 (127)
T ss_dssp             ES-------TT-SHHHHHHHHHH--HT-EEEEE-BTTB--
T ss_pred             eC-----CChH-HhHHHHHHHHH--hCCCEEEECCCCCCC
Confidence            64     2223 45566666664  467788888887764

; PDB: 2K4M_A.

>PRK10742 putative methyltransferase; Provisional

Probab=88.14  E-value=1.3  Score=40.95  Aligned_cols=73  Identities=14%  Similarity=0.108  Sum_probs=50.1

Q ss_pred             CCCCCC--EEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc----------------CCeEEEeeCCCC-CCCC
Q 018606           78 SLPSGS--LVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----------------GHEVLVADAVNL-PYRS  136 (353)
Q Consensus        78 ~l~~~~--~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~l-~~~~  136 (353)
                      .+++|.  +|||+=+|.|....  ...|+.|+++|.++.+....++.                +++++.+|.... .-..
T Consensus        83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~  162 (250)
T PRK10742         83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT  162 (250)
T ss_pred             CCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence            456766  99999999999643  35688999999999876554432                245566665542 2122


Q ss_pred             CCccEEEechhhhh
Q 018606          137 DFGDAAISIAVLHH  150 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h  150 (353)
                      ..||+|+.--.+.|
T Consensus       163 ~~fDVVYlDPMfp~  176 (250)
T PRK10742        163 PRPQVVYLDPMFPH  176 (250)
T ss_pred             CCCcEEEECCCCCC
Confidence            37899998666555

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=88.00  E-value=0.86  Score=43.59  Aligned_cols=74  Identities=20%  Similarity=0.248  Sum_probs=46.0

Q ss_pred             HHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC-----C
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----Y  134 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~-----~  134 (353)
                      ..+...|. ..++..++|.=-|.|.++.    ..+++.++|+|..+.+++.|+++      ++.++.+++.++.     .
T Consensus        10 ~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~   88 (310)
T PF01795_consen   10 KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL   88 (310)
T ss_dssp             HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT
T ss_pred             HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc
Confidence            45555664 5667799999889888653    35669999999999999999876      4566666665542     2


Q ss_pred             -CCCCccEEEe
Q 018606          135 -RSDFGDAAIS  144 (353)
Q Consensus       135 -~~~~fD~Vi~  144 (353)
                       .-..+|.|+.
T Consensus        89 ~~~~~~dgiL~   99 (310)
T PF01795_consen   89 NGINKVDGILF   99 (310)
T ss_dssp             TTTS-EEEEEE
T ss_pred             cCCCccCEEEE
Confidence             2345666665

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=87.21  E-value=3.3  Score=37.35  Aligned_cols=93  Identities=16%  Similarity=0.224  Sum_probs=60.6

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-------~~~~~fD~Vi~~~  146 (353)
                      .+.++.+||-.|+|. |..+.   ...+..|++++.++...+.+++.+..... +.....       ...+.+|+++...
T Consensus       131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~d~vi~~~  209 (271)
T cd05188         131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVI-DYKEEDLEEELRLTGGGGADVVIDAV  209 (271)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceec-cCCcCCHHHHHHHhcCCCCCEEEECC
Confidence            347789999999986 44332   24568999999999888888766533221 111111       1235689988653


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .     .    ...+..+.+.|+++|.++.....
T Consensus       210 ~-----~----~~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         210 G-----G----PETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             C-----C----HHHHHHHHHhcccCCEEEEEccC
Confidence            2     1    13566778889999998876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK13699 putative methylase; Provisional

Probab=87.07  E-value=0.77  Score=41.92  Aligned_cols=55  Identities=16%  Similarity=0.344  Sum_probs=35.5

Q ss_pred             eEEEeeCCCC--CCCCCCccEEEech--hh--hh-----c---CChhHHHHHHHHHHhccccCcEEEEE
Q 018606          123 EVLVADAVNL--PYRSDFGDAAISIA--VL--HH-----L---STESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       123 ~~~~~D~~~l--~~~~~~fD~Vi~~~--vl--~h-----~---~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      +++.+|+.++  .++++++|+|+..-  .+  ..     +   ...+-...++.++.|+|||||.+++.
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if   71 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF   71 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            4667777664  46788888888841  11  00     0   00121357899999999999988763

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=86.49  E-value=9.4  Score=37.56  Aligned_cols=95  Identities=22%  Similarity=0.222  Sum_probs=55.2

Q ss_pred             CCCEEEEECCccccc----cc---c----CCCcEEEEEeC----CHHHHHHHHH--------cCCeEEEe-----eCCC-
Q 018606           81 SGSLVLDAGCGNGKY----LG---L----NPDCFFVGCDI----SPSLIKICVD--------RGHEVLVA-----DAVN-  131 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~----~~---~----~~~~~v~gvD~----S~~~l~~a~~--------~~i~~~~~-----D~~~-  131 (353)
                      ..-.|+|+|.|.|.-    +.   .    .|..+|||++.    +..-++.+.+        .|+.|.-.     +... 
T Consensus       110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l  189 (374)
T PF03514_consen  110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL  189 (374)
T ss_pred             cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence            446999999999972    11   1    35569999999    6655544444        36644222     2222 


Q ss_pred             ----CCCCCCCccEEEechhhhhcCChh----HHHHHHHHHHhccccCcEEE
Q 018606          132 ----LPYRSDFGDAAISIAVLHHLSTES----RRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       132 ----l~~~~~~fD~Vi~~~vl~h~~~~e----~~~~~l~el~rvLkpgG~ll  175 (353)
                          +...++..=+|-+...|||+.+..    .+...+-...|.|+|.-.++
T Consensus       190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~  241 (374)
T PF03514_consen  190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVL  241 (374)
T ss_pred             CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEE
Confidence                223344444555667789987321    12334455667889984433

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=86.28  E-value=2.4  Score=40.79  Aligned_cols=91  Identities=13%  Similarity=0.120  Sum_probs=58.3

Q ss_pred             CCCCCEEEEECCcc-cccc----cc-CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606           79 LPSGSLVLDAGCGN-GKYL----GL-NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        79 l~~~~~VLDvGCG~-G~~~----~~-~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~  152 (353)
                      +.+|.+||=+|||. |.++    .. ..+..|+++|.++.-++.+++.+......   .+. ....+|+|+-...  .-.
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~---~~~-~~~g~d~viD~~G--~~~  234 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLID---DIP-EDLAVDHAFECVG--GRG  234 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehh---hhh-hccCCcEEEECCC--CCc
Confidence            46789999999975 4332    12 23468999999998888887643322111   111 1124788886432  100


Q ss_pred             ChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          153 TESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .    ...+....++|++||++++.-.
T Consensus       235 ~----~~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         235 S----QSAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             c----HHHHHHHHHhCcCCcEEEEEee
Confidence            1    3468888899999999987754

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=85.76  E-value=2.9  Score=38.33  Aligned_cols=84  Identities=19%  Similarity=0.223  Sum_probs=54.4

Q ss_pred             cChHHHHHHHhC----C-CCCCEEEEECCccccc---cc-cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEe-
Q 018606           67 AKWPKVATFLNS----L-PSGSLVLDAGCGNGKY---LG-LNPDCFFVGCDISPSLIKICVDR---------GHEVLVA-  127 (353)
Q Consensus        67 ~~~~~~~~~l~~----l-~~~~~VLDvGCG~G~~---~~-~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~-  127 (353)
                      .+...+.++|..    + .++.++||||.|.--.   +. ...+.+.+|.|+++..++.|+..         .+++... 
T Consensus        59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk  138 (292)
T COG3129          59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK  138 (292)
T ss_pred             HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence            334556666652    2 2556899999886432   22 36678999999999999998865         2444332 


Q ss_pred             eCCC----CCCCCCCccEEEechhhhh
Q 018606          128 DAVN----LPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus       128 D~~~----l~~~~~~fD~Vi~~~vl~h  150 (353)
                      |-..    +--..+.||+++|+--+|-
T Consensus       139 ~~~~if~giig~nE~yd~tlCNPPFh~  165 (292)
T COG3129         139 DSDAIFNGIIGKNERYDATLCNPPFHD  165 (292)
T ss_pred             CccccccccccccceeeeEecCCCcch
Confidence            2111    1123678999999887764

>PRK11524 putative methyltransferase; Provisional

Probab=85.64  E-value=0.65  Score=43.83  Aligned_cols=57  Identities=21%  Similarity=0.193  Sum_probs=36.8

Q ss_pred             CeEEEeeCCCC--CCCCCCccEEEech--hh--h--hc----CCh---hHHHHHHHHHHhccccCcEEEEEE
Q 018606          122 HEVLVADAVNL--PYRSDFGDAAISIA--VL--H--HL----STE---SRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       122 i~~~~~D~~~l--~~~~~~fD~Vi~~~--vl--~--h~----~~~---e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ..++++|+...  .+++++||+|++.-  .+  .  ..    ...   +-....+.++.|+|||||.+++..
T Consensus         9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            45677777763  35677889888832  11  0  00    000   113578999999999999998863

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=85.55  E-value=4.2  Score=39.23  Aligned_cols=93  Identities=14%  Similarity=0.119  Sum_probs=60.5

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi  143 (353)
                      ..+.++.+||=.|||. |.++.   ...+. .|+++|.++.-++.+++.+.+.+. +.....        .....+|+|+
T Consensus       172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~i~~~~~~~g~d~vi  250 (358)
T TIGR03451       172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTV-NSSGTDPVEAIRALTGGFGADVVI  250 (358)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEE-cCCCcCHHHHHHHHhCCCCCCEEE
Confidence            3567889999999864 33321   24566 599999999999999887764322 111110        1123578887


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ....     .    ...+....+.|++||++++.-.
T Consensus       251 d~~g-----~----~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       251 DAVG-----R----PETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             ECCC-----C----HHHHHHHHHHhccCCEEEEECC
Confidence            6432     2    2356677889999999987754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=85.31  E-value=1.8  Score=42.14  Aligned_cols=91  Identities=24%  Similarity=0.222  Sum_probs=64.4

Q ss_pred             CCEEEEECCcccc----ccccCCCcEEEEEeCCHHHHHHHHHc---C----CeEEEeeCCCCCCC-CCCccEEEechhhh
Q 018606           82 GSLVLDAGCGNGK----YLGLNPDCFFVGCDISPSLIKICVDR---G----HEVLVADAVNLPYR-SDFGDAAISIAVLH  149 (353)
Q Consensus        82 ~~~VLDvGCG~G~----~~~~~~~~~v~gvD~S~~~l~~a~~~---~----i~~~~~D~~~l~~~-~~~fD~Vi~~~vl~  149 (353)
                      ..+|||.=+|+|.    ++...+...++.-|+|+...+.++++   |    ..++..|+..+-.. ...||+|=.    .
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D  128 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D  128 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence            5689999999997    33334444999999999999999887   2    34455565543321 256777632    1


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      =+.+   +..++....+.++.||.+.++.-
T Consensus       129 PFGS---PaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         129 PFGS---PAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             CCCC---CchHHHHHHHHhhcCCEEEEEec
Confidence            1233   56788999999999999999853

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=85.31  E-value=1.2  Score=43.78  Aligned_cols=91  Identities=25%  Similarity=0.223  Sum_probs=62.3

Q ss_pred             CCCEEEEECCcccc----ccccCCC-cEEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCC-CCCCCccEEEec
Q 018606           81 SGSLVLDAGCGNGK----YLGLNPD-CFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP-YRSDFGDAAISI  145 (353)
Q Consensus        81 ~~~~VLDvGCG~G~----~~~~~~~-~~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~l~-~~~~~fD~Vi~~  145 (353)
                      .+-+|||.=+|+|.    |+...++ ..|+.-|+|+.+++..+++    +     +++...|+..+- .....||+|=.-
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD  128 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD  128 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence            34689999999997    3333233 5999999999999998887    1     456667776542 356789998542


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      -    +.+   +..+|....+.++.||.|.++.
T Consensus       129 P----fGS---p~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  129 P----FGS---PAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             -----SS-----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             C----CCC---ccHhHHHHHHHhhcCCEEEEec
Confidence            1    233   5789999999999999999995

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=85.11  E-value=1.3  Score=43.67  Aligned_cols=61  Identities=16%  Similarity=0.124  Sum_probs=51.4

Q ss_pred             CCeEEEeeCCCCC--CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          121 GHEVLVADAVNLP--YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       121 ~i~~~~~D~~~l~--~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +++++.+++.+..  .+++++|.++....+.++++.. ..+.++++.+.++|||++++-.....
T Consensus       276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~-~~~~~~~l~~~~~pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQ-LNEEWQELARTARPGARVLWRSAAVP  338 (380)
T ss_pred             eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHH-HHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence            5778888877642  5689999999999999998755 78999999999999999998876644

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=84.95  E-value=5  Score=37.87  Aligned_cols=94  Identities=17%  Similarity=0.132  Sum_probs=61.6

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCCccEEEec
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISI  145 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~------~~~~~fD~Vi~~  145 (353)
                      ..+.++.+||-+|+|. |..+.   ...+.. +++++.++...+.+++.++..+.. .....      .....+|+++..
T Consensus       155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~vd~v~~~  233 (334)
T cd08234         155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVD-PSREDPEAQKEDNPYGFDVVIEA  233 (334)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEec-CCCCCHHHHHHhcCCCCcEEEEC
Confidence            4567888999998653 33322   245665 899999999999887777653222 11111      123568999864


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ..     .    ...+.++.+.|+++|+++...+.
T Consensus       234 ~~-----~----~~~~~~~~~~l~~~G~~v~~g~~  259 (334)
T cd08234         234 TG-----V----PKTLEQAIEYARRGGTVLVFGVY  259 (334)
T ss_pred             CC-----C----hHHHHHHHHHHhcCCEEEEEecC
Confidence            21     1    24677888999999998876543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=84.88  E-value=1.1  Score=39.73  Aligned_cols=41  Identities=22%  Similarity=0.311  Sum_probs=31.4

Q ss_pred             CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHH
Q 018606           79 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD  119 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~  119 (353)
                      -.+|..|||.=||+|..+.  ...+-+.+|+|+++..++.|++
T Consensus       189 t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  189 TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            4689999999999999653  3666789999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=84.76  E-value=4  Score=39.67  Aligned_cols=93  Identities=17%  Similarity=0.197  Sum_probs=59.8

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEe-eCCCC-----CCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVA-DAVNL-----PYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l-----~~~~~~fD~Vi~~~  146 (353)
                      .+.++.+||=.|+|. |.++.   ...++ .|+++|.++.-++.+++.+.+.... .-..+     ....+.+|+|+...
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~  267 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA  267 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence            467888888899864 33321   24566 6999999999999998877643321 11110     01123578887642


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .     .    ...+....+.|+++|++++.-.
T Consensus       268 G-----~----~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         268 G-----S----VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             C-----C----hHHHHHHHHHHhcCCEEEEEcc
Confidence            1     1    2456777889999999887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=84.59  E-value=6.2  Score=37.23  Aligned_cols=93  Identities=15%  Similarity=0.102  Sum_probs=60.4

Q ss_pred             CCCCCCEEEEECCc-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCC-CCC-CCCCCccEEEechhhhhc
Q 018606           78 SLPSGSLVLDAGCG-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NLP-YRSDFGDAAISIAVLHHL  151 (353)
Q Consensus        78 ~l~~~~~VLDvGCG-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~-~l~-~~~~~fD~Vi~~~vl~h~  151 (353)
                      .+.++.+||-+||| .|..+.   ...+..+++++.+...++.+++.+.+.+..+.. ... -..+.+|+++...     
T Consensus       159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~-----  233 (330)
T cd08245         159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV-----  233 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC-----
Confidence            56778889999987 454432   255779999999999998887665433322111 110 0123588887642     


Q ss_pred             CChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          152 STESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       152 ~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..    ...+..+.+.|+++|.++....
T Consensus       234 ~~----~~~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         234 VS----GAAAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             Cc----HHHHHHHHHhcccCCEEEEECC
Confidence            11    2457778899999999887753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=84.42  E-value=8  Score=34.49  Aligned_cols=108  Identities=13%  Similarity=0.196  Sum_probs=71.9

Q ss_pred             HHHHHhCCCCCCEEEEECCccccccc--------cCCCcEEEEEeCCHHHHHHHHH--cCCeEEEeeCCCCC-------C
Q 018606           72 VATFLNSLPSGSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVD--RGHEVLVADAVNLP-------Y  134 (353)
Q Consensus        72 ~~~~l~~l~~~~~VLDvGCG~G~~~~--------~~~~~~v~gvD~S~~~l~~a~~--~~i~~~~~D~~~l~-------~  134 (353)
                      ...++-.++| +.|+++|.-.|.-+.        .....+|+++|++-.-++-+..  .++.|+.++-....       .
T Consensus        61 yQellw~~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~  139 (237)
T COG3510          61 YQELLWELQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRL  139 (237)
T ss_pred             HHHHHHhcCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHH
Confidence            3444545555 589999998887432        1234799999998776544333  38999999877632       2


Q ss_pred             CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          135 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       135 ~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ..+.--+.++..+-||...   ..+.|+-+.++|..|-++++.+-..+.
T Consensus       140 ~~~y~kIfvilDsdHs~~h---vLAel~~~~pllsaG~Y~vVeDs~v~d  185 (237)
T COG3510         140 KNEYPKIFVILDSDHSMEH---VLAELKLLAPLLSAGDYLVVEDSNVND  185 (237)
T ss_pred             hcCCCcEEEEecCCchHHH---HHHHHHHhhhHhhcCceEEEecccccC
Confidence            2233345555556666654   567788888999999998888766554

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=84.39  E-value=1.4  Score=42.99  Aligned_cols=40  Identities=20%  Similarity=0.193  Sum_probs=32.5

Q ss_pred             CCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHH
Q 018606           80 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVD  119 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~  119 (353)
                      .+-..|+|+|.|.|.+.+   ...+..|.|||-|....+.|++
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            445799999999999754   5778899999999887766654

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=84.39  E-value=5.5  Score=37.80  Aligned_cols=89  Identities=19%  Similarity=0.224  Sum_probs=58.1

Q ss_pred             CCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCC-----CCCCCCCCccEEEechhhhh
Q 018606           81 SGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV-----NLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        81 ~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~-----~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      ++.+||-.|||. |..+.   ...+. .+++++.++...+.+++.+.+.+. |..     .+......+|+++.....  
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~~vd~vld~~g~--  241 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETV-NLARDPLAAYAADKGDFDVVFEASGA--  241 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEE-cCCchhhhhhhccCCCccEEEECCCC--
Confidence            788888888874 44432   24566 799999999998888776653221 111     111122348998875321  


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                             ...+..+.+.|+++|+++....
T Consensus       242 -------~~~~~~~~~~L~~~G~~v~~g~  263 (339)
T cd08232         242 -------PAALASALRVVRPGGTVVQVGM  263 (339)
T ss_pred             -------HHHHHHHHHHHhcCCEEEEEec
Confidence                   2357788899999999887643

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=84.37  E-value=3  Score=38.79  Aligned_cols=90  Identities=19%  Similarity=0.200  Sum_probs=58.6

Q ss_pred             CCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCCccEEEechhh
Q 018606           80 PSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIAVL  148 (353)
Q Consensus        80 ~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~------~~~~~fD~Vi~~~vl  148 (353)
                      .++.+||=+|+|+ |.++.   ...+.. |+++|.++.-++.+++.+.+.... .....      .....+|+|+.... 
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d~vid~~G-  196 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAE-PEVLAERQGGLQNGRGVDVALEFSG-  196 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCCEEEECCC-
Confidence            4788999998864 33321   245664 999999999999999887643321 11100      11235788876421 


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                          .    ...+..+.+.|+++|++++.-.
T Consensus       197 ----~----~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       197 ----A----TAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             ----C----hHHHHHHHHHhcCCCEEEEecc
Confidence                2    3467788899999999987753

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=83.70  E-value=3.3  Score=33.38  Aligned_cols=73  Identities=11%  Similarity=0.147  Sum_probs=53.0

Q ss_pred             CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-------C-CCCCCccEEEechhhhhcCChhHHHHHHHHHHhcccc
Q 018606           99 NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-------P-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK  170 (353)
Q Consensus        99 ~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-------~-~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkp  170 (353)
                      ..|.+|+++|.++.-++.+++.+.+.+. |..+.       . .....+|+|+-...     .    ...+.....+|++
T Consensus        12 ~~G~~vi~~~~~~~k~~~~~~~Ga~~~~-~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~----~~~~~~~~~~l~~   81 (130)
T PF00107_consen   12 AMGAKVIATDRSEEKLELAKELGADHVI-DYSDDDFVEQIRELTGGRGVDVVIDCVG-----S----GDTLQEAIKLLRP   81 (130)
T ss_dssp             HTTSEEEEEESSHHHHHHHHHTTESEEE-ETTTSSHHHHHHHHTTTSSEEEEEESSS-----S----HHHHHHHHHHEEE
T ss_pred             HcCCEEEEEECCHHHHHHHHhhcccccc-cccccccccccccccccccceEEEEecC-----c----HHHHHHHHHHhcc
Confidence            3448999999999999999998754443 22221       1 22347899987643     2    4578889999999


Q ss_pred             CcEEEEEEcCC
Q 018606          171 GSLVLITVWAV  181 (353)
Q Consensus       171 gG~lli~~~~~  181 (353)
                      +|++++.-...
T Consensus        82 ~G~~v~vg~~~   92 (130)
T PF00107_consen   82 GGRIVVVGVYG   92 (130)
T ss_dssp             EEEEEEESSTS
T ss_pred             CCEEEEEEccC
Confidence            99999987654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=83.60  E-value=4.4  Score=37.18  Aligned_cols=92  Identities=16%  Similarity=0.157  Sum_probs=57.9

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcC-CeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRG-HEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~-i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      ..+.++.+||=.|||. |..+.   ...+.. |++++.+++.++.+++.+ .+-+. ...........+|+|+....   
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~d~vl~~~~---  168 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVA-ADTADEIGGRGADVVIEASG---  168 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCcccc-ccchhhhcCCCCCEEEEccC---
Confidence            4567888898888865 43332   234566 999999999988888776 11111 01100112345888886421   


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                        .    ...+....+.|+++|+++...
T Consensus       169 --~----~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         169 --S----PSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             --C----hHHHHHHHHHhcCCcEEEEEe
Confidence              1    235677888999999987654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=83.49  E-value=4.9  Score=31.81  Aligned_cols=76  Identities=18%  Similarity=0.172  Sum_probs=54.1

Q ss_pred             CCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606          100 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       100 ~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~----~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      .+..|+.+|.++..++.+++.++.++.+|..+..    ..-...+.+++..     .+.+ ....+....|-+.|...++
T Consensus        20 ~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~d~-~n~~~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   20 GGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT-----DDDE-ENLLIALLARELNPDIRII   93 (116)
T ss_dssp             TTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES-----SSHH-HHHHHHHHHHHHTTTSEEE
T ss_pred             CCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc-----CCHH-HHHHHHHHHHHHCCCCeEE
Confidence            4459999999999999999999999999998742    2234667777643     2333 3455666677778888888


Q ss_pred             EEEcCC
Q 018606          176 ITVWAV  181 (353)
Q Consensus       176 i~~~~~  181 (353)
                      ......
T Consensus        94 ~~~~~~   99 (116)
T PF02254_consen   94 ARVNDP   99 (116)
T ss_dssp             EEESSH
T ss_pred             EEECCH
Confidence            776543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PHA01634 hypothetical protein

Probab=83.43  E-value=5.5  Score=33.13  Aligned_cols=40  Identities=18%  Similarity=0.071  Sum_probs=32.2

Q ss_pred             CCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc
Q 018606           81 SGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~  120 (353)
                      .+.+|+|||.+-|.-+.  ...| -.|+++++++.+.+..++.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een   70 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEV   70 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHH
Confidence            56899999999988543  2344 4999999999999998875

>PRK11524 putative methyltransferase; Provisional

Probab=82.92  E-value=2  Score=40.43  Aligned_cols=42  Identities=26%  Similarity=0.334  Sum_probs=36.5

Q ss_pred             CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606           79 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      -.+|+.|||.=||+|..+.  ...+-+.+|+|+++..++.|+++
T Consensus       206 S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~R  249 (284)
T PRK11524        206 SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRR  249 (284)
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence            3689999999999999653  46677999999999999999988

>PTZ00357 methyltransferase; Provisional

Probab=82.39  E-value=3.1  Score=43.77  Aligned_cols=89  Identities=18%  Similarity=0.256  Sum_probs=61.7

Q ss_pred             EEEEECCccccccc--------cCCCcEEEEEeCCHHHHHHHHHc--------C--------CeEEEeeCCCCCCCC---
Q 018606           84 LVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR--------G--------HEVLVADAVNLPYRS---  136 (353)
Q Consensus        84 ~VLDvGCG~G~~~~--------~~~~~~v~gvD~S~~~l~~a~~~--------~--------i~~~~~D~~~l~~~~---  136 (353)
                      .|+=+|+|-|-+..        ..-.++|++++-++..+.....+        +        ++++..|+..+..+.   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            68999999999752        13457999999995532222111        1        688999999875321   


Q ss_pred             --------CCccEEEechhhhhcCChhHHHHHHHHHHhcccc----CcE
Q 018606          137 --------DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK----GSL  173 (353)
Q Consensus       137 --------~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkp----gG~  173 (353)
                              +.+|+||+- .|.-+.+.|.-.++|.-+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                    368998872 344455656556889999999987    776

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=80.81  E-value=7.4  Score=36.98  Aligned_cols=92  Identities=16%  Similarity=0.151  Sum_probs=59.3

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeeCCC-----C-C-CCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVN-----L-P-YRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~-----l-~-~~~~~fD~Vi~~  145 (353)
                      .+.++.+||=+|+|. |.++.   ...++. |+++|.++.-++.+++.+.+.+.. ...     + . .....+|+|+..
T Consensus       160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~-~~~~~~~~~~~~~~~~~~d~vid~  238 (339)
T cd08239         160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVIN-SGQDDVQEIRELTSGAGADVAIEC  238 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEc-CCcchHHHHHHHhCCCCCCEEEEC
Confidence            456788999898764 22221   245666 999999999999998877643321 111     1 0 112368988864


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..     .    ...+....+.|+++|++++.-.
T Consensus       239 ~g-----~----~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         239 SG-----N----TAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CC-----C----HHHHHHHHHHhhcCCEEEEEcC
Confidence            32     2    2355677889999999987654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=80.32  E-value=10  Score=38.79  Aligned_cols=132  Identities=14%  Similarity=0.181  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhhcccccc------ccccChHHHHHHHhC-----CCCCCEEEEECCcccccccc--------CCCcEEEEE
Q 018606           47 KKYVHRVYDAIAPHFSS------TRFAKWPKVATFLNS-----LPSGSLVLDAGCGNGKYLGL--------NPDCFFVGC  107 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~------~~~~~~~~~~~~l~~-----l~~~~~VLDvGCG~G~~~~~--------~~~~~v~gv  107 (353)
                      .+++-..|+.....+..      ..+...+.+..++..     ..|+..+.|..||+|.++..        .....++|.
T Consensus       172 ~d~lg~~ye~~~~k~a~e~~t~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gq  251 (501)
T TIGR00497       172 IDAFGDAYEFLISMYAQNAGKSGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQ  251 (501)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCcCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEE
Confidence            35677777666554422      123334455554332     22567999999999998641        112479999


Q ss_pred             eCCHHHHHHHHHc----CC-----eEEEeeCCCCC-C-CCCCccEEEechh--------------------hhh----cC
Q 018606          108 DISPSLIKICVDR----GH-----EVLVADAVNLP-Y-RSDFGDAAISIAV--------------------LHH----LS  152 (353)
Q Consensus       108 D~S~~~l~~a~~~----~i-----~~~~~D~~~l~-~-~~~~fD~Vi~~~v--------------------l~h----~~  152 (353)
                      +....|...|+..    ++     ....+|-..-+ + ....||+|++.--                    +.|    ..
T Consensus       252 e~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~  331 (501)
T TIGR00497       252 EINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNS  331 (501)
T ss_pred             eCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCc
Confidence            9999999888864    11     12223322211 1 2345777765321                    112    12


Q ss_pred             ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          153 TESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ..  -..++..+..+|++||+..+....
T Consensus       332 ~~--~~afi~h~~~~L~~gG~~aiI~~~  357 (501)
T TIGR00497       332 KA--DLAFVLHALYVLGQEGTAAIVCFP  357 (501)
T ss_pred             hh--hHHHHHHHHHhcCCCCeEEEEecC
Confidence            22  246788889999999987776543

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PRK13699 putative methylase; Provisional

Probab=80.06  E-value=3.2  Score=37.83  Aligned_cols=50  Identities=16%  Similarity=0.272  Sum_probs=39.0

Q ss_pred             HHHHHHh-CCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606           71 KVATFLN-SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        71 ~~~~~l~-~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      -+..++. .-.+|..|||.=||+|..+.  ...+-..+|+|+++...+.+.++
T Consensus       152 l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r  204 (227)
T PRK13699        152 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQR  204 (227)
T ss_pred             HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHH
Confidence            3444443 34688999999999999653  35677999999999999998877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	353
3ege_A	261	Crystal Structure Of Putative Methyltransferase Fro		2e-07

>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From Antibiotic Biosynthesis Pathway (Yp_324569.1) From Anabaena Variabilis Atcc 29413 At 2.40 A Resolution Length = 261

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 53  VYDAIAPHFSSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNGKY-LGLNPDCFFVGCDI 109
           +Y++I   +S TR      V   +N  +LP GS++ D G G G Y + L     FV   +
Sbjct: 4   IYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYA-V 62
Query: 110 SPSLI---KICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVR 166
            PS++   +  V    E     A NL       D  ISI  +HH    S  +K+ +E  R
Sbjct: 63  EPSIVXRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHF---SHLEKSFQEXQR 119
Query: 167 VVKKGSLVLIT 177
           +++ G++VL+T
Sbjct: 120 IIRDGTIVLLT 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-39
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	5e-21
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	1e-20
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	4e-20
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	1e-18
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-17
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	2e-17
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-17
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	8e-17
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-16
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-16
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-16
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	4e-16
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	6e-16
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	1e-15
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-14
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	1e-13
3f4k_A	257	Putative methyltransferase; structural genomics, P	1e-13
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-13
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	2e-13
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	2e-13
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-13
3i9f_A	170	Putative type 11 methyltransferase; structural gen	6e-13
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-12
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	3e-12
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	3e-12
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	7e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	1e-11
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-11
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	1e-11
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	3e-11
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	3e-11
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	5e-11
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	5e-11
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	7e-11
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	8e-11
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	1e-10
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-10
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	2e-10
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	2e-10
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	5e-10
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	8e-10
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	1e-09
1xxl_A	239	YCGJ protein; structural genomics, protein structu	1e-09
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	2e-09
3cc8_A	230	Putative methyltransferase; structural genomics, j	4e-09
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	1e-08
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	1e-08
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	2e-08
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	6e-08
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	1e-07
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	2e-07
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	2e-07
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	2e-07
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	2e-07
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	3e-07
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	7e-07
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	1e-06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	1e-06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	2e-06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	3e-06
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	3e-06
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	3e-06
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	3e-06
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	9e-06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	1e-05
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	3e-05
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	6e-05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	6e-05
3lcc_A	235	Putative methyl chloride transferase; halide methy	9e-05
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	9e-05
2p7i_A	250	Hypothetical protein; putative methyltransferase,	1e-04
1im8_A	244	YECO; methyltransferase, adenosylhomocysteine, str	2e-04
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	2e-04
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	2e-04
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	2e-04
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	3e-04
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	7e-04

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score =  139 bits (351), Expect = 2e-39
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 11/178 (6%)

Query: 53  VYDAIAPHFSSTRFAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLGL--NPDCFFVGCD 108
           +Y++I   +S TR      V   +N L  P GS++ D G G G Y     N   F    +
Sbjct: 4   IYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVE 63

Query: 109 ISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRV 167
            S  + +  V     E     A NL       D  ISI  +HH S   +   + +E+ R+
Sbjct: 64  PSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEK---SFQEMQRI 120

Query: 168 VKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSA--RTLESIP 223
           ++ G++VL+  + +    +  +  + P   +    ++              R +E+IP
Sbjct: 121 IRDGTIVLL-TFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIP 177

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 89.1 bits (221), Expect = 5e-21
 Identities = 34/184 (18%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 44  ELEKKYVHRVYDAIAP----HFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLN 99
                ++  +++         F   RFA   ++      LP G   ++ G G G++    
Sbjct: 7   HHHHHHMWHIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGR-GVEIGVGTGRFAVPL 65

Query: 100 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 159
                +G + S  + +I   RG  VL   A NLP + +  D A+ +  +  +      ++
Sbjct: 66  KIK--IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFV---DDPER 120

Query: 160 AIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPR-VRSPSART 218
           A++E  R++KKG  +++ +            + + L ++Y +        +  R  S   
Sbjct: 121 ALKEAYRILKKGGYLIVGIVD----------RESFLGREYEKNKEKSVFYKNARFFSTEE 170

Query: 219 LESI 222
           L  +
Sbjct: 171 LMDL 174

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 88.0 bits (218), Expect = 1e-20
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 12/159 (7%)

Query: 61  FSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKIC 117
            +  R  +  +   + N       VLD G G       + +       G +IS   +K  
Sbjct: 3   KTIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKA 62

Query: 118 VDRGHE------VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 171
            +   E      +   D   LP++ +      S   + H+      K+AI+E+ RV+K G
Sbjct: 63  ENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKND-VKEAIDEIKRVLKPG 121

Query: 172 SLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPR 210
            L  I     + E  +   K       +++   G     
Sbjct: 122 GLACINFLTTKDERYNKGEKIGEGE--FLQLERGEKVIH 158

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 86.4 bits (214), Expect = 4e-20
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 53  VYDAIAPHF------SSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVG 106
            + ++A  +          +    +       LP G  +L+ G G G +L   P    VG
Sbjct: 2   PFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPYPQKVG 61

Query: 107 CDISPSLIKICVDRGHEV--LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 164
            + S +++ +   R  E   + A    LP+  +  D  +    L  +      ++ + E 
Sbjct: 62  VEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFV---EDVERVLLEA 118

Query: 165 VRVVKKGSLVLITVWA 180
            RV++ G  +++ V  
Sbjct: 119 RRVLRPGGALVVGVLE 134

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 82.2 bits (203), Expect = 1e-18
 Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 14/140 (10%)

Query: 52  RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYL---GLNPDCFFV 105
           R Y   A  ++  R  +   +  FL  LP+G+ +L+ GCG G   + +   G +      
Sbjct: 15  RFYRGNATAYAE-RQPRSATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDV----D 69

Query: 106 GCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 164
             D SP L      R G  V       L     + DA  + A L H+         ++ +
Sbjct: 70  ATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAY-DAVWAHACLLHVP-RDELADVLKLI 127

Query: 165 VRVVKKGSLVLITVWAVEQE 184
            R +K G L   +  + E E
Sbjct: 128 WRALKPGGLFYASYKSGEGE 147

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 80.7 bits (199), Expect = 1e-17
 Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 21/167 (12%)

Query: 48  KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCF 103
           +YVH  Y        S +     K+       P G+ VL+AGCG G         NPD  
Sbjct: 5   EYVHG-YSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAE 63

Query: 104 FVGCDISPSLIKI----CVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 156
               DISP  ++         G    + L A+  +LP+     D      VL HL     
Sbjct: 64  ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHL---QS 120

Query: 157 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 203
            ++A++ L +V+K G  + +               + P  +K +E W
Sbjct: 121 PEEALKSLKKVLKPGGTITVIEGDHGS------CYFHPEGKKAIEAW 161

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 79.9 bits (197), Expect = 2e-17
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 13/154 (8%)

Query: 35  SSSSIKSTPELEKKYVHRVYDAIAPH----FSSTRFAKWPKV--ATFLNSLPSGSLVLDA 88
            S  I       K      YD IA      + + ++  + ++  +     L +   VLD 
Sbjct: 2   GSDKIHHHHHHMKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDL 61

Query: 89  GCGNGKY-LGLNPDCFFV-GCDISPSLIKICVDRG-HEVLVADAVNLPYRSDFGDAAISI 145
           G G GK+ L L    F V   D S  ++++  ++G   V+ A A +LP+ S   +A +++
Sbjct: 62  GGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLAL 121

Query: 146 A-VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178
             VL ++     + KA  E+ RV+    L++ TV
Sbjct: 122 GDVLSYVE---NKDKAFSEIRRVLVPDGLLIATV 152

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 15/146 (10%)

Query: 47  KKYVHRVYDAIAPHFSSTRFAKWPK------VATFLNSLPSGSLVLDAGCGNGKY-LGLN 99
            +   + +D+ A  ++      W        +  F   +   + VLD GCG+G     L+
Sbjct: 13  HESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLS 72

Query: 100 PDCFFV-GCDISPSLIKICVDRGH----EVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 154
              +   G DIS  +I+   +RG       +  D  +LP+ ++  +A ++I  L      
Sbjct: 73  RTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT--- 129

Query: 155 SRRKKAIEELVRVVKKGSLVLITVWA 180
               +A+ E+ RV+K      I +  
Sbjct: 130 EEPLRALNEIKRVLKSDGYACIAILG 155

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 77.2 bits (190), Expect = 8e-17
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 18/142 (12%)

Query: 50  VHRVYDAIAPHFSSTR----------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL- 98
            + ++D  A  + S            FA +  +   + +   G+ VL+ G G G      
Sbjct: 5   FNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGN-VLEFGVGTGNLTNKL 63

Query: 99  -NPDCFFVGCDISPSLIKICVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 154
                   G + S  +  I  ++      +   D ++    +   D  +S    HHL T+
Sbjct: 64  LLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSI-DTIVSTYAFHHL-TD 121

Query: 155 SRRKKAIEELVRVVKKGSLVLI 176
             +  AI +  +++ KG  ++ 
Sbjct: 122 DEKNVAIAKYSQLLNKGGKIVF 143

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 76.5 bits (188), Expect = 2e-16
 Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 18/169 (10%)

Query: 54  YDAIAPHFSSTRFAKWPKVATFLNS-----LPSGSLVLDAGCGNGKYLGL--NPDCFFVG 106
           Y  + P ++     ++      L       +     VLD  CG G +  L  +     VG
Sbjct: 6   YYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVG 65

Query: 107 CDISPSLIKI----CVDRGHEV--LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 160
            DIS  +I+        R   V  +V DA  L +     D  I I  + H        + 
Sbjct: 66  VDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF-EPLELNQV 124

Query: 161 IEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSP 209
            +E+ RV+K     ++    + +    L            + WI    P
Sbjct: 125 FKEVRRVLKPSGKFIMYFTDLRELLPRLKESLV----VGQKYWISKVIP 169

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 18/149 (12%)

Query: 50  VHRVYDAIAPHFS---STRFAKWPKVATFLNSLP--SGSLVLDAGCGNGKY------LGL 98
           V + Y +          T  +        +         ++LD G G G++      LG 
Sbjct: 5   VSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH 64

Query: 99  NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 156
                  G + +  L+++                +L          ++   L H+     
Sbjct: 65  QI----EGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM-GPGE 119

Query: 157 RKKAIEELVRVVKKGSLVLITVWAVEQED 185
              A+  L   V+ G  +L++ ++    +
Sbjct: 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE 148

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 76.4 bits (188), Expect = 2e-16
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 11/134 (8%)

Query: 52  RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGC 107
             YD     F       +    +  +       +LD G G G      +   P+  F   
Sbjct: 15  GKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLV 74

Query: 108 DISPSLIKICVDRGH-----EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 162
           D+S  +++I  +R       + + AD     +   + D  +S   +HHL  E  +K+  +
Sbjct: 75  DMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKY-DMVVSALSIHHLEDE-DKKELYK 132

Query: 163 ELVRVVKKGSLVLI 176
               ++K+  + + 
Sbjct: 133 RSYSILKESGIFIN 146

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 75.3 bits (185), Expect = 4e-16
 Identities = 27/138 (19%), Positives = 42/138 (30%), Gaps = 11/138 (7%)

Query: 52  RVYDAIAPHFSSTR----FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-LNPDCFFV- 105
             Y A A  + +T      +  P     L +      VL+   G G +   L+     V 
Sbjct: 13  SYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVT 72

Query: 106 GCDISPSLIKICVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 162
             D S  +I      G    E    D  +      + DA      L H+  + R +   E
Sbjct: 73  ALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQW-DAVFFAHWLAHV-PDDRFEAFWE 130

Query: 163 ELVRVVKKGSLVLITVWA 180
            +   V  G +V      
Sbjct: 131 SVRSAVAPGGVVEFVDVT 148

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 75.8 bits (186), Expect = 6e-16
 Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 17/179 (9%)

Query: 54  YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISP 111
           YD +  H           +A+ ++      + L+ G G G+           ++  D   
Sbjct: 12  YDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADA 71

Query: 112 SLIKI------CVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELV 165
           +++++       VDR  +V+ ADA  +P   +     I + + H +       K + E +
Sbjct: 72  AMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLV---PDWPKVLAEAI 128

Query: 166 RVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 224
           RV+K G  +L   W   +           L +++       G P  R   A+ L+ + E
Sbjct: 129 RVLKPGGALLE-GWDQAEASPEWT-----LQERWRAFAAEEGFPVERGLHAKRLKEVEE 181

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 17/148 (11%)

Query: 41  STPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY----- 95
           + P   + Y  R  +  A        A+           P G+ +LDAGCG G+      
Sbjct: 11  NNPAHSENYAQRWRNLAAAGNDIYGEARL-----IDAMAPRGAKILDAGCGQGRIGGYLS 65

Query: 96  -LGLNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 152
             G +     +G D+ P LI            +V D           D  +S   +    
Sbjct: 66  KQGHDV----LGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121

Query: 153 TESRRKKAIEELVRVVKKGSLVLITVWA 180
            E  R+ A+  + R +      +I   A
Sbjct: 122 AEDGREPALANIHRALGADGRAVIGFGA 149

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 71.0 bits (174), Expect = 2e-14
 Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 18/186 (9%)

Query: 48  KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGK---YLGLNPDCFF 104
           K   +  D I+    +  +    +       + +G+  +D G G G     L    D   
Sbjct: 11  KKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGT-CIDIGSGPGALSIALAKQSDFSI 69

Query: 105 VGCDISPSLIKI----CVDRGH----EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 156
              D S  + +I      D       +++  D  N+P   ++ D  +S   +        
Sbjct: 70  RALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW---ED 126

Query: 157 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSA 216
              A  E+ R++K G    I      +E   L    +    +   +W       +   + 
Sbjct: 127 VATAFREIYRILKSGGKTYIGGGFGNKE---LRDSISAEMIRKNPDWKEFNRKNISQENV 183

Query: 217 RTLESI 222
              +++
Sbjct: 184 ERFQNV 189

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 24/167 (14%)

Query: 46  EKKYVHRVYDAIAPHF--SSTRF-----AKWPKVATFLNSLPSGSLVLDAGCGNGK---Y 95
           E K +H     +   F  +  R          K  +F+++L   SL+ D GCG G     
Sbjct: 4   ENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMV 63

Query: 96  LGLNPDCFFVGCDISPSLIKICVDRGHE--------VLVADAVNLPYRSDFGDAAISIAV 147
           L  +      G D     I I      +         +V    +LP+R++  D   S   
Sbjct: 64  LAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123

Query: 148 LHHLSTESRRKKAIEELVRVVKKGSLVLIT--VWAVEQEDKSLVTKW 192
           ++++      ++ + E  + +KKG  + ++   W  ++    +   W
Sbjct: 124 IYNIG----FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFW 166

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 29/170 (17%), Positives = 66/170 (38%), Gaps = 18/170 (10%)

Query: 36  SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG-- 93
           S++  S  + +  ++   +  +      +  A   K  +F+N L   + + D GCG G  
Sbjct: 2   SNNNTSIHDFDFSFICNYFKLLKRQGPGSPEA-TRKAVSFINELTDDAKIADIGCGTGGQ 60

Query: 94  -KYLGLNPDCFFVGCDISPSLIKICVDRGHE--------VLVADAVNLPYRSDFGDAAIS 144
             +L         G D+ P  I+I  +   +         +     NLP++++  D   S
Sbjct: 61  TLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWS 120

Query: 145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT--VWAVEQEDKSLVTKW 192
              ++++      ++ + E  + +KKG  + ++   W   +    +   W
Sbjct: 121 EGAIYNIG----FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFW 166

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 69.2 bits (169), Expect = 1e-13
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 15/110 (13%)

Query: 79  LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKI----CVDRGHEV--LVA 127
           +     ++D GCG G    +          + G D   +L+           ++   L  
Sbjct: 20  ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEG 79

Query: 128 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177
           DA  +     + D AI  A L H+   +  +  +++++  VKKG  ++  
Sbjct: 80  DATEIELNDKY-DIAICHAFLLHM---TTPETMLQKMIHSVKKGGKIICF 125

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 65  RFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLI----KIC 117
             A+WP +   L  +  G  ++D GCG G   ++   +   + +G D+S  ++       
Sbjct: 28  GAAEWPALRAMLPEVG-GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAG 86

Query: 118 VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177
            D G     AD   L    D  D A S   LH++       +    + + +  G   + +
Sbjct: 87  PDTGITYERADLDKLHLPQDSFDLAYSSLALHYV---EDVARLFRTVHQALSPGGHFVFS 143

Query: 178 VW 179
             
Sbjct: 144 TE 145

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 12/142 (8%)

Query: 52  RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFV-GCDIS 110
            VYD +        + +W  VA  L  +  G  + D GCG G    L  D + V G D+S
Sbjct: 9   YVYDEL---MQDVPYPEW--VAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLS 63

Query: 111 PSLIKICVDRGHE------VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 164
             +++I  ++  E        V D   L          I    L++L TE+  K+  +  
Sbjct: 64  EEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSA 123

Query: 165 VRVVKKGSLVLITVWAVEQEDK 186
            R++  G  +L  V +  + + 
Sbjct: 124 ARLLTDGGKLLFDVHSPYKMET 145

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 68.2 bits (166), Expect = 4e-13
 Identities = 25/152 (16%), Positives = 47/152 (30%), Gaps = 19/152 (12%)

Query: 41  STPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL---- 96
           +   LE+ +  R+   +A      R   + +       L  G +V    CG    L    
Sbjct: 83  ALAPLERVFYERLPAVLATR---ERHGHFRRAL--QRHLRPGCVVASVPCGWMSELLALD 137

Query: 97  -GLNPDCFFVGCDISPSLIKIC--------VDRGHEVLVADAVNLPYRSDFGDAAISIAV 147
               P    VG D  P  +           +     +   DA  L  R  + D   S  +
Sbjct: 138 YSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGY-DLLTSNGL 196

Query: 148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179
             +   ++R  +      + +K G  ++ +  
Sbjct: 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFL 228

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 65.1 bits (159), Expect = 6e-13
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 14/124 (11%)

Query: 69  WPKVATFLNSLP--SGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDRGH 122
             +   +L ++      +++D GCGNG Y    L           DI+   +K   ++  
Sbjct: 3   LERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKL--YCIDINVIALKEVKEKFD 60

Query: 123 EVL-VADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 181
            V+ ++D   +P  S   D  +     H +     ++  I E+ R++K    V+I  W  
Sbjct: 61  SVITLSDPKEIPDNS-V-DFILFANSFHDMD---DKQHVISEVKRILKDDGRVIIIDWRK 115

Query: 182 EQED 185
           E   
Sbjct: 116 ENTG 119

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 21/200 (10%)

Query: 19  GESSIHSVSTGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS 78
           G   IH     E+       + +    +  +   +Y        S  +     +   LN 
Sbjct: 2   GSDKIHHHHHHENLYFQG--MTNLGTAKNFWDATLYQ----DKHSFVWQYGEDLLQLLNP 55

Query: 79  LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPY 134
            P G  +LD GCG G+            +G D + ++I+            VADA N   
Sbjct: 56  QP-GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV 114

Query: 135 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTP 194
                DA  S A+LH +      + AI  + + +K G   +      +   K ++     
Sbjct: 115 DKPL-DAVFSNAMLHWV---KEPEAAIASIHQALKSGGRFVAEFGG-KGNIKYILEAL-- 167

Query: 195 LTQKYVEEWIGPGSPRVRSP 214
                  E +G  +P+  +P
Sbjct: 168 ---YNALETLGIHNPQALNP 184

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 35  SSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL-----PSGSLVLDAG 89
           SS++     +   +    +YD +        + +    A  L +L     P  + +LD  
Sbjct: 4   SSATAGPQADYSGEIAE-LYDLVHQG-KGKDYHRE---AADLAALVRRHSPKAASLLDVA 58

Query: 90  CGNGKY-LGLNPDCFFV-GCDISPSLIKICVDRGHEV--LVADAVNLPYRSDFGDAAISI 145
           CG G +   L      V G ++S  ++ I   R  +      D  +      F  A   +
Sbjct: 59  CGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRF-SAVTCM 117

Query: 146 A-VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179
              + HL+ ++    A+E     V    +V++  W
Sbjct: 118 FSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW 152

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 64.6 bits (157), Expect = 3e-12
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 12/133 (9%)

Query: 54  YDAIAPHFSSTR-FAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDI 109
           Y  +       +   +W ++   L        VLD GCG G    Y   +     +G D+
Sbjct: 17  YSQMPRSKEGLKAAGEWHELKKMLPDFN-QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDL 75

Query: 110 SPSLIKI----CVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELV 165
           S  ++                    ++    D  +  +S   LH++++        +++ 
Sbjct: 76  SERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS---FDDICKKVY 132

Query: 166 RVVKKGSLVLITV 178
             +K     + +V
Sbjct: 133 INLKSSGSFIFSV 145

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 64.0 bits (156), Expect = 7e-12
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 9/109 (8%)

Query: 79  LPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRGH-----EVLVADAV 130
           L   S VLD G G G    Y+         G DI  +++ +  +R            D +
Sbjct: 53  LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDIL 112

Query: 131 NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179
              +  +  D   S   +  LS E+ + K  ++  + +K    +LIT +
Sbjct: 113 TKEFPENNFDLIYSRDAILALSLEN-KNKLFQKCYKWLKPTGTLLITDY 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 8e-12
 Identities = 58/380 (15%), Positives = 105/380 (27%), Gaps = 100/380 (26%)

Query: 43  PELEKK----YVHRVY---DAIAPHFSSTRFAKWPKVATFLNSL-PSGSLVLDAGCGNGK 94
           P +  +       R+Y      A +   +R   + K+   L  L P+ ++++D   G+GK
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 95  ------------YLGLNPDCFF---VGCDISPSLI-----KIC--VDRGHEVLVADAVNL 132
                                F   +    SP  +     K+   +D         + N+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 133 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELV-------RVVKK---GSLVLIT----- 177
             R     A +       L      +  +  LV       +          +L+T     
Sbjct: 224 KLRIHSIQAELR-----RLLKSKPYENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 178 ----VWAVEQEDKSLVTKWTPLTQKYVEE----WIG------P-----GSPRVRSPSART 218
               + A      SL      LT   V+     ++       P      +PR  S  A +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 219 LESIPETEDNGSEEQGKEPKQSVPDKLWESI--SLTSQSEDD--------SVISQDVKII 268
           +     T DN         K    DKL   I  SL      +        SV      I 
Sbjct: 337 IRDGLATWDNW--------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 269 TNQQEYFVPWH-LPYHRAEVSGASACALAN-GLAKKDDKKGAVVYNRYYHVFCDGELERL 326
           T        W  +              L    L +K  K+  +       ++ + +++  
Sbjct: 389 TILLSLI--WFDVIK---SDVMVVVNKLHKYSLVEKQPKESTI---SIPSIYLELKVKLE 440

Query: 327 ASDIDNAVVVDRFFDKSNWC 346
                +  +VD +     + 
Sbjct: 441 NEYALHRSIVDHYNIPKTFD 460

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 8e-08
 Identities = 62/386 (16%), Positives = 104/386 (26%), Gaps = 136/386 (35%)

Query: 34  CSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG 93
            S S   S  +L    +H +   +     S  +          N L    LVL     N 
Sbjct: 214 TSRSDHSSNIKLR---IHSIQAELRRLLKSKPYE---------NCL----LVLLNVQ-NA 256

Query: 94  KYLGLNPDCFFVGCDISPSLIKICV---DRGHEVLVADAVNLPYRSDFGDAAISIAVLHH 150
           K      + F + C       KI +    +     V D ++    +        I++ HH
Sbjct: 257 KAW----NAFNLSC-------KILLTTRFKQ----VTDFLSAATTTH-------ISLDHH 294

Query: 151 LST----ESRR------KKAIEELVRVVKKGS-LVLITVWAVEQEDKSLVTKWTPLTQKY 199
             T    E +           ++L R V   +   L  +    ++  +    W  +    
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 200 VEEWIG-------PGSPR------------VRSPSARTLESI---PETED---------N 228
           +   I        P   R               P+   L  I       D          
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-LLSLIWFDVIKSDVMVVVNKLHK 413

Query: 229 GS--EEQGKEPKQSVPDKLWESISLTSQSEDD-----SVISQDVKIITNQQEYFVP---- 277
            S  E+Q KE   S+P      + L  + E++     S++       T   +  +P    
Sbjct: 414 YSLVEKQPKESTISIPSIY---LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 278 ----WHLPYH-----RAE--------------------VSGASACALANGLAKKDDKKGA 308
                H+ +H       E                        +  A  + L      K  
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-- 528

Query: 309 VVYNRYYHVFCD--GELERLASDIDN 332
             Y  Y    CD   + ERL + I +
Sbjct: 529 -FYKPY---ICDNDPKYERLVNAILD 550

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 54  YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISP 111
           Y      F  +R     ++  ++        VLD GCG G++L L        +G DI+ 
Sbjct: 14  YFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINE 73

Query: 112 SLIKICVDRGHEVLVADAVN--LPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVK 169
            +IK C  + + V+ +DA+         + D  +    + HL  E R  + +      +K
Sbjct: 74  DMIKFCEGKFN-VVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPE-RLFELLSLCYSKMK 131

Query: 170 KGSLVLITV 178
             S ++I  
Sbjct: 132 YSSYIVIES 140

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 33/152 (21%), Positives = 48/152 (31%), Gaps = 29/152 (19%)

Query: 46  EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYL---GLN 99
           ++ Y    Y+    H          +V   +  +  G   LD GCGNG    YL   G +
Sbjct: 7   DENYFTDKYELTRTH---------SEVLEAVKVVKPGK-TLDLGCGNGRNSLYLAANGYD 56

Query: 100 PDCFFVGCDISPSLI----KICVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLS 152
                   D +   I    +I            V D  NL +   + D  +S  VL  L 
Sbjct: 57  ----VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY-DFILSTVVLMFLE 111

Query: 153 TESRRKKAIEELVRVVKKGSLVLITVWAVEQE 184
            +      I  + R  K G   LI       +
Sbjct: 112 AK-TIPGLIANMQRCTKPGGYNLIVAAMDTAD 142

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 18/161 (11%)

Query: 52  RVYDAIAPHFSSTRFAKWPKVATFLNSL-----PSGSLVLDAGCGNGKY-LGLNPDCFFV 105
            VYD         R   +   A+ +  L     P  S +LD  CG G +      +    
Sbjct: 10  DVYDLFYLG----RGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDT 65

Query: 106 -GCDISPSLIKICVDRGHEV--LVADAVNLPYRSDFGDAAISIA-VLHHLSTESRRKKAI 161
            G ++S  ++     R  +      D  +      F  A +S+   + +L T      A+
Sbjct: 66  AGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKF-SAVVSMFSSVGYLKTTEELGAAV 124

Query: 162 EELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEE 202
                 ++ G +V++  W      ++    W        + 
Sbjct: 125 ASFAEHLEPGGVVVVEPWWF---PETFADGWVSADVVRRDG 162

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 62.5 bits (152), Expect = 3e-11
 Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 22/150 (14%)

Query: 79  LPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHE--------VLVA 127
           + SG  VLD GCG GK    L    D    G  IS   +     R              A
Sbjct: 59  VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYA 118

Query: 128 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 187
           DA++LP+     DA  ++  LHH+     R +A+ E+ RV++ G  V I  +        
Sbjct: 119 DAMDLPFEDASFDAVWALESLHHM---PDRGRALREMARVLRPGGTVAIADFV------- 168

Query: 188 LVTKWTPLTQKYVEEWI-GPGSPRVRSPSA 216
           L+       ++ V+ +  G G   +     
Sbjct: 169 LLAPVEGAKKEAVDAFRAGGGVLSLGGIDE 198

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 61.2 bits (148), Expect = 3e-11
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 17/138 (12%)

Query: 39  IKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL 98
            +  PE    Y HR + +    +         ++A  L   P+  +V D GCG+ +    
Sbjct: 29  FQEDPEAFLLY-HRGFQSQVKKWPLQP---VDRIARDLRQRPASLVVADFGCGDCRLASS 84

Query: 99  NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 158
             +      D++             V V D   +P   +  D A+    L      +  +
Sbjct: 85  IRN-PVHCFDLAS--------LDPRVTVCDMAQVPLEDESVDVAVFCLSLMG----TNIR 131

Query: 159 KAIEELVRVVKKGSLVLI 176
             +EE  RV+K G L+ +
Sbjct: 132 DFLEEANRVLKPGGLLKV 149

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 61.5 bits (149), Expect = 5e-11
 Identities = 33/107 (30%), Positives = 40/107 (37%), Gaps = 16/107 (14%)

Query: 80  PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDRGHEV--LVADAVNLP 133
              + VLD GCG G Y        P+    G D+S   IK    R  +V   VA +  LP
Sbjct: 84  DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP 143

Query: 134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180
           +     DA I I                EEL RVVK G  V+     
Sbjct: 144 FSDTSMDAIIRIYAPCKA----------EELARVVKPGGWVITATPG 180

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 61.4 bits (149), Expect = 5e-11
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 19/146 (13%)

Query: 49  YVHRVYDAIAPHF-SSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNG----KYLGLNPD 101
              +++      + +S   AK   +A  +   +L     VLD   G G     +      
Sbjct: 2   GSDKIHHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK 61

Query: 102 CFFVGCDISPSLIKI----CVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 154
              V  D++  ++K+        GH   E +  DA  +P+  +           HH    
Sbjct: 62  V--VAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHF--- 116

Query: 155 SRRKKAIEELVRVVKKGSLVLITVWA 180
                 + E  RV+KKG  +L+   +
Sbjct: 117 PNPASFVSEAYRVLKKGGQLLLVDNS 142

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 60.4 bits (146), Expect = 7e-11
 Identities = 28/167 (16%), Positives = 42/167 (25%), Gaps = 21/167 (12%)

Query: 46  EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS-LPSGSLVLDAGCGNGK---YLGLNPD 101
           E +Y  + Y   A       F  +      L   L     +L  GCGN      L L   
Sbjct: 6   EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGF 65

Query: 102 CFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 156
                 D S  ++                  D   L + S   D  +    L  L    R
Sbjct: 66  PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGER 125

Query: 157 ------------RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTK 191
                         + + E+ RV+  G   +    A          +
Sbjct: 126 DPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQ 172

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 61.4 bits (149), Expect = 8e-11
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 14/112 (12%)

Query: 79  LPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHE--------VLVA 127
           L   +  LD G G G    +L           +I+P   K   +  ++        V   
Sbjct: 80  LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG 139

Query: 128 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179
             + +P   +  D   S     H      + K  +E  RV+K   ++ IT  
Sbjct: 140 SFLEIPCEDNSYDFIWSQDAFLHS---PDKLKVFQECARVLKPRGVMAITDP 188

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 20/151 (13%)

Query: 52  RVYDAIAPHFSSTRFAKWPKVATFLNSL-----PSGSLVLDAGCGNGKY-LGLNPDCFFV 105
            +YD +    +   + KW   + F+              LD  CG G     L P     
Sbjct: 8   HIYDKL--IRADVDYKKW---SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNT 62

Query: 106 -GCDISPSLIKICVDRGHE------VLVADAVNLPYRSDFGDAAISIA-VLHHLSTESRR 157
              D+S  ++    ++         +   D  NL     F D         +++      
Sbjct: 63  WAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKF-DLITCCLDSTNYIIDSDDL 121

Query: 158 KKAIEELVRVVKKGSLVLITVWAVEQEDKSL 188
           KK  + +   +K+G + +  + +  +  + L
Sbjct: 122 KKYFKAVSNHLKEGGVFIFDINSYYKLSQVL 152

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 34/170 (20%), Positives = 52/170 (30%), Gaps = 23/170 (13%)

Query: 50  VHRVYDA-IAPHFSSTRFAKWPKVATFLNSLP--SGSLVLDAGCGNGKYLGL-----NPD 101
           +   +D             +       L       G  VLD G G G YL          
Sbjct: 3   LAHKFDPSKIKKLDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEK 62

Query: 102 CFFVGCDISPSLIKICVDRGH-------EVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 154
                 D+   ++    ++ +       EVL ++   +P   +  D        H L   
Sbjct: 63  GKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHEL--- 119

Query: 155 SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 204
           S   K +EEL RV K  + + I  W      K    K  P  + Y E  +
Sbjct: 120 SEPLKFLEELKRVAKPFAYLAIIDW-----KKEERDKGPPPEEVYSEWEV 164

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 20/162 (12%)

Query: 50  VHRVYDAIAPH---FSSTRFAKWPKVATFLNSL------PSGSLVLDAGCGNGKY-LGLN 99
           ++ +Y  +A +       R  +      F+  +           VLD  CG G   L L 
Sbjct: 1   MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA 60

Query: 100 PDCFFV-GCDISPSLIKI----CVDRGHEV--LVADAVNLPYRSDFGDAAISIA-VLHHL 151
              + V G D+   ++++      +R  ++  L  D + + ++++F DA       + + 
Sbjct: 61  ERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF-DAVTMFFSTIMYF 119

Query: 152 STESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT 193
             E  R K   ++   +K G + +          +     W 
Sbjct: 120 DEEDLR-KLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWN 160

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 26/170 (15%), Positives = 47/170 (27%), Gaps = 15/170 (8%)

Query: 54  YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDI 109
           Y      F   R      +   +      +   D GCG G                G D 
Sbjct: 11  YLK----FEDERTRPARDLLAQVPLERVLN-GYDLGCGPGNSTELLTDRYGVNVITGIDS 65

Query: 110 SPSLIKICVDRG--HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRV 167
              +++   DR        AD           D   + AV   +         + +L+  
Sbjct: 66  DDDMLEKAADRLPNTNFGKADLATWKPAQKA-DLLYANAVFQWV---PDHLAVLSQLMDQ 121

Query: 168 VKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 217
           ++ G ++ + +    QE   +    T     + + + G G  R   P   
Sbjct: 122 LESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPS 171

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 58.1 bits (140), Expect = 5e-10
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 12/120 (10%)

Query: 72  VATFLNSLPSGSLVLDAGCGNGKY-LGLNPDCFFV-GCDISPSLIKI----CVDRGHEVL 125
           +  F         ++D  CGNG     L+     V G D+S S ++I             
Sbjct: 47  LPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYR 106

Query: 126 VADAVNLPYRSDF----GDAAI-SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180
           + D +     +      GDA I      HH+  E R     + L  ++ K   + +    
Sbjct: 107 LLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRE-LLGQSLRILLGKQGAMYLIELG 165

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 57.3 bits (138), Expect = 8e-10
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 18/122 (14%)

Query: 72  VATFLNSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDRGH----- 122
           V   L S+ +   V+D GCG G  L L           G D+S S+++   DR       
Sbjct: 21  VVAVLKSVNAKK-VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLP 79

Query: 123 -------EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 175
                   +  +  V    R    DAA  I V+ HL  E+R +   + L    +  ++++
Sbjct: 80  EMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIV 138

Query: 176 IT 177
            T
Sbjct: 139 ST 140

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 29/145 (20%)

Query: 54  YDAIAPHF------SSTRFAKWPKVATFLNSLP--SGSLVLDAGCGNGKYL------GLN 99
           +   A  +       +    +       L ++       VLD GCG G  L      G+ 
Sbjct: 17  WHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIE 76

Query: 100 PDCFFVGCDISPSLIKICVDRGHE------VLVADAVNLPYRSDFGDAAISIAVLHHLST 153
                VG D   +L+      G                +P   D+ D   +   L H   
Sbjct: 77  A----VGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDY-DLICANFALLHQDI 131

Query: 154 ESRRKKAIEELVRVVKKGSLVLITV 178
                + +  +  ++  G  ++I  
Sbjct: 132 I----ELLSAMRTLLVPGGALVIQT 152

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 32/153 (20%)

Query: 79  LPSGSLVLDAGCGNGKYLGLNPDCFF--------VGCDISPSLIKI----CVDRGH---E 123
             +   VLD G G G                   +G D +  ++++      ++G     
Sbjct: 19  CRAEHRVLDIGAGAGH------TALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVR 72

Query: 124 VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK-GSLVLITVWAVE 182
                A +LP+  D  D        HH    S  +KA+ E+ RV+K+ G  +L+  +A E
Sbjct: 73  FQQGTAESLPFPDDSFDIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLVDHYAPE 129

Query: 183 QEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPS 215
                ++ ++      ++     P   R  S S
Sbjct: 130 DP---VLDEF----VNHLNRLRDPSHVRESSLS 155

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 19/166 (11%)

Query: 52  RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY-LGLNPDCFFV-GCDI 109
             Y  +      T  A          + P    VL+   G G+         + V   ++
Sbjct: 57  DTYRDLIQDADGTSEA----REFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALEL 112

Query: 110 SPSLIKIC----------VDRGHEVLVADAVNLPYRSDFGDAAISIA-VLHHLSTESRRK 158
           S S++             V     ++  D         F    +  +  ++ L    RR 
Sbjct: 113 STSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRF-GTVVISSGSINELDEADRR- 170

Query: 159 KAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWI 204
                +   ++ G   L+++   E  +   + +   L  +    ++
Sbjct: 171 GLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYV 216

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 11/105 (10%)

Query: 80  PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVAD--AVNLP 133
                VLD GC +G                G +  P   +   ++   V++ D   +++P
Sbjct: 31  KEWKEVLDIGCSSGALGAAIKENGTRV--SGIEAFPEAAEQAKEKLDHVVLGDIETMDMP 88

Query: 134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178
           Y  +  D  I   VL HL         IE++   +K+  ++L ++
Sbjct: 89  YEEEQFDCVIFGDVLEHL---FDPWAVIEKVKPYIKQNGVILASI 130

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 51  HRVYDAIAP-HFSSTRFAKWPKVATFLNSLPSGSL--VLDAGCGNGKYL-GLNPDCFFV- 105
            R      P       F +         SL SG++   L+ GC  G +   L P C  + 
Sbjct: 18  ERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLT 77

Query: 106 GCDISPSLIKI----CVDRGH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 160
             D+ P  I           H      D +       F D  +   VL++L   ++ + A
Sbjct: 78  VIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELF-DLIVVAEVLYYLEDMTQMRTA 136

Query: 161 IEELVRVVKKGSLVLITVW 179
           I+ +V+++  G  ++    
Sbjct: 137 IDNMVKMLAPGGHLVFGSA 155

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 18/118 (15%)

Query: 75  FLNSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGCDISPSLIKICVDRGHEV------ 124
             N L     +LD GCG+G    +           G DI+   I++              
Sbjct: 24  IHNYLQEDDEILDIGCGSGKISLELASKGYSV--TGIDINSEAIRLAETAARSPGLNQKT 81

Query: 125 ------LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 176
                  V +A +L +     D A+  A L  +     R + I+E+ RV+K G+ + +
Sbjct: 82  GGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYL 139

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 33/193 (17%), Positives = 54/193 (27%), Gaps = 25/193 (12%)

Query: 6   VKGASDFCTLGADGESSIHSVSTGEDQRCSS------SSIKSTPELEKKYVHRVYDAIAP 59
           +KG   F  L  +G+     + T E                 + +LE             
Sbjct: 40  LKGKLKFYELTENGDVIAEHIFTPESHIPFVEPQAWHRVEALSDDLECTLGFYCKKEDYF 99

Query: 60  HFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY------LGLNPDCFFVGCDISPSL 113
                  A    V      +     VLD GCG G+       LG +        D + + 
Sbjct: 100 SKKYNTTAIHGDVVDAAKIISPCK-VLDLGCGQGRNSLYLSLLGYD----VTSWDHNENS 154

Query: 114 I----KICVDRGHEV--LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRV 167
           I    +        +   + D      + ++ D  +S  V   L+ E R    I+ +   
Sbjct: 155 IAFLNETKEKENLNISTALYDINAANIQENY-DFIVSTVVFMFLNRE-RVPSIIKNMKEH 212

Query: 168 VKKGSLVLITVWA 180
              G   LI    
Sbjct: 213 TNVGGYNLIVAAM 225

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 52.0 bits (124), Expect = 6e-08
 Identities = 26/135 (19%), Positives = 38/135 (28%), Gaps = 22/135 (16%)

Query: 49  YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY-LGLNPDCFFV-G 106
           Y H     ++       F  W         L   + VL+AGCG+G       P       
Sbjct: 21  YRHPWARVLSGPDPELTFDLW-----LSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAA 75

Query: 107 CDISPSLIKICVDR--GHEVLVADAV-NLPYRSD--FGDAAISIAVLHHLSTESRRKKAI 161
            D SP L+K+        +V   +    LP      F    +S                I
Sbjct: 76  YDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPF-GLIVSRRGPTS---------VI 125

Query: 162 EELVRVVKKGSLVLI 176
             L  +    +  L 
Sbjct: 126 LRLPELAAPDAHFLY 140

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 18/152 (11%)

Query: 67  AKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRGHE 123
           A+   +   L        ++DAGCG G               G  +S +       R  E
Sbjct: 103 AQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARE 162

Query: 124 --------VLVADAVNLPYRSDFGDAAISI-AVLHHLSTESRRKKAIEELVRVVKKGSLV 174
                     V + ++ P+      A+ +  + ++             E  R +K G   
Sbjct: 163 LRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMY-----VDLHDLFSEHSRFLKVGGRY 217

Query: 175 LITVWAVEQEDKSLVTKWTPLTQKYVEEWIGP 206
           +              +KW      + E  I  
Sbjct: 218 VTITGCWNPRYGQ-PSKWVSQINAHFECNIHS 248

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 85  VLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFG- 139
           V+D GCG G  L +    +      G D+S   ++I  +R   + +        +   G 
Sbjct: 33  VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92

Query: 140 -----------DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177
                      DAA  I V+ HL   SR       L    +   +++ T
Sbjct: 93  LTYQDKRFHGYDAATVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTT 140

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 21/144 (14%)

Query: 82  GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHE-----------VLV 126
             +VLD G G+GK+       NP    V  D   S ++    +               L 
Sbjct: 28  DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLW 87

Query: 127 ADAVNLPYRSDFGDAAISI---AVLHHLSTESRRKKAIEELVRVVKK-GSLVLITVWAVE 182
           A A  LP  S  G+  + +   ++L  +   S   + +  +  V +   S ++       
Sbjct: 88  ATAERLPPLSGVGELHVLMPWGSLLRGVLGSSP--EMLRGMAAVCRPGASFLVALNLHAW 145

Query: 183 QEDKSLVTKWTPLTQKYVEEWIGP 206
           +     V +    T    +EW+ P
Sbjct: 146 RPSVPEVGEHPEPTPDSADEWLAP 169

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 35/180 (19%)

Query: 27  STGEDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVL 86
           S+ + +  +     + PE  +K +  + D +       +F           SL  G+ VL
Sbjct: 35  SSADLKTSACKLAAAVPESHRKILADIADEVL-----EKFYGCGSTLPADGSLE-GATVL 88

Query: 87  DAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--------------------- 120
           D GCG G+ + L           +G D+  + +++                         
Sbjct: 89  DLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148

Query: 121 GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180
           G    +A A          D  IS  V +     + +    +E+ RV++ G  +  +   
Sbjct: 149 GFIENLATAEPEGVPDSSVDIVISNCVCNLS---TNKLALFKEIHRVLRDGGELYFSDVY 205

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 25/182 (13%)

Query: 43  PELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY-LGLNPD 101
            +       RV+        S R A++      L        VLD  CG G   + L  +
Sbjct: 20  DQYADGEAARVWQLYIGDTRS-RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE 78

Query: 102 CFFV-GCDISPSLIKI----CVDRGHEVLV-------ADAVNLPYRSDFG---DAAISIA 146
            F V   D S  ++K       +R  E          A+ + L      G   DA I + 
Sbjct: 79  GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLG 138

Query: 147 -VLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVE 201
               HL      +S  + A++ +  +V+ G L++I        D  L T   P  +    
Sbjct: 139 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR---NYDYILSTGCAPPGKNIYY 195

Query: 202 EW 203
           + 
Sbjct: 196 KS 197

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 50.1 bits (119), Expect = 3e-07
 Identities = 30/174 (17%), Positives = 47/174 (27%), Gaps = 30/174 (17%)

Query: 36  SSSIKSTPELEKKYVHRVYDAIAPHFSST-----------------RFAKWPKVATFLNS 78
            SS       + + +    + I  H++S                      + K       
Sbjct: 2   DSSSPLKTFRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLY 61

Query: 79  LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVA 127
              G  VLD GCG G  L          + G DI+   I     R               
Sbjct: 62  TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ 121

Query: 128 DAVNLPYRSDFGDAAISI--AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179
           D+             IS   +  +  ST      A   + R ++ G   ++TV 
Sbjct: 122 DSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 49.3 bits (117), Expect = 7e-07
 Identities = 31/237 (13%), Positives = 62/237 (26%), Gaps = 36/237 (15%)

Query: 55  DAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG-------KYLGLNPDCFFVGC 107
            A A      + A    +A     +  G  +L+ GCG G         +G        G 
Sbjct: 18  TANARTIQRRQTAHRLAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVG--SSGHVTGI 74

Query: 108 DISPSLIKICVDRGH--------------EVLVADAVN---LPYRSDFGDAAISIAVLHH 150
           DI+       +  G                V     ++    P      D  +    L +
Sbjct: 75  DIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWY 134

Query: 151 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTP-LTQKYVEEWIGPGSP 209
               +           +      V +  W+++      +      + Q  +         
Sbjct: 135 F---ASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVA 191

Query: 210 RVRS-PSARTLESIPETEDNG--SEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQ 263
            +R+  +  TL  I    DN             ++ D  WE  +  +   +  + + 
Sbjct: 192 NIRTLITPDTLAQI--AHDNTWTYTAGTIVEDPTLDDAHWEIATTNALLTELKLSTD 246

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 79  LPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKI----CVDRGH----EVLVA 127
           +  G+ +LD G G+G        +      G D+S            + G       +  
Sbjct: 34  MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN 93

Query: 128 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177
           DA          D A  +              A E L + +K G ++LI 
Sbjct: 94  DAAGYVANEKC-DVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIG 139

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 20/126 (15%)

Query: 72  VATFLNSLPSGSLVLDAGCGNGKY------LGLNPDCFFVGCDISPSLIKICVDRGHE-- 123
           + +  N +P G  +L    G G+       LG          D S   +        E  
Sbjct: 21  LVSVANQIPQGK-ILCLAEGEGRNACFLASLGYEV----TAVDQSSVGLAKAKQLAQEKG 75

Query: 124 ----VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 179
                + ++  +    +D  +  +SI         S R++   ++ + +K G + ++  +
Sbjct: 76  VKITTVQSNLADFDIVADAWEGIVSI---FCHLPSSLRQQLYPKVYQGLKPGGVFILEGF 132

Query: 180 AVEQED 185
           A EQ  
Sbjct: 133 APEQLQ 138

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 13/134 (9%)

Query: 62  SSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKIC- 117
           SS +F    +      +    S  LD G G G   K L L         DI+   +    
Sbjct: 62  SSRKF--LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAK 119

Query: 118 ---VDRGHEV---LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 171
               + G  V         +     D  D      V+ HL T+    + +      ++  
Sbjct: 120 TYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL-TDQHLAEFLRRCKGSLRPN 178

Query: 172 SLVLITVWAVEQED 185
            +++I     ++  
Sbjct: 179 GIIVIKDNMAQEGV 192

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 11/123 (8%)

Query: 73  ATFLNSLPS--GSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKIC-----VDRGH 122
             F+ SLP    S  LD G G G   K L           +    +++            
Sbjct: 83  RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVG 142

Query: 123 EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 182
           + ++A         +  D  +      +L+      K  +   + +     +        
Sbjct: 143 KFILASMETATLPPNTYDLIVIQWTAIYLTDA-DFVKFFKHCQQALTPNGYIFFKENCST 201

Query: 183 QED 185
            + 
Sbjct: 202 GDR 204

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200

 Score = 46.4 bits (109), Expect = 3e-06
 Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 16/132 (12%)

Query: 55  DAIAPHFSST-RFAKWPKVATFL-NSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGCD 108
           D +  H S+  R A      T++  ++   S +LD GCG           N    +   D
Sbjct: 21  DLLKIHSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYD 80

Query: 109 ISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 162
           I  + I              +    +  +  Y+  + D    + +L  L    ++   I 
Sbjct: 81  IDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTY-DVVFLLKMLPVL---KQQDVNIL 136

Query: 163 ELVRVVKKGSLV 174
           + +++    + V
Sbjct: 137 DFLQLFHTQNFV 148

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 30/163 (18%)

Query: 67  AKWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGH 122
            +  ++           + +D G G+G+ +      + + F++G D     +     +  
Sbjct: 15  DELTEI--IGQFDR---VHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII 69

Query: 123 E-----------VLVADAVNLPYRSDFGDAAISI-----AVLHHLSTESRRKKAIEELVR 166
           +            ++A A +LP+       +ISI      +L ++   +R    +  +  
Sbjct: 70  KKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNR--DILSNVAD 127

Query: 167 VVKK-GSLVLITVWAVEQEDKSLVTKWTPLTQK--YVEEWIGP 206
           + KK      +T ++   E+  +  +  PL  K  ++ E    
Sbjct: 128 LAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKA 170

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 30/161 (18%)

Query: 70  PKVATFLNSL--PSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGH 122
                 ++        L++D GCG G         L P    +G D+S ++IK       
Sbjct: 23  SDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKE 82

Query: 123 ---------EVLVADAVNLPYRSDFG------DAAISIAVLHHLSTESRRKKAIEELVRV 167
                       ++ + +  +           D   ++   H    E    K        
Sbjct: 83  GSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFE----KFQRSAYAN 138

Query: 168 VKKGSLVLITVWAVEQEDKSLVTKWTPLTQK--YVEEWIGP 206
           ++K   + I  W           ++  L  +  Y ++ +GP
Sbjct: 139 LRKDGTIAI--WGYADPIFPDYPEFDDLMIEVPYGKQGLGP 177

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 46.4 bits (109), Expect = 9e-06
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 19/111 (17%)

Query: 85  VLDAGCGNGKYLGL---NPDCF--FVGCDISPSLIKICVDRGH-------------EVLV 126
           ++D GCG+G  L      P      +G DISP  +       H              +  
Sbjct: 725 LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784

Query: 127 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177
              +    R    D    + V+ H+  E +  +  E+++ +     L++ T
Sbjct: 785 GSILEFDSRLHDVDIGTCLEVIEHME-EDQACEFGEKVLSLFHPKLLIVST 834

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 24/122 (19%)

Query: 79  LPSGSLVLDAGCGNG-------KYLGLNPDCFFVGCDISPSLIKICVDRGH--------E 123
           +  G  V+DA CGNG         +G   +    G DI    I     +           
Sbjct: 20  VKEGDTVVDATCGNGNDTAFLASLVG--ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVT 77

Query: 124 VLVADAVNLPYRSDFGDAAISIAVLHHLSTE-------SRRKKAIEELVRVVKKGSLVLI 176
           ++     N+    D    A+   + +  S +           +A+ + + ++  G ++ +
Sbjct: 78  LIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV 137

Query: 177 TV 178
            +
Sbjct: 138 VI 139

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 20/121 (16%)

Query: 77  NSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRGH-------EVLV 126
             L   S+V+DA  GNG    +L           D+    +     R         E+++
Sbjct: 18  EVLDDESIVVDATMGNGNDTAFL-AGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELIL 76

Query: 127 ADAVNLPYRSDFGDAAISIAVLHHLSTESRRK--------KAIEELVRVVKKGSLVLITV 178
               NL +       A  I  L +L +  +          +AIE+++  ++ G  + I +
Sbjct: 77  DGHENLDHYVREPIRAA-IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI 135

Query: 179 W 179
           +
Sbjct: 136 Y 136

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 39/298 (13%), Positives = 78/298 (26%), Gaps = 69/298 (23%)

Query: 37  SSIKSTPELEKKYVHRVYDAIAPHFSSTRFA------KWPKVATFLNSLPSGSLVLDAGC 90
           SS++S      KYV   +     H +  +        K P +   +    S   +L  G 
Sbjct: 3   SSMRSLFSDHGKYVES-FRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGG 61

Query: 91  GNG--------KYLGLNPDCF--FVGCDISPSLI----------------KICVDRGHEV 124
           G G        K     P         + S   I                K    +    
Sbjct: 62  GAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS 121

Query: 125 LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 184
                +         D    I +L+++         ++    ++   + +LI V +    
Sbjct: 122 EYQSRMLEKKELQKWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLIIVVSGSS- 177

Query: 185 DKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSA--RTLES---------------IPETED 227
                  W  L +KY   +      +  +     + L++               I +   
Sbjct: 178 ------GWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFI 231

Query: 228 NGSEE---------QGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFV 276
           +G+E          +      + P  L   +    Q  + S   +   +  N   + V
Sbjct: 232 DGNENGDLLWDFLTETCNFNATAPPDLRAELGKDLQEPEFSAKKEGKVLFNNTLSFIV 289

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 19/123 (15%)

Query: 65  RFAKWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLI----KI 116
           R+ +  K    L     G   +  G G        L           +I P +     K+
Sbjct: 106 RYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKV 165

Query: 117 CVDRGH---EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSL 173
               G     V+  D   +    +F D  +  A          +++    + R V   + 
Sbjct: 166 IEGLGVDGVNVITGDETVIDGL-EF-DVLMVAA------LAEPKRRVFRNIHRYVDTETR 217

Query: 174 VLI 176
           ++ 
Sbjct: 218 IIY 220

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 15/121 (12%)

Query: 77  NSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDR--------GHEVL 125
           +SLP G   L  GCG G     +  +P+ F VG DIS S +    +             +
Sbjct: 63  SSLPLGR-ALVPGCGGGHDVVAM-ASPERFVVGLDISESALAKANETYGSSPKAEYFSFV 120

Query: 126 VADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 185
             D         F D          +     R    + +  ++K    ++  ++ +    
Sbjct: 121 KEDVFTWRPTELF-DLIFDYVFFCAIE-PEMRPAWAKSMYELLKPDGELITLMYPITDHV 178

Query: 186 K 186
            
Sbjct: 179 G 179

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score = 42.6 bits (99), Expect = 9e-05
 Identities = 25/157 (15%), Positives = 41/157 (26%), Gaps = 26/157 (16%)

Query: 72  VATFLNSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGCDISPSLIKICVDRGH----- 122
           +            VLD GCG G    K+     +   V  DI+   +K C  R       
Sbjct: 25  LEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRIN-KLVCTDIADVSVKQCQQRYEDMKNR 83

Query: 123 ---------EVLVADAVNLPYRSDFG------DAAISIAVLHH-LSTESRRKKAIEELVR 166
                    E + AD+        F       D      V H+   +  +    +     
Sbjct: 84  RDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACE 143

Query: 167 VVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 203
            +  G   + T     +  + L    T      +   
Sbjct: 144 RLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTV 180

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 18/139 (12%), Positives = 42/139 (30%), Gaps = 12/139 (8%)

Query: 46  EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF- 104
           +++         A +F       +  V  F      G+ +L+ G   G +     + F  
Sbjct: 9   DQEIKDTAGHKYAYNFDFDVMHPF-MVRAFTPFFRPGN-LLELGSFKGDFTSRLQEHFND 66

Query: 105 -VGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 160
               + S   I     R   G   + +   +      + D  +   VL H+         
Sbjct: 67  ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRY-DNIVLTHVLEHI---DDPVAL 122

Query: 161 IEELV-RVVKKGSLVLITV 178
           ++ +    + +G  + +  
Sbjct: 123 LKRINDDWLAEGGRLFLVC 141

>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 17/168 (10%)

Query: 50  VHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGK------YLGLNPD 101
           V  V+  +    S   ++        L    + + S V D GC  G            P+
Sbjct: 26  VAEVFPDMIQR-SVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPN 84

Query: 102 CFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 155
              +G D S  +++ C            V +                I    L  L  E 
Sbjct: 85  VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPE- 143

Query: 156 RRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 203
            R   + ++   +    +++++      ED  +      L  ++    
Sbjct: 144 DRIALLTKIYEGLNPNGVLVLSEK-FRFEDTKINHLLIDLHHQFKRAN 190

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Length = 253

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 13/169 (7%)

Query: 43  PELEKKYVHRVYDAIAPHFSST-RFAKWPKVATFLNSLPSGSLVLDAGCG-NGKYLGLNP 100
             L    V +   A++ H S+  R A+   +  F+ S  +   VLD  CG N   L    
Sbjct: 69  AALSAGDVKK---ALSLHASTKERLAELDTLYDFIFSAETPRRVLDIACGLNPLALYERG 125

Query: 101 DCFFVGCDISPSLIKIC------VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 154
                GCDI   L  +        D      + D +  P  ++ GD A+   +L  L  E
Sbjct: 126 IASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP-PAEAGDLALIFKLLPLLERE 184

Query: 155 SRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 203
            +   A+  L  +      V     ++    K +   +    +  +   
Sbjct: 185 -QAGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAE 232

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 25/133 (18%), Positives = 36/133 (27%), Gaps = 31/133 (23%)

Query: 51  HRVYDAIAPHFSSTRFAKWPKV------ATFLNSLPSGSLVLDAGCGNGKYL----GLNP 100
              +  + P F +                    +        D GCG G  L     L P
Sbjct: 13  EMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQV---EFADIGCGYGGLLVELSPLFP 69

Query: 101 DCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 160
           D   +G +I   +     DR   +  A A              +IA L           A
Sbjct: 70  DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ----------NIACLRS--------NA 111

Query: 161 IEELVRVVKKGSL 173
           ++ L     KG L
Sbjct: 112 MKHLPNFFYKGQL 124

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 25/154 (16%), Positives = 42/154 (27%), Gaps = 32/154 (20%)

Query: 80  PSGSLVLDAGCGNG----KYLGLNPDCFFVGCDISPSLIKICVDR--------------- 120
            +   VL    GNG    KY         V  D     I    +R               
Sbjct: 47  SNKRKVLAIDFGNGADLEKYFYGEIA-LLVATDPDADAIARGNERYNKLNSGIKTKYYKF 105

Query: 121 --GHEVLVADAVNLPYRSDFG----DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 174
               E + +D      R  F     +       +H+          +  L  +   G  V
Sbjct: 106 DYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKV 165

Query: 175 LIT------VWAVEQEDKSLVTKWTPLTQKYVEE 202
           LIT      +  +  +   ++ K  P ++ Y+  
Sbjct: 166 LITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSV 199

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 18/88 (20%)

Query: 68  KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHE 123
           KW  +  F N  P   + ++ G G G ++      NPD  ++G DI  S++   +D+  E
Sbjct: 33  KWRDL--FGNDNP---IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE 87

Query: 124 -------VLVADAVNLPYRSDFGDAAIS 144
                  +L  D  +L     F D  I 
Sbjct: 88  VGVPNIKLLWVDGSDLTDY--FEDGEID 113

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 18/88 (20%)

Query: 68  KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHE 123
           KW  V  F N  P   + ++ G G G+++      NPD  ++G ++  S+I   V +  +
Sbjct: 30  KWNTV--FGNDNP---IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD 84

Query: 124 -------VLVADAVNLPYRSDFGDAAIS 144
                  +L  DA  L     F    + 
Sbjct: 85  SEAQNVKLLNIDADTLTDV--FEPGEVK 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	353
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.83
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.83
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.82
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.81
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.8
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.8
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.8
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.79
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.78
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.78
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.77
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.76
3ocj_A	305	Putative exported protein; structural genomics, PS	99.75
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.75
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.75
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.75
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.75
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.74
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.74
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.73
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.73
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.73
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.72
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.71
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.71
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.71
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.7
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.7
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.69
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.69
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.69
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.69
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.68
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.68
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.68
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.67
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.67
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.67
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.67
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.67
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.66
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.66
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.66
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.66
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.66
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.65
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.65
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.65
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.65
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.65
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.63
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.63
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.63
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.63
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.63
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.63
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.63
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.62
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.62
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.62
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.62
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.61
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.61
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.61
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.61
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.6
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.6
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.59
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.59
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.58
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.58
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.58
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.58
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.57
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.56
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.56
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.56
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.55
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.53
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.53
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.52
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.52
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.49
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.49
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.48
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.48
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.46
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.46
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.45
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.45
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.45
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.45
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.44
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.44
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.44
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.44
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.43
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.43
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.43
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.43
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.42
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.42
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.42
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.42
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.42
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.42
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.41
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.41
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.41
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.41
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.4
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.4
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.4
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.4
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.4
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.4
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.39
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.39
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.39
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.39
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.38
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.38
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.38
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.38
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.37
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.37
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.37
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.37
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.37
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.35
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.35
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.35
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.35
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.34
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.34
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.34
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.33
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.33
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.32
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.32
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.32
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.32
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.32
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.31
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.31
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.31
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.3
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.3
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.3
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.3
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.3
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.29
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.29
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.28
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.28
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.27
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.27
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.27
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.26
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.26
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.26
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.26
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.26
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.25
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.25
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.24
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.24
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.24
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.24
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.24
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.24
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.23
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.23
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.23
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.23
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.21
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.21
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.21
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.21
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.21
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.21
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.2
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.19
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.19
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.18
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.18
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.18
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.18
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.17
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.17
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.17
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.16
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.16
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.15
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.15
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.15
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.15
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.14
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.13
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.13
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.12
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.12
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.12
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.11
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.11
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.11
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.1
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.09
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.08
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.08
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.06
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.06
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.06
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.05
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.04
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.04
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.04
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.03
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.03
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.01
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.01
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.01
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.01
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.01
2o07_A	304	Spermidine synthase; structural genomics, structur	99.0
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.99
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.99
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.99
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.98
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.98
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.98
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.96
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.95
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.93
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.93
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.92
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.91
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.91
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.9
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.89
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.87
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.87
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.87
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.85
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.84
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.82
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.8
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.76
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.73
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.7
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.69
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.67
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.63
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.62
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.6
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.6
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.58
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.51
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.51
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.45
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.41
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.4
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.38
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.36
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.34
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.29
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.25
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.25
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.24
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.21
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.21
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.21
3lkd_A	542	Type I restriction-modification system methyltrans	98.21
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.19
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.16
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.15
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.11
3khk_A	544	Type I restriction-modification system methylation	98.08
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.07
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.05
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.95
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.92
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.91
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.84
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.81
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.78
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.76
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.66
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.65
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.57
3ufb_A	530	Type I restriction-modification system methyltran	97.48
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.47
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.34
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.19
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.16
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.16
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.82
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.81
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.7
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.69
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.24
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	95.09
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.06
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.8
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.45
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	94.43
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.31
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.28
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.2
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.11
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.78
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.6
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.39
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.38
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	93.11
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	92.88
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	92.82
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	92.63
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	92.48
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.4
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.38
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	92.33
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.27
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	91.56
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	91.45
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	91.43
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	91.26
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	91.07
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	91.04
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	90.86
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	90.79
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.68
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	90.66
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	90.58
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	90.57
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	90.57
3gms_A	340	Putative NADPH:quinone reductase; structural genom	90.46
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	90.36
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	90.16
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	90.15
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	90.07
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	89.78
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	89.68
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	89.67
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	89.52
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	89.35
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	88.37
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.33
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	88.27
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	88.04
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	87.95
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	87.83
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	87.68
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	87.63
2zig_A	297	TTHA0409, putative modification methylase; methylt	87.62
4eye_A	342	Probable oxidoreductase; structural genomics, niai	87.59
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	86.78
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	86.6
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	86.43
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	85.31
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	84.95
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	84.48
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	84.44
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	84.39
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	84.14
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	83.91
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	83.33
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	82.95
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	82.55
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	82.37
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	82.35
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	82.27
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	82.11
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	81.5
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	81.25
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	80.73
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	80.26

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.83  E-value=5.9e-21  Score=176.35  Aligned_cols=130  Identities=18%  Similarity=0.208  Sum_probs=99.0

Q ss_pred             HHHHHHhhccccccccccChHHHHHHHhC-CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-CCeEE
Q 018606           50 VHRVYDAIAPHFSSTRFAKWPKVATFLNS-LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-GHEVL  125 (353)
Q Consensus        50 v~~~yd~~a~~y~~~~~~~~~~~~~~l~~-l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-~i~~~  125 (353)
                      +.+.|+..|..|+..|..+...+..++.. .+.+.+|||||||+|.++..  ..+.+|+|+|+|+.|++.|+++ ++.++
T Consensus         7 f~d~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~   86 (257)
T 4hg2_A            7 FKDHFTPVADAYRAFRPRYPRALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYA   86 (257)
T ss_dssp             -------------CCCCCCCHHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceee
Confidence            35668888888887776555666666653 45567999999999998653  5567999999999999998876 89999


Q ss_pred             EeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          126 VADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       126 ~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ++|++++|+++++||+|++..++||+.    +..+++++.|+|||||+|++..+....
T Consensus        87 ~~~~e~~~~~~~sfD~v~~~~~~h~~~----~~~~~~e~~rvLkpgG~l~~~~~~~~~  140 (257)
T 4hg2_A           87 VAPAEDTGLPPASVDVAIAAQAMHWFD----LDRFWAELRRVARPGAVFAAVTYGLTR  140 (257)
T ss_dssp             ECCTTCCCCCSSCEEEEEECSCCTTCC----HHHHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred             hhhhhhhcccCCcccEEEEeeehhHhh----HHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            999999999999999999999999885    467999999999999999998876543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.83  E-value=8.3e-21  Score=175.71  Aligned_cols=101  Identities=18%  Similarity=0.325  Sum_probs=87.7

Q ss_pred             CCCCCCEEEEECCccccccc----c--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      .+++|.+|||||||+|.++.    .  .++++|+|+|+|+.|++.|+++        +++++++|+.++|++  .||+|+
T Consensus        67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~  144 (261)
T 4gek_A           67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVV  144 (261)
T ss_dssp             HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEE
T ss_pred             hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccce
Confidence            47899999999999998642    2  4678999999999999999986        478999999998874  599999


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +..++||+++.+ +..+|++++|+|||||+|++.....
T Consensus       145 ~~~~l~~~~~~~-~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          145 LNFTLQFLEPSE-RQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             EESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             eeeeeeecCchh-HhHHHHHHHHHcCCCcEEEEEeccC
Confidence            999999998655 5789999999999999999987543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.82  E-value=3e-20  Score=165.09  Aligned_cols=129  Identities=24%  Similarity=0.295  Sum_probs=110.5

Q ss_pred             HHHHHHHHhhccccccccccChHHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-CCeE
Q 018606           48 KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-GHEV  124 (353)
Q Consensus        48 ~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-~i~~  124 (353)
                      +...++|+..+..|+..... ...+..++..++++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++ ++.+
T Consensus        11 ~~~~~~~~~~~~~y~~~~~~-~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~   89 (211)
T 3e23_A           11 DDTLRFYRGNATAYAERQPR-SATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPV   89 (211)
T ss_dssp             HHHHHHHHHSHHHHTTCCCC-CHHHHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHhhccch-hHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCce
Confidence            35567888888888764433 667778888888999999999999998642  3467999999999999999998 8999


Q ss_pred             EEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          125 LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       125 ~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..+|+..++ .+++||+|++..+++|++..+ +..+|+++.++|||||++++.++
T Consensus        90 ~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~  142 (211)
T 3e23_A           90 RTMLFHQLD-AIDAYDAVWAHACLLHVPRDE-LADVLKLIWRALKPGGLFYASYK  142 (211)
T ss_dssp             EECCGGGCC-CCSCEEEEEECSCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeeeccCC-CCCcEEEEEecCchhhcCHHH-HHHHHHHHHHhcCCCcEEEEEEc
Confidence            999999998 789999999999999998433 78999999999999999999864

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.81  E-value=2.2e-19  Score=159.53  Aligned_cols=133  Identities=17%  Similarity=0.069  Sum_probs=110.9

Q ss_pred             HHHHHHHHHhhccccccc----cccChHHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc
Q 018606           47 KKYVHRVYDAIAPHFSST----RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~----~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      .+...++|+..+..|+..    .......+...+..+.++.+|||||||+|.++..  ..+.+|+|+|+|+.|++.|++.
T Consensus         8 ~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~   87 (218)
T 3ou2_A            8 IESQLSYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRH   87 (218)
T ss_dssp             HHHHHHHHHHHGGGHHHHHHHHHTTTHHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhc
Confidence            455678899988888652    1233556777777788889999999999997642  2367999999999999999986


Q ss_pred             ---CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          121 ---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       121 ---~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                         +++++.+|+..+ +++++||+|++..+++|+++++ ...+|+++.++|+|||.+++.++..
T Consensus        88 ~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A           88 GLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDR-FEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             CCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CCCCeEEEecccccC-CCCCceeEEEEechhhcCCHHH-HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence               478999999988 7789999999999999998743 5789999999999999999998765

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.80  E-value=1.1e-19  Score=163.83  Aligned_cols=113  Identities=19%  Similarity=0.296  Sum_probs=95.4

Q ss_pred             hHHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCc
Q 018606           69 WPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFG  139 (353)
Q Consensus        69 ~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~f  139 (353)
                      +..+..++....++.+|||||||+|.++.    ..++..++|+|+|+.|++.|+++     ++.++++|+..++++ ++|
T Consensus        32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~f  110 (234)
T 3dtn_A           32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKY  110 (234)
T ss_dssp             HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCE
T ss_pred             HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCc
Confidence            34444555445678999999999999754    35688999999999999999987     688999999999886 899


Q ss_pred             cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          140 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       140 D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      |+|++..+++|+++.+ ...+|+++.++|||||++++.++....
T Consensus       111 D~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~  153 (234)
T 3dtn_A          111 DMVVSALSIHHLEDED-KKELYKRSYSILKESGIFINADLVHGE  153 (234)
T ss_dssp             EEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred             eEEEEeCccccCCHHH-HHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence            9999999999997644 457999999999999999999876543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.80  E-value=5.2e-19  Score=162.48  Aligned_cols=103  Identities=19%  Similarity=0.304  Sum_probs=91.0

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEech-hhhhcC
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIA-VLHHLS  152 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~-vl~h~~  152 (353)
                      .++++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++  ++.++++|+..+++ +++||+|++.. +|+|+.
T Consensus        47 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~  125 (263)
T 3pfg_A           47 HSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLA  125 (263)
T ss_dssp             HCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSC
T ss_pred             hCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcC
Confidence            356778999999999998642  4467999999999999999998  79999999999988 78999999998 999998


Q ss_pred             ChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          153 TESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +.+....+|+++.++|||||.++|..|..
T Consensus       126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  154 (263)
T 3pfg_A          126 GQAELDAALERFAAHVLPDGVVVVEPWWF  154 (263)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            76668899999999999999999986643

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.80  E-value=2.6e-19  Score=159.78  Aligned_cols=129  Identities=19%  Similarity=0.262  Sum_probs=93.5

Q ss_pred             HHHHHhhcccccccc----------ccChHHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHH
Q 018606           51 HRVYDAIAPHFSSTR----------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICV  118 (353)
Q Consensus        51 ~~~yd~~a~~y~~~~----------~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~  118 (353)
                      .++|+.++..|+...          ...+..+...+.. .++.+|||||||+|.++..  ..+..++|+|+|+.|++.|+
T Consensus         6 ~~~f~~~a~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   84 (220)
T 3hnr_A            6 NGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVN-KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAK   84 (220)
T ss_dssp             ------------------CCTTTTTTTTHHHHHHHHHH-TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHhhc-cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            456777777776421          1223444444432 3678999999999998642  33779999999999999999


Q ss_pred             Hc---CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          119 DR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       119 ~~---~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ++   +++++.+|+..++++ ++||+|++..+++|+++.+ ...+|+++.++|||||.+++.++...
T Consensus        85 ~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~  149 (220)
T 3hnr_A           85 EKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDE-KNVAIAKYSQLLNKGGKIVFADTIFA  149 (220)
T ss_dssp             HHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCHHH-HHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred             HhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCChHH-HHHHHHHHHHhcCCCCEEEEEecccc
Confidence            88   789999999999987 9999999999999998754 34599999999999999999986543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.79  E-value=1.3e-18  Score=157.20  Aligned_cols=109  Identities=14%  Similarity=0.085  Sum_probs=92.2

Q ss_pred             HHHHHhCC-CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEE
Q 018606           72 VATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        72 ~~~~l~~l-~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      +..++... .++.+|||||||+|.++..  ..+..++|+|+|+.|++.|+++      ++.++++|+..++++ +.||+|
T Consensus        27 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v  105 (246)
T 1y8c_A           27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLI  105 (246)
T ss_dssp             HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEE
T ss_pred             HHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEE
Confidence            34444433 4778999999999998642  3367999999999999999887      689999999998876 889999


Q ss_pred             Eech-hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          143 ISIA-VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       143 i~~~-vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ++.. +++|+.+.+.+..+|+++.++|+|||++++.++..
T Consensus       106 ~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A          106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             EECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             EEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            9998 99999776668899999999999999999987653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.78  E-value=1.5e-19  Score=160.40  Aligned_cols=99  Identities=20%  Similarity=0.307  Sum_probs=87.5

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      ..++ +|||||||+|.++..   .++..++|+|+|+.+++.|+++        +++++++|+..+++++++||+|++..+
T Consensus        42 ~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  120 (219)
T 3dlc_A           42 ITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGS  120 (219)
T ss_dssp             CCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred             CCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECch
Confidence            3445 999999999997542   3678999999999999999887        578999999999998999999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ++|+.+   +..+|+++.++|+|||.+++..+..
T Consensus       121 l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          121 VFFWED---VATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             GGGCSC---HHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HhhccC---HHHHHHHHHHhCCCCCEEEEEeccC
Confidence            999977   6889999999999999999987543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.78  E-value=2.5e-18  Score=155.37  Aligned_cols=128  Identities=23%  Similarity=0.368  Sum_probs=97.4

Q ss_pred             HHHhhcccccccc-ccChHHHHH-HHhCCCCCCEEEEECCcccccccc-CCCcEEEEEeCCHHHHHHHHHc------CCe
Q 018606           53 VYDAIAPHFSSTR-FAKWPKVAT-FLNSLPSGSLVLDAGCGNGKYLGL-NPDCFFVGCDISPSLIKICVDR------GHE  123 (353)
Q Consensus        53 ~yd~~a~~y~~~~-~~~~~~~~~-~l~~l~~~~~VLDvGCG~G~~~~~-~~~~~v~gvD~S~~~l~~a~~~------~i~  123 (353)
                      .|+.++..|+... ...+..+.. ++..++++.+|||||||+|.++.. .....++|+|+|+.|++.|+++      +++
T Consensus         3 ~y~~~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~   82 (243)
T 3d2l_A            3 AYEQFAYVYDELMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVD   82 (243)
T ss_dssp             ---CTTHHHHHHTTTCCHHHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCE
T ss_pred             hHHHHHHHHHHhhhcccHHHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceE
Confidence            3555555554411 122333333 334567789999999999997642 1118999999999999999876      589


Q ss_pred             EEEeeCCCCCCCCCCccEEEech-hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          124 VLVADAVNLPYRSDFGDAAISIA-VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       124 ~~~~D~~~l~~~~~~fD~Vi~~~-vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ++.+|+..++++ ++||+|++.. +++|+.+.+.+..+++++.++|+|||++++.++..
T Consensus        83 ~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  140 (243)
T 3d2l_A           83 FWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP  140 (243)
T ss_dssp             EEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             EEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence            999999998875 8899999987 99999777668899999999999999999988654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.77  E-value=3.2e-18  Score=152.56  Aligned_cols=107  Identities=28%  Similarity=0.378  Sum_probs=92.5

Q ss_pred             HHHHHHHhCCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCC
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSD  137 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~  137 (353)
                      ..+...+ .+.++.+|||||||+|.++..     .+...|+|+|+|+.+++.|+++       +++++.+|+..++++++
T Consensus        27 ~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~  105 (219)
T 3dh0_A           27 EKVLKEF-GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN  105 (219)
T ss_dssp             HHHHHHH-TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred             HHHHHHh-CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence            3444444 456788999999999997642     3668999999999999999886       48899999999999899


Q ss_pred             CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +||+|++..+++|+.+   +..+++++.++|+|||.+++..|.
T Consensus       106 ~fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          106 TVDFIFMAFTFHELSE---PLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             CEEEEEEESCGGGCSS---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CeeEEEeehhhhhcCC---HHHHHHHHHHHhCCCeEEEEEEec
Confidence            9999999999999987   688999999999999999998764

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.76  E-value=3.1e-18  Score=153.33  Aligned_cols=105  Identities=22%  Similarity=0.329  Sum_probs=90.0

Q ss_pred             HHHHHhCCCCCCEEEEECCccccccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606           72 VATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHL  151 (353)
Q Consensus        72 ~~~~l~~l~~~~~VLDvGCG~G~~~~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~  151 (353)
                      ...++..+.++.+|||||||+|.++......  +|+|+|+.|++.|+++++.++.+|+..+++++++||+|++..+++|+
T Consensus        38 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (219)
T 1vlm_A           38 ELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK--IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFV  115 (219)
T ss_dssp             HHHHHHHHCCSSCEEEETCTTSTTHHHHTCC--EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred             HHHHHHHhCCCCcEEEeCCCCCHHHHHHHHH--hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhc
Confidence            3344444445889999999999986532222  99999999999999999999999999999888899999999999999


Q ss_pred             CChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          152 STESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       152 ~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .+   +..+|+++.++|+|||.+++.++..
T Consensus       116 ~~---~~~~l~~~~~~L~pgG~l~i~~~~~  142 (219)
T 1vlm_A          116 DD---PERALKEAYRILKKGGYLIVGIVDR  142 (219)
T ss_dssp             SC---HHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cC---HHHHHHHHHHHcCCCcEEEEEEeCC
Confidence            87   6789999999999999999998754

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.75  E-value=3e-18  Score=161.31  Aligned_cols=104  Identities=19%  Similarity=0.180  Sum_probs=91.3

Q ss_pred             hCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      ..+.++.+|||||||+|.++.     ..++..|+|+|+|+.+++.|+++        +++++++|+..++++ ++||+|+
T Consensus       114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~  192 (305)
T 3ocj_A          114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLT  192 (305)
T ss_dssp             HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEE
T ss_pred             hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEE
Confidence            356788999999999999643     35678999999999999999986        278999999999987 9999999


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +..+++|+++.+....+++++.++|||||++++.++..
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            99999999987666678999999999999999987664

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.75  E-value=8.8e-18  Score=151.34  Aligned_cols=103  Identities=19%  Similarity=0.292  Sum_probs=88.4

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEe-chhhhhcCC
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAIS-IAVLHHLST  153 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~-~~vl~h~~~  153 (353)
                      +.++.+|||||||+|.++..  ..+..++|+|+|+.|++.|+++  ++.++.+|+..+++ +++||+|+| ..+++|+.+
T Consensus        38 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~  116 (239)
T 3bxo_A           38 TPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT  116 (239)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred             cCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence            46788999999999997642  2234899999999999999987  68999999999887 789999996 559999987


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .+....+|+++.++|+|||.+++.++...
T Consensus       117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (239)
T 3bxo_A          117 TEELGAAVASFAEHLEPGGVVVVEPWWFP  145 (239)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence            66688999999999999999999876543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.75  E-value=2.1e-18  Score=155.81  Aligned_cols=133  Identities=11%  Similarity=0.113  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHhhccccccc--cccChHHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-
Q 018606           46 EKKYVHRVYDAIAPHFSST--RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-  120 (353)
Q Consensus        46 e~~~v~~~yd~~a~~y~~~--~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-  120 (353)
                      ++.+..++|+..+..|...  ....+..+...+....++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++ 
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~   84 (250)
T 2p7i_A            5 SRNYDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL   84 (250)
T ss_dssp             ------------------CHHHHTHHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS
T ss_pred             CCCCCHHHHhhHHHHhcCccchhhHHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhh
Confidence            3444566777777766431  1223455666666666778999999999998642  3455899999999999999987 


Q ss_pred             --CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHH-hccccCcEEEEEEcCCC
Q 018606          121 --GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELV-RVVKKGSLVLITVWAVE  182 (353)
Q Consensus       121 --~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~-rvLkpgG~lli~~~~~~  182 (353)
                        +++++++|+..+ +++++||+|++..+|+|+++   +..+|+++. |+|||||++++.++...
T Consensus        85 ~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~~LkpgG~l~i~~~~~~  145 (250)
T 2p7i_A           85 KDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD---PVALLKRINDDWLAEGGRLFLVCPNAN  145 (250)
T ss_dssp             CSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS---HHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred             hCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC---HHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence              689999999888 46789999999999999998   678999999 99999999999987654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.75  E-value=1.2e-18  Score=153.74  Aligned_cols=132  Identities=14%  Similarity=0.183  Sum_probs=106.3

Q ss_pred             HHHHHHHhhcccccccc------ccChHHHH-HHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHH
Q 018606           49 YVHRVYDAIAPHFSSTR------FAKWPKVA-TFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD  119 (353)
Q Consensus        49 ~v~~~yd~~a~~y~~~~------~~~~~~~~-~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~  119 (353)
                      .+.++|+.++..|+...      ...+..+. .++...  +.+|||||||+|.++..  ..+..++|+|+|+.|++.|++
T Consensus         4 ~~~~~y~~~a~~y~~~~~~~~~~~~~~~~~l~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~   81 (203)
T 3h2b_A            4 DVSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGV--DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQ   81 (203)
T ss_dssp             HHHHHHHCTTTCHHHHTCSSCCTTCTTHHHHHHHHHHC--CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHhhhhccccHHHHHHHHHHhccC--CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence            46788999998885421      12333333 333322  78999999999997642  336799999999999999998


Q ss_pred             c--CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          120 R--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       120 ~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +  ++.++++|+..+++++++||+|++..+++|++..+ +..+|+++.++|+|||++++.++....
T Consensus        82 ~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~L~pgG~l~i~~~~~~~  146 (203)
T 3h2b_A           82 THPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE-LPDALVALRMAVEDGGGLLMSFFSGPS  146 (203)
T ss_dssp             HCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT-HHHHHHHHHHTEEEEEEEEEEEECCSS
T ss_pred             hCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH-HHHHHHHHHHHcCCCcEEEEEEccCCc
Confidence            7  79999999999998889999999999999997333 789999999999999999999876543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.75  E-value=4e-18  Score=151.15  Aligned_cols=127  Identities=19%  Similarity=0.296  Sum_probs=103.4

Q ss_pred             HHHhhccccccccccC---h--HHHHHHHhC-CCCCCEEEEECCccccccccCCCc-EEEEEeCCHHHHHHHHHc--CCe
Q 018606           53 VYDAIAPHFSSTRFAK---W--PKVATFLNS-LPSGSLVLDAGCGNGKYLGLNPDC-FFVGCDISPSLIKICVDR--GHE  123 (353)
Q Consensus        53 ~yd~~a~~y~~~~~~~---~--~~~~~~l~~-l~~~~~VLDvGCG~G~~~~~~~~~-~v~gvD~S~~~l~~a~~~--~i~  123 (353)
                      +|+.++..|+......   +  .....++.. +.++.+|||||||+|.++... +. .++|+|+|+.|++.|+++  ++.
T Consensus         2 ~fd~~a~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~~a~~~~~~~~   80 (211)
T 2gs9_A            2 PFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLAVGRRRAPEAT   80 (211)
T ss_dssp             TTTTTTTTTTGGGGSHHHHHHHHHHHHHHHTTCCCCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHHHHHHHCTTSE
T ss_pred             chhhHHHHHHHHhcccchhhhHHHHHHHHHHhcCCCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcE
Confidence            4677777776532211   1  222334433 347889999999999987655 66 999999999999999997  799


Q ss_pred             EEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          124 VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       124 ~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ++.+|+..+++++++||+|++..+++|+++   +..+|+++.++|||||.+++.++....
T Consensus        81 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~~  137 (211)
T 2gs9_A           81 WVRAWGEALPFPGESFDVVLLFTTLEFVED---VERVLLEARRVLRPGGALVVGVLEALS  137 (211)
T ss_dssp             EECCCTTSCCSCSSCEEEEEEESCTTTCSC---HHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred             EEEcccccCCCCCCcEEEEEEcChhhhcCC---HHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence            999999999998899999999999999987   678999999999999999999987653

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.74  E-value=3.1e-18  Score=154.77  Aligned_cols=133  Identities=23%  Similarity=0.362  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhhccccccccccChH-----HHHH-HHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHH
Q 018606           47 KKYVHRVYDAIAPHFSSTRFAKWP-----KVAT-FLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICV  118 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~~~~~~~-----~~~~-~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~  118 (353)
                      .+...++|+..+..|+......|.     .+.. +...++++.+|||||||+|.++..  ..+..|+|+|+|+.+++.|+
T Consensus        13 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~   92 (242)
T 3l8d_A           13 HESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGK   92 (242)
T ss_dssp             -------------------CHHHHTSTTTTHHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHH
Confidence            345667888888777754333231     2233 333467889999999999997642  33779999999999999999


Q ss_pred             Hc----CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          119 DR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       119 ~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ++    +++++++|+..+++++++||+|++..+++|+.+   +..+|+++.++|+|||++++.++...
T Consensus        93 ~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~  157 (242)
T 3l8d_A           93 ERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE---PLRALNEIKRVLKSDGYACIAILGPT  157 (242)
T ss_dssp             TTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSC---HHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             hhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccC---HHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence            87    689999999999998999999999999999987   67899999999999999999987644

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.74  E-value=3.2e-18  Score=157.53  Aligned_cols=127  Identities=27%  Similarity=0.445  Sum_probs=97.9

Q ss_pred             HHHhhccccccccccChHHHHHHHh--CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-CCeEEEe
Q 018606           53 VYDAIAPHFSSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-GHEVLVA  127 (353)
Q Consensus        53 ~yd~~a~~y~~~~~~~~~~~~~~l~--~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~  127 (353)
                      +|+.++..|+..+.........++.  .+.++.+|||||||+|.++..  .++..|+|+|+|+.|++.|+++ +++++++
T Consensus         4 ~y~~~a~~y~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~   83 (261)
T 3ege_A            4 IYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTG   83 (261)
T ss_dssp             ---------CCSBCCCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECC
T ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEEC
Confidence            6888888888765443332222222  346789999999999998642  5788999999999999998877 8899999


Q ss_pred             eCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          128 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       128 D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      |+..+++++++||+|++..+++|+.+   +..+++++.++|| ||.+++..+....
T Consensus        84 d~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~Lk-gG~~~~~~~~~~~  135 (261)
T 3ege_A           84 YAENLALPDKSVDGVISILAIHHFSH---LEKSFQEMQRIIR-DGTIVLLTFDIRL  135 (261)
T ss_dssp             CTTSCCSCTTCBSEEEEESCGGGCSS---HHHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred             chhhCCCCCCCEeEEEEcchHhhccC---HHHHHHHHHHHhC-CcEEEEEEcCCch
Confidence            99999998999999999999999987   7899999999999 9999998886543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.73  E-value=3e-17  Score=151.47  Aligned_cols=101  Identities=18%  Similarity=0.163  Sum_probs=81.5

Q ss_pred             CCCCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHHc-----------------------------------
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR-----------------------------------  120 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~~-----------------------------------  120 (353)
                      ..++.+|||||||+|.+...  ..++ .|+|+|+|+.|++.|+++                                   
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            45678999999999987543  4454 799999999999998763                                   


Q ss_pred             -CC-eEEEeeCCCC-CC---CCCCccEEEechhhhhc-CChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          121 -GH-EVLVADAVNL-PY---RSDFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       121 -~i-~~~~~D~~~l-~~---~~~~fD~Vi~~~vl~h~-~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                       ++ .++++|+... |+   ..++||+|+++.+|||+ ++.+....+|++++++|||||+|++..+
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence             12 2889999883 43   25799999999999997 4444578899999999999999999864

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.73  E-value=2.3e-18  Score=152.93  Aligned_cols=101  Identities=19%  Similarity=0.293  Sum_probs=85.6

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------------------CCeEEEeeCCCCCCCC-
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------------------GHEVLVADAVNLPYRS-  136 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------------------~i~~~~~D~~~l~~~~-  136 (353)
                      ++++.+|||+|||+|.++..  ..+..|+|+|+|+.|++.|+++                   +++++++|+..+++.+ 
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~   99 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   99 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence            46788999999999997642  3477999999999999999875                   4789999999999765 


Q ss_pred             CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          137 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++||+|++..+++|++..+ +..+++++.|+|||||++++.+..
T Consensus       100 ~~fD~v~~~~~l~~l~~~~-~~~~l~~~~r~LkpgG~~~l~~~~  142 (203)
T 1pjz_A          100 GHCAAFYDRAAMIALPADM-RERYVQHLEALMPQACSGLLITLE  142 (203)
T ss_dssp             HSEEEEEEESCGGGSCHHH-HHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             CCEEEEEECcchhhCCHHH-HHHHHHHHHHHcCCCcEEEEEEEe
Confidence            7999999999999997543 678999999999999995555543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.73  E-value=1.2e-17  Score=153.55  Aligned_cols=134  Identities=15%  Similarity=0.146  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHhhccccccccccChHHHHHHHh---CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHH
Q 018606           44 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICV  118 (353)
Q Consensus        44 ~~e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~---~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~  118 (353)
                      .++.+++.+.|......|....  .-+.+..++.   ...++.+|||+|||+|..+..  ..|..|+|+|+|+.|++.|+
T Consensus        30 ~~~~~~Wd~~y~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~  107 (252)
T 2gb4_A           30 VLTLEDWKEKWVTRHISFHQEQ--GHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFF  107 (252)
T ss_dssp             CCCHHHHHHHHHHTCCTTCCTT--CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCCCcccCC--CCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH
Confidence            3457788888887544443222  2223333332   235788999999999997642  45789999999999999997


Q ss_pred             Hc------------------------CCeEEEeeCCCCCCCC-CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcE
Q 018606          119 DR------------------------GHEVLVADAVNLPYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSL  173 (353)
Q Consensus       119 ~~------------------------~i~~~~~D~~~l~~~~-~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~  173 (353)
                      ++                        +++++++|+..+++.+ ++||+|++..+++|++..+ +..+++++.++|||||+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~-~~~~l~~~~~~LkpGG~  186 (252)
T 2gb4_A          108 AEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGD-HDRYADIILSLLRKEFQ  186 (252)
T ss_dssp             HHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGG-HHHHHHHHHHTEEEEEE
T ss_pred             HhcccccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHH-HHHHHHHHHHHcCCCeE
Confidence            53                        3689999999998764 8999999999999997544 67899999999999999


Q ss_pred             EEEEEcC
Q 018606          174 VLITVWA  180 (353)
Q Consensus       174 lli~~~~  180 (353)
                      +++.++.
T Consensus       187 l~l~~~~  193 (252)
T 2gb4_A          187 YLVAVLS  193 (252)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9766543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.72  E-value=5.4e-17  Score=145.44  Aligned_cols=105  Identities=27%  Similarity=0.415  Sum_probs=91.8

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----C--------CeEEEeeCCCCCCCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--------HEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----~--------i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      .++++.+|||||||+|.++..  ..+..|+|+|+|+.+++.|+++    +        +.++.+|+..+++++++||+|+
T Consensus        27 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  106 (235)
T 3sm3_A           27 YLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV  106 (235)
T ss_dssp             HCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence            356889999999999997642  3377999999999999999985    2        4889999999998899999999


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +..+++|+++.+....+|+++.++|||||++++.++...
T Consensus       107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (235)
T 3sm3_A          107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN  145 (235)
T ss_dssp             EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred             EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence            999999999866566999999999999999999987653

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.71  E-value=3.1e-18  Score=155.27  Aligned_cols=128  Identities=22%  Similarity=0.358  Sum_probs=101.4

Q ss_pred             HHHhhccccccccccChHHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCC
Q 018606           53 VYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAV  130 (353)
Q Consensus        53 ~yd~~a~~y~~~~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~  130 (353)
                      +|......|..........+..++..++++.+|||||||+|.++..  ..+..|+|+|+|+.+++.|+++ ++++.+|+.
T Consensus        13 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~d~~   91 (240)
T 3dli_A           13 YYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-FNVVKSDAI   91 (240)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT-SEEECSCHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh-cceeeccHH
Confidence            3444444444333333334445555677889999999999998642  3366899999999999999988 899999988


Q ss_pred             CC--CCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          131 NL--PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       131 ~l--~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .+  ++++++||+|++..+++|+++++ ...+++++.++|||||++++.++...
T Consensus        92 ~~~~~~~~~~fD~i~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~  144 (240)
T 3dli_A           92 EYLKSLPDKYLDGVMISHFVEHLDPER-LFELLSLCYSKMKYSSYIVIESPNPT  144 (240)
T ss_dssp             HHHHTSCTTCBSEEEEESCGGGSCGGG-HHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred             HHhhhcCCCCeeEEEECCchhhCCcHH-HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            75  78889999999999999998543 68999999999999999999988744

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.71  E-value=5.3e-17  Score=152.16  Aligned_cols=101  Identities=14%  Similarity=0.172  Sum_probs=84.8

Q ss_pred             CCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCCccEEEec-hh
Q 018606           81 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISI-AV  147 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l~~~~~~fD~Vi~~-~v  147 (353)
                      ++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++          +++++++|+..+++ +++||+|++. .+
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~  160 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGS  160 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHH
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcc
Confidence            345999999999998642  4477999999999999999875          37899999999988 7899999876 55


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ++|+. .+.+..+|+++.++|||||+|++.++....
T Consensus       161 ~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  195 (299)
T 3g2m_A          161 INELD-EADRRGLYASVREHLEPGGKFLLSLAMSEA  195 (299)
T ss_dssp             HTTSC-HHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred             cccCC-HHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence            66655 444789999999999999999999988654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.71  E-value=2.9e-17  Score=150.02  Aligned_cols=97  Identities=20%  Similarity=0.334  Sum_probs=87.6

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      .+.++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++      ++.++.+|+..+++++++||+|++..++|
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  115 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH  115 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence            467789999999999998642  3467999999999999999886      58899999999998889999999999999


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      |+++   +..++.++.++|||||.+++.
T Consensus       116 ~~~~---~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          116 LVPD---WPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             GCTT---HHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcCC---HHHHHHHHHHHCCCCcEEEEE
Confidence            9987   678999999999999999988

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.70  E-value=6e-17  Score=138.67  Aligned_cols=96  Identities=21%  Similarity=0.313  Sum_probs=84.4

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE  154 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~  154 (353)
                      +.++.+|||||||+|.++..  ..+..++|+|+++.+++.|+++  ++++..+|   +++++++||+|++..+++|+.+ 
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~-   90 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMDD-   90 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCSC-
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcccC-
Confidence            46778999999999998642  2334999999999999999987  78999888   6777899999999999999987 


Q ss_pred             hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          155 SRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       155 e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                        +..+++++.++|||||++++..+.
T Consensus        91 --~~~~l~~~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           91 --KQHVISEVKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             --HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             --HHHHHHHHHHhcCCCCEEEEEEcC
Confidence              688999999999999999998754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.70  E-value=2.1e-16  Score=140.66  Aligned_cols=130  Identities=16%  Similarity=0.133  Sum_probs=98.6

Q ss_pred             HHHHHHHHHhhcccccccc----cc-----ChHHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHH
Q 018606           47 KKYVHRVYDAIAPHFSSTR----FA-----KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIK  115 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~~----~~-----~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~  115 (353)
                      .+.+.++|+..+..|+...    ..     ....+...+.. .++.+|||||||+|.++..  ..+..|+|+|+|+.|++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~   88 (227)
T 3e8s_A           10 EDALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILG-RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVD   88 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHH-TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhc-CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            3456778887777775421    11     11233344433 3458999999999998642  44779999999999999


Q ss_pred             HHHHc-CCeEEEeeCCCC---CCCC-CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          116 ICVDR-GHEVLVADAVNL---PYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       116 ~a~~~-~i~~~~~D~~~l---~~~~-~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .|+++ ++.+..+|+..+   ++.. .+||+|++..+++ ..+   +..+++++.++|||||++++.++..
T Consensus        89 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~---~~~~l~~~~~~L~pgG~l~~~~~~~  155 (227)
T 3e8s_A           89 AARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQD---IIELLSAMRTLLVPGGALVIQTLHP  155 (227)
T ss_dssp             HHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSC---CHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             HHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-hhh---HHHHHHHHHHHhCCCeEEEEEecCc
Confidence            99998 678889888776   5444 4599999999999 555   5789999999999999999998764

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.69  E-value=8.6e-17  Score=142.03  Aligned_cols=112  Identities=22%  Similarity=0.298  Sum_probs=95.6

Q ss_pred             HHHHHHHhCCCCCCEEEEECCcccccc-c--cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCcc
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYL-G--LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGD  140 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~-~--~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD  140 (353)
                      ..+..++..+.++.+|||+|||+|.++ .  ..++..|+|+|+|+.|++.|+++      ++.++++|+..+++++++||
T Consensus        12 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD   91 (209)
T 2p8j_A           12 YRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMS   91 (209)
T ss_dssp             HHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEE
T ss_pred             HHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCcee
Confidence            345555666778899999999999873 2  25677999999999999999875      58999999999998889999


Q ss_pred             EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +|++..+++|++ .+.+..+++++.++|||||++++.++...
T Consensus        92 ~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  132 (209)
T 2p8j_A           92 FVYSYGTIFHMR-KNDVKEAIDEIKRVLKPGGLACINFLTTK  132 (209)
T ss_dssp             EEEECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             EEEEcChHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence            999999999996 33478999999999999999999988643

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.69  E-value=9.7e-17  Score=147.72  Aligned_cols=101  Identities=22%  Similarity=0.329  Sum_probs=88.9

Q ss_pred             HhCCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606           76 LNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      +..+.++.+|||||||+|.++.   ..++..|+|+|+|+.+++.|+++        +++++++|+..+++++++||+|++
T Consensus        41 l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~  120 (267)
T 3kkz_A           41 IDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWS  120 (267)
T ss_dssp             CCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEE
T ss_pred             cccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEE
Confidence            3345688999999999999754   24567999999999999999876        388999999999988899999999


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ..+++|+ +   +..+++++.++|||||++++.++.
T Consensus       121 ~~~~~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          121 EGAIYNI-G---FERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             SSCGGGT-C---HHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             cCCceec-C---HHHHHHHHHHHcCCCCEEEEEEee
Confidence            9999999 5   678999999999999999999764

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.69  E-value=8.5e-17  Score=143.08  Aligned_cols=104  Identities=18%  Similarity=0.207  Sum_probs=90.2

Q ss_pred             hCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           77 NSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      ....++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++     +++++++|+..++ ++++||+|++..+++
T Consensus        47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~  125 (216)
T 3ofk_A           47 LSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLY  125 (216)
T ss_dssp             TTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGG
T ss_pred             cccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHH
Confidence            3455678999999999997642  3356999999999999999987     4789999999988 578999999999999


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      |+.+.+....+|.++.++|||||.+++.++..
T Consensus       126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             GSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             hCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            99986666789999999999999999988653

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.69  E-value=8.1e-17  Score=150.39  Aligned_cols=102  Identities=22%  Similarity=0.164  Sum_probs=90.5

Q ss_pred             CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.++.+|||||||+|.++..   ..+..|+|+|+|+.|++.|+++        +++++.+|+..+|+++++||+|++..
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  158 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  158 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence            567889999999999997642   2256999999999999999875        47899999999999899999999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +++|+++   +..+|+++.++|||||++++.++...
T Consensus       159 ~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~  191 (297)
T 2o57_A          159 AFLHSPD---KLKVFQECARVLKPRGVMAITDPMKE  191 (297)
T ss_dssp             CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             hhhhcCC---HHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            9999998   68999999999999999999987543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.68  E-value=1.3e-16  Score=146.15  Aligned_cols=110  Identities=21%  Similarity=0.268  Sum_probs=92.0

Q ss_pred             ChHHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCC
Q 018606           68 KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDF  138 (353)
Q Consensus        68 ~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~  138 (353)
                      .+..+...+ .+.++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++       ++.++++|+..+|+++++
T Consensus        25 ~~~~l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~  103 (260)
T 1vl5_A           25 DLAKLMQIA-ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER  103 (260)
T ss_dssp             CHHHHHHHH-TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred             HHHHHHHHh-CCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCC
Confidence            344555555 345788999999999997542  2335999999999999999875       478999999999999999


Q ss_pred             ccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          139 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       139 fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ||+|++..+++|+++   +..+|.++.|+|||||++++..+..
T Consensus       104 fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~~~~~~~  143 (260)
T 1vl5_A          104 FHIVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLVDNSA  143 (260)
T ss_dssp             EEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             EEEEEEhhhhHhcCC---HHHHHHHHHHHcCCCCEEEEEEcCC
Confidence            999999999999998   6789999999999999999986543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.68  E-value=1.9e-16  Score=139.91  Aligned_cols=137  Identities=18%  Similarity=0.191  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHhhccccccccccChHHHHHHHh-CCCCCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHHc-
Q 018606           46 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR-  120 (353)
Q Consensus        46 e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~-~l~~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~~-  120 (353)
                      +.+++.++|...........+..+..+..++. .+.++.+|||||||+|.++..  ..+. .++|+|+|+.+++.|+++ 
T Consensus         6 ~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~   85 (215)
T 2pxx_A            6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACY   85 (215)
T ss_dssp             CHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHT
T ss_pred             chhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhc
Confidence            35667777765543222233445566666665 457888999999999997542  2233 899999999999999986 


Q ss_pred             ----CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC------------hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          121 ----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST------------ESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       121 ----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~------------~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                          ++.++++|+..+++++++||+|++..+++|+..            .+....+|.++.++|||||++++.++...
T Consensus        86 ~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  163 (215)
T 2pxx_A           86 AHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP  163 (215)
T ss_dssp             TTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred             ccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence                589999999999988899999999999988761            23368899999999999999999998754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.68  E-value=2.1e-16  Score=144.44  Aligned_cols=100  Identities=18%  Similarity=0.200  Sum_probs=82.9

Q ss_pred             CCCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHHc----C-------------------------------
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR----G-------------------------------  121 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~~----~-------------------------------  121 (353)
                      .++.+|||||||+|.++..  ..+. .|+|+|+|+.|++.|+++    +                               
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            4668999999999998653  3344 999999999999999875    2                               


Q ss_pred             -C-eEEEeeCCCCC-CCC---CCccEEEechhhhhcCCh-hHHHHHHHHHHhccccCcEEEEEEc
Q 018606          122 -H-EVLVADAVNLP-YRS---DFGDAAISIAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       122 -i-~~~~~D~~~l~-~~~---~~fD~Vi~~~vl~h~~~~-e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                       + .++.+|+...+ +.+   ++||+|++..+++|+... ..+..+|+++.++|||||++++..+
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence             6 88999998864 355   899999999999976542 3378999999999999999999874

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.67  E-value=4.6e-17  Score=151.30  Aligned_cols=129  Identities=21%  Similarity=0.333  Sum_probs=99.4

Q ss_pred             HHHHHhhccccccccc----------cChHHHHHHHhCCC-CCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHH
Q 018606           51 HRVYDAIAPHFSSTRF----------AKWPKVATFLNSLP-SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKIC  117 (353)
Q Consensus        51 ~~~yd~~a~~y~~~~~----------~~~~~~~~~l~~l~-~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a  117 (353)
                      ...|+.++..|+...+          ..|..+..++..+. ++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|
T Consensus        27 ~~~fd~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a  106 (285)
T 4htf_A           27 DRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRA  106 (285)
T ss_dssp             -----CHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             ccchhhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            3466666666654322          22333445555443 457999999999997642  3378999999999999999


Q ss_pred             HHc--------CCeEEEeeCCCCC-CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          118 VDR--------GHEVLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       118 ~~~--------~i~~~~~D~~~l~-~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +++        +++++++|+..++ +.+++||+|++..+++|+++   +..+|+++.++|||||++++.++...
T Consensus       107 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~  177 (285)
T 4htf_A          107 KQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVAD---PRSVLQTLWSVLRPGGVLSLMFYNAH  177 (285)
T ss_dssp             HHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEEBHH
T ss_pred             HHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhcccC---HHHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            985        4679999999988 77899999999999999988   67899999999999999999988754

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.67  E-value=1.2e-16  Score=155.35  Aligned_cols=101  Identities=22%  Similarity=0.280  Sum_probs=89.2

Q ss_pred             CCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc---------------CCeEEEeeCCCC------
Q 018606           79 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR---------------GHEVLVADAVNL------  132 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~---------------~i~~~~~D~~~l------  132 (353)
                      +.++.+|||||||+|.++.    . .++..|+|+|+|+.|++.|+++               +++++++|+..+      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            4578899999999998653    2 3678999999999999999874               578999999987      


Q ss_pred             CCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          133 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       133 ~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ++++++||+|++..+++|+++   +..+|+++.++|||||+|++..+...
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~  207 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTN---KLALFKEIHRVLRDGGELYFSDVYAD  207 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             CCCCCCEEEEEEccchhcCCC---HHHHHHHHHHHcCCCCEEEEEEeccc
Confidence            888999999999999999988   68999999999999999999876544

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.67  E-value=1.3e-16  Score=146.92  Aligned_cols=102  Identities=32%  Similarity=0.473  Sum_probs=89.9

Q ss_pred             CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.++.+|||||||+|.++..   ..+..|+|+|+|+.+++.|+++        ++.++.+|+..+|+++++||+|++..
T Consensus        58 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  137 (273)
T 3bus_A           58 DVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALE  137 (273)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEec
Confidence            356789999999999997542   2368999999999999999876        47899999999999889999999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +++|+++   +..+|+++.++|||||++++.++...
T Consensus       138 ~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~~~~  170 (273)
T 3bus_A          138 SLHHMPD---RGRALREMARVLRPGGTVAIADFVLL  170 (273)
T ss_dssp             CTTTSSC---HHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred             hhhhCCC---HHHHHHHHHHHcCCCeEEEEEEeecc
Confidence            9999988   67899999999999999999987643

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.67  E-value=3e-16  Score=141.57  Aligned_cols=134  Identities=15%  Similarity=0.239  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhhccccccccccChHHHHHHHhCC-CCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-
Q 018606           45 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL-PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-  120 (353)
Q Consensus        45 ~e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l-~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-  120 (353)
                      ++.+++.+.|......|..  ....+.+..++... .++.+|||||||+|.++.  ..++..|+|+|+|+.+++.|+++ 
T Consensus        31 ~~~~~w~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~  108 (235)
T 3lcc_A           31 VEEGGWEKCWEEEITPWDQ--GRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETY  108 (235)
T ss_dssp             HHHHHHHHHHHTTCCTTCC--SSCCHHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHhcCCCCccc--CCCCHHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHh
Confidence            3455666777664444432  22334555555432 234599999999999764  35678999999999999999886 


Q ss_pred             -------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          121 -------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       121 -------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                             +++++++|+..++. +++||+|++..+++|++... +..+++++.++|||||++++..+...
T Consensus       109 ~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~  175 (235)
T 3lcc_A          109 GSSPKAEYFSFVKEDVFTWRP-TELFDLIFDYVFFCAIEPEM-RPAWAKSMYELLKPDGELITLMYPIT  175 (235)
T ss_dssp             TTSGGGGGEEEECCCTTTCCC-SSCEEEEEEESSTTTSCGGG-HHHHHHHHHHHEEEEEEEEEEECCCS
T ss_pred             hccCCCcceEEEECchhcCCC-CCCeeEEEEChhhhcCCHHH-HHHHHHHHHHHCCCCcEEEEEEeccc
Confidence                   27899999999874 56999999999999998433 78999999999999999999888754

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.67  E-value=1.8e-16  Score=147.44  Aligned_cols=135  Identities=22%  Similarity=0.183  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhhcccccccccc----ChHH----HHHHH--hCCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHH
Q 018606           47 KKYVHRVYDAIAPHFSSTRFA----KWPK----VATFL--NSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSL  113 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~~~~----~~~~----~~~~l--~~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~  113 (353)
                      .+.+.++|+..+..|...+..    ....    +...+  ..+.++.+|||||||+|.++..   .+...|+|+|+|+.|
T Consensus        20 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~   99 (298)
T 1ri5_A           20 KEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVS   99 (298)
T ss_dssp             ---------------------CCSHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHH
T ss_pred             HHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHH
Confidence            456778888887766543321    1111    11111  2357889999999999987542   334599999999999


Q ss_pred             HHHHHHc--------CCeEEEeeCCCCCC-CCCCccEEEechhhhhc-CChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          114 IKICVDR--------GHEVLVADAVNLPY-RSDFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       114 l~~a~~~--------~i~~~~~D~~~l~~-~~~~fD~Vi~~~vl~h~-~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ++.|+++        ++.++++|+..+++ .+++||+|++..++||+ ...+.+..+|+++.++|||||++++.++..
T Consensus       100 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          100 INDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             HHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             HHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            9999886        26899999999887 57899999999999984 444457899999999999999999998764

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.66  E-value=2.6e-16  Score=141.97  Aligned_cols=110  Identities=22%  Similarity=0.334  Sum_probs=92.8

Q ss_pred             cChHHHHHHHhCCCCCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCCc
Q 018606           67 AKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFG  139 (353)
Q Consensus        67 ~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~~f  139 (353)
                      ..|..+..++. ..++.+|||||||+|.++..  ..+. .++|+|+|+.|++.|+++    +++++.+|+..+++++++|
T Consensus        30 ~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f  108 (243)
T 3bkw_A           30 AEWPALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSF  108 (243)
T ss_dssp             TTHHHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCE
T ss_pred             HhHHHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCc
Confidence            34445555543 44678999999999997542  2345 999999999999999987    4789999999998888999


Q ss_pred             cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          140 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       140 D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      |+|++..+++|+.+   +..+|+++.++|+|||++++.++.
T Consensus       109 D~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          109 DLAYSSLALHYVED---VARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             EEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEEeccccccch---HHHHHHHHHHhcCcCcEEEEEeCC
Confidence            99999999999987   689999999999999999998864

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.66  E-value=2.6e-16  Score=143.48  Aligned_cols=120  Identities=16%  Similarity=0.184  Sum_probs=96.9

Q ss_pred             ccccccccccChHHHHHHHhC--CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeC
Q 018606           58 APHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADA  129 (353)
Q Consensus        58 a~~y~~~~~~~~~~~~~~l~~--l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~  129 (353)
                      +..|+............++..  +.++.+|||||||+|.++.    ..++..++|+|+|+.|++.|+++  ++.++.+|+
T Consensus         8 ~~~y~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~   87 (259)
T 2p35_A            8 AQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADL   87 (259)
T ss_dssp             CGGGBCCCCGGGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECCh
Confidence            344544332223333444543  3567899999999999754    24578999999999999999987  789999999


Q ss_pred             CCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          130 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       130 ~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ..++ ++++||+|++..+++|+++   +..+|+++.++|||||++++.++..
T Consensus        88 ~~~~-~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           88 ATWK-PAQKADLLYANAVFQWVPD---HLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             TTCC-CSSCEEEEEEESCGGGSTT---HHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             hhcC-ccCCcCEEEEeCchhhCCC---HHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            9988 7889999999999999987   6889999999999999999998754

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.66  E-value=1.8e-16  Score=144.54  Aligned_cols=131  Identities=18%  Similarity=0.309  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHhhccccccccccChHHHHHHHhCCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-
Q 018606           45 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-  120 (353)
Q Consensus        45 ~e~~~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~-  120 (353)
                      ++.+.+.++|+....... ........+...+..++++.+|||||||+|.++..   ..+..|+|+|+|+.+++.|+++ 
T Consensus        11 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~   89 (257)
T 3f4k_A           11 FDFSFICNYFKLLKRQGP-GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENA   89 (257)
T ss_dssp             SCHHHHHHHHTTSSCSSS-CCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCccccCC-CCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence            344555666665433211 11111223334444567889999999999997542   2224999999999999999876 


Q ss_pred             -------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          121 -------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       121 -------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                             +++++++|+..+|+++++||+|++..+++|+ +   +..+++++.++|||||++++.+..
T Consensus        90 ~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~---~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A           90 VKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-G---FERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             HHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCCC-C---HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             HHcCCCCceEEEECChhhCCCCCCCEEEEEecChHhhc-C---HHHHHHHHHHHcCCCcEEEEEEee
Confidence                   2889999999999988999999999999999 4   678999999999999999999754

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.66  E-value=3.4e-16  Score=142.61  Aligned_cols=99  Identities=22%  Similarity=0.229  Sum_probs=86.7

Q ss_pred             CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.++.+|||||||+|.++..   ..+..|+|+|+|+.|++.|+++        +++++++|+..+++ +++||+|++..
T Consensus        33 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~  111 (256)
T 1nkv_A           33 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVG  111 (256)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEES
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECC
Confidence            467889999999999997542   2367999999999999999875        47899999999988 88999999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +++|+++   +..+|+++.++|||||++++....
T Consensus       112 ~~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A          112 ATWIAGG---FAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             CGGGTSS---SHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             ChHhcCC---HHHHHHHHHHHcCCCeEEEEecCc
Confidence            9999987   678999999999999999998643

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.66  E-value=5e-16  Score=142.60  Aligned_cols=100  Identities=27%  Similarity=0.370  Sum_probs=86.3

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHcCC-eEEEeeCCCCCCCCCCccEEEechhhhhc-CCh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGH-EVLVADAVNLPYRSDFGDAAISIAVLHHL-STE  154 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~~i-~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~-~~~  154 (353)
                      ++++.+|||||||+|.++..  ..+..++|+|+|+.|++.|+++.. .++++|+..+++++++||+|++..+++|+ .+ 
T Consensus        52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~-  130 (260)
T 2avn_A           52 LKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN-  130 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred             cCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence            35788999999999998642  446799999999999999998732 48999999999888999999999877776 55 


Q ss_pred             hHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          155 SRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       155 e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                        +..+|+++.++|||||++++.+++.
T Consensus       131 --~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          131 --KDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             --HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             --HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence              6899999999999999999998764

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.65  E-value=1.8e-16  Score=143.74  Aligned_cols=133  Identities=14%  Similarity=0.129  Sum_probs=100.3

Q ss_pred             HHHHHHHHhhcccccccc--ccChHH-----HHHHH----hC---CCCCCEEEEECCcccccccc---CCCcEEEEEeCC
Q 018606           48 KYVHRVYDAIAPHFSSTR--FAKWPK-----VATFL----NS---LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDIS  110 (353)
Q Consensus        48 ~~v~~~yd~~a~~y~~~~--~~~~~~-----~~~~l----~~---l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S  110 (353)
                      +...++|+..+..|+...  +..++.     ...++    ..   ..++.+|||||||+|.++..   .....|+|+|+|
T Consensus        32 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s  111 (241)
T 2ex4_A           32 SKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT  111 (241)
T ss_dssp             HHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESC
T ss_pred             HHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCC
Confidence            456677887777654321  111211     11222    22   23578999999999997642   224599999999


Q ss_pred             HHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          111 PSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       111 ~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +.|++.|+++       ++.++.+|+..+++++++||+|++..+++|++++. ...+|+++.++|+|||++++.++..
T Consensus       112 ~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          112 EDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQH-LAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             HHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             HHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHH-HHHHHHHHHHhcCCCeEEEEEEccC
Confidence            9999999986       26799999999988888999999999999998744 4689999999999999999987653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.5e-16  Score=149.14  Aligned_cols=97  Identities=19%  Similarity=0.249  Sum_probs=86.5

Q ss_pred             CCCCEEEEECCccccccc--c---CCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCC------CCc
Q 018606           80 PSGSLVLDAGCGNGKYLG--L---NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRS------DFG  139 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~--~---~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~~~~------~~f  139 (353)
                      .++.+|||||||+|.++.  .   .++..|+|+|+|+.|++.|+++         +++++++|+..+++.+      ++|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            578899999999999753  1   4788999999999999999875         6789999999998877      899


Q ss_pred             cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          140 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       140 D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      |+|++..++||+ +   +..+++++.++|||||.|++..+.
T Consensus       115 D~V~~~~~l~~~-~---~~~~l~~~~~~LkpgG~l~i~~~~  151 (299)
T 3g5t_A          115 DMITAVECAHWF-D---FEKFQRSAYANLRKDGTIAIWGYA  151 (299)
T ss_dssp             EEEEEESCGGGS-C---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEeHhhHHHHh-C---HHHHHHHHHHhcCCCcEEEEEecC
Confidence            999999999999 6   789999999999999999996654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.65  E-value=1.8e-16  Score=144.58  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=86.9

Q ss_pred             CCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           81 SGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      ++.+|||||||+|.++..  ..+. .|+|+|+|+.|++.|+++    ++.++++|+..+++++++||+|++..+++|+.+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  123 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS  123 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhh
Confidence            678999999999997642  2233 999999999999999987    579999999999998899999999999999987


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                         +..+|+++.++|||||++++.+..
T Consensus       124 ---~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          124 ---FDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             ---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---HHHHHHHHHHHcCCCcEEEEEeCC
Confidence               789999999999999999998765

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.65  E-value=6e-16  Score=140.30  Aligned_cols=102  Identities=23%  Similarity=0.260  Sum_probs=89.5

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .+.++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++       ++.++++|+..+++++++||+|++..++
T Consensus        18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l   97 (239)
T 1xxl_A           18 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA   97 (239)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCch
Confidence            567889999999999997542  3345999999999999998875       4789999999999988999999999999


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +|+.+   +..+|.++.++|||||++++..+...
T Consensus        98 ~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~  128 (239)
T 1xxl_A           98 HHFSD---VRKAVREVARVLKQDGRFLLVDHYAP  128 (239)
T ss_dssp             GGCSC---HHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             hhccC---HHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence            99988   67899999999999999999876543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.65  E-value=3.1e-16  Score=146.05  Aligned_cols=104  Identities=22%  Similarity=0.298  Sum_probs=89.2

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCC---CCCCCccEE
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP---YRSDFGDAA  142 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~---~~~~~fD~V  142 (353)
                      ..++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++           ++.+..+|+..++   +++++||+|
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V  134 (293)
T 3thr_A           55 QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  134 (293)
T ss_dssp             HTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence            34678999999999997642  3466999999999999999763           5788999999887   788999999


Q ss_pred             Eec-hhhhhcCC----hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          143 ISI-AVLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       143 i~~-~vl~h~~~----~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ++. .+++|+.+    .+.+..+|+++.++|||||++++.+++.+
T Consensus       135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  179 (293)
T 3thr_A          135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD  179 (293)
T ss_dssp             EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHH
Confidence            998 89999998    44478999999999999999999987643

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.63  E-value=6.7e-16  Score=143.11  Aligned_cols=107  Identities=24%  Similarity=0.337  Sum_probs=92.7

Q ss_pred             HHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+...+ .+.++.+|||||||+|.++..  .++..|+|+|+|+.|++.|+++  ++.+..+|+..+++ +++||+|++..
T Consensus        48 ~l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~  125 (279)
T 3ccf_A           48 DLLQLL-NPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNA  125 (279)
T ss_dssp             HHHHHH-CCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEES
T ss_pred             HHHHHh-CCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcc
Confidence            344444 356788999999999997642  3778999999999999999987  79999999999987 68999999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +++|+.+   +..+|+++.++|||||++++.++...
T Consensus       126 ~l~~~~d---~~~~l~~~~~~LkpgG~l~~~~~~~~  158 (279)
T 3ccf_A          126 MLHWVKE---PEAAIASIHQALKSGGRFVAEFGGKG  158 (279)
T ss_dssp             CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             hhhhCcC---HHHHHHHHHHhcCCCcEEEEEecCCc
Confidence            9999998   67899999999999999999987643

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.63  E-value=5.5e-16  Score=143.07  Aligned_cols=101  Identities=30%  Similarity=0.450  Sum_probs=90.5

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.++.+|||||||+|.++.    ..++..++|+|+|+.+++.|+++       +++++.+|+..+++++++||+|++..
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  113 (276)
T 3mgg_A           34 VYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCF  113 (276)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEES
T ss_pred             cCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEec
Confidence            45788999999999999754    36688999999999999999876       57899999999999899999999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +++|+++   +..+++++.++|||||.+++..+..
T Consensus       114 ~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          114 VLEHLQS---PEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             hhhhcCC---HHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            9999998   5789999999999999999987653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.63  E-value=4.1e-16  Score=142.47  Aligned_cols=104  Identities=22%  Similarity=0.244  Sum_probs=90.5

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      +.++.+|||||||+|.++..   ..+..|+|+|+|+.|++.|+++     +++++++|+..+++++++||+|++..+++|
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  132 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILA  132 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGG
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHh
Confidence            46788999999999997642   1267999999999999999987     578999999999998999999999999999


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ++..+ +..+|+++.++|||||++++.++....
T Consensus       133 ~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~~~  164 (266)
T 3ujc_A          133 LSLEN-KNKLFQKCYKWLKPTGTLLITDYCATE  164 (266)
T ss_dssp             SCHHH-HHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred             cChHH-HHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            95333 789999999999999999999876443

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=135.83  Aligned_cols=97  Identities=24%  Similarity=0.313  Sum_probs=83.4

Q ss_pred             HHHHHHhCCCCCCEEEEECCccccccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      .+...+....++.+|||||||+|.++... ...++|+|+|+.        ++.++.+|+..+++++++||+|++..++|+
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l-~~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  127 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSI-RNPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG  127 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHC-CSCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEESCCCS
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHh-hccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEehhccc
Confidence            46666666678889999999999987644 378999999987        688999999999988899999999999975


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                       .+   +..+|.++.++|+|||.+++..+.
T Consensus       128 -~~---~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          128 -TN---IRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             -SC---HHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             -cC---HHHHHHHHHHhCCCCeEEEEEEcC
Confidence             54   689999999999999999998643

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.63  E-value=5.6e-16  Score=140.89  Aligned_cols=131  Identities=11%  Similarity=0.050  Sum_probs=100.1

Q ss_pred             HHHHHHHhhcccccccc--c-----cChHHHHHHHhCC--CCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHH
Q 018606           49 YVHRVYDAIAPHFSSTR--F-----AKWPKVATFLNSL--PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKI  116 (353)
Q Consensus        49 ~v~~~yd~~a~~y~~~~--~-----~~~~~~~~~l~~l--~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~  116 (353)
                      ...++|+..+..|+...  +     .....+..++..+  .++.+|||||||+|.++..   .....|+|+|+|+.|++.
T Consensus        52 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~  131 (254)
T 1xtp_A           52 KALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEE  131 (254)
T ss_dssp             HHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHH
T ss_pred             hhhhHHhcCCccccceecCcCccCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHH
Confidence            45567777665543311  1     1112223444443  4678999999999997642   114579999999999999


Q ss_pred             HHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          117 CVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       117 a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      |+++     +++++++|+..+++++++||+|++..+++|+++.+ +..+|+++.++|||||++++.++.
T Consensus       132 a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~  199 (254)
T 1xtp_A          132 AKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDAD-FVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             HHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             HHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHH-HHHHHHHHHHhcCCCeEEEEEecC
Confidence            9987     47899999999998889999999999999997533 789999999999999999999853

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.63  E-value=9.3e-16  Score=136.67  Aligned_cols=99  Identities=22%  Similarity=0.247  Sum_probs=84.9

Q ss_pred             CCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      .++.+|||||||+|.++..    .+...++|+|+|+.|++.|+++            +++++++|+...+...++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            4568999999999998642    4557999999999999999987            58999999988887778999999


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      +..+++|+.++. ...+++++.++|||||.++++..
T Consensus       108 ~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A          108 VIEVIEHLDLSR-LGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             EESCGGGCCHHH-HHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             eHHHHHcCCHHH-HHHHHHHHHHHcCCCEEEEEccC
Confidence            999999997543 57999999999999997666643

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.63  E-value=1e-15  Score=141.30  Aligned_cols=128  Identities=14%  Similarity=0.147  Sum_probs=94.7

Q ss_pred             HHHHHhhccccccccc----cChHHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHcC-Ce
Q 018606           51 HRVYDAIAPHFSSTRF----AKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRG-HE  123 (353)
Q Consensus        51 ~~~yd~~a~~y~~~~~----~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~~-i~  123 (353)
                      .+.|+.++..|.....    ..|.........+.++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++. ..
T Consensus        11 a~~wd~~a~~f~~~~~~~~~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           11 AEAWELIGNQFWTIGRVAARPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             HHHHHTTTTHHHHTSCGGGSCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS
T ss_pred             hhHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc
Confidence            3567777777654333    22332222223567889999999999997542  45779999999999999999872 22


Q ss_pred             EEEeeCCCCCC-----CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          124 VLVADAVNLPY-----RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       124 ~~~~D~~~l~~-----~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++.+++..++.     .+++||+|++..++||+...+ ...++.++.++| |||++++++..
T Consensus        91 ~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~-~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A           91 CVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEE-ARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             CCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHH-HHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             cceeeeeecccccccccCCCccEEEEhhhhHhCCHHH-HHHHHHHHHHhC-cCcEEEEEecc
Confidence            45566655543     257899999999999997554 678999999999 99999998753

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.62  E-value=1.7e-15  Score=132.33  Aligned_cols=109  Identities=23%  Similarity=0.204  Sum_probs=90.1

Q ss_pred             hHHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCc
Q 018606           69 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFG  139 (353)
Q Consensus        69 ~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~f  139 (353)
                      +..+...+.. .++.+|||||||+|.++..  ..+..++|+|+|+.+++.|+++       +++++.+|+..+++ +++|
T Consensus        21 ~~~l~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~   98 (199)
T 2xvm_A           21 HSEVLEAVKV-VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQY   98 (199)
T ss_dssp             CHHHHHHTTT-SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCE
T ss_pred             cHHHHHHhhc-cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCc
Confidence            3455555544 4567999999999997542  2367999999999999999875       57899999999888 8899


Q ss_pred             cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          140 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       140 D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      |+|++..+++|++..+ +..+++++.++|+|||.+++..+.
T Consensus        99 D~v~~~~~l~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~~  138 (199)
T 2xvm_A           99 DFILSTVVLMFLEAKT-IPGLIANMQRCTKPGGYNLIVAAM  138 (199)
T ss_dssp             EEEEEESCGGGSCGGG-HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             eEEEEcchhhhCCHHH-HHHHHHHHHHhcCCCeEEEEEEee
Confidence            9999999999997433 789999999999999998877654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.62  E-value=1e-15  Score=136.50  Aligned_cols=98  Identities=26%  Similarity=0.320  Sum_probs=84.2

Q ss_pred             CCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      .++.+|||||||+|.++..    .+...++|+|+|+.|++.|+++            +++++.+|+..+++.+++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            4568999999999997642    3447999999999999999986            68999999988888789999999


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +..+++|+++++ ...+++++.++|||||.++++.
T Consensus       108 ~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A          108 VIEVIEHLDENR-LQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             EESCGGGCCHHH-HHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EHHHHHhCCHHH-HHHHHHHHHHhhCCCEEEEEcc
Confidence            999999997643 5789999999999999655544

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.62  E-value=3e-16  Score=146.76  Aligned_cols=133  Identities=12%  Similarity=0.067  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhhcccccccc-c--cChHHHHHHHhCC---CCCCEEEEECCcccccc--------ccCCCcEE--EEEeC
Q 018606           46 EKKYVHRVYDAIAPHFSSTR-F--AKWPKVATFLNSL---PSGSLVLDAGCGNGKYL--------GLNPDCFF--VGCDI  109 (353)
Q Consensus        46 e~~~v~~~yd~~a~~y~~~~-~--~~~~~~~~~l~~l---~~~~~VLDvGCG~G~~~--------~~~~~~~v--~gvD~  109 (353)
                      +..++.+.|+.....+.... .  ..+..+..++..+   .++.+|||||||+|.++        ...++..+  +|+|+
T Consensus        11 d~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~   90 (292)
T 2aot_A           11 DHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEP   90 (292)
T ss_dssp             CHHHHHHHHHHHHTTBSHHHHHHHHHHHTHHHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECS
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHhchhHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeC
Confidence            44556667776665543211 0  0111223333333   45679999999999642        12356644  99999


Q ss_pred             CHHHHHHHHHc--------CCeE--EEeeCCCCC------CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcE
Q 018606          110 SPSLIKICVDR--------GHEV--LVADAVNLP------YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSL  173 (353)
Q Consensus       110 S~~~l~~a~~~--------~i~~--~~~D~~~l~------~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~  173 (353)
                      |+.|++.|+++        ++.+  ..+++..++      +++++||+|++..++||+++   +..+|++++|+|||||+
T Consensus        91 S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~  167 (292)
T 2aot_A           91 SAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAK  167 (292)
T ss_dssp             CHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEE
T ss_pred             CHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecCC---HHHHHHHHHHHcCCCcE
Confidence            99999999875        2233  344444333      56789999999999999998   78899999999999999


Q ss_pred             EEEEEcCC
Q 018606          174 VLITVWAV  181 (353)
Q Consensus       174 lli~~~~~  181 (353)
                      +++...+.
T Consensus       168 l~i~~~~~  175 (292)
T 2aot_A          168 MLIIVVSG  175 (292)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEecC
Confidence            99997653

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.62  E-value=4.2e-16  Score=147.02  Aligned_cols=102  Identities=17%  Similarity=0.125  Sum_probs=82.1

Q ss_pred             CCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc----C---------CeEEEeeC------CCC--CCC
Q 018606           80 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR----G---------HEVLVADA------VNL--PYR  135 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~----~---------i~~~~~D~------~~l--~~~  135 (353)
                      +++.+|||||||+|..+.   ...+..|+|+|+|+.|++.|+++    +         +++.+.|+      ..+  +++
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            467899999999997543   24457999999999999999986    3         34778877      222  355


Q ss_pred             CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          136 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       136 ~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +++||+|+|..++||+.+.+....+|+++.++|||||++++.+++.
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            7899999999999987443346799999999999999999998763

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.61  E-value=1.2e-15  Score=143.10  Aligned_cols=103  Identities=17%  Similarity=0.279  Sum_probs=87.9

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      +.++.+|||||||+|.++..   ..+..|+|+|+|+.+++.|+++        +++++.+|+..+   +++||+|++..+
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~  146 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGA  146 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESC
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcch
Confidence            57889999999999997642   2248999999999999999886        478999999876   789999999999


Q ss_pred             hhhcCCh------hHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          148 LHHLSTE------SRRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       148 l~h~~~~------e~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      ++|++++      +....+++++.++|||||++++.++.....
T Consensus       147 ~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  189 (302)
T 3hem_A          147 FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDK  189 (302)
T ss_dssp             GGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCH
T ss_pred             HHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCc
Confidence            9999764      346799999999999999999998876543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.61  E-value=7e-16  Score=145.54  Aligned_cols=101  Identities=16%  Similarity=0.180  Sum_probs=89.3

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      +.++.+|||||||+|.++..   ..+..|+|+|+|+.|++.|+++        +++++.+|+..+++++++||+|++..+
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  194 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES  194 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence            56789999999999997642   2267999999999999999885        478999999999998899999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ++|+ +   +..+|+++.++|||||++++.++....
T Consensus       195 l~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~  226 (312)
T 3vc1_A          195 TMYV-D---LHDLFSEHSRFLKVGGRYVTITGCWNP  226 (312)
T ss_dssp             GGGS-C---HHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             hhhC-C---HHHHHHHHHHHcCCCcEEEEEEccccc
Confidence            9999 4   689999999999999999999876554

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.61  E-value=1.2e-15  Score=142.23  Aligned_cols=99  Identities=21%  Similarity=0.218  Sum_probs=79.7

Q ss_pred             CCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc---------------------C--------------
Q 018606           80 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR---------------------G--------------  121 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~---------------------~--------------  121 (353)
                      .++.+|||||||+|.+...   .++..|+|+|+|+.|++.|+++                     +              
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            4678999999999995432   3467999999999999988772                     1              


Q ss_pred             --CeEEEeeCCC-CCC-----CCCCccEEEechhhhhcCCh-hHHHHHHHHHHhccccCcEEEEEE
Q 018606          122 --HEVLVADAVN-LPY-----RSDFGDAAISIAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       122 --i~~~~~D~~~-l~~-----~~~~fD~Vi~~~vl~h~~~~-e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                        ++++.+|+.. +|+     ++++||+|++..+|+|+... +.+..+|+++.|+|||||+|++..
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence              3466779987 664     34679999999999996542 237899999999999999999974

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.61  E-value=6.7e-16  Score=140.02  Aligned_cols=136  Identities=13%  Similarity=0.090  Sum_probs=100.9

Q ss_pred             HHHHHHHHHhhccccccc--cccCh----HHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHH
Q 018606           47 KKYVHRVYDAIAPHFSST--RFAKW----PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICV  118 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~--~~~~~----~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~  118 (353)
                      .+.+..+|+.........  ....+    ..+..++..+.++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+
T Consensus        16 ~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~   95 (245)
T 3ggd_A           16 ADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAA   95 (245)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTCCCGGGTHHHHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCccceecchhHHHHHHHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHH
Confidence            556667776644322211  11112    23444455677889999999999998642  22338999999999999999


Q ss_pred             Hc----CCeEEEeeCCCCCCCC-----CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          119 DR----GHEVLVADAVNLPYRS-----DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       119 ~~----~i~~~~~D~~~l~~~~-----~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ++    +++++++|+..++...     ..||+|++..++||++..+ +..+|+++.++|||||++++..+....
T Consensus        96 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~  168 (245)
T 3ggd_A           96 KENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEK-RELLGQSLRILLGKQGAMYLIELGTGC  168 (245)
T ss_dssp             HHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGG-HHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred             HhCcccCceEEECcccccccccccccccCccEEEEcchhhcCCHHH-HHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence            87    6899999999865432     2489999999999998433 789999999999999999999887543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.60  E-value=2.8e-15  Score=139.25  Aligned_cols=110  Identities=19%  Similarity=0.151  Sum_probs=91.2

Q ss_pred             hHHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCcc
Q 018606           69 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGD  140 (353)
Q Consensus        69 ~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD  140 (353)
                      ...+...+... ++.+|||||||+|.++..  ..+..|+|+|+|+.+++.|+++      +++++.+|+..+++ +++||
T Consensus       109 ~~~~~~~~~~~-~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD  186 (286)
T 3m70_A          109 HGDVVDAAKII-SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYD  186 (286)
T ss_dssp             CHHHHHHHHHS-CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEE
T ss_pred             HHHHHHHhhcc-CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCcc
Confidence            34455555444 678999999999997642  3467999999999999999886      57899999999887 78999


Q ss_pred             EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +|++..+++|+..+. ...+++++.++|+|||.+++.....
T Consensus       187 ~i~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~  226 (286)
T 3m70_A          187 FIVSTVVFMFLNRER-VPSIIKNMKEHTNVGGYNLIVAAMS  226 (286)
T ss_dssp             EEEECSSGGGSCGGG-HHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             EEEEccchhhCCHHH-HHHHHHHHHHhcCCCcEEEEEEecC
Confidence            999999999997654 6789999999999999988776543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.60  E-value=2.7e-15  Score=139.63  Aligned_cols=101  Identities=26%  Similarity=0.355  Sum_probs=88.7

Q ss_pred             HhCCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606           76 LNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      +..+.++.+|||||||+|.++.    ..+ +..|+|+|+|+.+++.|+++      +++++++|+..+++ +++||+|++
T Consensus        17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~   95 (284)
T 3gu3_A           17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAIC   95 (284)
T ss_dssp             TSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEE
T ss_pred             HhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCeeEEEE
Confidence            3356778999999999999753    234 58999999999999999886      57899999999988 469999999


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ..+++|+++   +..+++++.++|||||++++..+.
T Consensus        96 ~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           96 HAFLLHMTT---PETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ESCGGGCSS---HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CChhhcCCC---HHHHHHHHHHHcCCCCEEEEEecc
Confidence            999999998   679999999999999999999876

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.59  E-value=3.1e-15  Score=131.57  Aligned_cols=108  Identities=19%  Similarity=0.255  Sum_probs=89.0

Q ss_pred             HHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           72 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        72 ~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      +..++..++++ +|||||||+|.++..  ..+..|+|+|+|+.|++.|+++      ++.++.+|+..+++++++||+|+
T Consensus        21 l~~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~   99 (202)
T 2kw5_A           21 LVSVANQIPQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIV   99 (202)
T ss_dssp             HHHHHHHSCSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEE
T ss_pred             HHHHHHhCCCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEE
Confidence            44455556777 999999999997642  3467999999999999999876      57889999999988889999999


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +.  +.|+ ..+.+..++.++.++|+|||.+++.++....
T Consensus       100 ~~--~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  136 (202)
T 2kw5_A          100 SI--FCHL-PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQ  136 (202)
T ss_dssp             EE--CCCC-CHHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred             EE--hhcC-CHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence            95  3455 3344789999999999999999999987554

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.59  E-value=3.2e-15  Score=133.18  Aligned_cols=99  Identities=23%  Similarity=0.313  Sum_probs=87.6

Q ss_pred             CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC--CCCCCCCccEEEechhhhhcCChh
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN--LPYRSDFGDAAISIAVLHHLSTES  155 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~--l~~~~~~fD~Vi~~~vl~h~~~~e  155 (353)
                      .++.+|||||||+|.++..  ..+..++|+|+|+.+++.++++..++..+|+..  +++++++||+|++..+++|+.+  
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~--  108 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFD--  108 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSC--
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCC--
Confidence            5778999999999997542  225899999999999999999878999999987  6677889999999999999998  


Q ss_pred             HHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          156 RRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       156 ~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                       +..++.++.++|+|||.+++.++..
T Consensus       109 -~~~~l~~~~~~L~~gG~l~~~~~~~  133 (230)
T 3cc8_A          109 -PWAVIEKVKPYIKQNGVILASIPNV  133 (230)
T ss_dssp             -HHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred             -HHHHHHHHHHHcCCCCEEEEEeCCc
Confidence             6789999999999999999998664

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.58  E-value=1.2e-15  Score=149.64  Aligned_cols=99  Identities=13%  Similarity=0.213  Sum_probs=83.9

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEE-----eeCCCCCCCCCCccEEEechhhhhc
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLV-----ADAVNLPYRSDFGDAAISIAVLHHL  151 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~-----~D~~~l~~~~~~fD~Vi~~~vl~h~  151 (353)
                      +.++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++++....     .+...+++++++||+|++..+|+|+
T Consensus       105 ~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~  184 (416)
T 4e2x_A          105 TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHI  184 (416)
T ss_dssp             CSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhc
Confidence            45788999999999998753  4467999999999999999998766554     3334456667899999999999999


Q ss_pred             CChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          152 STESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       152 ~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++   +..+|+++.++|||||++++.++.
T Consensus       185 ~d---~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          185 PY---VQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             TT---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CC---HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            87   789999999999999999998765

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.58  E-value=4.5e-15  Score=135.01  Aligned_cols=99  Identities=18%  Similarity=0.280  Sum_probs=82.2

Q ss_pred             CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEech-hhhh
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA-VLHH  150 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~-vl~h  150 (353)
                      .++.+|||+|||+|.++..  ..+..|+|+|+|+.|++.|+++      ++.++++|+..++++ +.||+|++.. +++|
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~  118 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY  118 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence            4678999999999997642  3467999999999999999876      589999999998864 6899999874 5555


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +. .+....+++++.++|+|||.+++.+.+
T Consensus       119 ~~-~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          119 FD-EEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             SC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CC-HHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            54 444789999999999999999987643

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.58  E-value=1.1e-14  Score=135.45  Aligned_cols=109  Identities=23%  Similarity=0.259  Sum_probs=88.6

Q ss_pred             HHHHhCCCCCCEEEEECCcc---ccccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCC-------
Q 018606           73 ATFLNSLPSGSLVLDAGCGN---GKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP-------  133 (353)
Q Consensus        73 ~~~l~~l~~~~~VLDvGCG~---G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~-------  133 (353)
                      ...+.......+|||||||+   |.++.    ..++.+|+|+|+|+.|++.|+++     +++++.+|+...+       
T Consensus        69 ~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~  148 (274)
T 2qe6_A           69 VRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPD  148 (274)
T ss_dssp             HHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHH
T ss_pred             HHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccch
Confidence            33443233447999999999   97643    35789999999999999999986     5789999997631       


Q ss_pred             ----CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          134 ----YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       134 ----~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                          ++..+||+|++..+|||+++.+ +..+|+++.++|+|||+|++..+...
T Consensus       149 ~~~~~d~~~~d~v~~~~vlh~~~d~~-~~~~l~~~~~~L~pGG~l~i~~~~~~  200 (274)
T 2qe6_A          149 VRRMIDFSRPAAIMLVGMLHYLSPDV-VDRVVGAYRDALAPGSYLFMTSLVDT  200 (274)
T ss_dssp             HHHHCCTTSCCEEEETTTGGGSCTTT-HHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred             hhccCCCCCCEEEEEechhhhCCcHH-HHHHHHHHHHhCCCCcEEEEEEecCc
Confidence                2335899999999999999763 78999999999999999999998753

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.58  E-value=8.6e-15  Score=130.61  Aligned_cols=105  Identities=25%  Similarity=0.344  Sum_probs=87.3

Q ss_pred             HhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           76 LNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      +..++++.+|||||||+|.++..  ..+..++|+|+|+.+++.|+++      +++++.+|+..+++++++||+|++..+
T Consensus        33 ~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  112 (227)
T 1ve3_A           33 MKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDS  112 (227)
T ss_dssp             HHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred             HHhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCc
Confidence            34566788999999999997542  2334999999999999999875      589999999998888889999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +++....+ +..+++++.++|+|||++++..+..
T Consensus       113 ~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~~~  145 (227)
T 1ve3_A          113 IVHFEPLE-LNQVFKEVRRVLKPSGKFIMYFTDL  145 (227)
T ss_dssp             GGGCCHHH-HHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             hHhCCHHH-HHHHHHHHHHHcCCCcEEEEEecCh
Confidence            65554322 6889999999999999999997653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.57  E-value=4.1e-15  Score=138.10  Aligned_cols=101  Identities=22%  Similarity=0.275  Sum_probs=86.3

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      +.++.+|||||||+|.++..   ..+..|+|+|+|+.+++.|+++        +++++.+|+..+|   ++||+|++..+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~  138 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGA  138 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCc
Confidence            56788999999999997532   2356999999999999999886        5789999998776   78999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ++|++... +..+|+++.++|||||++++.++....
T Consensus       139 l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~  173 (287)
T 1kpg_A          139 FEHFGHER-YDAFFSLAHRLLPADGVMLLHTITGLH  173 (287)
T ss_dssp             GGGTCTTT-HHHHHHHHHHHSCTTCEEEEEEEEECC
T ss_pred             hhhcChHH-HHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence            99996433 789999999999999999999877554

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.56  E-value=1.4e-14  Score=125.62  Aligned_cols=102  Identities=25%  Similarity=0.358  Sum_probs=88.3

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEec-hhhhhcCC
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISI-AVLHHLST  153 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~-~vl~h~~~  153 (353)
                      ++++.+|||||||+|.++..  ..+..++|+|+|+.+++.++++  ++.++.+|+..++++++.||+|++. .+++|+..
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~  123 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAE  123 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCH
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcCh
Confidence            56788999999999997542  2367999999999999999987  6899999999988888899999998 68888864


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .. ...+|.++.++|+|||.+++.+...
T Consensus       124 ~~-~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          124 DG-REPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             HH-HHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             HH-HHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            33 6889999999999999999987653

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.56  E-value=2.2e-15  Score=141.13  Aligned_cols=100  Identities=18%  Similarity=0.227  Sum_probs=84.3

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------------------------------
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------------------------------  120 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------------------------------  120 (353)
                      .++.+|||||||+|.++.    ..++..|+|+|+|+.|++.|+++                                   
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            467899999999999753    25678999999999999999875                                   


Q ss_pred             ------------------------------CCeEEEeeCCCCC-----CCCCCccEEEechhhhhcC---ChhHHHHHHH
Q 018606          121 ------------------------------GHEVLVADAVNLP-----YRSDFGDAAISIAVLHHLS---TESRRKKAIE  162 (353)
Q Consensus       121 ------------------------------~i~~~~~D~~~l~-----~~~~~fD~Vi~~~vl~h~~---~~e~~~~~l~  162 (353)
                                                    +++|+++|+...+     +.+++||+|+|..+++|+.   ..+.+..+|+
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                          4778899987654     5678999999999998874   3444789999


Q ss_pred             HHHhccccCcEEEEEEc
Q 018606          163 ELVRVVKKGSLVLITVW  179 (353)
Q Consensus       163 el~rvLkpgG~lli~~~  179 (353)
                      ++.++|+|||+|++...
T Consensus       205 ~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             HHHHHEEEEEEEEEECC
T ss_pred             HHHHHhCCCcEEEEecC
Confidence            99999999999999753

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.56  E-value=1.1e-14  Score=137.22  Aligned_cols=103  Identities=22%  Similarity=0.212  Sum_probs=86.6

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCCCC----CC--
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVNLP----YR--  135 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------------~i~~~~~D~~~l~----~~--  135 (353)
                      ++++.+|||||||+|.++..   .+...++|+|+|+.|++.|+++              ++.++++|+..++    ++  
T Consensus        32 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           32 KKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             C--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             cCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            45778999999999997642   4567999999999999999875              3689999999876    53  


Q ss_pred             CCCccEEEechhhhhc-CChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          136 SDFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       136 ~~~fD~Vi~~~vl~h~-~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +++||+|++..++||+ .+.+.+..+|.++.++|||||.+++.++..
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            4589999999999998 665557899999999999999999998864

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.55  E-value=1.2e-14  Score=126.00  Aligned_cols=105  Identities=22%  Similarity=0.263  Sum_probs=79.0

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCCccEEEec-h
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAISI-A  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~-~~~~~fD~Vi~~-~  146 (353)
                      .+.++.+|||+|||+|.++..  ..+.+|+|+|+|+.|++.|+++       ++++++.|+..++ +.+++||+|++. .
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~   98 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG   98 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence            467889999999999997542  3378999999999999999876       4688888777754 447889999887 3


Q ss_pred             hhhh-----cCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          147 VLHH-----LSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       147 vl~h-----~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .+++     ....+....++.++.++|||||++++.+|...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  139 (185)
T 3mti_A           99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGH  139 (185)
T ss_dssp             -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC---
T ss_pred             CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCC
Confidence            3332     11233367889999999999999999988654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.53  E-value=1.7e-14  Score=136.10  Aligned_cols=101  Identities=19%  Similarity=0.291  Sum_probs=86.5

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      +.++.+|||||||+|.++..   ..+..|+|+|+|+.+++.|+++        +++++.+|+..++   ++||+|++..+
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~  164 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEA  164 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeCh
Confidence            46788999999999997542   2267999999999999999886        3789999998875   78999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ++|++... +..+++++.++|||||++++.++....
T Consensus       165 l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          165 FEHFGHEN-YDDFFKRCFNIMPADGRMTVQSSVSYH  199 (318)
T ss_dssp             GGGTCGGG-HHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             HHhcCHHH-HHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence            99996433 789999999999999999999887654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.53  E-value=3.3e-14  Score=133.04  Aligned_cols=97  Identities=13%  Similarity=0.175  Sum_probs=82.7

Q ss_pred             HhCCCCCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606           76 LNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      +..+.++.+|||||||+|.++    ...++++|+|+|+|+.|++.|+++       +++|+++|+..++  +++||+|++
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~  194 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMV  194 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEE
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEE
Confidence            457889999999999999754    235789999999999999999986       4789999999876  689999998


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .+.   ..+   ..++++++.|+|||||++++..+.
T Consensus       195 ~a~---~~d---~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          195 AAL---AEP---KRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             CTT---CSC---HHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CCC---ccC---HHHHHHHHHHHcCCCcEEEEEcCc
Confidence            665   344   678999999999999999998753

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.52  E-value=3.9e-14  Score=136.66  Aligned_cols=100  Identities=19%  Similarity=0.180  Sum_probs=85.7

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC--CCCCCCccEEEec
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL--PYRSDFGDAAISI  145 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l--~~~~~~fD~Vi~~  145 (353)
                      ....+|||||||+|.++.    ..|+.+++++|+ +.+++.|+++        +++++.+|+...  |++ +.||+|++.
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~  255 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS  255 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence            355799999999999764    368889999999 9999999875        479999999986  565 789999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .++|++++.+ ...+|++++++|||||+++|..+...
T Consensus       256 ~vlh~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~  291 (363)
T 3dp7_A          256 QFLDCFSEEE-VISILTRVAQSIGKDSKVYIMETLWD  291 (363)
T ss_dssp             SCSTTSCHHH-HHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred             chhhhCCHHH-HHHHHHHHHHhcCCCcEEEEEeeccC
Confidence            9999998754 57899999999999999999876543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.52  E-value=7.7e-15  Score=132.70  Aligned_cols=101  Identities=13%  Similarity=0.023  Sum_probs=80.3

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCC--CCCCCCccEEEe-ch
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL--PYRSDFGDAAIS-IA  146 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l--~~~~~~fD~Vi~-~~  146 (353)
                      ..++.+|||||||+|.++..   .....|+|+|+|+.|++.|+++      ++.++++|+..+  ++++++||+|++ ..
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            35778999999999997642   2334899999999999999986      378899999888  888899999999 44


Q ss_pred             hh--hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VL--HHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl--~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .+  +... ...+..+++++.|+|||||+|++..+.
T Consensus       138 ~~~~~~~~-~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          138 PLSEETWH-THQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CCBGGGTT-THHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             ccchhhhh-hhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            42  2222 233567899999999999999887644

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.49  E-value=8.5e-14  Score=133.22  Aligned_cols=99  Identities=19%  Similarity=0.295  Sum_probs=84.1

Q ss_pred             CCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC-CCCCCccEEEechhh
Q 018606           82 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP-YRSDFGDAAISIAVL  148 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~-~~~~~fD~Vi~~~vl  148 (353)
                      +.+|||||||+|.++.    ..++.+++++|+ +.+++.|+++        +++++.+|+...+ +..+.||+|++..++
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence            7899999999999753    367899999999 7899888875        4889999998876 134669999999999


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ||+++.+ ...+|+++.++|+|||+++|..+...
T Consensus       259 h~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~  291 (352)
T 3mcz_A          259 HYFDARE-AREVIGHAAGLVKPGGALLILTMTMN  291 (352)
T ss_dssp             GGSCHHH-HHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred             ccCCHHH-HHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            9998644 68999999999999999999876543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.49  E-value=9.7e-15  Score=132.62  Aligned_cols=96  Identities=14%  Similarity=0.028  Sum_probs=77.1

Q ss_pred             CCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCC--CCCCCCccEEEe----
Q 018606           80 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL--PYRSDFGDAAIS----  144 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l--~~~~~~fD~Vi~----  144 (353)
                      .+|.+|||||||+|..+..   .....++|||+|+.|++.|+++      ++.++.+|+..+  ++++++||.|+.    
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~  138 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  138 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence            6788999999999987542   3345899999999999999986      357788887653  477889999974    


Q ss_pred             -chhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          145 -IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       145 -~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                       ..+++|+.+   +..+++++.|+|||||+|++..
T Consensus       139 ~~~~~~~~~~---~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          139 LSEETWHTHQ---FNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CBGGGTTTHH---HHHHHHTHHHHEEEEEEEEECC
T ss_pred             cccchhhhcc---hhhhhhhhhheeCCCCEEEEEe
Confidence             455666665   7889999999999999987653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.48  E-value=6.8e-14  Score=145.25  Aligned_cols=100  Identities=19%  Similarity=0.293  Sum_probs=86.5

Q ss_pred             CCCCEEEEECCcccccccc----C-CCcEEEEEeCCHHHHHHHHHc-------------CCeEEEeeCCCCCCCCCCccE
Q 018606           80 PSGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR-------------GHEVLVADAVNLPYRSDFGDA  141 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~----~-~~~~v~gvD~S~~~l~~a~~~-------------~i~~~~~D~~~l~~~~~~fD~  141 (353)
                      .++.+|||||||+|.++..    . +...|+|+|+|+.|++.|+++             +++++++|+..+++.++.||+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            3778999999999998642    2 337999999999999999871             478999999999998899999


Q ss_pred             EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      |++..+|+|+.++. ...+++++.++|||| .++|.+++.
T Consensus       800 VV~~eVLeHL~dp~-l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          800 GTCLEVIEHMEEDQ-ACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             EEEESCGGGSCHHH-HHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             EEEeCchhhCChHH-HHHHHHHHHHHcCCC-EEEEEecCc
Confidence            99999999999754 457999999999999 888888764

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.48  E-value=2.5e-13  Score=131.30  Aligned_cols=100  Identities=16%  Similarity=0.198  Sum_probs=85.3

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      +.++.+|||||||+|.++.    ..++.+++++|+ +.+++.|+++        +++++.+|+. .+++. .||+|++..
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~  276 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKH  276 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEES
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhh
Confidence            4567899999999999753    368889999999 9999999874        5899999998 56655 799999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ++|++++.+ ...+|++++++|+|||+++|..+...
T Consensus       277 vlh~~~d~~-~~~~L~~~~~~L~pgG~l~i~e~~~~  311 (369)
T 3gwz_A          277 VLHDWDDDD-VVRILRRIATAMKPDSRLLVIDNLID  311 (369)
T ss_dssp             CGGGSCHHH-HHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred             hhccCCHHH-HHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            999998754 46899999999999999999876543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.46  E-value=1.6e-13  Score=126.36  Aligned_cols=103  Identities=15%  Similarity=0.229  Sum_probs=84.4

Q ss_pred             CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHH------HHHHHHHc--------CCeEEEee---CCCCCCC
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPS------LIKICVDR--------GHEVLVAD---AVNLPYR  135 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~------~l~~a~~~--------~i~~~~~D---~~~l~~~  135 (353)
                      .+.++.+|||||||+|.++..     .+...|+|+|+|+.      |++.|+++        +++++.+|   ...+|++
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  119 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA  119 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence            467889999999999997542     35589999999997      89888875        47888998   4556777


Q ss_pred             CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          136 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       136 ~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +++||+|++..+++|+++.   ..+++.+.++++|||++++..+....
T Consensus       120 ~~~fD~v~~~~~l~~~~~~---~~~~~~~~~l~~~gG~l~~~~~~~~~  164 (275)
T 3bkx_A          120 DQHFDRVVLAHSLWYFASA---NALALLFKNMAAVCDHVDVAEWSMQP  164 (275)
T ss_dssp             TCCCSEEEEESCGGGSSCH---HHHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred             CCCEEEEEEccchhhCCCH---HHHHHHHHHHhCCCCEEEEEEecCCC
Confidence            8999999999999999984   45677777777779999999887654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.46  E-value=1.1e-13  Score=128.64  Aligned_cols=96  Identities=14%  Similarity=0.141  Sum_probs=79.1

Q ss_pred             CCCEEEEECCcccc----cc----ccCC----CcEEEEEeCCHHHHHHHHHc----------------------------
Q 018606           81 SGSLVLDAGCGNGK----YL----GLNP----DCFFVGCDISPSLIKICVDR----------------------------  120 (353)
Q Consensus        81 ~~~~VLDvGCG~G~----~~----~~~~----~~~v~gvD~S~~~l~~a~~~----------------------------  120 (353)
                      ++.+|||+|||||.    ++    ...+    +..|+|+|+|+.||+.|++.                            
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999997    21    1112    47999999999999999874                            


Q ss_pred             ----------CCeEEEeeCCCCCCC-CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          121 ----------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       121 ----------~i~~~~~D~~~l~~~-~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                                .+.|.++|+...|++ .+.||+|+|.++++|+.++. ..+++.+++++|+|||.|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~-~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT-QEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH-HHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHH-HHHHHHHHHHHhCCCcEEEEE
Confidence                      267888999886665 57899999999999997644 689999999999999999874

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.45  E-value=1.9e-13  Score=121.99  Aligned_cols=95  Identities=16%  Similarity=0.109  Sum_probs=72.4

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHH----HHHHHc-CCeEEEeeCCCC----CCCCCCccEEEec
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLI----KICVDR-GHEVLVADAVNL----PYRSDFGDAAISI  145 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l----~~a~~~-~i~~~~~D~~~l----~~~~~~fD~Vi~~  145 (353)
                      +.++.+|||||||+|.++.    ..+...|+|+|+|+.|+    +.|+++ ++.++.+|+...    ++. ++||+|++.
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQD  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence            4678999999999999753    23357999999999865    444444 678888898773    444 789999997


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .     ...+....++.++.++|||||++++...
T Consensus       134 ~-----~~~~~~~~~l~~~~r~LkpgG~l~i~~~  162 (210)
T 1nt2_A          134 I-----AQKNQIEILKANAEFFLKEKGEVVIMVK  162 (210)
T ss_dssp             C-----CSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c-----cChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            2     2223245669999999999999999953

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.45  E-value=2.1e-13  Score=116.93  Aligned_cols=98  Identities=16%  Similarity=0.108  Sum_probs=78.1

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----CCe---EEEeeCCC-CCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----GHE---VLVADAVN-LPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----~i~---~~~~D~~~-l~~~~~~fD~Vi~~  145 (353)
                      .+.++.+|||+|||+|.++.    ..++..|+|+|+|+.+++.|+++    ++.   ++.+|+.. ++...+.||+|++.
T Consensus        22 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~  101 (178)
T 3hm2_A           22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG  101 (178)
T ss_dssp             CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEEC
Confidence            45678899999999999753    34678999999999999999976    222   77777754 33323889999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .+++|       ..+++++.++|+|||++++.....+
T Consensus       102 ~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~  131 (178)
T 3hm2_A          102 GGLTA-------PGVFAAAWKRLPVGGRLVANAVTVE  131 (178)
T ss_dssp             C-TTC-------TTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred             CcccH-------HHHHHHHHHhcCCCCEEEEEeeccc
Confidence            99887       2579999999999999999987654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.45  E-value=6.5e-13  Score=117.08  Aligned_cols=99  Identities=14%  Similarity=0.117  Sum_probs=82.6

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.++.+|||||||+|.++.    ..+...|+|+|+|+.+++.|+++       +++++.+|+.........||+|++..
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~  116 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGG  116 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESC
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECC
Confidence            45678999999999999753    35678999999999999999875       57899999976544447899999988


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +++   +   ...++.++.++|+|||++++.....+
T Consensus       117 ~~~---~---~~~~l~~~~~~LkpgG~l~~~~~~~~  146 (204)
T 3e05_A          117 SGG---M---LEEIIDAVDRRLKSEGVIVLNAVTLD  146 (204)
T ss_dssp             CTT---C---HHHHHHHHHHHCCTTCEEEEEECBHH
T ss_pred             CCc---C---HHHHHHHHHHhcCCCeEEEEEecccc
Confidence            775   3   67899999999999999999876643

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.45  E-value=1.4e-13  Score=123.55  Aligned_cols=88  Identities=23%  Similarity=0.282  Sum_probs=76.4

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeC-CCCCCC-CCCccEEEechhhhhcC
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADA-VNLPYR-SDFGDAAISIAVLHHLS  152 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~-~~l~~~-~~~fD~Vi~~~vl~h~~  152 (353)
                      ++++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++  +++++++|+ ..+|++ +++||+|++.      .
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~  119 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------R  119 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------S
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------C
Confidence            57889999999999997542  3367999999999999999987  789999999 568887 8899999997      2


Q ss_pred             ChhHHHHHHHHHHhccccCcEEE
Q 018606          153 TESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      +   +..+++++.++|||||+++
T Consensus       120 ~---~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          120 G---PTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             C---CSGGGGGHHHHEEEEEEEE
T ss_pred             C---HHHHHHHHHHHcCCCcEEE
Confidence            3   4678999999999999998

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.44  E-value=1.2e-13  Score=120.39  Aligned_cols=100  Identities=11%  Similarity=0.041  Sum_probs=82.0

Q ss_pred             CCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEEEechh
Q 018606           80 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAV  147 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~Vi~~~v  147 (353)
                      .++.+|||+|||+|.++.   ..+...|+|+|+|+.|++.|+++       +++++++|+..++  +++++||+|++...
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p  122 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP  122 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence            467899999999999754   24445899999999999999886       4789999998764  44689999999888


Q ss_pred             hhhcCChhHHHHHHHHHHh--ccccCcEEEEEEcCC
Q 018606          148 LHHLSTESRRKKAIEELVR--VVKKGSLVLITVWAV  181 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~r--vLkpgG~lli~~~~~  181 (353)
                      +++..  +....++.++.+  +|+|||++++.....
T Consensus       123 ~~~~~--~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          123 YNVDS--ADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             TTSCH--HHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             CCcch--hhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            77642  226789999999  999999999987654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.44  E-value=2.7e-13  Score=117.27  Aligned_cols=102  Identities=17%  Similarity=0.162  Sum_probs=83.6

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------C--CeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------G--HEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~--i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      ..++.+|||+|||+|.++..  ..+..++|+|+++.+++.|+++       +  ++++.+|+.. +++++.||+|++...
T Consensus        50 ~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~  128 (194)
T 1dus_A           50 VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPP  128 (194)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCC
T ss_pred             cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCC
Confidence            45788999999999997532  2277999999999999999876       2  7899999887 345778999999888


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ++|.  .+....+++++.++|+|||.+++..+....
T Consensus       129 ~~~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  162 (194)
T 1dus_A          129 IRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTKQG  162 (194)
T ss_dssp             STTC--HHHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred             cccc--hhHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            7763  223678999999999999999999987543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.44  E-value=4.8e-14  Score=126.70  Aligned_cols=125  Identities=14%  Similarity=0.215  Sum_probs=89.1

Q ss_pred             HHHHHHHhhccccccccccChHHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----
Q 018606           49 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----  120 (353)
Q Consensus        49 ~v~~~yd~~a~~y~~~~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----  120 (353)
                      .+..++..+.-.|... ...|..   ++.  .++.+|||||||+|.++.    ..++..|+|+|+|+.|++.|+++    
T Consensus         8 ~~~~~~~~~~~~~~~~-~~d~~~---~f~--~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~   81 (218)
T 3dxy_A            8 ALENYWPVMGVEFSED-MLDFPA---LFG--REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEE   81 (218)
T ss_dssp             HHHHHHHHHBCCCCSS-CCCHHH---HHS--SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHhCCCCCCC-CCCHHH---HcC--CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHh
Confidence            4555555554444322 222332   222  256799999999999753    37788999999999999998875    


Q ss_pred             ---CCeEEEeeCCCC-C--CCCCCccEEEechhhhhcCChhH-----HHHHHHHHHhccccCcEEEEEEc
Q 018606          121 ---GHEVLVADAVNL-P--YRSDFGDAAISIAVLHHLSTESR-----RKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       121 ---~i~~~~~D~~~l-~--~~~~~fD~Vi~~~vl~h~~~~e~-----~~~~l~el~rvLkpgG~lli~~~  179 (353)
                         ++.++++|+..+ +  +++++||.|++.....+......     ...++.++.++|||||.+++.+-
T Consensus        82 ~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A           82 GLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             TCSSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CCCcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence               578999998874 3  67899999998754443322110     12599999999999999999874

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.44  E-value=1.9e-13  Score=119.63  Aligned_cols=105  Identities=16%  Similarity=0.223  Sum_probs=84.1

Q ss_pred             CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC-CCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP-YRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~-~~~~~fD~Vi  143 (353)
                      .+.++.+|||+|||+|.++..     .+...|+|+|+|+.+++.|+++        +++++++|+..++ +.+++||+|+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence            467889999999999987531     3567999999999999999876        4789999998876 5668999999


Q ss_pred             echhhh------hcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          144 SIAVLH------HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       144 ~~~vl~------h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +...+.      +....+....+++++.++|||||++++..+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~  143 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGG  143 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBT
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCC
Confidence            876541      122333356799999999999999999987653

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.43  E-value=4.8e-13  Score=127.04  Aligned_cols=98  Identities=13%  Similarity=0.179  Sum_probs=83.5

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      +.+ .+|||||||+|.++.    ..++.+++++|+ +.+++.|+++        +++++.+|+.. +++ +.||+|++..
T Consensus       166 ~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~  241 (334)
T 2ip2_A          166 FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSR  241 (334)
T ss_dssp             CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEES
T ss_pred             CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEch
Confidence            344 899999999999753    367889999999 9999998875        58999999987 554 6799999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ++||+++.+ ...+|+++.++|+|||+++|..+..
T Consensus       242 vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~  275 (334)
T 2ip2_A          242 IIGDLDEAA-SLRLLGNCREAMAGDGRVVVIERTI  275 (334)
T ss_dssp             CGGGCCHHH-HHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred             hccCCCHHH-HHHHHHHHHHhcCCCCEEEEEEecc
Confidence            999997644 5689999999999999999997653

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.43  E-value=3.1e-13  Score=128.09  Aligned_cols=100  Identities=17%  Similarity=0.277  Sum_probs=86.3

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      .++.+|||||||+|.++.    ..++.+++|+|++ .+++.|+++        +++++.+|+...+++.+ ||+|++..+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~  241 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF  241 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence            667899999999999753    3578899999999 999999875        48999999998777554 999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +||+++.+ ...+|+++.++|+|||++++..+...
T Consensus       242 l~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          242 LHHFDVAT-CEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             GGGSCHHH-HHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             hccCCHHH-HHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            99997644 67999999999999999999987654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.43  E-value=7e-14  Score=118.88  Aligned_cols=108  Identities=19%  Similarity=0.198  Sum_probs=85.9

Q ss_pred             HHHHHhCCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCC
Q 018606           72 VATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDF  138 (353)
Q Consensus        72 ~~~~l~~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~  138 (353)
                      +...+..+.++.+|||+|||+|.++.    . .++..++|+|+++ |++.   .+++++.+|+...+        +++++
T Consensus        13 ~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T 1ej0_A           13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---VGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---CcEEEEEcccccchhhhhhhccCCCCc
Confidence            33444456788999999999999753    2 3568999999999 7654   46889999999876        77789


Q ss_pred             ccEEEechhhhhcCChhH--------HHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          139 GDAAISIAVLHHLSTESR--------RKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       139 fD~Vi~~~vl~h~~~~e~--------~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ||+|++..++++......        ...++.++.++|+|||.+++.++..+.
T Consensus        89 ~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  141 (180)
T 1ej0_A           89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG  141 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred             eeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence            999999988887765311        158899999999999999998876544

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.43  E-value=3.7e-13  Score=119.79  Aligned_cols=100  Identities=17%  Similarity=0.297  Sum_probs=80.7

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEEEech
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIA  146 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~Vi~~~  146 (353)
                      .++.+|||||||+|.++.    ..++..++|+|+|+.+++.|+++       ++.++++|+..++  +++++||+|++..
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~  119 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  119 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence            457899999999999753    36788999999999999999875       5789999999877  7788999999986


Q ss_pred             hhhhcCChh-----HHHHHHHHHHhccccCcEEEEEEc
Q 018606          147 VLHHLSTES-----RRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       147 vl~h~~~~e-----~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ...+.....     ....++.++.++|+|||.+++.+-
T Consensus       120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            543322100     025799999999999999999763

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.42  E-value=3.8e-13  Score=121.98  Aligned_cols=92  Identities=18%  Similarity=0.064  Sum_probs=77.6

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC---CCCccEEEec
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGDAAISI  145 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~---~~~fD~Vi~~  145 (353)
                      .++.+|||||||+|.++.    ..++..|+|+|+|+.|++.|+++       +++++++|+..+++.   +++||+|++.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            467899999999998643    26788999999999999999875       578999999887753   5789999997


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .+    .+   +..++.++.++|+|||++++..
T Consensus       149 ~~----~~---~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          149 AV----AR---LSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             CC----SC---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cc----CC---HHHHHHHHHHhcCCCCEEEEEe
Confidence            73    44   6789999999999999998864

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.42  E-value=7.9e-14  Score=133.95  Aligned_cols=98  Identities=18%  Similarity=0.134  Sum_probs=80.0

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      +.++.+|||||||+|.++..   .+..+|+|+|+| .|++.|+++        .++++.+|+..+++++++||+|++..+
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM  142 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence            45788999999999997532   344599999999 499998875        279999999999998899999999776


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      .+++.....+..++.++.|+|||||+++..
T Consensus       143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            555533333788999999999999998743

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.42  E-value=2.5e-13  Score=124.82  Aligned_cols=93  Identities=34%  Similarity=0.437  Sum_probs=80.1

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      .++.+|||||||+|.++.    ..++..|+|+|+|+.|++.|+++  ++.+..+|+..+++++++||+|++..+.     
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-----  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-----  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence            578899999999999764    23578999999999999999987  5889999999999888999999986541     


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                           .++.++.++|||||++++.++...
T Consensus       159 -----~~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          159 -----CKAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             -----CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred             -----hhHHHHHHhcCCCcEEEEEEcCHH
Confidence                 258899999999999999987643

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.42  E-value=4.3e-13  Score=130.28  Aligned_cols=134  Identities=13%  Similarity=0.136  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHHHHhhcccccc---------cccc--ChHHHHHHHh--CCCCCCEEEEECCccccccc----cCCCcEEE
Q 018606           43 PELEKKYVHRVYDAIAPHFSS---------TRFA--KWPKVATFLN--SLPSGSLVLDAGCGNGKYLG----LNPDCFFV  105 (353)
Q Consensus        43 ~~~e~~~v~~~yd~~a~~y~~---------~~~~--~~~~~~~~l~--~l~~~~~VLDvGCG~G~~~~----~~~~~~v~  105 (353)
                      ..+-...+..+|++.-...+.         ..|.  ....+..++.  .+.++.+|||||||+|..+.    ..+...++
T Consensus       122 ~~~~~~Il~~~Y~r~V~~~~~L~~Ye~Fs~~vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVv  201 (438)
T 3uwp_A          122 TGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHY  201 (438)
T ss_dssp             HHHHHHHHHHHHHHHCSCGGGSCCCSSSCGGGGGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEE
T ss_pred             HHHHHHHHHHHHhhcCCCHHHhcCcccCCCcccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence            456667788888865543222         1111  1223333333  56789999999999999753    13334699


Q ss_pred             EEeCCHHHHHHHHHc----------------CCeEEEeeCCCCCCCC--CCccEEEechhhhhcCChhHHHHHHHHHHhc
Q 018606          106 GCDISPSLIKICVDR----------------GHEVLVADAVNLPYRS--DFGDAAISIAVLHHLSTESRRKKAIEELVRV  167 (353)
Q Consensus       106 gvD~S~~~l~~a~~~----------------~i~~~~~D~~~l~~~~--~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rv  167 (353)
                      |+|+|+.|++.|++.                +++|+++|+.++++.+  ..||+|++...++ .  ++ ....|.++.|+
T Consensus       202 GIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~--pd-l~~aL~Ei~Rv  277 (438)
T 3uwp_A          202 GVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAF-G--PE-VDHQLKERFAN  277 (438)
T ss_dssp             EEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTTC-C--HH-HHHHHHHHHTT
T ss_pred             EEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEccccc-C--ch-HHHHHHHHHHc
Confidence            999999999888751                4789999999988754  4799999977653 2  22 67889999999


Q ss_pred             cccCcEEEEEEcC
Q 018606          168 VKKGSLVLITVWA  180 (353)
Q Consensus       168 LkpgG~lli~~~~  180 (353)
                      |||||+|++....
T Consensus       278 LKPGGrIVssE~f  290 (438)
T 3uwp_A          278 MKEGGRIVSSKPF  290 (438)
T ss_dssp             SCTTCEEEESSCS
T ss_pred             CCCCcEEEEeecc
Confidence            9999999987443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.42  E-value=2.5e-13  Score=130.05  Aligned_cols=97  Identities=21%  Similarity=0.191  Sum_probs=78.5

Q ss_pred             CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.++.+|||||||+|.++..   ....+|+|+|+|+ |++.|+++        +++++.+|+..+++++++||+|++..
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~  139 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW  139 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcC
Confidence            456788999999999997532   3335999999996 99998875        47899999999998888999999977


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      +.+++.....+..++.++.++|||||+++
T Consensus       140 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          140 MGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             chhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            43333333336789999999999999987

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.42  E-value=6.6e-14  Score=135.85  Aligned_cols=99  Identities=18%  Similarity=0.102  Sum_probs=81.5

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.++.+|||||||+|.++..  ..+. +|+|+|+| .|++.|+++        .++++.+|+..++++ ++||+|++..
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~  137 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW  137 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECC
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcC
Confidence            456789999999999997532  2244 99999999 999999876        279999999998876 8999999977


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +.+++.....+..++.++.++|||||++++..
T Consensus       138 ~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          138 MGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             CBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             hhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            66766544447789999999999999997654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.41  E-value=7.1e-14  Score=122.27  Aligned_cols=97  Identities=15%  Similarity=0.174  Sum_probs=78.1

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----CC--eEEEeeCCCCCCCCCCccEEEechh
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----GH--EVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----~i--~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      .+++..+|||+|||+|.++.    ..|+.+|+|+|+|+.|++.++++    ++  ++..+|.... .+.+.||+|++..+
T Consensus        46 ~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~  124 (200)
T 3fzg_A           46 NIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKM  124 (200)
T ss_dssp             HSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETC
T ss_pred             hcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhH
Confidence            35778899999999999753    37788999999999999999987    33  4666776554 45688999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      |||+ +.  +...+.++.+.|+|||.++ +..
T Consensus       125 LHlL-~~--~~~al~~v~~~L~pggvfI-Sfp  152 (200)
T 3fzg_A          125 LPVL-KQ--QDVNILDFLQLFHTQNFVI-SFP  152 (200)
T ss_dssp             HHHH-HH--TTCCHHHHHHTCEEEEEEE-EEE
T ss_pred             HHhh-hh--hHHHHHHHHHHhCCCCEEE-EeC
Confidence            9999 32  5677789999999998754 444

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.41  E-value=4.6e-13  Score=127.25  Aligned_cols=100  Identities=20%  Similarity=0.187  Sum_probs=84.6

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      .+..+|||||||+|.++.    ..|+..++++|+ +.+++.|+++        ++++..+|+. .+++. .||+|++..+
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v  244 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV  244 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence            346799999999999763    368889999999 9999999874        4899999997 45554 8999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +||+++++ ..++|++++++|+|||+++|..+....
T Consensus       245 lh~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~  279 (332)
T 3i53_A          245 LHDWDDLS-AVAILRRCAEAAGSGGVVLVIEAVAGD  279 (332)
T ss_dssp             GGGSCHHH-HHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred             hccCCHHH-HHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence            99998754 578999999999999999999876443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.41  E-value=2.3e-13  Score=121.50  Aligned_cols=100  Identities=17%  Similarity=0.263  Sum_probs=79.2

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEEEech
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIA  146 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~Vi~~~  146 (353)
                      .++.+|||||||+|.++.    ..++..++|+|+|+.|++.|+++       ++.++++|+..++  +++++||.|++..
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence            357899999999999753    36788999999999999999875       5789999998876  6788999998765


Q ss_pred             hhhhcCChh-----HHHHHHHHHHhccccCcEEEEEEc
Q 018606          147 VLHHLSTES-----RRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       147 vl~h~~~~e-----~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ...+.....     ....++.++.++|||||.+++.+-
T Consensus       117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td  154 (213)
T 2fca_A          117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  154 (213)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence            433222100     025789999999999999999873

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.41  E-value=4.8e-13  Score=121.28  Aligned_cols=98  Identities=13%  Similarity=0.163  Sum_probs=79.3

Q ss_pred             CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCC---CCCCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVN---LPYRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~---l~~~~~~fD~Vi~  144 (353)
                      .++||.+|||+|||+|.++..     .+...|+|+|+|+.|++.++++     ++..+.+|...   .++..+++|+|++
T Consensus        74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~  153 (233)
T 4df3_A           74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYA  153 (233)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEE
Confidence            368999999999999998642     6788999999999999998876     67888888765   3456788999986


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ..  .|..   ....++.++.++|||||+++|.+..
T Consensus       154 d~--~~~~---~~~~~l~~~~r~LKpGG~lvI~ik~  184 (233)
T 4df3_A          154 DV--AQPE---QAAIVVRNARFFLRDGGYMLMAIKA  184 (233)
T ss_dssp             CC--CCTT---HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ec--cCCh---hHHHHHHHHHHhccCCCEEEEEEec
Confidence            42  2222   2678999999999999999998654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.40  E-value=4.1e-13  Score=118.69  Aligned_cols=94  Identities=19%  Similarity=0.134  Sum_probs=80.9

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .+.++.+|||||||+|.++..  ..+.+|+|+|+|+.+++.|+++       +++++.+|+...+...+.||+|++..++
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~  153 (210)
T 3lbf_A           74 ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAP  153 (210)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBC
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccch
Confidence            457889999999999997542  2267999999999999999886       4789999998877667899999999999


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +|+++         ++.++|||||++++.+..
T Consensus       154 ~~~~~---------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          154 PEIPT---------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             SSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred             hhhhH---------HHHHhcccCcEEEEEEcC
Confidence            99875         378999999999999876

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.40  E-value=9.9e-14  Score=119.51  Aligned_cols=87  Identities=14%  Similarity=0.100  Sum_probs=77.5

Q ss_pred             CCCCCCEEEEECCccccccccCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCC---CCCCccEEEechhhhhc
Q 018606           78 SLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPY---RSDFGDAAISIAVLHHL  151 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~~---~~~~fD~Vi~~~vl~h~  151 (353)
                      .+.+|.+|||||||.            +++|+|+.|++.|+++   ++++.++|+..+++   ++++||+|++..++||+
T Consensus         9 g~~~g~~vL~~~~g~------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~   76 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGST   76 (176)
T ss_dssp             TCCTTSEEEEEECTT------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCC
T ss_pred             CCCCCCEEEEecCCc------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhc
Confidence            467899999999996            2399999999999987   58999999999887   78999999999999999


Q ss_pred             -CChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          152 -STESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       152 -~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                       .+   ...+|++++|+|||||++++...
T Consensus        77 ~~~---~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           77 TLH---SAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             CCC---CHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccC---HHHHHHHHHHHCCCCEEEEEEcc
Confidence             66   57899999999999999999543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.40  E-value=3.5e-13  Score=124.73  Aligned_cols=101  Identities=21%  Similarity=0.241  Sum_probs=82.3

Q ss_pred             CCEEEEECCcccc--c-cc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC------CCCCCcc-
Q 018606           82 GSLVLDAGCGNGK--Y-LG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP------YRSDFGD-  140 (353)
Q Consensus        82 ~~~VLDvGCG~G~--~-~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~------~~~~~fD-  140 (353)
                      ...|||||||++.  + ..    ..|+++|+++|.|+.|++.|+++       ++.|+++|+..++      ...+.|| 
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~  158 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL  158 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence            3699999999732  2 21    36889999999999999999886       2789999998752      1124455 


Q ss_pred             ----EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          141 ----AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       141 ----~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                          +|+++++|||+++.+++..+|+++.+.|+|||+|+++.+..+
T Consensus       159 ~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          159 TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence                688999999999876668899999999999999999988754

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.40  E-value=1.7e-12  Score=116.26  Aligned_cols=105  Identities=12%  Similarity=0.110  Sum_probs=80.9

Q ss_pred             hCCCCCCEEEEECCc-ccccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCC-CCCCCCccEEEec
Q 018606           77 NSLPSGSLVLDAGCG-NGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL-PYRSDFGDAAISI  145 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG-~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l-~~~~~~fD~Vi~~  145 (353)
                      ..++++.+|||+||| +|.++..   ..+..|+|+|+|+.|++.|+++      +++++++|+..+ ++++++||+|++.
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~n  130 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSA  130 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEEC
Confidence            356788999999999 9997532   2267999999999999999876      489999997543 4557899999998


Q ss_pred             hhhhhcCCh----------------hHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          146 AVLHHLSTE----------------SRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       146 ~vl~h~~~~----------------e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ..+++....                +....++.++.++|||||++++.+...
T Consensus       131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (230)
T 3evz_A          131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK  182 (230)
T ss_dssp             CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred             CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence            665554321                113679999999999999999986543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.40  E-value=9.4e-13  Score=116.78  Aligned_cols=98  Identities=12%  Similarity=0.052  Sum_probs=79.3

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      .+.++.+|||||||+|.++..  ..+.+|+|+|+|+.|++.|+++        +++++.+|+.........||+|++...
T Consensus        52 ~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~  131 (204)
T 3njr_A           52 APRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG  131 (204)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc
Confidence            467789999999999997531  2278999999999999999876        478999999884333457999998774


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +    +   .. ++.++.++|||||++++.....+.
T Consensus       132 ~----~---~~-~l~~~~~~LkpgG~lv~~~~~~~~  159 (204)
T 3njr_A          132 G----S---QA-LYDRLWEWLAPGTRIVANAVTLES  159 (204)
T ss_dssp             C----C---HH-HHHHHHHHSCTTCEEEEEECSHHH
T ss_pred             c----c---HH-HHHHHHHhcCCCcEEEEEecCccc
Confidence            4    2   45 999999999999999999876543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.40  E-value=2.2e-13  Score=121.23  Aligned_cols=96  Identities=24%  Similarity=0.279  Sum_probs=76.3

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHH----HHc-------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKIC----VDR-------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a----~~~-------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      +.++.+|||||||+|.++.    ..++..|+|+|+|+.|++.+    +++       ++.++++|+..+|+.++. |.|+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~  103 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH  103 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence            4678899999999999753    36688999999999988853    221       578999999999987665 6655


Q ss_pred             ---echhhh--hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          144 ---SIAVLH--HLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       144 ---~~~vl~--h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                         +...++  |+.+   +..+|+++.++|||||++++..
T Consensus       104 ~~~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          104 VLMPWGSLLRGVLGS---SPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EESCCHHHHHHHHTS---SSHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEccchhhhhhhhcc---HHHHHHHHHHHcCCCcEEEEEe
Confidence               333443  7776   4689999999999999999965

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.39  E-value=5.2e-13  Score=128.91  Aligned_cols=99  Identities=17%  Similarity=0.196  Sum_probs=85.6

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      +.+..+|||||||+|.++.    ..|+.+++++|+ +.+++.|++. +++++.+|+.. |++.+  |+|++..++|++++
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d  274 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSD  274 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCH
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCH
Confidence            5567899999999999764    368889999999 8999888765 78999999988 77654  99999999999986


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .+ ...+|++++++|||||+++|..+...
T Consensus       275 ~~-~~~~L~~~~~~L~pgG~l~i~e~~~~  302 (364)
T 3p9c_A          275 QH-CATLLKNCYDALPAHGKVVLVQCILP  302 (364)
T ss_dssp             HH-HHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             HH-HHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            54 67899999999999999999987644

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.39  E-value=3.8e-13  Score=130.01  Aligned_cols=99  Identities=19%  Similarity=0.242  Sum_probs=85.0

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      +.++.+|||||||+|.++.    ..|+.+++++|+ +.+++.|++. +++++.+|+.. +++.+  |+|++..++||+++
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~  276 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSD  276 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCH
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCH
Confidence            4567899999999999763    368899999999 9999888765 78999999987 66654  99999999999987


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .+ ...+|++++++|+|||+++|..+...
T Consensus       277 ~~-~~~~l~~~~~~L~pgG~l~i~e~~~~  304 (368)
T 3reo_A          277 EH-CLKLLKNCYAALPDHGKVIVAEYILP  304 (368)
T ss_dssp             HH-HHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred             HH-HHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            54 57899999999999999999987644

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.39  E-value=9.3e-13  Score=118.63  Aligned_cols=93  Identities=15%  Similarity=0.211  Sum_probs=77.2

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCC----CCCCCCCccEEEec
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVN----LPYRSDFGDAAISI  145 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~----l~~~~~~fD~Vi~~  145 (353)
                      +.++.+|||+|||+|.++.    ..+...|+|+|+|+.|++.|+++     ++.++.+|+..    +++. +.||+|+  
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~--  148 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIY--  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEE--
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEE--
Confidence            4578899999999999753    23457999999999999998875     57889999988    7776 7899998  


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                         +++..++....++.++.++|||||++++.
T Consensus       149 ---~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          149 ---EDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             ---ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence               45566444477899999999999999998

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.39  E-value=4e-13  Score=122.04  Aligned_cols=102  Identities=24%  Similarity=0.321  Sum_probs=76.2

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------------CCeEEEeeCCC-CC--CCCCC
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------------GHEVLVADAVN-LP--YRSDF  138 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------------~i~~~~~D~~~-l~--~~~~~  138 (353)
                      ..++.+|||||||+|.++.    ..++..|+|+|+|+.|++.|+++             ++.++++|+.. ++  +++++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence            3456799999999999753    36788999999999999988642             57899999987 66  77899


Q ss_pred             ccEEEechhhhhcCCh--hHH---HHHHHHHHhccccCcEEEEEEcC
Q 018606          139 GDAAISIAVLHHLSTE--SRR---KKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       139 fD~Vi~~~vl~h~~~~--e~~---~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ||.|++.....|....  .++   ..+|+++.++|||||.|++.+..
T Consensus       124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            9999876543332210  001   47999999999999999998643

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.38  E-value=1.2e-12  Score=125.71  Aligned_cols=100  Identities=16%  Similarity=0.213  Sum_probs=85.8

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      +.++.+|||||||+|.++.    ..++.+++++|+ +.+++.|+++        +++++.+|+...++++.  |+|++..
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~  264 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCR  264 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEES
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEec
Confidence            4677899999999999753    367889999999 9999999875        38999999998877544  9999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ++||+++.+ ...+|+++.++|+|||+++|..+...
T Consensus       265 vlh~~~d~~-~~~~l~~~~~~L~pgG~l~i~e~~~~  299 (359)
T 1x19_A          265 ILYSANEQL-STIMCKKAFDAMRSGGRLLILDMVID  299 (359)
T ss_dssp             CGGGSCHHH-HHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred             hhccCCHHH-HHHHHHHHHHhcCCCCEEEEEecccC
Confidence            999998644 68899999999999999999887654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.38  E-value=6.6e-13  Score=117.01  Aligned_cols=96  Identities=14%  Similarity=0.038  Sum_probs=80.3

Q ss_pred             CCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           79 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      +.++.+|||+|||+|.++.   ..+...|+|+|+|+.|++.|+++       +++++.+|+...+  +++||+|++..++
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~fD~i~~~~~~  135 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--DGKFDLIVANILA  135 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--CSCEEEEEEESCH
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--CCCceEEEECCcH
Confidence            5678899999999999753   24456999999999999999886       3889999987753  5899999999888


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +++      ..+++++.++|+|||++++..+...
T Consensus       136 ~~~------~~~l~~~~~~L~~gG~l~~~~~~~~  163 (205)
T 3grz_A          136 EIL------LDLIPQLDSHLNEDGQVIFSGIDYL  163 (205)
T ss_dssp             HHH------HHHGGGSGGGEEEEEEEEEEEEEGG
T ss_pred             HHH------HHHHHHHHHhcCCCCEEEEEecCcc
Confidence            764      5789999999999999999866543

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.38  E-value=4.1e-13  Score=129.81  Aligned_cols=98  Identities=24%  Similarity=0.294  Sum_probs=83.9

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      +.++.+|||||||+|.++.    ..++..++++|+ +.|++.|++. +++++.+|+.. +++.  ||+|++..+|||+++
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d  282 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSD  282 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCH
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCH
Confidence            5567899999999999754    367889999999 9999988764 78999999987 6654  999999999999987


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .+ ...+|++++++|+|||+++|..+..
T Consensus       283 ~~-~~~~l~~~~~~L~pgG~l~i~e~~~  309 (372)
T 1fp1_D          283 EK-CIEFLSNCHKALSPNGKVIIVEFIL  309 (372)
T ss_dssp             HH-HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HH-HHHHHHHHHHhcCCCCEEEEEEecc
Confidence            54 4589999999999999999997653

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.38  E-value=9.7e-13  Score=126.77  Aligned_cols=97  Identities=23%  Similarity=0.219  Sum_probs=82.7

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      +.++.+|||||||+|.++.    ..++..++++|+ +.+++.|+++        +++++.+|+.. +++. .||+|++..
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~  256 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSF  256 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEES
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEec
Confidence            4567899999999999753    367889999999 9999999875        58899999876 4443 399999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ++||+++.. ...+|+++.++|+|||+++|..+
T Consensus       257 vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          257 VLLNWSDED-ALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             CGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccCCCHHH-HHHHHHHHHHhcCCCcEEEEEec
Confidence            999998744 46899999999999999999887

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.37  E-value=5.5e-13  Score=127.96  Aligned_cols=98  Identities=16%  Similarity=0.091  Sum_probs=80.4

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      +.++.+|||||||+|.++..   .+..+|+|+|+|+ |++.|+++        +++++.+|+..++++ ++||+|++..+
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~  125 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM  125 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCC
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCc
Confidence            45788999999999997532   3445999999996 88888764        478999999998765 67999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ++|+.... ....+.++.++|||||++++...
T Consensus       126 ~~~~~~~~-~~~~l~~~~~~LkpgG~li~~~~  156 (348)
T 2y1w_A          126 GYMLFNER-MLESYLHAKKYLKPSGNMFPTIG  156 (348)
T ss_dssp             BTTBTTTS-HHHHHHHGGGGEEEEEEEESCEE
T ss_pred             hhcCChHH-HHHHHHHHHhhcCCCeEEEEecC
Confidence            88887544 56788899999999999986643

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.37  E-value=1.2e-12  Score=127.10  Aligned_cols=102  Identities=14%  Similarity=0.083  Sum_probs=85.4

Q ss_pred             CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhhhc
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL  151 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~  151 (353)
                      .++.+|||+|||+|.++..  ..+.+|+|+|+|+.+++.|+++      .++++.+|+...+.++++||+|++...+|+.
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~  311 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVG  311 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTT
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhc
Confidence            3678999999999998542  3367999999999999999886      4789999999988767899999999998872


Q ss_pred             CC--hhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          152 ST--ESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       152 ~~--~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ..  .+....++.++.++|+|||++++.....
T Consensus       312 ~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          312 GAVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             CSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             ccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            21  2336789999999999999999987654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.37  E-value=7.2e-13  Score=114.04  Aligned_cols=98  Identities=16%  Similarity=0.205  Sum_probs=79.6

Q ss_pred             CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh---
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE---  154 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~---  154 (353)
                      .++.+|||+|||+|.++..  ..+ .|+|+|+|+.|++.  ..+++++++|+.. ++++++||+|++...+++..+.   
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~--~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~   97 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES--HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPII   97 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT--CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTT
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc--ccCCeEEECChhh-hcccCCCCEEEECCCCccCCccccc
Confidence            4567999999999998642  334 99999999999998  5579999999988 6667899999999888876543   


Q ss_pred             ---hHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          155 ---SRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       155 ---e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                         .....++.++.+.| |||++++..+...
T Consensus        98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~  127 (170)
T 3q87_B           98 GGGYLGREVIDRFVDAV-TVGMLYLLVIEAN  127 (170)
T ss_dssp             BCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG
T ss_pred             cCCcchHHHHHHHHhhC-CCCEEEEEEecCC
Confidence               11357889999999 9999999886543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.37  E-value=5.1e-13  Score=114.88  Aligned_cols=109  Identities=15%  Similarity=0.046  Sum_probs=82.4

Q ss_pred             HHHHHHHhCCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CCCCCC
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPYRSD  137 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-l~~~~~  137 (353)
                      ..+...+....++.+|||+|||+|.++.   ..+...|+|+|+|+.|++.|+++        +++++.+|+.. ++..++
T Consensus        20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   99 (177)
T 2esr_A           20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG   99 (177)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred             HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence            3445555545678899999999999753   23446999999999999999875        36788899877 344456


Q ss_pred             CccEEEechhhhhcCChhHHHHHHHHHH--hccccCcEEEEEEcCCC
Q 018606          138 FGDAAISIAVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWAVE  182 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~--rvLkpgG~lli~~~~~~  182 (353)
                      .||+|++...++..    .....+..+.  ++|+|||++++......
T Consensus       100 ~fD~i~~~~~~~~~----~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A          100 RFDLVFLDPPYAKE----TIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             CEEEEEECCSSHHH----HHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCCEEEECCCCCcc----hHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            79999998665421    1456677776  99999999999986644

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.37  E-value=2.3e-12  Score=123.91  Aligned_cols=99  Identities=23%  Similarity=0.288  Sum_probs=84.4

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      +.+..+|||||||+|.++.    ..|+.+++..|+ +.+++.|++.       +++++.+|+...|.+  .+|++++..+
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~v  253 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARV  253 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESS
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeee
Confidence            3456799999999999753    488999999998 8899999875       589999999876654  4699999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ||++++++ ...+|++++++|+|||+++|.....
T Consensus       254 lh~~~d~~-~~~iL~~~~~al~pgg~lli~e~~~  286 (353)
T 4a6d_A          254 LHDWADGK-CSHLLERIYHTCKPGGGILVIESLL  286 (353)
T ss_dssp             GGGSCHHH-HHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred             cccCCHHH-HHHHHHHHHhhCCCCCEEEEEEeee
Confidence            99998755 5789999999999999999997654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.35  E-value=1.3e-12  Score=117.22  Aligned_cols=95  Identities=18%  Similarity=0.199  Sum_probs=79.2

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      .+.++.+|||||||+|.++..  ..+..|+|+|+++.+++.|+++     +++++.+|+......+++||+|++..+++|
T Consensus        67 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~  146 (231)
T 1vbf_A           67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT  146 (231)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHH
Confidence            457788999999999997542  2237999999999999999987     688999999873334678999999999998


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +.+         ++.++|+|||++++.+...
T Consensus       147 ~~~---------~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          147 LLC---------KPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             CCH---------HHHHTEEEEEEEEEEECSS
T ss_pred             HHH---------HHHHHcCCCcEEEEEEcCC
Confidence            863         5789999999999998654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.35  E-value=6.1e-13  Score=126.66  Aligned_cols=97  Identities=23%  Similarity=0.241  Sum_probs=78.2

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      +.++.+|||||||+|.++..   .+..+|+|+|+| .|++.|+++        +++++.+|+..+++++++||+|++..+
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  114 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence            45678999999999997532   333599999999 589988875        378999999999888789999999865


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEE
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLI  176 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli  176 (353)
                      .+++.....+..++.++.++|||||+++.
T Consensus       115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          115 GYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            55554433367899999999999999973

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.35  E-value=1e-12  Score=113.44  Aligned_cols=104  Identities=12%  Similarity=0.027  Sum_probs=79.5

Q ss_pred             HHhCCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC----CCCCCc
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP----YRSDFG  139 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~----~~~~~f  139 (353)
                      .+....++.+|||+|||+|.++.   ..+..+|+|+|+|+.|++.|+++        +++++.+|+....    ..++.|
T Consensus        38 ~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~f  117 (187)
T 2fhp_A           38 MIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQF  117 (187)
T ss_dssp             HHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCC
Confidence            33334567899999999999754   24456999999999999999875        3789999987632    236789


Q ss_pred             cEEEechhhhhcCChhHHHHHHHHH--HhccccCcEEEEEEcCCC
Q 018606          140 DAAISIAVLHHLSTESRRKKAIEEL--VRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       140 D~Vi~~~vl~h~~~~e~~~~~l~el--~rvLkpgG~lli~~~~~~  182 (353)
                      |+|++...++ ...   ....+..+  .++|+|||.+++......
T Consensus       118 D~i~~~~~~~-~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          118 DLVLLDPPYA-KQE---IVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             EEEEECCCGG-GCC---HHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CEEEECCCCC-chh---HHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            9999987754 333   35566666  899999999999876643

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.35  E-value=2.1e-13  Score=132.10  Aligned_cols=121  Identities=17%  Similarity=0.198  Sum_probs=88.7

Q ss_pred             HHhhcccccccccc---Ch-HHHHHHHhCC-CCCCEEEEECCc------cccc-c---c-cCCCcEEEEEeCCHHHHHHH
Q 018606           54 YDAIAPHFSSTRFA---KW-PKVATFLNSL-PSGSLVLDAGCG------NGKY-L---G-LNPDCFFVGCDISPSLIKIC  117 (353)
Q Consensus        54 yd~~a~~y~~~~~~---~~-~~~~~~l~~l-~~~~~VLDvGCG------~G~~-~---~-~~~~~~v~gvD~S~~~l~~a  117 (353)
                      |++++..|....+.   .+ ..+..++..+ .++.+|||||||      +|.. +   . ..++..|+|+|+|+.|.  .
T Consensus       184 fd~lA~~Y~tDK~~~~h~y~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--~  261 (419)
T 3sso_A          184 LSELSSRYFTPKFGFLHWFTPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--V  261 (419)
T ss_dssp             HHHHHHHTTCTTBSSSCBCHHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--G
T ss_pred             HHHHHHHhCCCcccccchHHHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--h
Confidence            56667777543333   12 3444445433 456899999999      5543 2   1 25788999999999984  2


Q ss_pred             HHcCCeEEEeeCCCCCCC------CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          118 VDRGHEVLVADAVNLPYR------SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       118 ~~~~i~~~~~D~~~l~~~------~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ...+++|+++|+.++++.      +++||+|++... |++.+   ...+|+++.++|||||++++.++.
T Consensus       262 ~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~~d---~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          262 DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HINAH---VRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCHHH---HHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             cCCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccchh---HHHHHHHHHHhcCCCeEEEEEecc
Confidence            223799999999998876      689999999754 54433   688999999999999999998765

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.34  E-value=1.7e-13  Score=120.74  Aligned_cols=106  Identities=20%  Similarity=0.228  Sum_probs=64.7

Q ss_pred             HHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCC-----CC
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRS-----DF  138 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~-----~~  138 (353)
                      ..+....++.+|||+|||+|.++.    ..++..++|+|+|+.|++.|+++      +++++++|+.. ++++     ++
T Consensus        23 ~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~  101 (215)
T 4dzr_A           23 RFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRP  101 (215)
T ss_dssp             HHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCC
T ss_pred             HHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCc
Confidence            334334678899999999999753    35678999999999999999886      46778888877 5555     89


Q ss_pred             ccEEEech------hhhhcCChhH-----------------HHHHHHHHHhccccCcEEEEEEcC
Q 018606          139 GDAAISIA------VLHHLSTESR-----------------RKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       139 fD~Vi~~~------vl~h~~~~e~-----------------~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ||+|++..      .++++....+                 ...+++++.++|||||++++....
T Consensus       102 fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          102 WHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             BSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             ccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            99999953      3344333221                 167899999999999995555443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.34  E-value=1e-12  Score=125.98  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=83.3

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      +.++.+|||||||+|.++.    ..|+.+++++|+ +.|++.|++. +++++.+|+.. +++.  ||+|++..+|||+++
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d  261 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTD  261 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCH
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCH
Confidence            3466899999999999754    367889999999 9999988765 68999999976 5553  999999999999987


Q ss_pred             hhHHHHHHHHHHhcccc---CcEEEEEEcCC
Q 018606          154 ESRRKKAIEELVRVVKK---GSLVLITVWAV  181 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkp---gG~lli~~~~~  181 (353)
                      .+ ...+|++++++|||   ||+++|..+..
T Consensus       262 ~~-~~~~l~~~~~~L~p~~~gG~l~i~e~~~  291 (352)
T 1fp2_A          262 KD-CLRILKKCKEAVTNDGKRGKVTIIDMVI  291 (352)
T ss_dssp             HH-HHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             HH-HHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence            44 45899999999999   99999997654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.34  E-value=6.5e-13  Score=119.81  Aligned_cols=96  Identities=17%  Similarity=0.350  Sum_probs=70.2

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCC-HHHHHHH---HHc-------CCeEEEeeCCCCCCC-CCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDIS-PSLIKIC---VDR-------GHEVLVADAVNLPYR-SDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S-~~~l~~a---~~~-------~i~~~~~D~~~l~~~-~~~fD~Vi  143 (353)
                      .++.+|||||||+|.++.    ..++..|+|+|+| +.|++.|   +++       ++.++++|+..+|.. .+.+|.|.
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            577899999999999753    2678899999999 7888777   443       578999999988632 14445554


Q ss_pred             echhhh----hc-CChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          144 SIAVLH----HL-STESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       144 ~~~vl~----h~-~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +.....    |. .+   ...+|.++.|+|||||++++.+
T Consensus       103 ~~~~~~~~~~~~~~~---~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A          103 ILFPWGTLLEYVIKP---NRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             EESCCHHHHHHHHTT---CHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EeCCCcHHhhhhhcc---hHHHHHHHHHhcCCCcEEEEEE
Confidence            433211    11 11   2468999999999999999954

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.33  E-value=2.4e-12  Score=123.48  Aligned_cols=98  Identities=18%  Similarity=0.231  Sum_probs=83.0

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      +.++.+|||||||+|.++.    ..++..++++|+ +.+++.|+++        +++++.+|+.. +++. .||+|++..
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~  257 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSF  257 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEES
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcc
Confidence            4667899999999999753    367789999999 9999999875        58899999876 4443 499999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++||+++.+ ...+|+++.++|+|||+++|..+.
T Consensus       258 vl~~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          258 VLLNWPDHD-AVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             CGGGSCHHH-HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cccCCCHHH-HHHHHHHHHHhcCCCcEEEEEEEe
Confidence            999998644 468999999999999999999876

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.33  E-value=6.2e-13  Score=117.56  Aligned_cols=98  Identities=15%  Similarity=0.101  Sum_probs=76.4

Q ss_pred             CCCEEEEECCccccccc--c-CCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCC--CCCC-ccEEEec
Q 018606           81 SGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPY--RSDF-GDAAISI  145 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~-~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~~--~~~~-fD~Vi~~  145 (353)
                      ++.+|||+|||+|.++.  . .....|+|+|+|+.|++.|+++         +++++.+|+..+..  .+++ ||+|++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            56899999999999753  2 3335999999999999999875         35788999876432  3578 9999998


Q ss_pred             hhhhhcCChhHHHHHHHHH--HhccccCcEEEEEEcCCC
Q 018606          146 AVLHHLSTESRRKKAIEEL--VRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el--~rvLkpgG~lli~~~~~~  182 (353)
                      ..++ ...   ...++..+  .++|+|||.+++......
T Consensus       133 ~~~~-~~~---~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          133 PPFH-FNL---AEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             CCSS-SCH---HHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCCC-Ccc---HHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            7744 322   56788888  678999999999876543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.32  E-value=1.5e-12  Score=114.18  Aligned_cols=101  Identities=12%  Similarity=0.104  Sum_probs=77.3

Q ss_pred             CCCCCCEEEEECCccccccc----cCC--CcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------------------
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNP--DCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------------------  133 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~--~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~------------------  133 (353)
                      .+.++.+|||||||+|.++.    ..+  +..|+|+|+|+.+    ...++.++++|+...+                  
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~   94 (201)
T 2plw_A           19 FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSV   94 (201)
T ss_dssp             CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-----------CHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccccccchhh
Confidence            36788999999999999753    244  6899999999832    1236899999998876                  


Q ss_pred             -------CCCCCccEEEechhhhhcCC----hhH----HHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          134 -------YRSDFGDAAISIAVLHHLST----ESR----RKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       134 -------~~~~~fD~Vi~~~vl~h~~~----~e~----~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                             +++++||+|++..++++...    ..+    ...++.++.++|||||.+++.++..+
T Consensus        95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  158 (201)
T 2plw_A           95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS  158 (201)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC
Confidence                   56679999999887766421    110    13488999999999999999887643

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.32  E-value=3.7e-12  Score=112.10  Aligned_cols=91  Identities=15%  Similarity=0.106  Sum_probs=76.3

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      ++.+|||+|||+|.++.    ..++..++|+|+|+.+++.|+++       +++++.+|+..++ +.+.||+|++..+  
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~--  141 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF--  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence            47899999999999753    25788999999999999999875       4789999998876 4578999998642  


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                        .+   ...++.++.++|+|||.+++...
T Consensus       142 --~~---~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          142 --AS---LNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             --SS---HHHHHHHHTTSEEEEEEEEEEES
T ss_pred             --CC---HHHHHHHHHHhcCCCcEEEEEeC
Confidence              33   57899999999999999999853

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.32  E-value=4.4e-12  Score=122.97  Aligned_cols=101  Identities=19%  Similarity=0.155  Sum_probs=79.2

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----C------CeEEEeeCCCCCCCCCCccEEEec
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G------HEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----~------i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      .++.+|||+|||+|.++.    ..++.+|+|+|+|+.|++.|+++    +      ++++.+|+.. ++++++||+|++.
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~n  299 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCN  299 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEEC
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEEC
Confidence            345799999999999753    36788999999999999999876    2      5679999987 5667899999999


Q ss_pred             hhhhhcCC--hhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          146 AVLHHLST--ESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       146 ~vl~h~~~--~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ..+|+...  ......++.++.++|||||++++.....
T Consensus       300 ppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~  337 (375)
T 4dcm_A          300 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH  337 (375)
T ss_dssp             CCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             CCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence            88876321  1124578999999999999999986543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.32  E-value=5.1e-12  Score=112.03  Aligned_cols=95  Identities=24%  Similarity=0.233  Sum_probs=78.1

Q ss_pred             CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      .+.++.+|||||||+|.++..     .+...|+|+|+|+.+++.|+++       ++.+..+|+.......+.||+|++.
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  153 (215)
T 2yxe_A           74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTT  153 (215)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEES
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEEC
Confidence            467889999999999997532     2447999999999999999875       4788899985433236789999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .+++|+.         .++.++|||||++++.+...
T Consensus       154 ~~~~~~~---------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          154 AAGPKIP---------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             SBBSSCC---------HHHHHTEEEEEEEEEEESSS
T ss_pred             CchHHHH---------HHHHHHcCCCcEEEEEECCC
Confidence            9999886         36889999999999998764

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.32  E-value=3.4e-12  Score=115.00  Aligned_cols=96  Identities=16%  Similarity=0.244  Sum_probs=74.6

Q ss_pred             CCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHH----HHHHHHc-CCeEEEeeCCC---CCCCCCCccEEEec
Q 018606           79 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSL----IKICVDR-GHEVLVADAVN---LPYRSDFGDAAISI  145 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~----l~~a~~~-~i~~~~~D~~~---l~~~~~~fD~Vi~~  145 (353)
                      +.++.+|||+|||+|.++.    . .++..|+|+|+|+.|    ++.|+.+ ++.++.+|+..   +++.+++||+|++.
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            5678899999999999754    2 356799999999775    4555553 78999999987   45557899999995


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..     ..+....++.++.++|||||++++.+.
T Consensus       155 ~~-----~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          155 VA-----QPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             CC-----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CC-----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            44     323245678899999999999999754

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.31  E-value=1.4e-12  Score=116.61  Aligned_cols=99  Identities=20%  Similarity=0.204  Sum_probs=77.8

Q ss_pred             CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CCC-C----CCC
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPY-R----SDF  138 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-l~~-~----~~~  138 (353)
                      ...++.+|||||||+|..+.    . .++.+|+++|+++.|++.|+++        +++++.+|+.. ++. .    .++
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  134 (221)
T 3u81_A           55 REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT  134 (221)
T ss_dssp             HHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred             HhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCc
Confidence            34467899999999998643    2 3478999999999999999885        37899999855 332 2    268


Q ss_pred             ccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          139 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       139 fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ||+|++....++..+   ...++..+ ++|||||++++....
T Consensus       135 fD~V~~d~~~~~~~~---~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          135 LDMVFLDHWKDRYLP---DTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             CSEEEECSCGGGHHH---HHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             eEEEEEcCCcccchH---HHHHHHhc-cccCCCeEEEEeCCC
Confidence            999999887777654   45677777 999999999987654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.31  E-value=2.7e-12  Score=117.55  Aligned_cols=93  Identities=20%  Similarity=0.124  Sum_probs=77.5

Q ss_pred             CCCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC---CCCccEEEec
Q 018606           80 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGDAAISI  145 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~---~~~fD~Vi~~  145 (353)
                      .++.+|||||||+|...    ...++.+|+|+|+|+.+++.|+++       +++++++|+.+++..   +++||+|++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            46789999999999863    236788999999999999999876       478999999887643   4799999997


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ++    .+   ...++..+.++|||||++++..-
T Consensus       159 a~----~~---~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          159 AV----AP---LCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             SS----CC---HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             Cc----CC---HHHHHHHHHHHcCCCeEEEEEeC
Confidence            54    34   57899999999999999988653

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.31  E-value=3e-14  Score=128.89  Aligned_cols=100  Identities=14%  Similarity=0.104  Sum_probs=81.5

Q ss_pred             HHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      .+....++.+|||+|||+|.++..  ..+..|+|+|+|+.|++.|+++        +++++++|+..++ ++++||+|++
T Consensus        72 ~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~  150 (241)
T 3gdh_A           72 RVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFL  150 (241)
T ss_dssp             HHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred             HhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEE
Confidence            333344789999999999997542  3458999999999999999875        4789999998877 5679999999


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ...++|+...   ...+.++.++|+|||.+++..
T Consensus       151 ~~~~~~~~~~---~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          151 SPPWGGPDYA---TAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             CCCCSSGGGG---GSSSBCTTTSCSSCHHHHHHH
T ss_pred             CCCcCCcchh---hhHHHHHHhhcCCcceeHHHH
Confidence            9999988763   347788999999999966553

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.30  E-value=3.5e-12  Score=122.13  Aligned_cols=99  Identities=21%  Similarity=0.219  Sum_probs=79.1

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHH------cCCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVD------RGHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~------~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      +.++.+|||||||+|.++.    ..++..++++|++ .++..++.      .+++++.+|+. .+++  .||+|++..++
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vl  257 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRIL  257 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCG
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhc
Confidence            5677899999999999763    3688899999994 44442111      14789999997 4454  89999999999


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ||+++.+ ...+|++++++|||||+++|..+...
T Consensus       258 h~~~d~~-~~~~L~~~~~~LkpgG~l~i~e~~~~  290 (348)
T 3lst_A          258 HNWGDED-SVRILTNCRRVMPAHGRVLVIDAVVP  290 (348)
T ss_dssp             GGSCHHH-HHHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred             cCCCHHH-HHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            9998754 47899999999999999999887543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.30  E-value=4.5e-12  Score=109.33  Aligned_cols=97  Identities=15%  Similarity=0.132  Sum_probs=78.8

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCC-CCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRS-DFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~-~~fD~Vi~~~  146 (353)
                      .+.++.+|||+|||+|.++..  ..+..|+|+|+|+.+++.|+++        ++.+..+|+.. +++. +.||+|++..
T Consensus        30 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~  108 (192)
T 1l3i_A           30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGG  108 (192)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESC
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECC
Confidence            467889999999999997532  2337999999999999999884        56788888876 3333 5899999988


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ++++      ...++.++.++|+|||.+++..+..
T Consensus       109 ~~~~------~~~~l~~~~~~l~~gG~l~~~~~~~  137 (192)
T 1l3i_A          109 SGGE------LQEILRIIKDKLKPGGRIIVTAILL  137 (192)
T ss_dssp             CTTC------HHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             chHH------HHHHHHHHHHhcCCCcEEEEEecCc
Confidence            7754      4678999999999999999988754

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.30  E-value=8.1e-12  Score=107.00  Aligned_cols=95  Identities=19%  Similarity=0.191  Sum_probs=79.6

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .+.++.+|||+|||+|.++..  .++..++|+|+|+.+++.|+++       +++++.+|+.. +++++.||+|++..+ 
T Consensus        32 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~-  109 (183)
T 2yxd_A           32 NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT-  109 (183)
T ss_dssp             CCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC-
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc-
Confidence            456788999999999997532  4778999999999999999886       47889999887 666789999999887 


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                         ..   ...++.++.++  |||.+++..+..+
T Consensus       110 ---~~---~~~~l~~~~~~--~gG~l~~~~~~~~  135 (183)
T 2yxd_A          110 ---KN---IEKIIEILDKK--KINHIVANTIVLE  135 (183)
T ss_dssp             ---SC---HHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred             ---cc---HHHHHHHHhhC--CCCEEEEEecccc
Confidence               33   67889999998  9999999987643

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.30  E-value=6.5e-12  Score=112.29  Aligned_cols=101  Identities=21%  Similarity=0.197  Sum_probs=80.4

Q ss_pred             HHHHHh-CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCCC
Q 018606           72 VATFLN-SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLP  133 (353)
Q Consensus        72 ~~~~l~-~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l~  133 (353)
                      +...+. .+.++.+|||||||+|.++..     .+...|+|+|+++.+++.|+++            ++.++.+|+...+
T Consensus        67 ~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (226)
T 1i1n_A           67 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY  146 (226)
T ss_dssp             HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred             HHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc
Confidence            334443 467889999999999997532     3457999999999999998764            4788999988766


Q ss_pred             CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       134 ~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ...+.||+|++...++++.         .++.++|||||++++.+...
T Consensus       147 ~~~~~fD~i~~~~~~~~~~---------~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          147 AEEAPYDAIHVGAAAPVVP---------QALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             GGGCCEEEEEECSBBSSCC---------HHHHHTEEEEEEEEEEESCT
T ss_pred             ccCCCcCEEEECCchHHHH---------HHHHHhcCCCcEEEEEEecC
Confidence            5577899999998877654         46789999999999998654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.30  E-value=9.2e-13  Score=134.47  Aligned_cols=103  Identities=23%  Similarity=0.302  Sum_probs=83.2

Q ss_pred             CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC--CCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL--PYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l--~~~~~~fD~Vi~~~v  147 (353)
                      +..+.+|||||||.|.++.  ...|+.|+|||+|+.+|+.|+.+       ++++.+++++++  ++.++.||+|+|..+
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~  143 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV  143 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence            3456799999999999865  25688999999999999999875       368899999887  466789999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      |+|++++.. ...+..+.+.|+++|..++..+...
T Consensus       144 ~ehv~~~~~-~~~~~~~~~tl~~~~~~~~~~~~~~  177 (569)
T 4azs_A          144 FHHIVHLHG-IDEVKRLLSRLADVTQAVILELAVK  177 (569)
T ss_dssp             HHHHHHHHC-HHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred             hhcCCCHHH-HHHHHHHHHHhccccceeeEEeccc
Confidence            999987542 3445667888899988887766543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.29  E-value=5.5e-12  Score=119.32  Aligned_cols=95  Identities=17%  Similarity=0.166  Sum_probs=79.2

Q ss_pred             CCCCCCEEEEECCcccccccc----CC-CcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL----NP-DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~----~~-~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      .+.++.+|||||||+|.++..    .+ ..+|+|+|+|+.+++.|+++       ++++..+|+...+..++.||+|++.
T Consensus        72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~  151 (317)
T 1dl5_A           72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT  151 (317)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEc
Confidence            467889999999999997532    23 46899999999999999876       4789999998865556889999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .+++|+.         .++.++|||||++++.+...
T Consensus       152 ~~~~~~~---------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          152 VGVDEVP---------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             SBBSCCC---------HHHHHHEEEEEEEEEEBCBG
T ss_pred             CCHHHHH---------HHHHHhcCCCcEEEEEECCC
Confidence            9999886         35788999999999997543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.29  E-value=1e-12  Score=111.72  Aligned_cols=100  Identities=16%  Similarity=0.120  Sum_probs=76.1

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCC-C-C--CCCCccEEEech
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNL-P-Y--RSDFGDAAISIA  146 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l-~-~--~~~~fD~Vi~~~  146 (353)
                      ++++.+|||+|||+|.++..  ..+..++|+|+|+.|++.|+++      +++++++|+.+. + +  ..++||+|++..
T Consensus        39 ~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           39 YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            34678999999999997542  2344699999999999999886      588999998763 2 1  134799999988


Q ss_pred             hhhhcCChhHHHHHHHHHH--hccccCcEEEEEEcCCCc
Q 018606          147 VLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~--rvLkpgG~lli~~~~~~~  183 (353)
                      .++  ..   ...++..+.  ++|+|||.+++.+.....
T Consensus       119 ~~~--~~---~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          119 PYA--MD---LAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             CTT--SC---TTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             CCc--hh---HHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            766  33   234556666  999999999999876544

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.28  E-value=3.7e-12  Score=116.79  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=78.9

Q ss_pred             HhCCC-CCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCCccE
Q 018606           76 LNSLP-SGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDA  141 (353)
Q Consensus        76 l~~l~-~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~--~~~~~fD~  141 (353)
                      +..+. ++.+|||+|||+|.++.   ......|+|+|+++.+++.|+++        +++++++|+..++  +++++||+
T Consensus        43 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~  122 (259)
T 3lpm_A           43 FSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADI  122 (259)
T ss_dssp             HCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEE
T ss_pred             HhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccE
Confidence            33556 78999999999999753   22233999999999999999886        3789999998875  55789999


Q ss_pred             EEechhhhhc-----CCh------------hHHHHHHHHHHhccccCcEEEEEEc
Q 018606          142 AISIAVLHHL-----STE------------SRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       142 Vi~~~vl~h~-----~~~------------e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      |+++-.+...     .+.            .....++..+.++|||||++++...
T Consensus       123 Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  177 (259)
T 3lpm_A          123 VTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR  177 (259)
T ss_dssp             EEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence            9996443222     111            2246799999999999999999653

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.28  E-value=5.1e-12  Score=113.03  Aligned_cols=100  Identities=19%  Similarity=0.267  Sum_probs=80.9

Q ss_pred             HHHHHh-CCCCCCEEEEECCcccccccc-----C----CCcEEEEEeCCHHHHHHHHHc------------CCeEEEeeC
Q 018606           72 VATFLN-SLPSGSLVLDAGCGNGKYLGL-----N----PDCFFVGCDISPSLIKICVDR------------GHEVLVADA  129 (353)
Q Consensus        72 ~~~~l~-~l~~~~~VLDvGCG~G~~~~~-----~----~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~  129 (353)
                      +...+. .+.++.+|||||||+|.++..     .    +...|+|+|+++.+++.|+++            +++++.+|+
T Consensus        70 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  149 (227)
T 2pbf_A           70 SLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI  149 (227)
T ss_dssp             HHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG
T ss_pred             HHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh
Confidence            344444 567889999999999987531     2    457999999999999999875            378899999


Q ss_pred             CCCC----CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          130 VNLP----YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       130 ~~l~----~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ....    ...+.||+|++..+++++.         .++.++|+|||++++.++.
T Consensus       150 ~~~~~~~~~~~~~fD~I~~~~~~~~~~---------~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          150 YQVNEEEKKELGLFDAIHVGASASELP---------EILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             GGCCHHHHHHHCCEEEEEECSBBSSCC---------HHHHHHEEEEEEEEEEEEE
T ss_pred             HhcccccCccCCCcCEEEECCchHHHH---------HHHHHhcCCCcEEEEEEcc
Confidence            8865    5567899999999888653         5678999999999999875

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.27  E-value=1.4e-11  Score=111.98  Aligned_cols=97  Identities=14%  Similarity=0.150  Sum_probs=81.8

Q ss_pred             CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      .+.++.+|||+|||+|.++.    . .++..|+++|+++.+++.|+++        ++++..+|+...+++++.||+|++
T Consensus        93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~  172 (258)
T 2pwy_A           93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVAL  172 (258)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEE
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEE
Confidence            46788999999999998753    2 4578999999999999999875        468899999988887889999998


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                           ++++   +..++.++.++|+|||++++.....+
T Consensus       173 -----~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~  202 (258)
T 2pwy_A          173 -----DLME---PWKVLEKAALALKPDRFLVAYLPNIT  202 (258)
T ss_dssp             -----ESSC---GGGGHHHHHHHEEEEEEEEEEESCHH
T ss_pred             -----CCcC---HHHHHHHHHHhCCCCCEEEEEeCCHH
Confidence                 3455   45789999999999999999987643

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.27  E-value=1.1e-11  Score=112.28  Aligned_cols=97  Identities=20%  Similarity=0.169  Sum_probs=72.4

Q ss_pred             CCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHH----HHHHHc-CCeEEEeeCCCCC---CCCCCccEEEec
Q 018606           79 LPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLI----KICVDR-GHEVLVADAVNLP---YRSDFGDAAISI  145 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l----~~a~~~-~i~~~~~D~~~l~---~~~~~fD~Vi~~  145 (353)
                      +.+|.+|||+|||+|.++.     ..+.+.|+|+|+|+.|+    +.|+++ ++.++.+|+....   ...+.||+|++.
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d  153 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD  153 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence            5689999999999999753     25678999999999875    445544 8899999998643   124689999997


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ...   ++  ....++..+.++|||||+|+++...
T Consensus       154 ~a~---~~--~~~il~~~~~~~LkpGG~lvisik~  183 (232)
T 3id6_C          154 IAQ---PD--QTDIAIYNAKFFLKVNGDMLLVIKA  183 (232)
T ss_dssp             CCC---TT--HHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             CCC---hh--HHHHHHHHHHHhCCCCeEEEEEEcc
Confidence            543   23  2334455666699999999999643

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.27  E-value=3.4e-12  Score=112.85  Aligned_cols=97  Identities=11%  Similarity=0.069  Sum_probs=76.3

Q ss_pred             CCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CCCCCCCccEEEechhhh
Q 018606           81 SGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-l~~~~~~fD~Vi~~~vl~  149 (353)
                      ++.+|||+|||+|.++.  ...+ ..|+|+|+|+.|++.|+++       +++++++|+.. ++..++.||+|++...++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            56899999999999754  2233 4999999999999999875       46899999877 455667899999987643


Q ss_pred             hcCChhHHHHHHHHHHh--ccccCcEEEEEEcCC
Q 018606          150 HLSTESRRKKAIEELVR--VVKKGSLVLITVWAV  181 (353)
Q Consensus       150 h~~~~e~~~~~l~el~r--vLkpgG~lli~~~~~  181 (353)
                       ...   ...++..+.+  +|+|||++++.....
T Consensus       134 -~~~---~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          134 -RGL---LEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             -TTT---HHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             -CCc---HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence             333   5677888865  599999999887653

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.26  E-value=3.9e-12  Score=121.70  Aligned_cols=100  Identities=23%  Similarity=0.264  Sum_probs=80.6

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      .++.+|||+|||+|.++.    ..+...|+|+|+|+.|++.|+++      .++++.+|+...+  +++||+|++..++|
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~  272 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGRFDMIISNPPFH  272 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSCEEEEEECCCCC
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCCeeEEEECCCcc
Confidence            356799999999999753    35667999999999999999886      3578888887654  67899999999887


Q ss_pred             hcC--ChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          150 HLS--TESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       150 h~~--~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +..  ..+....+++++.++|||||.+++.....
T Consensus       273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            522  12236789999999999999999987543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.26  E-value=7.2e-12  Score=115.68  Aligned_cols=98  Identities=17%  Similarity=0.280  Sum_probs=82.1

Q ss_pred             CCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCCccEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      .+.++.+|||+|||+|.++.     ..++..|+++|+++.+++.|+++          +++++.+|+...+++++.||+|
T Consensus        96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v  175 (280)
T 1i9g_A           96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRA  175 (280)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEE
T ss_pred             CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEE
Confidence            46788999999999999753     24578999999999999998864          3688999999888878899999


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ++     ++++   +..++.++.++|+|||++++.+...++
T Consensus       176 ~~-----~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~  208 (280)
T 1i9g_A          176 VL-----DMLA---PWEVLDAVSRLLVAGGVLMVYVATVTQ  208 (280)
T ss_dssp             EE-----ESSC---GGGGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred             EE-----CCcC---HHHHHHHHHHhCCCCCEEEEEeCCHHH
Confidence            98     3444   457899999999999999999887544

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.26  E-value=7.5e-12  Score=113.93  Aligned_cols=97  Identities=18%  Similarity=0.307  Sum_probs=80.8

Q ss_pred             CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------C-CeEEEeeCCCCCCCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------G-HEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~-i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      .+.++.+|||+|||+|.++.    . .++..++|+|+++.+++.|+++       + ++++.+|+... +++++||+|++
T Consensus        90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~  168 (255)
T 3mb5_A           90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVIL  168 (255)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEE
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEE
Confidence            56788999999999999753    2 5678999999999999999886       3 78999999864 66788999998


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .     .++   +..++.++.++|+|||++++.....++
T Consensus       169 ~-----~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~  199 (255)
T 3mb5_A          169 D-----LPQ---PERVVEHAAKALKPGGFFVAYTPCSNQ  199 (255)
T ss_dssp             C-----SSC---GGGGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred             C-----CCC---HHHHHHHHHHHcCCCCEEEEEECCHHH
Confidence            3     444   467899999999999999998876543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.26  E-value=7.1e-12  Score=116.00  Aligned_cols=96  Identities=17%  Similarity=0.243  Sum_probs=80.2

Q ss_pred             CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      .+.++.+|||+|||+|.++.    . .++..|+|+|+++.+++.|+++        +++++.+|+.. +++++.||+|++
T Consensus       107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~  185 (275)
T 1yb2_A          107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIA  185 (275)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEE
T ss_pred             CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEE
Confidence            46788999999999998753    2 4678999999999999999875        36788999887 666788999998


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                           ++++   +..+++++.++|||||++++.+...+
T Consensus       186 -----~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~  215 (275)
T 1yb2_A          186 -----DIPD---PWNHVQKIASMMKPGSVATFYLPNFD  215 (275)
T ss_dssp             -----CCSC---GGGSHHHHHHTEEEEEEEEEEESSHH
T ss_pred             -----cCcC---HHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence                 4555   46789999999999999999987643

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.26  E-value=1.4e-11  Score=112.28  Aligned_cols=98  Identities=13%  Similarity=0.184  Sum_probs=76.9

Q ss_pred             CCCEEEEECCccccccc----c--CCCcEEEEEeCCHHHHHHHHHc---C------------------------------
Q 018606           81 SGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR---G------------------------------  121 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~--~~~~~v~gvD~S~~~l~~a~~~---~------------------------------  121 (353)
                      ++.+|||+|||+|.++.    .  .++..|+|+|+|+.|++.|+++   .                              
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            46799999999999753    2  3467999999999999999854   2                              


Q ss_pred             ---Ce-------------EEEeeCCCCCC-----CCCCccEEEechhhhhcCC------hhHHHHHHHHHHhccccCcEE
Q 018606          122 ---HE-------------VLVADAVNLPY-----RSDFGDAAISIAVLHHLST------ESRRKKAIEELVRVVKKGSLV  174 (353)
Q Consensus       122 ---i~-------------~~~~D~~~l~~-----~~~~fD~Vi~~~vl~h~~~------~e~~~~~l~el~rvLkpgG~l  174 (353)
                         ++             +.++|+.....     ....||+|++...+++...      .+....++.++.++|+|||++
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence               45             99999887431     3458999999876666543      234678999999999999999


Q ss_pred             EEEE
Q 018606          175 LITV  178 (353)
Q Consensus       175 li~~  178 (353)
                      ++..
T Consensus       211 ~~~~  214 (250)
T 1o9g_A          211 AVTD  214 (250)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            9843

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.25  E-value=5.6e-12  Score=113.77  Aligned_cols=95  Identities=15%  Similarity=0.145  Sum_probs=76.9

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-CCCCCccEEEe
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YRSDFGDAAIS  144 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~~~~~fD~Vi~  144 (353)
                      +.++.+|||||||+|..+.    ..++..|+|+|+++.+++.|+++        +++++.+|+... + ..+++||+|++
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            4567899999999999753    24688999999999999999875        478999999774 3 33689999997


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ...   ...   ...+++++.++|||||++++...
T Consensus       149 ~~~---~~~---~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          149 DAA---KAQ---SKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             ETT---SSS---HHHHHHHHGGGEEEEEEEEEECT
T ss_pred             cCc---HHH---HHHHHHHHHHhcCCCeEEEEeeC
Confidence            653   222   56799999999999999988643

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.25  E-value=3.3e-12  Score=112.29  Aligned_cols=102  Identities=17%  Similarity=0.210  Sum_probs=75.6

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-------C----CCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-------S----DFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~-------~----~~fD~Vi~  144 (353)
                      .+.++.+|||+|||+|.++..  ..+..|+|+|+++..    ...+++++++|+...+..       .    +.||+|++
T Consensus        22 ~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~----~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vls   97 (191)
T 3dou_A           22 VVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME----EIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVS   97 (191)
T ss_dssp             CSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC----CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEE
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc----cCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEec
Confidence            457889999999999997642  337899999999742    113799999999886521       1    48999999


Q ss_pred             chh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          145 IAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       145 ~~v--------l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ...        ..+....+....++..+.++|||||.|++.+|..+.
T Consensus        98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~  144 (191)
T 3dou_A           98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM  144 (191)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred             CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence            542        222222233467899999999999999999987554

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.24  E-value=1.8e-11  Score=113.27  Aligned_cols=98  Identities=17%  Similarity=0.234  Sum_probs=78.0

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec---
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI---  145 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~---  145 (353)
                      .++.+|||+|||+|.++.    ..++..|+|+|+|+.+++.|+++       +++++++|+... ++++.||+|++.   
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy  186 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPY  186 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCC
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCC
Confidence            567899999999999753    35778999999999999999876       478899998763 446789999997   


Q ss_pred             ----------hhhhhcCCh---------hHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 ----------AVLHHLSTE---------SRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ----------~vl~h~~~~---------e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                                .+++|-+..         +....++.++.++|+|||++++..
T Consensus       187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                      344443321         225789999999999999999874

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.24  E-value=1.1e-11  Score=113.10  Aligned_cols=102  Identities=14%  Similarity=0.069  Sum_probs=78.3

Q ss_pred             HHHHhCCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CCCC--C
Q 018606           73 ATFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPYR--S  136 (353)
Q Consensus        73 ~~~l~~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-l~~~--~  136 (353)
                      ...+..+.++.+|||||||+|..+.    ..+ +.+|+|+|+++.+++.|+++        +++++.+|+.. ++..  .
T Consensus        55 l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~  134 (248)
T 3tfw_A           55 LALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGEC  134 (248)
T ss_dssp             HHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSC
T ss_pred             HHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCC
Confidence            3334344577899999999999743    234 78999999999999999886        47899999876 3322  3


Q ss_pred             CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          137 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++||+|++....      .....++.++.++|||||++++....
T Consensus       135 ~~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          135 PAFDLIFIDADK------PNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             CCCSEEEECSCG------GGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             CCeEEEEECCch------HHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            489999986532      12567899999999999999887644

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.24  E-value=1.3e-11  Score=112.30  Aligned_cols=96  Identities=21%  Similarity=0.335  Sum_probs=75.5

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc---------------CCeEEEeeCCC-CC--CC
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---------------GHEVLVADAVN-LP--YR  135 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~---------------~i~~~~~D~~~-l~--~~  135 (353)
                      .+.++.+|||||||+|.++.    ..++..|+|+|+|+.|++.|+++               ++.++.+|+.. ++  ++
T Consensus        46 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~  125 (246)
T 2vdv_E           46 QMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE  125 (246)
T ss_dssp             CBSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred             cCCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence            34567899999999999753    35678999999999999988652               57899999987 56  67


Q ss_pred             CCCccEEEechhhhhcCChhH----------HHHHHHHHHhccccCcEEEEEE
Q 018606          136 SDFGDAAISIAVLHHLSTESR----------RKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       136 ~~~fD~Vi~~~vl~h~~~~e~----------~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .+++|.|+...     +++.-          ...++.++.++|+|||.|++.+
T Consensus       126 ~~~~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          126 KGQLSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             TTCEEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            78999998542     33210          0479999999999999999965

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.24  E-value=6.8e-12  Score=120.52  Aligned_cols=97  Identities=18%  Similarity=0.198  Sum_probs=82.4

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE  154 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~  154 (353)
                      .++.+|||||||+|.++.    ..++.+++++|+ +.+++.|++. +++++.+|+.. +++  .||+|++..+|||+++.
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~  267 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDE  267 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHH
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHH
Confidence            456899999999999754    367889999999 7898887754 68999999987 665  49999999999999875


Q ss_pred             hHHHHHHHHHHhcccc---CcEEEEEEcCC
Q 018606          155 SRRKKAIEELVRVVKK---GSLVLITVWAV  181 (353)
Q Consensus       155 e~~~~~l~el~rvLkp---gG~lli~~~~~  181 (353)
                      + ...+|+++.++|+|   ||+++|..+..
T Consensus       268 ~-~~~~l~~~~~~L~p~~~gG~l~i~e~~~  296 (358)
T 1zg3_A          268 Q-SLKILKNSKEAISHKGKDGKVIIIDISI  296 (358)
T ss_dssp             H-HHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred             H-HHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence            4 45999999999999   99999987654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.24  E-value=1.7e-11  Score=112.69  Aligned_cols=103  Identities=15%  Similarity=0.024  Sum_probs=78.5

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--C---------CeEEEeeCCCC-------CCC
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--G---------HEVLVADAVNL-------PYR  135 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--~---------i~~~~~D~~~l-------~~~  135 (353)
                      ...++.+|||+|||+|.++.    ..++..|+|+|+++.+++.|+++  .         ++++++|+..+       +++
T Consensus        33 ~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~  112 (260)
T 2ozv_A           33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP  112 (260)
T ss_dssp             CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred             cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence            45577899999999999743    35678999999999999999875  2         67899999887       356


Q ss_pred             CCCccEEEechhhhhc---------------CChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          136 SDFGDAAISIAVLHHL---------------STESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       136 ~~~fD~Vi~~~vl~h~---------------~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +++||+|++.-.+...               ........++..+.++|||||++++....
T Consensus       113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  172 (260)
T 2ozv_A          113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP  172 (260)
T ss_dssp             TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence            7899999997322211               00111568899999999999999987543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.24  E-value=9e-12  Score=111.74  Aligned_cols=100  Identities=20%  Similarity=0.252  Sum_probs=79.4

Q ss_pred             HHHHHHh-CCCCCCEEEEECCcccccccc----CC------CcEEEEEeCCHHHHHHHHHc------------CCeEEEe
Q 018606           71 KVATFLN-SLPSGSLVLDAGCGNGKYLGL----NP------DCFFVGCDISPSLIKICVDR------------GHEVLVA  127 (353)
Q Consensus        71 ~~~~~l~-~l~~~~~VLDvGCG~G~~~~~----~~------~~~v~gvD~S~~~l~~a~~~------------~i~~~~~  127 (353)
                      .+...+. .+.++.+|||||||+|.++..    ..      ...|+|+|+++.+++.|+++            +++++.+
T Consensus        73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  152 (227)
T 1r18_A           73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  152 (227)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC
Confidence            3344443 467889999999999997532    11      25999999999999998764            5788999


Q ss_pred             eCCCCCCCC-CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          128 DAVNLPYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       128 D~~~l~~~~-~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      |+.. ++++ +.||+|++..+++++.         .++.++|||||++++.+..
T Consensus       153 d~~~-~~~~~~~fD~I~~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          153 DGRK-GYPPNAPYNAIHVGAAAPDTP---------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             CGGG-CCGGGCSEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEEESC
T ss_pred             Cccc-CCCcCCCccEEEECCchHHHH---------HHHHHHhcCCCEEEEEEec
Confidence            9887 4444 7899999999988765         4688999999999999864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.23  E-value=2.7e-11  Score=108.38  Aligned_cols=94  Identities=18%  Similarity=0.200  Sum_probs=73.6

Q ss_pred             CCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCC---CCCCCccEEEec
Q 018606           79 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP---YRSDFGDAAISI  145 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~---~~~~~fD~Vi~~  145 (353)
                      +.++.+|||+|||+|.++.    . .++..|+|+|+|+.|++.++++     +++++.+|+....   ...++||+|++.
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            4678899999999999753    2 3457999999999998887664     6889999998732   124589999976


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      ..     .......++.++.++|||||++++.
T Consensus       151 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          151 VA-----QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            54     2222345699999999999999998

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.23  E-value=1.8e-11  Score=115.93  Aligned_cols=108  Identities=13%  Similarity=0.158  Sum_probs=81.6

Q ss_pred             HhCCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           76 LNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      +..+.++.+|||+|||+|..+.    . .+...|+|+|+|+.+++.++++       ++.++++|+..++..++.||+|+
T Consensus       113 ~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il  192 (315)
T 1ixk_A          113 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKIL  192 (315)
T ss_dssp             HHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEE
T ss_pred             HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEE
Confidence            3356788999999999999643    2 3457999999999999999876       46888999988765567899999


Q ss_pred             ec------hhhhhcCCh------h-------HHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          144 SI------AVLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       144 ~~------~vl~h~~~~------e-------~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +.      +++++.++.      +       ....+|.++.++|||||++++++.....
T Consensus       193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~  251 (315)
T 1ixk_A          193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP  251 (315)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred             EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence            83      334433221      0       1258899999999999999998876543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.23  E-value=2.3e-12  Score=119.18  Aligned_cols=98  Identities=18%  Similarity=0.121  Sum_probs=74.1

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc---------CCeEE--EeeCCCCCCCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------GHEVL--VADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~---------~i~~~--~~D~~~l~~~~~~fD~Vi~  144 (353)
                      .+.++.+|||||||+|.++..  .. ..|+|+|+++ |+..+++.         ++.++  ++|+..++  +++||+|+|
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~s  146 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMC  146 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEE
Confidence            467889999999999998642  22 7899999998 64333222         46788  88999876  678999999


Q ss_pred             chhhhhcCChh----HHHHHHHHHHhccccCc--EEEEEEcC
Q 018606          145 IAVLHHLSTES----RRKKAIEELVRVVKKGS--LVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e----~~~~~l~el~rvLkpgG--~lli~~~~  180 (353)
                      ..+ ++.....    +...+|.++.++|||||  .|++.++.
T Consensus       147 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          147 DVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             eCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            876 4443321    11248899999999999  99998887

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.23  E-value=8.2e-12  Score=112.34  Aligned_cols=97  Identities=16%  Similarity=0.143  Sum_probs=78.7

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCC--CCCccEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYR--SDFGDAA  142 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~~~--~~~fD~V  142 (353)
                      ...++.+|||||||+|.++.    ..++..|+++|+++.+++.|+++        ++.++.+|+... +..  ++.||+|
T Consensus        51 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  130 (233)
T 2gpy_A           51 KMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL  130 (233)
T ss_dssp             HHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred             hccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEE
Confidence            34567899999999998653    35678999999999999999886        378888998774 432  5789999


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++....+   .   ...++.++.++|+|||++++..+.
T Consensus       131 ~~~~~~~---~---~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A          131 FIDAAKG---Q---YRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             EEEGGGS---C---HHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             EECCCHH---H---HHHHHHHHHHHcCCCeEEEEEcCC
Confidence            9987653   3   578999999999999999997543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.21  E-value=1.1e-11  Score=115.99  Aligned_cols=93  Identities=13%  Similarity=0.184  Sum_probs=69.9

Q ss_pred             CCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHcCCeEE---EeeCCCCC---CCCCCccEEEechhhhh
Q 018606           80 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVL---VADAVNLP---YRSDFGDAAISIAVLHH  150 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~~i~~~---~~D~~~l~---~~~~~fD~Vi~~~vl~h  150 (353)
                      .++.+|||||||||.++..   .....|+|+|+|+.|++.+.+..-++.   ..++..++   ++..+||+|++..++++
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s  163 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS  163 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC
T ss_pred             ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh
Confidence            3578999999999998742   333599999999999998665433332   23444433   33456999999888775


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +      ..+|.++.|+|+|||.+++.+
T Consensus       164 l------~~vL~e~~rvLkpGG~lv~lv  185 (291)
T 3hp7_A          164 L------NLILPALAKILVDGGQVVALV  185 (291)
T ss_dssp             G------GGTHHHHHHHSCTTCEEEEEE
T ss_pred             H------HHHHHHHHHHcCcCCEEEEEE
Confidence            5      468999999999999999874

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.21  E-value=1.4e-11  Score=111.11  Aligned_cols=93  Identities=20%  Similarity=0.267  Sum_probs=75.7

Q ss_pred             CCCCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCC-CccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSD-FGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~-~fD~Vi~~  145 (353)
                      .+.++.+|||||||+|.++..    .+ ..|+|+|+++.+++.|+++       ++.+..+|+ ..++++. .||+|++.
T Consensus        88 ~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~  165 (235)
T 1jg1_A           88 NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVT  165 (235)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEEC
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEEC
Confidence            567888999999999997542    23 7999999999999999885       468888997 3444443 59999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .+++++..         ++.++|+|||++++.+...
T Consensus       166 ~~~~~~~~---------~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          166 AGAPKIPE---------PLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             SBBSSCCH---------HHHHTEEEEEEEEEEECSS
T ss_pred             CcHHHHHH---------HHHHhcCCCcEEEEEEecC
Confidence            99988763         5789999999999998754

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.21  E-value=1.8e-11  Score=122.43  Aligned_cols=96  Identities=17%  Similarity=0.108  Sum_probs=79.6

Q ss_pred             CCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           80 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .++.+|||||||+|.++.   ..+..+|+|+|+|+ |++.|+++        +++++.+|+..++++ +.||+|++..++
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~  234 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG  234 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCH
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCch
Confidence            467899999999999753   24556999999998 98888764        478999999988764 589999999888


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +|+.... ....+.++.++|||||++++..
T Consensus       235 ~~~~~e~-~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          235 YMLFNER-MLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             HHHTCHH-HHHHHHHGGGGEEEEEEEESCE
T ss_pred             HhcCcHH-HHHHHHHHHHhcCCCCEEEEEe
Confidence            8887654 5677889999999999998654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.21  E-value=1.7e-11  Score=113.95  Aligned_cols=97  Identities=15%  Similarity=0.141  Sum_probs=78.3

Q ss_pred             hCCCCCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           77 NSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      ..+.++.+|||+|||+|.++..  ..+. .|+|+|+|+.|++.|+++        .++++++|+..++. +++||+|++.
T Consensus       121 ~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~  199 (278)
T 2frn_A          121 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMG  199 (278)
T ss_dssp             HHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEEC
T ss_pred             HhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEEC
Confidence            3467789999999999997532  2222 799999999999999876        26799999999876 7899999985


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ..    ..   ...++.++.++|+|||++++..+..
T Consensus       200 ~p----~~---~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          200 YV----VR---THEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             CC----SS---GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             Cc----hh---HHHHHHHHHHHCCCCeEEEEEEeec
Confidence            32    22   3568999999999999999998764

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.21  E-value=3.2e-12  Score=118.90  Aligned_cols=98  Identities=13%  Similarity=0.118  Sum_probs=74.2

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc---------CCeEE--EeeCCCCCCCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------GHEVL--VADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~---------~i~~~--~~D~~~l~~~~~~fD~Vi~  144 (353)
                      .+.++.+|||||||+|.++..  .. ..|+|+|+|+ |+..++++         ++.++  ++|+..++  +++||+|+|
T Consensus        79 ~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvs  154 (276)
T 2wa2_A           79 GVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLC  154 (276)
T ss_dssp             SCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred             CCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEE
Confidence            356789999999999998642  22 6899999998 65444322         46788  88998876  678999999


Q ss_pred             chhhhhcCChh----HHHHHHHHHHhccccCc--EEEEEEcC
Q 018606          145 IAVLHHLSTES----RRKKAIEELVRVVKKGS--LVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e----~~~~~l~el~rvLkpgG--~lli~~~~  180 (353)
                      ..+ ++.....    +...+|.++.++|||||  .|++.++.
T Consensus       155 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          155 DIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            877 4433321    11247999999999999  99998887

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.21  E-value=5.9e-12  Score=114.29  Aligned_cols=93  Identities=18%  Similarity=0.185  Sum_probs=75.3

Q ss_pred             CCCEEEEECCccccccc----c----CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCC---CCCC-CCccEEEech
Q 018606           81 SGSLVLDAGCGNGKYLG----L----NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNL---PYRS-DFGDAAISIA  146 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~----~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l---~~~~-~~fD~Vi~~~  146 (353)
                      ++.+|||||||+|..+.    .    .++.+|+|+|+|+.|++.|+..  +++++++|+...   +... .+||+|++..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            45799999999999643    2    4678999999999999888753  689999999884   5433 4799999876


Q ss_pred             hhhhcCChhHHHHHHHHHHh-ccccCcEEEEEEc
Q 018606          147 VLHHLSTESRRKKAIEELVR-VVKKGSLVLITVW  179 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~r-vLkpgG~lli~~~  179 (353)
                      .  |. .   ...+|.++.+ +|||||++++..+
T Consensus       161 ~--~~-~---~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          161 A--HA-N---TFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             S--CS-S---HHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             c--hH-h---HHHHHHHHHHhhCCCCCEEEEEeC
Confidence            5  32 3   5789999997 9999999999765

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.20  E-value=1.7e-11  Score=108.49  Aligned_cols=93  Identities=17%  Similarity=0.116  Sum_probs=73.8

Q ss_pred             CCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCCccEEEe
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAIS  144 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~~~~~~fD~Vi~  144 (353)
                      ..++.+|||||||+|..+.    ..+ +.+|+++|+|+.+++.|+++        .++++.+|+... +..++ ||+|++
T Consensus        54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~  132 (210)
T 3c3p_A           54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFM  132 (210)
T ss_dssp             HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEE
T ss_pred             hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEE
Confidence            3456799999999998643    234 78999999999999999875        378999998753 44456 999998


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ...   ...   ...+++++.++|||||++++..
T Consensus       133 ~~~---~~~---~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          133 DCD---VFN---GADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             ETT---TSC---HHHHHHHHGGGEEEEEEEEEES
T ss_pred             cCC---hhh---hHHHHHHHHHhcCCCeEEEEEC
Confidence            743   223   5789999999999999998864

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.19  E-value=1.2e-11  Score=113.44  Aligned_cols=96  Identities=19%  Similarity=0.138  Sum_probs=77.3

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      +.++.+|||+|||+|.++..  ..+..|+|+|+++.+++.|+++    +  +++..+|+... ++++.||+|++....++
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~~  196 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAEL  196 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHHH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHHH
Confidence            56789999999999997532  2344999999999999999886    3  78888887762 44678999999765543


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                            ...++.++.++|+|||+++++.+..
T Consensus       197 ------~~~~l~~~~~~LkpgG~lils~~~~  221 (254)
T 2nxc_A          197 ------HAALAPRYREALVPGGRALLTGILK  221 (254)
T ss_dssp             ------HHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred             ------HHHHHHHHHHHcCCCCEEEEEeecc
Confidence                  4578999999999999999986543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.19  E-value=3e-11  Score=115.02  Aligned_cols=98  Identities=15%  Similarity=0.166  Sum_probs=76.1

Q ss_pred             CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc------------------CCeEEEeeCCCC--
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR------------------GHEVLVADAVNL--  132 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~------------------~i~~~~~D~~~l--  132 (353)
                      .+.++.+|||+|||+|.++.    . .+...|+|+|+++.+++.|+++                  +++++.+|+...  
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~  181 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  181 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence            56789999999999999753    2 4558999999999999999874                  478899999886  


Q ss_pred             CCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          133 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       133 ~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +++++.||+|++..     ..   +..++.++.++|+|||++++..+..++
T Consensus       182 ~~~~~~fD~V~~~~-----~~---~~~~l~~~~~~LkpgG~lv~~~~~~~~  224 (336)
T 2b25_A          182 DIKSLTFDAVALDM-----LN---PHVTLPVFYPHLKHGGVCAVYVVNITQ  224 (336)
T ss_dssp             ------EEEEEECS-----SS---TTTTHHHHGGGEEEEEEEEEEESSHHH
T ss_pred             ccCCCCeeEEEECC-----CC---HHHHHHHHHHhcCCCcEEEEEeCCHHH
Confidence            46677899999843     33   234799999999999999999887554

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.18  E-value=1.2e-11  Score=107.71  Aligned_cols=103  Identities=20%  Similarity=0.227  Sum_probs=74.2

Q ss_pred             HhCCCCCCEEEEECCccccccc----cCCC---------cEEEEEeCCHHHHHHHHHcCCeEE-EeeCCCCC--------
Q 018606           76 LNSLPSGSLVLDAGCGNGKYLG----LNPD---------CFFVGCDISPSLIKICVDRGHEVL-VADAVNLP--------  133 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~~----~~~~---------~~v~gvD~S~~~l~~a~~~~i~~~-~~D~~~l~--------  133 (353)
                      ...+.++.+|||||||+|.++.    ..+.         ..|+|+|+|+.+    ...+++++ .+|+...+        
T Consensus        17 ~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~   92 (196)
T 2nyu_A           17 HQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEV   92 (196)
T ss_dssp             HCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHh
Confidence            3456788999999999999753    2232         799999999842    01267888 88887643        


Q ss_pred             CCCCCccEEEechhhhh----cCChhH----HHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          134 YRSDFGDAAISIAVLHH----LSTESR----RKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       134 ~~~~~fD~Vi~~~vl~h----~~~~e~----~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +++++||+|++..+++.    ..+...    ...++.++.++|||||++++.++..+
T Consensus        93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  149 (196)
T 2nyu_A           93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS  149 (196)
T ss_dssp             SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred             cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            34568999999654432    222110    14789999999999999999988654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.18  E-value=1.7e-11  Score=110.20  Aligned_cols=92  Identities=8%  Similarity=0.027  Sum_probs=72.9

Q ss_pred             CCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC-C-CCCCCccEEEec
Q 018606           82 GSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNL-P-YRSDFGDAAISI  145 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l-~-~~~~~fD~Vi~~  145 (353)
                      +.+|||||||+|..+.     ..++.+|+++|+++.+++.|+++         +++++.+|+... + +.+++||+|++.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d  136 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ  136 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence            3499999999998642     24578999999999999999875         367888888664 2 346899999987


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ....   .   ...++.++.++|||||++++...
T Consensus       137 ~~~~---~---~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          137 VSPM---D---LKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             CCTT---T---HHHHHHHHHHHEEEEEEEEETTT
T ss_pred             CcHH---H---HHHHHHHHHHHcCCCcEEEEeCC
Confidence            5422   2   56789999999999999998643

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.18  E-value=6.6e-12  Score=121.52  Aligned_cols=95  Identities=21%  Similarity=0.171  Sum_probs=73.8

Q ss_pred             CCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           80 PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .+|.+|||||||+|.+..  +..| .+|+|+|.|+ |++.|++.        .++++.+|++.+.++ +.||+|++-..-
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~  159 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMG  159 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCB
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccc
Confidence            468899999999998742  2344 4899999996 78888764        478999999998875 689999995443


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEE
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLI  176 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli  176 (353)
                      ..+..+.....++....|+|||||+++-
T Consensus       160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          160 YGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             TTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccccchhhhHHHHHHhhCCCCceECC
Confidence            4444333367888999999999999873

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.18  E-value=4e-11  Score=111.10  Aligned_cols=100  Identities=14%  Similarity=0.139  Sum_probs=82.3

Q ss_pred             HHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      .+..+.++.+|||+|||+|.++.    ..+...|+|+|+++.+++.|+++       ++.++.+|+..++. .+.||+|+
T Consensus       113 ~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi  191 (272)
T 3a27_A          113 MAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVI  191 (272)
T ss_dssp             HHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEE
T ss_pred             HHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEE
Confidence            45567889999999999999853    23466999999999999999875       46899999988844 67899999


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +....    .   ...++.++.++|+|||+++++.+...
T Consensus       192 ~d~p~----~---~~~~l~~~~~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          192 MGYVH----K---THKFLDKTFEFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             ECCCS----S---GGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             ECCcc----c---HHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence            87543    2   46789999999999999999987653

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.17  E-value=5.4e-11  Score=117.06  Aligned_cols=97  Identities=18%  Similarity=0.216  Sum_probs=73.0

Q ss_pred             CCCCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHH-------HHc---------CCeEEEeeCCCC--CC-
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKIC-------VDR---------GHEVLVADAVNL--PY-  134 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a-------~~~---------~i~~~~~D~~~l--~~-  134 (353)
                      .+.++.+|||||||+|.++..    .+...|+|+|+++.+++.|       +++         +++++++|....  ++ 
T Consensus       239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~  318 (433)
T 1u2z_A          239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA  318 (433)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccc
Confidence            456889999999999997532    3445899999999998888       543         356777755432  12 


Q ss_pred             -CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          135 -RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       135 -~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                       ..+.||+|++..+++ .+  + +..+|.++.++|||||++++..
T Consensus       319 ~~~~~FDvIvvn~~l~-~~--d-~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          319 ELIPQCDVILVNNFLF-DE--D-LNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             HHGGGCSEEEECCTTC-CH--H-HHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccCCCCEEEEeCccc-cc--c-HHHHHHHHHHhCCCCeEEEEee
Confidence             246899999876662 22  2 6788999999999999998874

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.17  E-value=2.3e-11  Score=108.48  Aligned_cols=101  Identities=14%  Similarity=0.022  Sum_probs=77.1

Q ss_pred             HHHhCCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-CC---
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YR---  135 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~~---  135 (353)
                      ..+....++.+|||||||+|..+.    ..+ +.+|+|+|+++.+++.|+++        +++++.+|+... + +.   
T Consensus        51 ~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  130 (223)
T 3duw_A           51 QLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEK  130 (223)
T ss_dssp             HHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT
T ss_pred             HHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC
Confidence            333344567899999999999753    234 78999999999999999875        378999998653 1 11   


Q ss_pred             CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          136 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       136 ~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .+.||+|++.....      ....++.++.++|+|||++++....
T Consensus       131 ~~~fD~v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          131 YEPFDFIFIDADKQ------NNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             CCCCSEEEECSCGG------GHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             CCCcCEEEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            26799999876532      1567899999999999998887544

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.17  E-value=4.4e-11  Score=114.75  Aligned_cols=104  Identities=16%  Similarity=0.047  Sum_probs=82.6

Q ss_pred             hCCCCCCEEEEECCcccccccc----C-CCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606           77 NSLPSGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~~----~-~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      ....++.+|||+|||+|.++..    . +...++|+|+++.|++.|+++       ++++.++|+.+++.+...||+|++
T Consensus       199 ~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~  278 (354)
T 3tma_A          199 ADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILA  278 (354)
T ss_dssp             TTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEE
T ss_pred             hCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEE
Confidence            3557788999999999998531    2 668999999999999999987       489999999999877778999999


Q ss_pred             chhhhhcCC-----hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLST-----ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~-----~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .-.......     .+....++.++.++|+|||.+++.+..
T Consensus       279 npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          279 NPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             CCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             CCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            543322111     111367899999999999999999875

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.16  E-value=6.2e-11  Score=107.04  Aligned_cols=97  Identities=14%  Similarity=0.115  Sum_probs=78.3

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      .+.++.+|||+|||+|.++..  ..+.+++++|+++.+++.|+++        ++++..+|+....++++.||+|++.  
T Consensus        88 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~--  165 (248)
T 2yvl_A           88 NLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD--  165 (248)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC--
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC--
Confidence            456889999999999987532  1177999999999999999875        4678888988754356789999983  


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                         .++   +..++.++.++|+|||++++.....+
T Consensus       166 ---~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~  194 (248)
T 2yvl_A          166 ---VRE---PWHYLEKVHKSLMEGAPVGFLLPTAN  194 (248)
T ss_dssp             ---SSC---GGGGHHHHHHHBCTTCEEEEEESSHH
T ss_pred             ---CcC---HHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence               344   45789999999999999999987643

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.16  E-value=1.7e-11  Score=109.32  Aligned_cols=100  Identities=17%  Similarity=0.153  Sum_probs=76.7

Q ss_pred             HHhCCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-CCC---
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YRS---  136 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~~~---  136 (353)
                      .+....++.+|||||||+|..+.    ..+ +.+|+|+|+++.+++.|+++        +++++++|+... + +..   
T Consensus        58 ~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  137 (225)
T 3tr6_A           58 LLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQ  137 (225)
T ss_dssp             HHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTC
T ss_pred             HHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccC
Confidence            33344567899999999999643    233 78999999999999999876        378999998653 2 211   


Q ss_pred             -CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          137 -DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       137 -~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                       ++||+|++...      ......++.++.++|+|||++++....
T Consensus       138 ~~~fD~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          138 AWQYDLIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             TTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             CCCccEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence             78999997553      122577999999999999999987654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.15  E-value=2.8e-11  Score=113.97  Aligned_cols=100  Identities=16%  Similarity=0.103  Sum_probs=76.1

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCCC--CCCCccEE
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLPY--RSDFGDAA  142 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~~--~~~~fD~V  142 (353)
                      +++.+|||||||+|.++.    ..+..+|+++|+++.+++.|+++           +++++.+|+..++.  .+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            566899999999999754    23457999999999999999874           37889999887653  47899999


Q ss_pred             EechhhhhcCChhHH--HHHHHHHHhccccCcEEEEEEcC
Q 018606          143 ISIAVLHHLSTESRR--KKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       143 i~~~vl~h~~~~e~~--~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++....++.+... .  ..+++++.++|+|||++++....
T Consensus       174 i~d~~~~~~~~~~-l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          174 IIDTTDPAGPASK-LFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             EEECC----------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EECCCCccccchh-hhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            9977655433211 1  58899999999999999998643

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.15  E-value=4.7e-11  Score=110.42  Aligned_cols=96  Identities=14%  Similarity=0.147  Sum_probs=79.4

Q ss_pred             CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~  144 (353)
                      .+.++.+|||+|||+|.++.    . .++..|+++|+++.+++.|+++        +++++.+|+... ++++.||+|++
T Consensus       109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~  187 (277)
T 1o54_A          109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFL  187 (277)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEE
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEE
Confidence            56788999999999998743    2 4578999999999999999876        367888998876 66678999998


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      .     .++   +..++.++.++|+|||++++.....+
T Consensus       188 ~-----~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~  217 (277)
T 1o54_A          188 D-----VPD---PWNYIDKCWEALKGGGRFATVCPTTN  217 (277)
T ss_dssp             C-----CSC---GGGTHHHHHHHEEEEEEEEEEESSHH
T ss_pred             C-----CcC---HHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence            3     444   45789999999999999999987643

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.15  E-value=1.3e-10  Score=101.86  Aligned_cols=86  Identities=23%  Similarity=0.231  Sum_probs=67.3

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      ..++.+|||+|||+|.++..   .+...|+|+|+|+.|++.|+++  +++++++|+..++   ++||+|++...++|+..
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence            45778999999999997532   3334799999999999999988  7999999999875   68999999999999875


Q ss_pred             hhHHHHHHHHHHhcc
Q 018606          154 ESRRKKAIEELVRVV  168 (353)
Q Consensus       154 ~e~~~~~l~el~rvL  168 (353)
                      .. ...+++++.++|
T Consensus       126 ~~-~~~~l~~~~~~~  139 (200)
T 1ne2_A          126 HS-DRAFIDKAFETS  139 (200)
T ss_dssp             ---CHHHHHHHHHHE
T ss_pred             ch-hHHHHHHHHHhc
Confidence            32 357899999998

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.15  E-value=6e-11  Score=109.92  Aligned_cols=107  Identities=17%  Similarity=0.134  Sum_probs=79.7

Q ss_pred             hCCCCCCEEEEECCccccccc----cCCC-cEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC----CCCCcc
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY----RSDFGD  140 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~----~~~~-~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~----~~~~fD  140 (353)
                      ....++.+|||+|||+|..+.    ..++ ..|+|+|+++.+++.++++       ++.++.+|+..++.    ..+.||
T Consensus        79 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD  158 (274)
T 3ajd_A           79 LNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFD  158 (274)
T ss_dssp             HCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCC
Confidence            356788999999999999753    2345 7999999999999998876       46888999887654    267899


Q ss_pred             EEEec------hhhhhcC--------C-hhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          141 AAISI------AVLHHLS--------T-ESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       141 ~Vi~~------~vl~h~~--------~-~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +|++.      +++++-+        . ......+|.++.++|||||++++++.+...
T Consensus       159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~  216 (274)
T 3ajd_A          159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEV  216 (274)
T ss_dssp             EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCT
T ss_pred             EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCh
Confidence            99986      2322110        0 011478999999999999999998876543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.14  E-value=8.1e-11  Score=109.42  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=74.7

Q ss_pred             CCCCEEEEECCccccccc---cCCCcEEEEEeC-CHHHHHHHHHc-----------------CCeEEEeeCCCCC--C--
Q 018606           80 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDI-SPSLIKICVDR-----------------GHEVLVADAVNLP--Y--  134 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~-S~~~l~~a~~~-----------------~i~~~~~D~~~l~--~--  134 (353)
                      .++.+|||||||+|.++.   ......|+|+|+ |+.|++.|+++                 ++++...|.....  +  
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            467899999999999743   132349999999 89999998764                 2455555544321  1  


Q ss_pred             --CCCCccEEEechhhhhcCChhHHHHHHHHHHhccc---c--CcEEEEEEc
Q 018606          135 --RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVK---K--GSLVLITVW  179 (353)
Q Consensus       135 --~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLk---p--gG~lli~~~  179 (353)
                        .++.||+|++..+++|...   ...+++.+.++|+   |  ||++++..-
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~~~---~~~ll~~l~~~Lk~~~p~~gG~l~v~~~  206 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFHQA---HDALLRSVKMLLALPANDPTAVALVTFT  206 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCGGG---HHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred             hccCCCCCEEEEeCcccChHH---HHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence              3578999999999998766   6789999999999   9  999877643

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.13  E-value=1.8e-11  Score=116.79  Aligned_cols=107  Identities=12%  Similarity=0.027  Sum_probs=78.7

Q ss_pred             HHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCCC----CC
Q 018606           72 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLPY----RS  136 (353)
Q Consensus        72 ~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~l~~----~~  136 (353)
                      +...+....++.+|||+|||+|.++..  ..+..|+|+|+|+.+++.|+++    +     ++++++|+..+..    ..
T Consensus       144 l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~  223 (332)
T 2igt_A          144 LKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRG  223 (332)
T ss_dssp             HHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcC
Confidence            344443235678999999999997532  3456999999999999999886    2     6889999877432    15


Q ss_pred             CCccEEEechh----------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          137 DFGDAAISIAV----------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       137 ~~fD~Vi~~~v----------l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +.||+|++.--          +++..   ....++.++.++|+|||.+++.....
T Consensus       224 ~~fD~Ii~dPP~~~~~~~~~~~~~~~---~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          224 STYDIILTDPPKFGRGTHGEVWQLFD---HLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             CCBSEEEECCCSEEECTTCCEEEHHH---HHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             CCceEEEECCccccCCchHHHHHHHH---HHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            68999999321          12222   26789999999999999988876553

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.13  E-value=9.4e-11  Score=105.87  Aligned_cols=105  Identities=11%  Similarity=0.116  Sum_probs=83.9

Q ss_pred             HHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCC
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSD  137 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~  137 (353)
                      +++..+...++++.+|||||||+|.+..    ..+..+|+|+|+++.+++.|+++        .+++..+|......+.+
T Consensus        10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~   89 (230)
T 3lec_A           10 KRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEAD   89 (230)
T ss_dssp             HHHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred             HHHHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccccc
Confidence            4566666678899999999999999743    24556899999999999999986        37899999988665445


Q ss_pred             CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .||+|+..++...+     ...+|.+..+.|+++|+|+++-.
T Consensus        90 ~~D~IviaGmGg~l-----I~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           90 NIDTITICGMGGRL-----IADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             CCCEEEEEEECHHH-----HHHHHHHTGGGGTTCCEEEEEES
T ss_pred             ccCEEEEeCCchHH-----HHHHHHHHHHHhCcCCEEEEECC
Confidence            79998876653322     56788889999999999998874

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.12  E-value=2.2e-10  Score=113.65  Aligned_cols=108  Identities=20%  Similarity=0.218  Sum_probs=83.8

Q ss_pred             hCCCCCCEEEEECCccccccc----cCCC-cEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEE
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAA  142 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~----~~~~-~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~V  142 (353)
                      ....++.+|||+|||+|..+.    ..++ ..|+|+|+++.+++.++++       ++.++.+|+..++  ++++.||+|
T Consensus       255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~V  334 (450)
T 2yxl_A          255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKV  334 (450)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEE
T ss_pred             cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEE
Confidence            356788999999999998643    2344 7999999999999998876       4688889998876  555789999


Q ss_pred             Ee------chhhhhcCChh------H-------HHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          143 IS------IAVLHHLSTES------R-------RKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       143 i~------~~vl~h~~~~e------~-------~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      ++      .+++++.++..      +       ...+|.++.++|||||++++++......
T Consensus       335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~  395 (450)
T 2yxl_A          335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKE  395 (450)
T ss_dssp             EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG
T ss_pred             EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence            96      34555444321      0       1578999999999999999998776543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.12  E-value=5.1e-11  Score=107.95  Aligned_cols=93  Identities=14%  Similarity=0.186  Sum_probs=62.8

Q ss_pred             CCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHcCCeEEEe---eCCCCC---CCCCCccEEEechhhhh
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDRGHEVLVA---DAVNLP---YRSDFGDAAISIAVLHH  150 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~---D~~~l~---~~~~~fD~Vi~~~vl~h  150 (353)
                      .++.+|||||||+|.++..  ..+ ..|+|+|+|+.|++.|+++.-.+...   ++..+.   +....||.+.+..++.+
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~  115 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS  115 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence            4567999999999998642  224 49999999999999988764333322   111111   11112455544444443


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +      ..+|.++.|+|||||++++.+
T Consensus       116 l------~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          116 L------DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             G------GGTHHHHHHHSCTTCEEEEEE
T ss_pred             H------HHHHHHHHHhccCCCEEEEEE
Confidence            3      468999999999999999965

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.11  E-value=4.6e-11  Score=109.12  Aligned_cols=99  Identities=16%  Similarity=0.077  Sum_probs=76.5

Q ss_pred             HHhCCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C-----
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-----  134 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~-----  134 (353)
                      .+....++.+|||||||+|..+.    ..+ +.+|+++|+++.+++.|+++        +++++.+|+... + +     
T Consensus        73 ~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~  152 (247)
T 1sui_A           73 MLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEK  152 (247)
T ss_dssp             HHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGG
T ss_pred             HHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccC
Confidence            33344566899999999998643    234 78999999999999999875        367899998753 3 2     


Q ss_pred             CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          135 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       135 ~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .+++||+|++....   ..   ...++.++.++|||||++++...
T Consensus       153 ~~~~fD~V~~d~~~---~~---~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          153 NHGSYDFIFVDADK---DN---YLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             GTTCBSEEEECSCS---TT---HHHHHHHHHHHBCTTCCEEEECT
T ss_pred             CCCCEEEEEEcCch---HH---HHHHHHHHHHhCCCCeEEEEecC
Confidence            15789999987542   22   57899999999999999988753

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.11  E-value=7e-12  Score=114.21  Aligned_cols=101  Identities=18%  Similarity=0.064  Sum_probs=77.1

Q ss_pred             HHHhCCCCCCEEEEECCccccccc----cC-CCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC-CC----
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP-YR----  135 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~----~~-~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~-~~----  135 (353)
                      ..+....++.+|||||||+|..+.    .. ++..|+++|+++.+++.|+++        +++++.+|+.... ..    
T Consensus        53 ~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~  132 (242)
T 3r3h_A           53 QMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEG  132 (242)
T ss_dssp             HHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhcc
Confidence            333344567899999999998643    23 478999999999998887765        4789999987642 11    


Q ss_pred             -CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          136 -SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       136 -~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                       .++||+|++....      .....++.++.++|||||++++....
T Consensus       133 ~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          133 GEHQFDFIFIDADK------TNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             CSSCEEEEEEESCG------GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             CCCCEeEEEEcCCh------HHhHHHHHHHHHhcCCCeEEEEECCc
Confidence             4789999987642      22567899999999999999997544

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.11  E-value=1.3e-10  Score=105.83  Aligned_cols=105  Identities=9%  Similarity=0.086  Sum_probs=82.9

Q ss_pred             HHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCC
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSD  137 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~  137 (353)
                      +++..+...++++.+|||||||+|.+..    ..+...|+|+|+++.+++.|+++        .+++..+|......+..
T Consensus        10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~   89 (244)
T 3gnl_A           10 KRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKD   89 (244)
T ss_dssp             HHHHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred             HHHHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccc
Confidence            4566666678899999999999999743    24556999999999999999987        36899999888655444


Q ss_pred             CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .||+|++.++.-.+     ...+|.+..+.|+++|+|+++-.
T Consensus        90 ~~D~IviagmGg~l-----I~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           90 AIDTIVIAGMGGTL-----IRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             CCCEEEEEEECHHH-----HHHHHHHTGGGGTTCCEEEEEES
T ss_pred             cccEEEEeCCchHH-----HHHHHHHHHHHhCCCCEEEEEcC
Confidence            69999876543321     56788899999999999999864

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.10  E-value=8.7e-11  Score=110.99  Aligned_cols=98  Identities=13%  Similarity=0.142  Sum_probs=76.7

Q ss_pred             CEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC--CCCCCCccEEEechhhh
Q 018606           83 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL--PYRSDFGDAAISIAVLH  149 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l--~~~~~~fD~Vi~~~vl~  149 (353)
                      .+|||||||+|.++.    ..++.+++++|+++.|++.|+++       +++++.+|+..+  .+++++||+|++....+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            499999999999754    26788999999999999999986       478999998764  24568999999965433


Q ss_pred             hcCChh-HHHHHHHHHHhccccCcEEEEEEcC
Q 018606          150 HLSTES-RRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       150 h~~~~e-~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ...... ...++++++.++|+|||++++....
T Consensus       171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            211110 0157999999999999999998864

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.09  E-value=2.2e-11  Score=110.96  Aligned_cols=97  Identities=8%  Similarity=0.069  Sum_probs=67.9

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC---CCC---CCCccEE
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL---PYR---SDFGDAA  142 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l---~~~---~~~fD~V  142 (353)
                      ++.+|||+|||+|.++.    ..++..|+|+|+|+.|++.|+++        +++++++|+...   +++   +++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            56799999999998643    23568999999999999999886        278999997652   444   2689999


Q ss_pred             EechhhhhcCC------------hhHHHHHHHHHHhccccCcEEEEE
Q 018606          143 ISIAVLHHLST------------ESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       143 i~~~vl~h~~~------------~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      ++.-..++...            .+....++.++.++|||||.+.+.
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            99855443320            011235678899999999998665

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.08  E-value=1.8e-11  Score=115.47  Aligned_cols=103  Identities=12%  Similarity=0.065  Sum_probs=73.3

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeC----CHHHHHHHHH-----cCCeEEEe-eCCCCCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDI----SPSLIKICVD-----RGHEVLVA-DAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~----S~~~l~~a~~-----~~i~~~~~-D~~~l~~~~~~fD~Vi~~  145 (353)
                      .+.++.+|||||||+|.++..  .. ..|+|+|+    ++.+++.+..     .++.++++ |+..++  ..+||+|+|.
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd  155 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCD  155 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEEC
Confidence            356789999999999998642  22 58999999    5654432211     24788888 888765  5689999997


Q ss_pred             hhhh---hcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          146 AVLH---HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       146 ~vl~---h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .+++   +..+..+...+|..+.++|||||.|++.++..+.
T Consensus       156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~  196 (305)
T 2p41_A          156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM  196 (305)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS
T ss_pred             CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence            6543   2222221225889999999999999998887643

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.08  E-value=2.1e-10  Score=103.26  Aligned_cols=103  Identities=10%  Similarity=0.062  Sum_probs=79.7

Q ss_pred             HHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CCCCCC
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LPYRSD  137 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~-l~~~~~  137 (353)
                      ++..+...++++.+|||||||+|.+..    ..+..+|+|+|+++.+++.|+++        .+++..+|... ++. ..
T Consensus         5 RL~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~   83 (225)
T 3kr9_A            5 RLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TD   83 (225)
T ss_dssp             HHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GG
T ss_pred             HHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-Cc
Confidence            455566677889999999999999743    34567999999999999999986        36899999864 432 22


Q ss_pred             CccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          138 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .||+|+..+.-..     ....+|.+....|+++|++++.--
T Consensus        84 ~~D~IviaG~Gg~-----~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           84 QVSVITIAGMGGR-----LIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             CCCEEEEEEECHH-----HHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             CCCEEEEcCCChH-----HHHHHHHHHHHHhCCCCEEEEECC
Confidence            6999887654221     146789999999999999998754

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.06  E-value=3.2e-10  Score=103.60  Aligned_cols=97  Identities=21%  Similarity=0.340  Sum_probs=77.6

Q ss_pred             CCCCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      .+++..+|||||||+|.++..    .+...|+|+|+++.|++.++++      ...+.+.|...-+ +.+.||++++.-+
T Consensus       129 ~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkt  207 (281)
T 3lcv_B          129 HLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKT  207 (281)
T ss_dssp             GSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTC
T ss_pred             ccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHH
Confidence            456677999999999998642    5778999999999999999987      3467788877655 4678999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      +||+.+.. ....+ ++...|+|+|.++-.
T Consensus       208 i~~Le~q~-kg~g~-~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          208 LPCLETQQ-RGSGW-EVIDIVNSPNIVVTF  235 (281)
T ss_dssp             HHHHHHHS-TTHHH-HHHHHSSCSEEEEEE
T ss_pred             HHHhhhhh-hHHHH-HHHHHhCCCCEEEec
Confidence            99997654 23444 999999999875433

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.06  E-value=1.4e-10  Score=104.59  Aligned_cols=97  Identities=21%  Similarity=0.176  Sum_probs=75.2

Q ss_pred             CCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC----CCCCC--CC
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVN----LPYRS--DF  138 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~----l~~~~--~~  138 (353)
                      ...++.+|||||||+|..+.    ..+ +..|+++|+++.+++.|+++        .++++.+|+..    ++..+  ++
T Consensus        69 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           69 SLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             HHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             HhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            34467899999999998643    233 67999999999999999875        37888888754    23333  78


Q ss_pred             ccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          139 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       139 fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ||+|++....      .....++.++.++|+|||++++....
T Consensus       149 fD~V~~d~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          149 FDLIFIDADK------RNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             EEEEEECSCG------GGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             cCEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9999987542      12578999999999999999997654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.06  E-value=7.4e-11  Score=106.64  Aligned_cols=97  Identities=13%  Similarity=0.124  Sum_probs=75.7

Q ss_pred             CCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C----------
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P----------  133 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~----------  133 (353)
                      .+.++.+|||||||+|..+.    ..+ +..|+++|+++.+++.|+++        .+.++.+|+... +          
T Consensus        57 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~  136 (239)
T 2hnk_A           57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS  136 (239)
T ss_dssp             HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred             HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence            34567899999999998753    233 68999999999999999876        278888887652 2          


Q ss_pred             ----CCC--CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          134 ----YRS--DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       134 ----~~~--~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                          +++  +.||+|++.....+      ...++.++.++|+|||++++....
T Consensus       137 ~~~~f~~~~~~fD~I~~~~~~~~------~~~~l~~~~~~L~pgG~lv~~~~~  183 (239)
T 2hnk_A          137 WASDFAFGPSSIDLFFLDADKEN------YPNYYPLILKLLKPGGLLIADNVL  183 (239)
T ss_dssp             GGTTTCCSTTCEEEEEECSCGGG------HHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             ccccccCCCCCcCEEEEeCCHHH------HHHHHHHHHHHcCCCeEEEEEccc
Confidence                222  78999999864332      467899999999999999997643

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.05  E-value=5e-10  Score=110.33  Aligned_cols=106  Identities=15%  Similarity=0.175  Sum_probs=83.0

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC--CCCCCccEEEe-
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAIS-  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~--~~~~~fD~Vi~-  144 (353)
                      ...++.+|||+|||+|..+.    ..++..|+|+|+++.+++.++++      ++.++.+|+..++  ++++.||+|++ 
T Consensus       243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D  322 (429)
T 1sqg_A          243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD  322 (429)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEe
Confidence            56788999999999999643    34558999999999999998876      4788999998876  55678999996 


Q ss_pred             -----chhhhhcCCh------hH-------HHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          145 -----IAVLHHLSTE------SR-------RKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       145 -----~~vl~h~~~~------e~-------~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                           .+++++.++.      ++       ...+|.++.++|||||++++++.+...
T Consensus       323 ~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~  379 (429)
T 1sqg_A          323 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  379 (429)
T ss_dssp             CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             CCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence                 3355554431      11       147899999999999999999866543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.04  E-value=1.1e-10  Score=104.43  Aligned_cols=99  Identities=16%  Similarity=0.117  Sum_probs=75.6

Q ss_pred             HHhCCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-CCC---
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-YRS---  136 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~~~---  136 (353)
                      .+..+.++.+|||||||+|..+.    ..+ +.+|+++|+++.+++.|+++        +++++.+|+... + +..   
T Consensus        63 ~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~  142 (229)
T 2avd_A           63 NLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGE  142 (229)
T ss_dssp             HHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred             HHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCC
Confidence            33345567899999999998643    233 68999999999999999875        468889887653 1 211   


Q ss_pred             -CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          137 -DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       137 -~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                       +.||+|++...   ...   ...++.++.++|+|||++++...
T Consensus       143 ~~~~D~v~~d~~---~~~---~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          143 AGTFDVAVVDAD---KEN---CSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             TTCEEEEEECSC---STT---HHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCccEEEECCC---HHH---HHHHHHHHHHHcCCCeEEEEECC
Confidence             68999999654   112   56899999999999999998753

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.04  E-value=3.9e-10  Score=102.04  Aligned_cols=96  Identities=20%  Similarity=0.250  Sum_probs=77.2

Q ss_pred             CCCCEEEEECCcccccccc-CCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606           80 PSGSLVLDAGCGNGKYLGL-NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~-~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~  152 (353)
                      .+..+|||||||.|.++.. .+...|+|+|+++.|++.+++.    +  ..+..+|....+++ +.||+|++.-++||+.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~LE  182 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLLPLLE  182 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCHHHHH
T ss_pred             CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHHHHhh
Confidence            5678999999999998642 4788999999999999999987    3  46788899887764 5899999999999987


Q ss_pred             ChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          153 TESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..+  ...+.++...|+++|. +|+++
T Consensus       183 ~q~--~~~~~~ll~aL~~~~v-vVsfP  206 (253)
T 3frh_A          183 REQ--AGSAMALLQSLNTPRM-AVSFP  206 (253)
T ss_dssp             HHS--TTHHHHHHHHCBCSEE-EEEEE
T ss_pred             hhc--hhhHHHHHHHhcCCCE-EEEcC
Confidence            654  2344488889999855 55555

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.04  E-value=2.8e-10  Score=108.54  Aligned_cols=100  Identities=18%  Similarity=0.204  Sum_probs=75.1

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC--CCCCCCccE
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL--PYRSDFGDA  141 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l--~~~~~~fD~  141 (353)
                      .+.+.+|||||||+|..+.    ..+..+|+++|+|+.|++.|+++           +++++.+|+...  .+++++||+
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            3556899999999999753    23467999999999999999874           468899998763  234678999


Q ss_pred             EEechhhhhcCChh-HHHHHHHHHHhccccCcEEEEEE
Q 018606          142 AISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       142 Vi~~~vl~h~~~~e-~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      |++.....+..... ....+++++.++|+|||++++..
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            99865421111110 02689999999999999999974

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.03  E-value=1.4e-10  Score=109.77  Aligned_cols=100  Identities=17%  Similarity=0.084  Sum_probs=76.5

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeeCCC-CCCCCCCccEE
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVN-LPYRSDFGDAA  142 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~-l~~~~~~fD~V  142 (353)
                      +.+.+|||||||+|.++.    ..+..+|+++|+++.+++.|+++            +++++.+|+.. ++..+++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            456799999999999754    23467999999999999999864            36789999876 34446789999


Q ss_pred             Eechhhhh-c-CChhH--HHHHHHHHHhccccCcEEEEEEc
Q 018606          143 ISIAVLHH-L-STESR--RKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       143 i~~~vl~h-~-~~~e~--~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ++....++ . .....  ...+++++.++|+|||++++...
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            99765543 0 11111  25889999999999999999753

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.03  E-value=5.7e-10  Score=111.42  Aligned_cols=103  Identities=14%  Similarity=0.172  Sum_probs=79.0

Q ss_pred             CCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCCccEEEec--
Q 018606           81 SGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISI--  145 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~-~~~~fD~Vi~~--  145 (353)
                      ++.+|||+|||+|..+.    . .....|+|+|+|+.+++.++++       ++.++++|+..++. .++.||+|++.  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            88999999999999643    2 3457999999999999999876       46788899988763 46789999972  


Q ss_pred             ----hhhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          146 ----AVLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       146 ----~vl~h~~~~-------------e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                          +++.+.++.             .....+|.++.++|||||+|++++.+...
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~  251 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQ  251 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSS
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCc
Confidence                344433221             11357899999999999999998876543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.01  E-value=1.3e-09  Score=95.74  Aligned_cols=91  Identities=11%  Similarity=0.123  Sum_probs=71.3

Q ss_pred             CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      ..++.+|||+|||+|.++..   .....|+|+|+|+.+++.|+++      +++++++|+..++   +.||+|++...++
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~  123 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG  123 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence            44678999999999997542   3234899999999999999987      4789999998875   4899999988877


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEE
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      +..... ...++.++.++|  ||.++
T Consensus       124 ~~~~~~-~~~~l~~~~~~l--~~~~~  146 (207)
T 1wy7_A          124 SQRKHA-DRPFLLKAFEIS--DVVYS  146 (207)
T ss_dssp             SSSTTT-THHHHHHHHHHC--SEEEE
T ss_pred             cccCCc-hHHHHHHHHHhc--CcEEE
Confidence            765332 357889999988  55433

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.01  E-value=2.5e-10  Score=107.03  Aligned_cols=101  Identities=14%  Similarity=0.116  Sum_probs=73.3

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCC-CCCCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~-l~~~~~~fD~Vi  143 (353)
                      +.+.+|||||||+|..+.    ..+..+|+++|+++.+++.|+++           +++++.+|+.. ++..+++||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            445799999999999754    23457999999999999999874           46889999765 344467899999


Q ss_pred             echhhhhcCChhH--HHHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVLHHLSTESR--RKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~h~~~~e~--~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +...-+++.....  ...+++++.++|+|||++++...+
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            8543221211110  267899999999999999998543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.01  E-value=5.9e-10  Score=104.18  Aligned_cols=99  Identities=16%  Similarity=0.147  Sum_probs=73.6

Q ss_pred             CCCCCCEEEEECC------cccc-ccc-cCC-CcEEEEEeCCHHHHHHHHHcCCeE-EEeeCCCCCCCCCCccEEEechh
Q 018606           78 SLPSGSLVLDAGC------GNGK-YLG-LNP-DCFFVGCDISPSLIKICVDRGHEV-LVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGC------G~G~-~~~-~~~-~~~v~gvD~S~~~l~~a~~~~i~~-~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      .++++.+|||+||      |+|. .+. ..+ +..|+|+|+|+. +     .++++ +++|+..++++ ++||+|++...
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v-----~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~  132 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V-----SDADSTLIGDCATVHTA-NKWDLIISDMY  132 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B-----CSSSEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C-----CCCEEEEECccccCCcc-CcccEEEEcCC
Confidence            4678899999999      4464 221 233 689999999998 2     37899 99999998764 68999999643


Q ss_pred             hh--------hcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          148 LH--------HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       148 l~--------h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .+        +....+....+++++.++|||||+|++.++....
T Consensus       133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~  176 (290)
T 2xyq_A          133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW  176 (290)
T ss_dssp             CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred             ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence            21        1111222457999999999999999998876543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.01  E-value=2.6e-10  Score=103.29  Aligned_cols=101  Identities=20%  Similarity=0.130  Sum_probs=76.8

Q ss_pred             HHHHhCCCCCCEEEEECCccccccc----cCC-CcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C---
Q 018606           73 ATFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y---  134 (353)
Q Consensus        73 ~~~l~~l~~~~~VLDvGCG~G~~~~----~~~-~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-~---  134 (353)
                      ...+....++.+|||||||+|..+.    ..+ +.+++++|+++.+++.|+++        +++++.+|+... + +   
T Consensus        62 l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~  141 (237)
T 3c3y_A           62 MSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQG  141 (237)
T ss_dssp             HHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS
T ss_pred             HHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc
Confidence            3333344567899999999998643    233 78999999999999999875        367899988753 2 2   


Q ss_pred             --CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          135 --RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       135 --~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                        ..++||+|++....      .....+++.+.++|+|||++++...
T Consensus       142 ~~~~~~fD~I~~d~~~------~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          142 QESEGSYDFGFVDADK------PNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             TTCTTCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             cCCCCCcCEEEECCch------HHHHHHHHHHHHhcCCCeEEEEecC
Confidence              25789999986432      2257899999999999999988653

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.01  E-value=2e-10  Score=106.94  Aligned_cols=101  Identities=15%  Similarity=0.116  Sum_probs=76.6

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCCccEE
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAA  142 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-~~~~~~fD~V  142 (353)
                      .+++.+|||||||+|..+.    ..+..+++++|+++.+++.|+++           +++++.+|+... +...++||+|
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI  155 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence            3456899999999999754    23467999999999999999875           357889988763 2236789999


Q ss_pred             EechhhhhcCChhHH--HHHHHHHHhccccCcEEEEEEcC
Q 018606          143 ISIAVLHHLSTESRR--KKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       143 i~~~vl~h~~~~e~~--~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++....++.+. ...  ..+++.+.++|+|||++++...+
T Consensus       156 i~d~~~~~~~~-~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          156 IVDSSDPIGPA-ETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             EEECCCTTTGG-GGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEcCCCCCCcc-hhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            99654332221 112  58999999999999999988543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.00  E-value=2.6e-10  Score=107.38  Aligned_cols=101  Identities=18%  Similarity=0.152  Sum_probs=74.3

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCC-CCCCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~-l~~~~~~fD~Vi  143 (353)
                      +.+.+|||||||+|.++.    ..+..+|+++|+++.+++.|+++           +++++.+|+.. ++..+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            456899999999999754    23457999999999999999874           46889999865 344467899999


Q ss_pred             echhhhhcCCh-hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~h~~~~-e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +....+..+.. .....+++++.++|+|||++++....
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            96544322111 01246899999999999999998643

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.99  E-value=1e-09  Score=104.80  Aligned_cols=101  Identities=22%  Similarity=0.217  Sum_probs=79.5

Q ss_pred             CCCCCEEEEECCcccccccc----CC-----CcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           79 LPSGSLVLDAGCGNGKYLGL----NP-----DCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~----~~-----~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      ..++.+|||+|||+|.++..    .+     ...++|+|+++.+++.|+.+      .+.++++|..... ....||+|+
T Consensus       128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~-~~~~fD~Ii  206 (344)
T 2f8l_A          128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVVI  206 (344)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEEE
T ss_pred             CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc-ccCCccEEE
Confidence            34568999999999998631    12     27999999999999999876      4788999987643 467899999


Q ss_pred             echhhhhcCChhH---------------HHHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVLHHLSTESR---------------RKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~h~~~~e~---------------~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +.-.+++++..+.               ...++..+.+.|+|||++++.++.
T Consensus       207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~  258 (344)
T 2f8l_A          207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  258 (344)
T ss_dssp             EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence            9987776654331               125899999999999999999854

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.99  E-value=1.3e-09  Score=105.27  Aligned_cols=95  Identities=13%  Similarity=-0.025  Sum_probs=75.7

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CCC-CCCCccEEEech
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPY-RSDFGDAAISIA  146 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~-l~~-~~~~fD~Vi~~~  146 (353)
                      .++.+|||+| |+|.++.    ..+..+|+|+|+|+.|++.|+++       +++++.+|+.. +|. .+++||+|++..
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence            4678999999 9999753    24557999999999999999886       47899999998 664 356899999986


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEE-EEEEc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLV-LITVW  179 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~l-li~~~  179 (353)
                      .+++..    ...++.++.++|||||++ ++.+.
T Consensus       250 p~~~~~----~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          250 PETLEA----IRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             CSSHHH----HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             CCchHH----HHHHHHHHHHHcccCCeEEEEEEe
Confidence            554331    478999999999999955 55443

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.99  E-value=2.6e-10  Score=108.24  Aligned_cols=100  Identities=15%  Similarity=0.154  Sum_probs=75.2

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-~~~~~~fD~Vi  143 (353)
                      +.+.+|||||||+|.++.    ..+..+|+++|+++.+++.|+++           +++++.+|+... +..+++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            456799999999999754    23567999999999999999875           367888987652 33357899999


Q ss_pred             echhhhhcCChhHH--HHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVLHHLSTESRR--KKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~h~~~~e~~--~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +.... ++......  ..+++++.++|+|||++++...+
T Consensus       195 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          195 VDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            86532 11111111  68999999999999999998644

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.98  E-value=6.7e-10  Score=103.51  Aligned_cols=96  Identities=20%  Similarity=0.212  Sum_probs=72.5

Q ss_pred             CCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCc---cEEEech
Q 018606           81 SGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFG---DAAISIA  146 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~f---D~Vi~~~  146 (353)
                      ++.+|||+|||+|.++..   .++..|+|+|+|+.+++.|+++        +++|+++|+... ++ +.|   |+|+++-
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~IvsnP  200 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSNP  200 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEECC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEcC
Confidence            567999999999997421   2788999999999999999886        278999999873 32 578   9999961


Q ss_pred             ------------hhhhcCCh-----hHHHHHHHHHH-hccccCcEEEEEEc
Q 018606          147 ------------VLHHLSTE-----SRRKKAIEELV-RVVKKGSLVLITVW  179 (353)
Q Consensus       147 ------------vl~h~~~~-----e~~~~~l~el~-rvLkpgG~lli~~~  179 (353)
                                  +. |-+..     .....+++++. +.|+|||.+++...
T Consensus       201 Pyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~  250 (284)
T 1nv8_A          201 PYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG  250 (284)
T ss_dssp             CCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred             CCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence                        11 22110     00137899999 99999999998653

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.98  E-value=1.9e-10  Score=107.31  Aligned_cols=68  Identities=25%  Similarity=0.374  Sum_probs=56.0

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      .+.++.+|||||||+|.++..  ..+..|+|+|+++.|++.++++        +++++++|+..++++  .||+|+++..
T Consensus        25 ~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlp  102 (285)
T 1zq9_A           25 ALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLP  102 (285)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECC
T ss_pred             CCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecC
Confidence            356788999999999998653  3356999999999999999875        468999999988765  7999999643

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.98  E-value=2.6e-10  Score=107.89  Aligned_cols=98  Identities=17%  Similarity=0.171  Sum_probs=71.4

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCC-CCCCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~-l~~~~~~fD~Vi  143 (353)
                      +.+.+|||||||+|..+.    ..+..+|+++|+++.+++.|+++           +++++.+|+.. ++..+++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            455799999999999753    23567999999999999999875           25788888765 333467899999


Q ss_pred             echhhhhcCChhHH--HHHHHHHHhccccCcEEEEEE
Q 018606          144 SIAVLHHLSTESRR--KKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       144 ~~~vl~h~~~~e~~--~~~l~el~rvLkpgG~lli~~  178 (353)
                      +.... ++......  ..+++++.++|+|||++++..
T Consensus       187 ~d~~~-~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          187 TDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCC-CCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            86543 33222111  588999999999999999975

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.96  E-value=4.5e-10  Score=104.23  Aligned_cols=101  Identities=15%  Similarity=0.084  Sum_probs=75.6

Q ss_pred             CCCCEEEEECCcccccccc---C-CCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCC-CCCCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLGL---N-PDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVN-LPYRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~---~-~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~-l~~~~~~fD~Vi  143 (353)
                      +.+.+|||||||+|.++..   . +..+|+++|+++.+++.|+++           +++++.+|+.. ++...++||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            3567999999999997542   3 457999999999999999874           46889999876 333467899999


Q ss_pred             echhhhhcCChh-HHHHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~h~~~~e-~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +....++.+... ...++++++.++|+|||++++...+
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            965432221100 0147899999999999999998643

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.95  E-value=7.5e-10  Score=109.84  Aligned_cols=107  Identities=11%  Similarity=0.134  Sum_probs=80.1

Q ss_pred             hCCCCCCEEEEECCccccccc----cC-CCcEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCC-CCCCCccEEEe
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLP-YRSDFGDAAIS  144 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~----~~-~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~-~~~~~fD~Vi~  144 (353)
                      ....++.+|||+|||+|..+.    .. ....|+|+|+|+.+++.++++    +  +.++++|+..++ +.+++||+|++
T Consensus        97 L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A           97 LDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             cCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEE
Confidence            356788999999999998642    23 347999999999999999876    3  677888887765 34678999995


Q ss_pred             ------chhhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          145 ------IAVLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       145 ------~~vl~h~~~~-------------e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                            .+++.+-++.             .....+|.++.++|||||+|+.++.+...
T Consensus       177 D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~  234 (464)
T 3m6w_A          177 DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP  234 (464)
T ss_dssp             ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred             CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence                  2334333321             01267899999999999999998766543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.93  E-value=1.5e-09  Score=104.98  Aligned_cols=100  Identities=21%  Similarity=0.093  Sum_probs=75.5

Q ss_pred             CCCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           79 LPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      ..++.+|||+|||+|.++..    .+...|+|+|+|+.|++.|+++        ++++.++|+..+++++++||+|++.-
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            67889999999999997532    3334899999999999999986        47999999999998888999999964


Q ss_pred             hhhhcC----Ch-hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLS----TE-SRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~----~~-e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .+....    .. +....++.++.++|  ||.+++.+..
T Consensus       295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~  331 (373)
T 3tm4_A          295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE  331 (373)
T ss_dssp             CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC
T ss_pred             CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC
Confidence            432211    11 11367888999988  5666666554

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.93  E-value=4.5e-10  Score=104.46  Aligned_cols=98  Identities=12%  Similarity=0.104  Sum_probs=72.6

Q ss_pred             CCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc-----------------CCeEEEeeCCCC-CCCCCC
Q 018606           80 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNL-PYRSDF  138 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~-----------------~i~~~~~D~~~l-~~~~~~  138 (353)
                      +.+.+|||||||+|.++.   ..+..+|+++|+++.+++.|+++                 +++++.+|+... +. +++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence            456899999999998753   13556999999999999999864                 357888887652 23 578


Q ss_pred             ccEEEechhhhhcCChhH--HHHHHHHHHhccccCcEEEEEEc
Q 018606          139 GDAAISIAVLHHLSTESR--RKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       139 fD~Vi~~~vl~h~~~~e~--~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ||+|++....+ ......  ...+++++.++|+|||++++...
T Consensus       153 fD~Ii~d~~~~-~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          153 FDVIIADSTDP-VGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             EEEEEEECCCC-C-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEEECCCCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            99999865432 211111  15789999999999999999853

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.92  E-value=1.8e-09  Score=105.14  Aligned_cols=109  Identities=9%  Similarity=0.075  Sum_probs=76.9

Q ss_pred             HHHhCC-CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCC-CCCCCccEEE
Q 018606           74 TFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLP-YRSDFGDAAI  143 (353)
Q Consensus        74 ~~l~~l-~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~-~~~~~fD~Vi  143 (353)
                      .++..+ .+|.+|||+|||+|.++..  ..+..|+|+|+|+.+++.|+++    +  ..+.++|+.... ...+.||+|+
T Consensus       206 ~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii  285 (393)
T 4dmg_A          206 RLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVL  285 (393)
T ss_dssp             HHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEE
T ss_pred             HHHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEE
Confidence            344443 4589999999999997532  3456799999999999999886    3  357888887642 2133499999


Q ss_pred             echhhhhcC------ChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          144 SIAVLHHLS------TESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       144 ~~~vl~h~~------~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +...-..-.      .......++..+.++|+|||.|++++....
T Consensus       286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            853211000      011246789999999999999997776654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.91  E-value=4.9e-10  Score=108.71  Aligned_cols=109  Identities=15%  Similarity=0.101  Sum_probs=80.2

Q ss_pred             HHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC----CCCCc
Q 018606           73 ATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY----RSDFG  139 (353)
Q Consensus        73 ~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~----~~~~f  139 (353)
                      ..++..+ ++.+|||+|||+|.++..  .....|+|+|+|+.+++.|+++       +++++++|+.....    ....|
T Consensus       202 ~~~~~~~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~f  280 (382)
T 1wxx_A          202 RLYMERF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERF  280 (382)
T ss_dssp             HHHGGGC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HHHHHhc-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCe
Confidence            4455566 788999999999997532  1256999999999999999886       36899999876531    25789


Q ss_pred             cEEEechhhhhcCC------hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          140 DAAISIAVLHHLST------ESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       140 D~Vi~~~vl~h~~~------~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      |+|++.--......      ......++.++.++|+|||.++++.....
T Consensus       281 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  329 (382)
T 1wxx_A          281 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  329 (382)
T ss_dssp             EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             eEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            99998431111000      02256789999999999999999986643

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.91  E-value=7.8e-10  Score=107.70  Aligned_cols=104  Identities=17%  Similarity=0.123  Sum_probs=78.2

Q ss_pred             HhCCC-CCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCC----CCCCc
Q 018606           76 LNSLP-SGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPY----RSDFG  139 (353)
Q Consensus        76 l~~l~-~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~----~~~~f  139 (353)
                      +..+. ++.+|||+|||+|.++..   .....|+|+|+|+.+++.|+++        +++++.+|+..+..    ..+.|
T Consensus       211 ~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~f  290 (396)
T 2as0_A          211 LEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF  290 (396)
T ss_dssp             HGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCC
Confidence            33333 788999999999997532   3234999999999999999876        46789999876431    25689


Q ss_pred             cEEEech---------hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          140 DAAISIA---------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       140 D~Vi~~~---------vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      |+|++..         +.++..   ....++.++.++|+|||.++++.....
T Consensus       291 D~Vi~dpP~~~~~~~~~~~~~~---~~~~~l~~~~~~LkpgG~lv~~~~~~~  339 (396)
T 2as0_A          291 DIVVLDPPAFVQHEKDLKAGLR---AYFNVNFAGLNLVKDGGILVTCSCSQH  339 (396)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHH---HHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             CEEEECCCCCCCCHHHHHHHHH---HHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence            9999943         222222   257889999999999999998887643

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.90  E-value=9.9e-10  Score=101.25  Aligned_cols=87  Identities=8%  Similarity=-0.086  Sum_probs=70.6

Q ss_pred             CCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           80 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      +.+.+|||||||+|..+.   ..+ .+|+++|+++.|++.|+++           +++++.+|+....   ++||+|++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            345799999999998753   134 8999999999999998764           3678888887764   789999986


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .     .+   +..+++.+.++|+|||++++..
T Consensus       147 ~-----~d---p~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          147 Q-----EP---DIHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             S-----CC---CHHHHHHHHTTEEEEEEEEEEE
T ss_pred             C-----CC---hHHHHHHHHHhcCCCcEEEEEc
Confidence            2     34   3458999999999999999875

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.89  E-value=3.4e-09  Score=101.05  Aligned_cols=96  Identities=16%  Similarity=0.190  Sum_probs=77.1

Q ss_pred             hCCCCCCEEEEECCccccccc-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      ..+.++.+|||+|||+|.++. ......|+|+|+|+.+++.|+++        +++++.+|+..+.   +.||+|++...
T Consensus       191 ~~~~~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP  267 (336)
T 2yx1_A          191 KKVSLNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP  267 (336)
T ss_dssp             HHCCTTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred             HhcCCCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc
Confidence            345688999999999999743 33456999999999999999886        4689999998876   78999998531


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      -.       ...++..+.++|+|||.+++..+...
T Consensus       268 ~~-------~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          268 KF-------AHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             TT-------GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             Hh-------HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence            11       23688999999999999999887654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.87  E-value=2.5e-09  Score=105.98  Aligned_cols=107  Identities=17%  Similarity=0.188  Sum_probs=78.6

Q ss_pred             hCCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~-~~~~~fD~Vi  143 (353)
                      ....++.+|||+|||+|..+.    . .....|+|+|+++.+++.++++       ++.++.+|+..++ ..++.||+|+
T Consensus       101 L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il  180 (456)
T 3m4x_A          101 AAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIV  180 (456)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEE
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEE
Confidence            356788999999999998542    2 3457999999999999999876       4677888887765 2367899999


Q ss_pred             ech------hhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          144 SIA------VLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       144 ~~~------vl~h~~~~-------------e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +..      ++.+-++.             .....+|.++.++|||||+|+.++-+...
T Consensus       181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  239 (456)
T 3m4x_A          181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP  239 (456)
T ss_dssp             EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred             ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence            732      22211110             01237899999999999999998766544

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.87  E-value=1.1e-09  Score=114.23  Aligned_cols=107  Identities=13%  Similarity=0.119  Sum_probs=80.4

Q ss_pred             HHHHHHhCCCCCCEEEEECCcccccccc--CCC-cEEEEEeCCHHHHHHHHHc---------CCeEEEeeCCC-CCCCCC
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR---------GHEVLVADAVN-LPYRSD  137 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~-~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~-l~~~~~  137 (353)
                      ....++..+.+|.+|||+|||+|.++..  ..+ .+|+++|+|+.+++.|+++         +++++++|+.. ++...+
T Consensus       529 ~~r~~l~~~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~  608 (703)
T 3v97_A          529 IARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANE  608 (703)
T ss_dssp             HHHHHHHHHCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCC
T ss_pred             HHHHHHHHhcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCC
Confidence            3344444455789999999999997532  234 4799999999999999986         26789999887 344467


Q ss_pred             CccEEEech-----------hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          138 FGDAAISIA-----------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       138 ~fD~Vi~~~-----------vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +||+|++..           ++.+.   .....++..+.++|+|||+|+++.-.
T Consensus       609 ~fD~Ii~DPP~f~~~~~~~~~~~~~---~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          609 QFDLIFIDPPTFSNSKRMEDAFDVQ---RDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CEEEEEECCCSBC-------CCBHH---HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CccEEEECCccccCCccchhHHHHH---HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            899999843           12222   22678899999999999999988754

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.87  E-value=7.9e-10  Score=107.42  Aligned_cols=103  Identities=13%  Similarity=0.113  Sum_probs=75.5

Q ss_pred             CCCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC-C-C--CCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL-P-Y--RSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l-~-~--~~~~fD~Vi  143 (353)
                      .++.+|||+|||+|.++..  ..++ .|+|+|+|+.|++.|+++         +++++++|+... + +  ....||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            6788999999999997532  2244 899999999999999875         357899998762 2 1  245899999


Q ss_pred             echhh-----hhcCCh-hHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          144 SIAVL-----HHLSTE-SRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       144 ~~~vl-----~h~~~~-e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +.--.     .+.... .....++..+.++|+|||+++++.....
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~  335 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  335 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            84322     222221 2245678888999999999999986543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.85  E-value=2.2e-09  Score=104.51  Aligned_cols=103  Identities=15%  Similarity=0.064  Sum_probs=75.9

Q ss_pred             CCCCEEEEECCcccccccc--CC-CcEEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCCC----CCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NP-DCFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLPY----RSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~-~~~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~l~~----~~~~fD~Vi  143 (353)
                      .++.+|||+|||+|.++..  .. ...|+|+|+|+.+++.|+++    +     ++++.+|+..+..    ....||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            5788999999999997532  23 35999999999999999875    3     4688999876421    146899999


Q ss_pred             echhhhh------cCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          144 SIAVLHH------LSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       144 ~~~vl~h------~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +.--...      .........++.++.++|+|||+++++.....
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  343 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL  343 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            9632110      00012267889999999999999999876543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.84  E-value=3.3e-09  Score=98.48  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=78.7

Q ss_pred             HHHhCCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEE
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      .+...+.+|.+|||+|||+|.++.   .....+|+++|+++.+++.++++        .++++.+|+..++. .+.||.|
T Consensus       118 ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~V  196 (278)
T 3k6r_A          118 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRI  196 (278)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEE
T ss_pred             HHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEE
Confidence            344456889999999999999853   23446999999999999999886        36889999988764 5789999


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ++..-    ..   ...+|..+.++||+||.+.+..+..+
T Consensus       197 i~~~p----~~---~~~~l~~a~~~lk~gG~ih~~~~~~e  229 (278)
T 3k6r_A          197 LMGYV----VR---THEFIPKALSIAKDGAIIHYHNTVPE  229 (278)
T ss_dssp             EECCC----SS---GGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             EECCC----Cc---HHHHHHHHHHHcCCCCEEEEEeeecc
Confidence            87532    22   24578888899999999988766543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.82  E-value=8.8e-09  Score=96.59  Aligned_cols=70  Identities=23%  Similarity=0.290  Sum_probs=53.7

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .+.++.+|||||||+|.++..  ..+..|+|+|+++.|++.|+++       +++++.+|+..++++  .||+|++....
T Consensus        39 ~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~py  116 (299)
T 2h1r_A           39 KIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTANIPY  116 (299)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEECCG
T ss_pred             CCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEcCCc
Confidence            456788999999999998652  3467999999999999999875       478899999988763  79999996554


Q ss_pred             h
Q 018606          149 H  149 (353)
Q Consensus       149 ~  149 (353)
                      +
T Consensus       117 ~  117 (299)
T 2h1r_A          117 K  117 (299)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.80  E-value=1.2e-09  Score=99.38  Aligned_cols=65  Identities=17%  Similarity=0.273  Sum_probs=52.2

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCC-CCccEEEe
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS-DFGDAAIS  144 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~-~~fD~Vi~  144 (353)
                      +.++.+|||||||+|.++..  ..+..|+|+|+++.|++.++++     +++++++|+..+++++ ..| .|++
T Consensus        28 ~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~vv~  100 (244)
T 1qam_A           28 LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-KIFG  100 (244)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-EEEE
T ss_pred             CCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-EEEE
Confidence            45778999999999998642  3347999999999999999986     5789999999998764 455 3444

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.76  E-value=5.8e-11  Score=108.08  Aligned_cols=99  Identities=9%  Similarity=0.137  Sum_probs=72.8

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCC-CCccEEEec----
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS-DFGDAAISI----  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~-~~fD~Vi~~----  145 (353)
                      .+.++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++     +++++++|+..++++. ++| .|+++    
T Consensus        26 ~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~  104 (245)
T 1yub_A           26 NLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYH  104 (245)
T ss_dssp             CCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCSS
T ss_pred             CCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCcc
Confidence            356788999999999998652  2347999999999999988775     4788999999988764 678 56553    


Q ss_pred             -------hhhhhcCChhHHHHHH----HHHHhccccCcEEEEEEcC
Q 018606          146 -------AVLHHLSTESRRKKAI----EELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       146 -------~vl~h~~~~e~~~~~l----~el~rvLkpgG~lli~~~~  180 (353)
                             .++.|...   ....+    +.+.|+|+|||.+.+....
T Consensus       105 ~~~~~~~~~~~~~~~---~~~~lm~q~e~a~rll~~~G~l~v~~~~  147 (245)
T 1yub_A          105 LSTQIIKKVVFESRA---SDIYLIVEEGFYKRTLDIHRTLGLLLHT  147 (245)
T ss_dssp             SCHHHHHHHHHHCCC---EEEEEEEESSHHHHHHCGGGSHHHHTTT
T ss_pred             ccHHHHHHHHhCCCC---CeEEEEeeHHHHHHHhCCCCchhhhhee
Confidence                   12333222   22344    6789999999998776543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.73  E-value=1.2e-08  Score=100.82  Aligned_cols=132  Identities=14%  Similarity=0.216  Sum_probs=90.0

Q ss_pred             HHHHHHHHhhcccccc------ccccChHHHHHHHh---CCCCCCEEEEECCcccccccc----C-------------CC
Q 018606           48 KYVHRVYDAIAPHFSS------TRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL----N-------------PD  101 (353)
Q Consensus        48 ~~v~~~yd~~a~~y~~------~~~~~~~~~~~~l~---~l~~~~~VLDvGCG~G~~~~~----~-------------~~  101 (353)
                      +.+..+|+.+...|..      ..+...+.+..++.   ...++.+|||+|||+|.++..    .             ..
T Consensus       129 d~~G~~yE~ll~~~~~~~~~~~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~  208 (445)
T 2okc_A          129 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD  208 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccccCCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcC
Confidence            4556666665554422      11222233333322   345678999999999998631    0             34


Q ss_pred             cEEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChh--------------HHH
Q 018606          102 CFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES--------------RRK  158 (353)
Q Consensus       102 ~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e--------------~~~  158 (353)
                      ..++|+|+++.+++.|+.+         ...+.++|....+.. ..||+|+++-.+.+.....              ...
T Consensus       209 ~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~  287 (445)
T 2okc_A          209 KALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQL  287 (445)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHH
Confidence            6899999999999999875         347899999887653 4899999976555432211              124


Q ss_pred             HHHHHHHhccccCcEEEEEEcC
Q 018606          159 KAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       159 ~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .++..+.+.|+|||++.+.++.
T Consensus       288 ~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          288 NFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEH
T ss_pred             HHHHHHHHHhccCCEEEEEECC
Confidence            7899999999999999988753

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.70  E-value=3.1e-08  Score=97.41  Aligned_cols=92  Identities=21%  Similarity=0.190  Sum_probs=69.3

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      +.++.+|||+|||+|.++..  ..+..|+|+|+|+.|++.|+++    +  ++|+.+|+..+...  .||+|++.-.-..
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPPr~g  365 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK--GFDTVIVDPPRAG  365 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT--TCSEEEECCCTTC
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc--CCCEEEEcCCccc
Confidence            56788999999999998542  3356999999999999999876    3  68999999887532  8999998543211


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +     ...++..+. .|+|||+++++.
T Consensus       366 ~-----~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          366 L-----HPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             S-----CHHHHHHHH-HHCCSEEEEEES
T ss_pred             h-----HHHHHHHHH-hcCCCcEEEEEC
Confidence            1     123555554 589999998875

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.69  E-value=1.3e-08  Score=99.16  Aligned_cols=98  Identities=24%  Similarity=0.375  Sum_probs=74.1

Q ss_pred             CCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhh-----
Q 018606           80 PSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLH-----  149 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~-----  149 (353)
                      .++.+|||+|||+|.++..     .++..++|+|+++.+++.|  .+++++++|+...+. .+.||+|+++--..     
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~  114 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--PWAEGILADFLLWEP-GEAFDLILGNPPYGIVGEA  114 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--TTEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCT
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--CCCcEEeCChhhcCc-cCCCCEEEECcCccCcccc
Confidence            3467999999999998642     2568999999999999887  568899999988653 46899999952111     


Q ss_pred             -----hcCChhH----------------HHHHHHHHHhccccCcEEEEEEcC
Q 018606          150 -----HLSTESR----------------RKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       150 -----h~~~~e~----------------~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                           |+....+                ...++..+.++|+|||++++.+..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A          115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence                 1211111                226799999999999999998865

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.67  E-value=7.9e-08  Score=94.70  Aligned_cols=93  Identities=14%  Similarity=0.199  Sum_probs=68.5

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC----CCCCCCCccEEEec
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN----LPYRSDFGDAAISI  145 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~----l~~~~~~fD~Vi~~  145 (353)
                      +.++.+|||+|||+|.++..  ..+..|+|+|+|+.|++.|+++       +++|+.+|+..    +++.++.||+|++.
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            45678999999999998542  3367999999999999999875       47899999987    34566789999984


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ---..      ...++..+. .++|+++++++.
T Consensus       364 PPr~g------~~~~~~~l~-~~~p~~ivyvsc  389 (433)
T 1uwv_A          364 PARAG------AAGVMQQII-KLEPIRIVYVSC  389 (433)
T ss_dssp             CCTTC------CHHHHHHHH-HHCCSEEEEEES
T ss_pred             CCCcc------HHHHHHHHH-hcCCCeEEEEEC
Confidence            22111      123444444 368988887764

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.63  E-value=2e-07  Score=87.88  Aligned_cols=106  Identities=14%  Similarity=0.097  Sum_probs=73.7

Q ss_pred             hCCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCC---CCccE
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRS---DFGDA  141 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~---~~fD~  141 (353)
                      ..+.+|.+|||+|||+|..+.    . .+...|+++|+++.+++.++++       ++.++.+|+..++...   ..||.
T Consensus        98 l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~  177 (309)
T 2b9e_A           98 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHY  177 (309)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred             hCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCE
Confidence            356789999999999998643    2 3557999999999999998876       4688999998875432   57999


Q ss_pred             EEec------hhhhhcCCh--------hH-------HHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          142 AISI------AVLHHLSTE--------SR-------RKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       142 Vi~~------~vl~h~~~~--------e~-------~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      |++.      +++..-++.        ++       ..++|..+.++|+ ||+|+.++-+...
T Consensus       178 Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~  239 (309)
T 2b9e_A          178 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ  239 (309)
T ss_dssp             EEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG
T ss_pred             EEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh
Confidence            9972      233221110        01       2356778888887 9998887766543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.62  E-value=9.8e-08  Score=92.88  Aligned_cols=104  Identities=18%  Similarity=0.170  Sum_probs=75.6

Q ss_pred             hCCCCCCEEEEECCccccccc--------cCCC----------------------------------cEEEEEeCCHHHH
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG--------LNPD----------------------------------CFFVGCDISPSLI  114 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~--------~~~~----------------------------------~~v~gvD~S~~~l  114 (353)
                      ....++..|||++||+|.++.        ..||                                  ..|+|+|+++.|+
T Consensus       197 ~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al  276 (393)
T 3k0b_A          197 TSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLI  276 (393)
T ss_dssp             SCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred             hCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHH
Confidence            355778899999999999742        1122                                  4699999999999


Q ss_pred             HHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhhh-hcCChhHHHHHHHHHHhcccc--CcEEEEEEcCC
Q 018606          115 KICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH-HLSTESRRKKAIEELVRVVKK--GSLVLITVWAV  181 (353)
Q Consensus       115 ~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~-h~~~~e~~~~~l~el~rvLkp--gG~lli~~~~~  181 (353)
                      +.|+++        .+++.++|+.+++.+ ..||+|+++--.. .+.+.+....+..++.+.||+  ||.+++.+...
T Consensus       277 ~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  353 (393)
T 3k0b_A          277 EIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE  353 (393)
T ss_dssp             HHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred             HHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            999986        378999999998864 5899999973211 122222245566667777766  99998887643

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.60  E-value=1.4e-07  Score=91.52  Aligned_cols=104  Identities=13%  Similarity=0.131  Sum_probs=78.3

Q ss_pred             hCCCCCCEEEEECCccccccc--------cCCC----------------------------------cEEEEEeCCHHHH
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG--------LNPD----------------------------------CFFVGCDISPSLI  114 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~--------~~~~----------------------------------~~v~gvD~S~~~l  114 (353)
                      ....++..|||.+||+|.++.        ..||                                  ..++|+|+++.|+
T Consensus       190 ~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al  269 (384)
T 3ldg_A          190 SNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMV  269 (384)
T ss_dssp             TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHH
T ss_pred             hCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHH
Confidence            355778899999999999742        1122                                  4699999999999


Q ss_pred             HHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhhh-hcCChhHHHHHHHHHHhcccc--CcEEEEEEcCC
Q 018606          115 KICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH-HLSTESRRKKAIEELVRVVKK--GSLVLITVWAV  181 (353)
Q Consensus       115 ~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~-h~~~~e~~~~~l~el~rvLkp--gG~lli~~~~~  181 (353)
                      +.|+++        .+++.++|+.+++.+ ..||+|+++--.. -+.+.+....+..++.+.||+  ||.+++.+...
T Consensus       270 ~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  346 (384)
T 3ldg_A          270 EIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDT  346 (384)
T ss_dssp             HHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred             HHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence            999986        268999999998864 4899999973221 133434466777777778776  99998887643

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.60  E-value=3.9e-08  Score=92.02  Aligned_cols=72  Identities=17%  Similarity=0.127  Sum_probs=60.6

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      .+.++.+|||||||+|.++..  ..+.+|+|+|+++.|++.++++     +++++++|+..+++++..||+|+++...+
T Consensus        47 ~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~  125 (295)
T 3gru_A           47 NLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPYQ  125 (295)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEEECCGG
T ss_pred             CCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEEEeCccc
Confidence            456788999999999998642  3367999999999999999876     68999999999998888899999875443

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.58  E-value=1e-07  Score=92.52  Aligned_cols=103  Identities=22%  Similarity=0.215  Sum_probs=76.4

Q ss_pred             CCCCCCEEEEECCcccccccc--------CC----------------------------------CcEEEEEeCCHHHHH
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--------NP----------------------------------DCFFVGCDISPSLIK  115 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--------~~----------------------------------~~~v~gvD~S~~~l~  115 (353)
                      ...++..|||+|||+|.++..        .|                                  ...|+|+|+++.|++
T Consensus       192 ~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~  271 (385)
T 3ldu_A          192 PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESID  271 (385)
T ss_dssp             CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHH
T ss_pred             CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHH
Confidence            456788999999999997421        12                                  157999999999999


Q ss_pred             HHHHc--------CCeEEEeeCCCCCCCCCCccEEEechhhh-hcCChhHHHHHHHHHHhcccc--CcEEEEEEcCC
Q 018606          116 ICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH-HLSTESRRKKAIEELVRVVKK--GSLVLITVWAV  181 (353)
Q Consensus       116 ~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~-h~~~~e~~~~~l~el~rvLkp--gG~lli~~~~~  181 (353)
                      .|+++        .++|.++|+.+++.+ ..||+|+++--.. .+.+.+....+..++.++||+  ||.+++.+...
T Consensus       272 ~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  347 (385)
T 3ldu_A          272 IARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE  347 (385)
T ss_dssp             HHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred             HHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence            99986        368999999998764 5899999964322 222223356677777778876  88888887643

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.51  E-value=2.2e-07  Score=85.15  Aligned_cols=67  Identities=12%  Similarity=0.149  Sum_probs=54.5

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCC----CCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS----DFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~----~~fD~Vi~~  145 (353)
                      .+.++.+|||||||+|.++..  ..+.+|+|+|+++.|++.++++     +++++++|+..+++++    +.|| |+++
T Consensus        26 ~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           26 HPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR-VVGN  103 (255)
T ss_dssp             CCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE-EEEE
T ss_pred             CCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE-EEec
Confidence            456788999999999998652  4457999999999999999886     6799999999988643    4677 4443

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.45  E-value=5.9e-08  Score=89.05  Aligned_cols=111  Identities=13%  Similarity=0.111  Sum_probs=74.1

Q ss_pred             HHHHHHHh--CCCCCCEEEEECCcccccccc---CCC-cEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCC
Q 018606           70 PKVATFLN--SLPSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDF  138 (353)
Q Consensus        70 ~~~~~~l~--~l~~~~~VLDvGCG~G~~~~~---~~~-~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~  138 (353)
                      -++.++..  .+.++.+|||||||+|.+...   ..+ ..+.|+|++..+.......     ++..+..++....+..+.
T Consensus        61 ~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~  140 (277)
T 3evf_A           61 AKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVK  140 (277)
T ss_dssp             HHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred             HHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCC
Confidence            34444444  467888999999999998752   333 4788888885541111111     344556666556677889


Q ss_pred             ccEEEechhhh---hcCChhHHHHHHHHHHhccccC-cEEEEEEcC
Q 018606          139 GDAAISIAVLH---HLSTESRRKKAIEELVRVVKKG-SLVLITVWA  180 (353)
Q Consensus       139 fD~Vi~~~vl~---h~~~~e~~~~~l~el~rvLkpg-G~lli~~~~  180 (353)
                      ||+|+|..+.+   +..+..+...+|..+.++|+|| |.|++-+|.
T Consensus       141 ~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          141 CDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             ccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            99999977554   1112222234578889999999 999999998

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.41  E-value=4.1e-07  Score=87.71  Aligned_cols=102  Identities=15%  Similarity=0.077  Sum_probs=72.2

Q ss_pred             CCEEEEECCccccccc-------------------cCCCcEEEEEeCCHHHHHHH-HHc------------------CCe
Q 018606           82 GSLVLDAGCGNGKYLG-------------------LNPDCFFVGCDISPSLIKIC-VDR------------------GHE  123 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~-------------------~~~~~~v~gvD~S~~~l~~a-~~~------------------~i~  123 (353)
                      ..+|+|+|||+|..+.                   ..|...|...|+-.+.-... +..                  +-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            4689999999998531                   02678999999877653221 110                  112


Q ss_pred             EEEeeCCC---CCCCCCCccEEEechhhhhcCChh-----------------------------------HHHHHHHHHH
Q 018606          124 VLVADAVN---LPYRSDFGDAAISIAVLHHLSTES-----------------------------------RRKKAIEELV  165 (353)
Q Consensus       124 ~~~~D~~~---l~~~~~~fD~Vi~~~vl~h~~~~e-----------------------------------~~~~~l~el~  165 (353)
                      |+.+....   -.+++++||+|+++.+|||++...                                   +...+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433332   347899999999999999998321                                   2455788999


Q ss_pred             hccccCcEEEEEEcCCCc
Q 018606          166 RVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       166 rvLkpgG~lli~~~~~~~  183 (353)
                      +.|+|||++++++.+...
T Consensus       213 ~eL~pGG~mvl~~~gr~~  230 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTS  230 (374)
T ss_dssp             HHEEEEEEEEEEEEECCC
T ss_pred             HHhCCCCEEEEEEecCCC
Confidence            999999999999987644

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.40  E-value=1.9e-07  Score=86.26  Aligned_cols=69  Identities=14%  Similarity=0.160  Sum_probs=56.4

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCC-CccEEEechh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSD-FGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l~~~~~-~fD~Vi~~~v  147 (353)
                      .+.++ +|||||||+|.++..  ..+.+|+|+|+++.|++.++++    +++++++|+..+++++. .+|.|+++--
T Consensus        44 ~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~NlP  119 (271)
T 3fut_A           44 RPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVANLP  119 (271)
T ss_dssp             CCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEEEEC
T ss_pred             CCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEecCc
Confidence            45678 999999999998652  3457999999999999999886    58999999999887643 6788777643

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.38  E-value=2.2e-07  Score=94.03  Aligned_cols=135  Identities=7%  Similarity=0.134  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHhhcccccc------ccccChHHHHHHHh---CCCCCCEEEEECCcccccccc--------C---------
Q 018606           46 EKKYVHRVYDAIAPHFSS------TRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL--------N---------   99 (353)
Q Consensus        46 e~~~v~~~yd~~a~~y~~------~~~~~~~~~~~~l~---~l~~~~~VLDvGCG~G~~~~~--------~---------   99 (353)
                      +.+.+..+|+.+...|..      ..+...+.+..++.   ...++.+|||.|||+|.++..        .         
T Consensus       125 ~~d~lG~~YE~ll~~~a~~~~~~~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~  204 (541)
T 2ar0_A          125 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD  204 (541)
T ss_dssp             -------------------------CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHH
T ss_pred             ChhHHHHHHHHHHHHHHHhccccCCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHH
Confidence            345666777776665532      11222233333322   345678999999999997531        1         


Q ss_pred             -----CCcEEEEEeCCHHHHHHHHHc----C--------CeEEEeeCCCCC-CCCCCccEEEechhhhhcCC--------
Q 018606          100 -----PDCFFVGCDISPSLIKICVDR----G--------HEVLVADAVNLP-YRSDFGDAAISIAVLHHLST--------  153 (353)
Q Consensus       100 -----~~~~v~gvD~S~~~l~~a~~~----~--------i~~~~~D~~~l~-~~~~~fD~Vi~~~vl~h~~~--------  153 (353)
                           ....++|+|+++.+++.|+.+    +        ..+.++|....+ .....||+|+++--+.....        
T Consensus       205 ~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~  284 (541)
T 2ar0_A          205 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFV  284 (541)
T ss_dssp             HHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCS
T ss_pred             HHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcC
Confidence                 124799999999999999875    2        568899987654 34578999999654433211        


Q ss_pred             ---hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          154 ---ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       154 ---~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                         ...-..++..+.+.|+|||++.+.++.
T Consensus       285 ~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~  314 (541)
T 2ar0_A          285 HPTSNKQLCFMQHIIETLHPGGRAAVVVPD  314 (541)
T ss_dssp             SCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence               111247899999999999999998754

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.36  E-value=7.9e-07  Score=81.09  Aligned_cols=59  Identities=19%  Similarity=0.300  Sum_probs=49.3

Q ss_pred             CCCCCCEEEEECCcccccccc--CC-CcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCC
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NP-DCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRS  136 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~-~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~~~~  136 (353)
                      .+.++.+|||||||+|.++..  .. ..+|+|+|+++.|++.++++   +++++++|+..+++++
T Consensus        28 ~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           28 NIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             TCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred             CCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence            345788999999999998642  33 47999999999999999886   5789999999998764

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.34  E-value=1.7e-07  Score=90.25  Aligned_cols=91  Identities=12%  Similarity=0.084  Sum_probs=66.6

Q ss_pred             CCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCC--------------
Q 018606           82 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRS--------------  136 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~--------------  136 (353)
                      +.+|||+|||+|.++..  .....|+|+|+|+.+++.|+++       +++|+.+|+..+.  +..              
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~  293 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS  293 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred             CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence            57899999999998532  3345999999999999999875       4688999987642  211              


Q ss_pred             CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          137 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ..||+|++.-      +   +..+..++.+.|+++|++++...+.
T Consensus       294 ~~fD~Vv~dP------P---r~g~~~~~~~~l~~~g~ivyvsc~p  329 (369)
T 3bt7_A          294 YQCETIFVDP------P---RSGLDSETEKMVQAYPRILYISCNP  329 (369)
T ss_dssp             CCEEEEEECC------C---TTCCCHHHHHHHTTSSEEEEEESCH
T ss_pred             CCCCEEEECc------C---ccccHHHHHHHHhCCCEEEEEECCH
Confidence            3799998742      1   2234566777788999988776543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.29  E-value=2e-07  Score=85.58  Aligned_cols=73  Identities=14%  Similarity=0.066  Sum_probs=55.8

Q ss_pred             CCCCCCEEEEECCccccccc--cCCCcEEEEEeCCH-------HHHHHHHHc-------C-CeEEEeeCCCC-C-CCC--
Q 018606           78 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISP-------SLIKICVDR-------G-HEVLVADAVNL-P-YRS--  136 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~-------~~l~~a~~~-------~-i~~~~~D~~~l-~-~~~--  136 (353)
                      .+.++.+|||+|||+|.++.  ...+..|+|+|+++       .+++.|+++       + ++++++|+..+ + +++  
T Consensus        80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~  159 (258)
T 2r6z_A           80 NHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQ  159 (258)
T ss_dssp             TGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             CcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccC
Confidence            34567899999999999753  23467999999999       999988764       3 89999998874 3 444  


Q ss_pred             CCccEEEechhhhh
Q 018606          137 DFGDAAISIAVLHH  150 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h  150 (353)
                      ++||+|++.-.+.+
T Consensus       160 ~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          160 GKPDIVYLDPMYPE  173 (258)
T ss_dssp             CCCSEEEECCCC--
T ss_pred             CCccEEEECCCCCC
Confidence            68999999765554

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.25  E-value=3.8e-06  Score=81.15  Aligned_cols=103  Identities=19%  Similarity=0.119  Sum_probs=74.2

Q ss_pred             CCEEEEECCccccccc------------c---------CCCcEEEEEeCC-----------HHHHHHHHHc-----CCeE
Q 018606           82 GSLVLDAGCGNGKYLG------------L---------NPDCFFVGCDIS-----------PSLIKICVDR-----GHEV  124 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~------------~---------~~~~~v~gvD~S-----------~~~l~~a~~~-----~i~~  124 (353)
                      ..+|+|+||++|..+.            .         .|...|+..|+-           +.+.+.+++.     +--|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            4689999999998531            0         256799999998           5555554332     2356


Q ss_pred             EEeeCCC---CCCCCCCccEEEechhhhhcCChh-H-----------------------------------HHHHHHHHH
Q 018606          125 LVADAVN---LPYRSDFGDAAISIAVLHHLSTES-R-----------------------------------RKKAIEELV  165 (353)
Q Consensus       125 ~~~D~~~---l~~~~~~fD~Vi~~~vl~h~~~~e-~-----------------------------------~~~~l~el~  165 (353)
                      +.+....   -.|+++++|+|+++++|||++... .                                   ...+|+-.+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665544   358899999999999999987531 0                                   112266679


Q ss_pred             hccccCcEEEEEEcCCCcc
Q 018606          166 RVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       166 rvLkpgG~lli~~~~~~~~  184 (353)
                      +.|+|||++++.+.+....
T Consensus       213 ~eL~pGG~mvl~~~gr~~~  231 (384)
T 2efj_A          213 EELISRGRMLLTFICKEDE  231 (384)
T ss_dssp             HHEEEEEEEEEEEECCCTT
T ss_pred             HHhccCCeEEEEEecCCCc
Confidence            9999999999999876543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.25  E-value=3.7e-07  Score=88.30  Aligned_cols=91  Identities=18%  Similarity=0.073  Sum_probs=68.9

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc---C-------------------CeEEEeeCCCCCC
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---G-------------------HEVLVADAVNLPY  134 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~---~-------------------i~~~~~D~~~l~~  134 (353)
                      ++.+|||+|||+|.+..    ..++..|+++|+++.+++.++++   +                   ++++++|+..+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            57899999999999642    23557899999999999998865   2                   5678888766431


Q ss_pred             -CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          135 -RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       135 -~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                       ..+.||+|++.- .   ..   ...++..+.+.|++||+++++.
T Consensus       127 ~~~~~fD~I~lDP-~---~~---~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDP-F---GS---PMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECC-S---SC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeCC-C---CC---HHHHHHHHHHhcCCCCEEEEEe
Confidence             135799999643 1   11   2578899999999999888875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.24  E-value=7.8e-07  Score=83.44  Aligned_cols=76  Identities=17%  Similarity=0.314  Sum_probs=58.8

Q ss_pred             HHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC--CC--
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YR--  135 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~--~~--  135 (353)
                      ..+...+ .+.++.+|||+|||+|.++.    ..++..|+|+|+|+.|++.|+++      +++++++|+..++  +.  
T Consensus        16 ~e~l~~L-~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~   94 (301)
T 1m6y_A           16 REVIEFL-KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL   94 (301)
T ss_dssp             HHHHHHH-CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred             HHHHHhc-CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence            4445555 35678899999999999753    24578999999999999999886      4789999998865  22  


Q ss_pred             -CCCccEEEech
Q 018606          136 -SDFGDAAISIA  146 (353)
Q Consensus       136 -~~~fD~Vi~~~  146 (353)
                       ...||.|++..
T Consensus        95 g~~~~D~Vl~D~  106 (301)
T 1m6y_A           95 GIEKVDGILMDL  106 (301)
T ss_dssp             TCSCEEEEEEEC
T ss_pred             CCCCCCEEEEcC
Confidence             15799998754

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.21  E-value=7.8e-07  Score=91.32  Aligned_cols=93  Identities=13%  Similarity=0.118  Sum_probs=68.6

Q ss_pred             CCEEEEECCcccccc----cc----C---------CCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC--
Q 018606           82 GSLVLDAGCGNGKYL----GL----N---------PDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR--  135 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~----~~----~---------~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~--  135 (353)
                      +..|||||||+|.+.    .+    .         ...+|+|+|.++.++..++.+       .|+++.+|++++.++  
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            458999999999983    11    1         234999999998766554433       489999999998763  


Q ss_pred             ---CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606          136 ---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       136 ---~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                         .+.+|+||+-.. ..+.+.|...++|..+.|.|||||+++
T Consensus       490 ~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          490 DRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence               578999999554 223333435678888899999999865

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.21  E-value=1e-06  Score=81.79  Aligned_cols=59  Identities=20%  Similarity=0.260  Sum_probs=48.6

Q ss_pred             CCCCCCEEEEECCcccccccc--CC----CcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCC
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NP----DCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRS  136 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~----~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~~~~  136 (353)
                      .+.++.+|||||||+|.++..  ..    +..|+|+|+++.|++.++++   +++++++|+..+++++
T Consensus        39 ~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            456788999999999998642  11    24499999999999999886   6899999999988653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.21  E-value=4.8e-07  Score=82.73  Aligned_cols=69  Identities=9%  Similarity=0.049  Sum_probs=53.3

Q ss_pred             CCCCCCEEEEECCccccccccCCCcE--EEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCC-----CccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLGLNPDCF--FVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSD-----FGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~~~~~~--v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~-----~fD~Vi~~  145 (353)
                      .+.++.+|||||||+|.++....+..  |+|+|+++.|++.++++     +++++++|+..+++++.     ..|.|+++
T Consensus        18 ~~~~~~~VLEIG~G~G~lt~l~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsN   97 (252)
T 1qyr_A           18 NPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGN   97 (252)
T ss_dssp             CCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEEEEE
T ss_pred             CCCCcCEEEEECCCCcHHHHhhhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEEEEC
Confidence            45678899999999999865322346  99999999999999986     57899999999876431     23566655


Q ss_pred             h
Q 018606          146 A  146 (353)
Q Consensus       146 ~  146 (353)
                      .
T Consensus        98 l   98 (252)
T 1qyr_A           98 L   98 (252)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.21  E-value=1.2e-05  Score=81.33  Aligned_cols=102  Identities=16%  Similarity=0.124  Sum_probs=75.1

Q ss_pred             CCCCEEEEECCcccccccc-------CCCcEEEEEeCCHHHHHHHHHc----CC-----eEEEeeCCCC--C-CCCCCcc
Q 018606           80 PSGSLVLDAGCGNGKYLGL-------NPDCFFVGCDISPSLIKICVDR----GH-----EVLVADAVNL--P-YRSDFGD  140 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~-------~~~~~v~gvD~S~~~l~~a~~~----~i-----~~~~~D~~~l--~-~~~~~fD  140 (353)
                      .++.+|||.+||+|.++..       .....++|+|+++.++..|+.+    ++     .+.++|....  | .....||
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD  299 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD  299 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence            3678999999999998642       2357999999999999999875    44     5889998876  4 4567899


Q ss_pred             EEEechhhh--h-----------------cCCh-hHHHHHHHHHHhccc-cCcEEEEEEcCC
Q 018606          141 AAISIAVLH--H-----------------LSTE-SRRKKAIEELVRVVK-KGSLVLITVWAV  181 (353)
Q Consensus       141 ~Vi~~~vl~--h-----------------~~~~-e~~~~~l~el~rvLk-pgG~lli~~~~~  181 (353)
                      +|+++--+.  +                 ++.. ..-..++..+.+.|+ |||++.+.++..
T Consensus       300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            999852111  0                 1110 001358999999999 999999888653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.19  E-value=3.6e-06  Score=87.74  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=72.0

Q ss_pred             CCCCCCEEEEECCccccccc--------cCC--------------------------------------CcEEEEEeCCH
Q 018606           78 SLPSGSLVLDAGCGNGKYLG--------LNP--------------------------------------DCFFVGCDISP  111 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~--------~~~--------------------------------------~~~v~gvD~S~  111 (353)
                      ...++..|||.+||+|.++.        ..|                                      ...++|+|+++
T Consensus       187 ~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~  266 (703)
T 3v97_A          187 GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDA  266 (703)
T ss_dssp             TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCH
T ss_pred             CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCH
Confidence            45678899999999999742        112                                      25799999999


Q ss_pred             HHHHHHHHc----C----CeEEEeeCCCCC--CCCCCccEEEechhhh-hcCChhHHHHH---HHHHHhccccCcEEEEE
Q 018606          112 SLIKICVDR----G----HEVLVADAVNLP--YRSDFGDAAISIAVLH-HLSTESRRKKA---IEELVRVVKKGSLVLIT  177 (353)
Q Consensus       112 ~~l~~a~~~----~----i~~~~~D~~~l~--~~~~~fD~Vi~~~vl~-h~~~~e~~~~~---l~el~rvLkpgG~lli~  177 (353)
                      .|++.|+.+    +    ++|.++|+..+.  ...+.||+|+++--.. -+.+.+....+   +.++.+.+.|||.+++.
T Consensus       267 ~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~il  346 (703)
T 3v97_A          267 RVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLF  346 (703)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence            999999987    2    689999999874  3344899999973221 11222223334   44555555689999998


Q ss_pred             EcCC
Q 018606          178 VWAV  181 (353)
Q Consensus       178 ~~~~  181 (353)
                      +...
T Consensus       347 t~~~  350 (703)
T 3v97_A          347 SASP  350 (703)
T ss_dssp             ESCH
T ss_pred             eCCH
Confidence            7543

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.16  E-value=5.6e-06  Score=79.30  Aligned_cols=102  Identities=14%  Similarity=0.078  Sum_probs=77.1

Q ss_pred             CCEEEEECCccccccc--------------------cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC--
Q 018606           82 GSLVLDAGCGNGKYLG--------------------LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN--  131 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~--------------------~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~--  131 (353)
                      .-+|+|+||++|..+.                    ..|...|+..|+..+....+-+.        +..|+.+....  
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            3689999999998641                    13457999999988877665544        22455555444  


Q ss_pred             -CCCCCCCccEEEechhhhhcCChh------------------------------HHHHHHHHHHhccccCcEEEEEEcC
Q 018606          132 -LPYRSDFGDAAISIAVLHHLSTES------------------------------RRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       132 -l~~~~~~fD~Vi~~~vl~h~~~~e------------------------------~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                       -.++++++|+|+++++|||++...                              +...+|+..++.|+|||++++.+.+
T Consensus       132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~g  211 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG  211 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred             hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEec
Confidence             458899999999999999987521                              2345688899999999999999987


Q ss_pred             CCc
Q 018606          181 VEQ  183 (353)
Q Consensus       181 ~~~  183 (353)
                      ...
T Consensus       212 r~~  214 (359)
T 1m6e_X          212 RRS  214 (359)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.15  E-value=1.1e-06  Score=85.39  Aligned_cols=92  Identities=18%  Similarity=0.001  Sum_probs=70.4

Q ss_pred             CCCCEEEEECCccccccc----cCCC-cEEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCC--CCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP--YRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~-~~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~l~--~~~~~fD~Vi  143 (353)
                      .+|.+|||++||+|.+..    ...+ ..|+++|+++.+++.++++    +     ++++.+|+..+.  ...+.||+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            467899999999998742    1345 5899999999999999886    2     678888876531  1245799999


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +.-    ...   ...++..+.+.|++||+++++.
T Consensus       131 lDP----~g~---~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          131 LDP----FGT---PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             ECC----SSC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECC----CcC---HHHHHHHHHHHhCCCCEEEEEe
Confidence            865    112   2468889999999999888876

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.11  E-value=3.2e-06  Score=86.61  Aligned_cols=91  Identities=10%  Similarity=0.151  Sum_probs=66.3

Q ss_pred             CCEEEEECCccccccc------c--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           82 GSLVLDAGCGNGKYLG------L--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~------~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      +..|||||||+|.+..      .  ...++|+++|-|+ |...|++.        .|+++.+|++++.++ +++|+||+-
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE  435 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE  435 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence            3589999999998731      1  2334899999997 45555543        489999999998875 679999994


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      ..=..+. .|....+|....|.|||||+++
T Consensus       436 wMG~fLl-~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          436 LLGSFAD-NELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCBTTBG-GGCHHHHHHHHGGGEEEEEEEE
T ss_pred             cCccccc-ccCCHHHHHHHHHhcCCCcEEc
Confidence            4322222 2234578888899999999875

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.08  E-value=3.9e-06  Score=84.88  Aligned_cols=98  Identities=11%  Similarity=0.060  Sum_probs=70.4

Q ss_pred             CEEEEECCcccccccc----C---------------CCcEEEEEeCCHHHHHHHHHc----CC--eE--EEeeCCCCC-C
Q 018606           83 SLVLDAGCGNGKYLGL----N---------------PDCFFVGCDISPSLIKICVDR----GH--EV--LVADAVNLP-Y  134 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~~----~---------------~~~~v~gvD~S~~~l~~a~~~----~i--~~--~~~D~~~l~-~  134 (353)
                      .+|||.+||+|.++..    .               ....++|+|+++.++.+|+.+    ++  .+  .++|....+ +
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            3999999999997531    0               146899999999999999875    32  33  677776654 4


Q ss_pred             CCCCccEEEechhhhh-------------------------cCCh-hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          135 RSDFGDAAISIAVLHH-------------------------LSTE-SRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       135 ~~~~fD~Vi~~~vl~h-------------------------~~~~-e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ....||+|+++--+..                         ++.. ..-..++..+.+.|+|||++.+.++.
T Consensus       326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~  397 (544)
T 3khk_A          326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN  397 (544)
T ss_dssp             TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred             ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence            5678999999532221                         1110 00136899999999999999998865

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.07  E-value=6.9e-07  Score=82.13  Aligned_cols=109  Identities=13%  Similarity=0.085  Sum_probs=71.1

Q ss_pred             HHHHHHh--CCCCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHH---c--CCeEEEeeCCCCCCCCCCc
Q 018606           71 KVATFLN--SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVD---R--GHEVLVADAVNLPYRSDFG  139 (353)
Q Consensus        71 ~~~~~l~--~l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~---~--~i~~~~~D~~~l~~~~~~f  139 (353)
                      ++.++..  .+.++.+|||||||+|.+...    .+-..|+|+|++..+...+..   .  ++..+..++.-..+....+
T Consensus        78 KL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~  157 (282)
T 3gcz_A           78 KLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG  157 (282)
T ss_dssp             HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence            4444444  467888999999999998652    333489999998764322221   0  2233333333234557889


Q ss_pred             cEEEechhhhhcCC----hhHHHHHHHHHHhccccC--cEEEEEEcC
Q 018606          140 DAAISIAVLHHLST----ESRRKKAIEELVRVVKKG--SLVLITVWA  180 (353)
Q Consensus       140 D~Vi~~~vl~h~~~----~e~~~~~l~el~rvLkpg--G~lli~~~~  180 (353)
                      |+|+|..+.. ...    ..+...+|.-+.++|+||  |.|++-+|.
T Consensus       158 DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          158 DTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             CEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            9999976654 222    112234577778999999  999999998

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.05  E-value=1.4e-05  Score=74.35  Aligned_cols=96  Identities=21%  Similarity=0.208  Sum_probs=74.5

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCC-CCCCCCccEE
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL-PYRSDFGDAA  142 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l-~~~~~~fD~V  142 (353)
                      +...+||=||.|.|..++    ..+..+|+.+|+.+.+++.|++.            +++++.+|+... .-..++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            445799999999999764    24456999999999999999874            478999998874 3446789999


Q ss_pred             Eechh-----hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          143 ISIAV-----LHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       143 i~~~v-----l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      |.-..     -.++-+    .++++.+.+.|+|||+++...-
T Consensus       162 i~D~~dp~~~~~~L~t----~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFT----SAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             EESCCCCCCTTCCSSC----CHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEeCCCcCCCchhhcC----HHHHHHHHHHhCCCCEEEEecC
Confidence            98432     122333    4689999999999999988653

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.95  E-value=5.1e-06  Score=69.10  Aligned_cols=101  Identities=17%  Similarity=0.180  Sum_probs=69.2

Q ss_pred             hHHHHHHHh-CCCCCCEEEEECCcccc-ccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCC-CCccEE
Q 018606           69 WPKVATFLN-SLPSGSLVLDAGCGNGK-YLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRS-DFGDAA  142 (353)
Q Consensus        69 ~~~~~~~l~-~l~~~~~VLDvGCG~G~-~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~-~~fD~V  142 (353)
                      |..+..++. ...++.+|||||||+|. .+.   ...++.|+++|+++..++        +++.|+.+..+.- ..||+|
T Consensus        22 ~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~--------~v~dDiF~P~~~~Y~~~DLI   93 (153)
T 2k4m_A           22 WNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG--------IVRDDITSPRMEIYRGAALI   93 (153)
T ss_dssp             HHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT--------EECCCSSSCCHHHHTTEEEE
T ss_pred             HHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc--------eEEccCCCCcccccCCcCEE
Confidence            444444443 34556799999999995 443   247889999999987654        8889988733211 479999


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccc
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED  185 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~  185 (353)
                      .++.     +++| +...|.++.+.  -|.-++|.....+...
T Consensus        94 Ysir-----PP~E-l~~~i~~lA~~--v~adliI~pL~~E~~~  128 (153)
T 2k4m_A           94 YSIR-----PPAE-IHSSLMRVADA--VGARLIIKPLTGEDIV  128 (153)
T ss_dssp             EEES-----CCTT-THHHHHHHHHH--HTCEEEEECBTTBCCC
T ss_pred             EEcC-----CCHH-HHHHHHHHHHH--cCCCEEEEcCCCCcCC
Confidence            8864     2333 55666666664  4678888888877643

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.92  E-value=3.3e-06  Score=82.29  Aligned_cols=67  Identities=13%  Similarity=0.072  Sum_probs=53.3

Q ss_pred             CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc------C---CeEEEeeCCCC-CC-CCCCccEEEec
Q 018606           79 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR------G---HEVLVADAVNL-PY-RSDFGDAAISI  145 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~------~---i~~~~~D~~~l-~~-~~~~fD~Vi~~  145 (353)
                      +.+|.+|||+|||+|..+.  ...+.+|+|+|+|+.|++.|+++      +   ++++++|+... +. +++.||+|++.
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            3458999999999999743  24567999999999999999876      2   68899999874 32 24589999983

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.91  E-value=4.8e-05  Score=66.98  Aligned_cols=91  Identities=10%  Similarity=0.100  Sum_probs=66.2

Q ss_pred             CCCCEEEEECCcccccc-ccCCCcEEEEEeCCHHHHHHHHHc----C------CeEEEeeCCCC---------------C
Q 018606           80 PSGSLVLDAGCGNGKYL-GLNPDCFFVGCDISPSLIKICVDR----G------HEVLVADAVNL---------------P  133 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~-~~~~~~~v~gvD~S~~~l~~a~~~----~------i~~~~~D~~~l---------------~  133 (353)
                      .+..+|||+|||..... ...++.+|+.+|.++.+.+.|++.    +      ++++.+|+...               +
T Consensus        29 ~~a~~VLEiGtGySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~  108 (202)
T 3cvo_A           29 EEAEVILEYGSGGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP  108 (202)
T ss_dssp             HHCSEEEEESCSHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred             hCCCEEEEECchHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence            34579999999743332 223478999999999999998864    3      57888886542               2


Q ss_pred             --------C-CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          134 --------Y-RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       134 --------~-~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                              . ..+.||+|+.-+-.        +...+..+.+.|+|||++++..
T Consensus       109 ~~~~~i~~~~~~~~fDlIfIDg~k--------~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          109 DYPLAVWRTEGFRHPDVVLVDGRF--------RVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             HHHHGGGGCTTCCCCSEEEECSSS--------HHHHHHHHHHHCSSCEEEEETT
T ss_pred             HHhhhhhccccCCCCCEEEEeCCC--------chhHHHHHHHhcCCCeEEEEeC
Confidence                    1 23789999997631        3466777889999999996654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.84  E-value=8.9e-06  Score=75.21  Aligned_cols=103  Identities=17%  Similarity=0.117  Sum_probs=65.8

Q ss_pred             hCCCCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHH-----cCCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           77 NSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVD-----RGHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~-----~~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      ..+.++.+||||||++|.++..    .+-..|+|+|++..+......     .++.....++.-..+....+|+|+|...
T Consensus        77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A  156 (300)
T 3eld_A           77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG  156 (300)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred             CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCc
Confidence            4567899999999999998653    223488999997643211110     0122222222223345678999999665


Q ss_pred             hhhcCC----hhHHHHHHHHHHhccccC-cEEEEEEcC
Q 018606          148 LHHLST----ESRRKKAIEELVRVVKKG-SLVLITVWA  180 (353)
Q Consensus       148 l~h~~~----~e~~~~~l~el~rvLkpg-G~lli~~~~  180 (353)
                      -+ ...    ..+...+|.-+.++|+|| |.|++-+|.
T Consensus       157 Pn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          157 ES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             CC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            44 221    112234577778999999 999999998

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.81  E-value=6.4e-06  Score=75.47  Aligned_cols=91  Identities=14%  Similarity=0.139  Sum_probs=60.2

Q ss_pred             CCCCC--CEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHH----------------cCCeEEEeeCCC-CCCCC
Q 018606           78 SLPSG--SLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD----------------RGHEVLVADAVN-LPYRS  136 (353)
Q Consensus        78 ~l~~~--~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~----------------~~i~~~~~D~~~-l~~~~  136 (353)
                      .+.++  .+|||+|||+|..+.  ...+++|+++|+++.+++.+++                .+++++++|+.. ++...
T Consensus        83 ~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~  162 (258)
T 2oyr_A           83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT  162 (258)
T ss_dssp             TCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred             cccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc
Confidence            35566  899999999999643  2236689999999976433322                247899999876 33223


Q ss_pred             CCccEEEechhhhhcCChhHHHHHHHHHHhccccCc
Q 018606          137 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGS  172 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG  172 (353)
                      ..||+|++.-.+.+-..    ..++++..++|++.+
T Consensus       163 ~~fDvV~lDP~y~~~~~----saavkk~~~~lr~l~  194 (258)
T 2oyr_A          163 PRPQVVYLDPMFPHKQK----SALVKKEMRVFQSLV  194 (258)
T ss_dssp             SCCSEEEECCCCCCCCC---------HHHHHHHHHS
T ss_pred             ccCCEEEEcCCCCCccc----chHHHHHHHHHHHhh
Confidence            46999999877655322    256677777887755

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.78  E-value=2.7e-05  Score=74.51  Aligned_cols=85  Identities=15%  Similarity=0.152  Sum_probs=62.2

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHH-cCCeEEEeeCCCCCCCCCCccEEEechhhhhcCChh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD-RGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES  155 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~-~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e  155 (353)
                      +.+|.++||+||++|.++..  ..++.|+|||+.+ |-..... -+++++++|+.....+.+.||+|+|..+..      
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~------  281 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK------  281 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC------
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC------
Confidence            67899999999999998753  5578999999864 3233333 378999999998877778899999976542      


Q ss_pred             HHHHHHHHHHhccccC
Q 018606          156 RRKKAIEELVRVVKKG  171 (353)
Q Consensus       156 ~~~~~l~el~rvLkpg  171 (353)
                       +...+.-+.+.|..|
T Consensus       282 -p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          282 -PAKVAALMAQWLVNG  296 (375)
T ss_dssp             -HHHHHHHHHHHHHTT
T ss_pred             -hHHhHHHHHHHHhcc
Confidence             334445555555444

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.76  E-value=4.6e-05  Score=73.00  Aligned_cols=115  Identities=17%  Similarity=0.124  Sum_probs=78.5

Q ss_pred             HHHHHhCCCCCCEEEEECCccccc----cccCCCcEEEEEeCCHHHHHHHHHc-------------CCeEEEeeCCCCC-
Q 018606           72 VATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR-------------GHEVLVADAVNLP-  133 (353)
Q Consensus        72 ~~~~l~~l~~~~~VLDvGCG~G~~----~~~~~~~~v~gvD~S~~~l~~a~~~-------------~i~~~~~D~~~l~-  133 (353)
                      +...+....||.+|||+++|+|.=    +....+..|+++|+++.-++..+++             ++.+...|...++ 
T Consensus       139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~  218 (359)
T 4fzv_A          139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE  218 (359)
T ss_dssp             HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred             HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence            334444678999999999999973    2334556899999999877766553             3456677777654 


Q ss_pred             CCCCCccEEEec----h----hhhhcC------Chh-------HHHHHHHHHHhccccCcEEEEEEcCCCccch
Q 018606          134 YRSDFGDAAISI----A----VLHHLS------TES-------RRKKAIEELVRVVKKGSLVLITVWAVEQEDK  186 (353)
Q Consensus       134 ~~~~~fD~Vi~~----~----vl~h~~------~~e-------~~~~~l~el~rvLkpgG~lli~~~~~~~~~~  186 (353)
                      ...+.||.|++-    +    ++..-+      ..+       ...++|....+.|||||+|+-++-+......
T Consensus       219 ~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~EN  292 (359)
T 4fzv_A          219 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQN  292 (359)
T ss_dssp             HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTT
T ss_pred             hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhC
Confidence            446789999972    2    111000      011       1346888999999999999988877655433

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.66  E-value=9.3e-06  Score=73.60  Aligned_cols=102  Identities=17%  Similarity=0.210  Sum_probs=61.1

Q ss_pred             CCCCCCEEEEECCcccccccc---CCCc-EEEEEeCCHH--HHHHHHH-cCCeEEE---e-eCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---NPDC-FFVGCDISPS--LIKICVD-RGHEVLV---A-DAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---~~~~-~v~gvD~S~~--~l~~a~~-~~i~~~~---~-D~~~l~~~~~~fD~Vi~~~  146 (353)
                      -+.|+.+|||+||++|.+...   ..+. .|.|.++...  +....-. .++.|++   + |+..++  ...+|+|+|-.
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSDM  147 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLCDI  147 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEECC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEEeCC
Confidence            578999999999999997643   2112 3334433322  1111000 1443443   6 988754  45799999954


Q ss_pred             hhh---hcCChhHHHHHHHHHHhccccCc-EEEEEEcCC
Q 018606          147 VLH---HLSTESRRKKAIEELVRVVKKGS-LVLITVWAV  181 (353)
Q Consensus       147 vl~---h~~~~e~~~~~l~el~rvLkpgG-~lli~~~~~  181 (353)
                      .=.   ...+..+-..+|.-+.++|+||| .|++-+|..
T Consensus       148 APnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          148 GESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence            221   11111112236777779999999 999999984

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.65  E-value=5.9e-05  Score=78.70  Aligned_cols=102  Identities=12%  Similarity=0.111  Sum_probs=68.7

Q ss_pred             CCCCEEEEECCcccccccc----C---CCcEEEEEeCCHHHHHHH--HHc--------C---CeEEEeeCCCC-CCCCCC
Q 018606           80 PSGSLVLDAGCGNGKYLGL----N---PDCFFVGCDISPSLIKIC--VDR--------G---HEVLVADAVNL-PYRSDF  138 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~----~---~~~~v~gvD~S~~~l~~a--~~~--------~---i~~~~~D~~~l-~~~~~~  138 (353)
                      .++.+|||.|||+|.++..    .   ....++|+|+++.+++.|  +..        +   ..+...|+... +.....
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k  399 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN  399 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence            4578999999999997532    2   235899999999999999  322        1   23444455543 234578


Q ss_pred             ccEEEechhhhh-cCCh-------------------------hHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          139 GDAAISIAVLHH-LSTE-------------------------SRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       139 fD~Vi~~~vl~h-~~~~-------------------------e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ||+|+++--... ....                         .....++..+.+.|+|||++.+.++..
T Consensus       400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            999999432210 0000                         012357888999999999999998653

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.57  E-value=1.5e-05  Score=73.02  Aligned_cols=95  Identities=13%  Similarity=0.168  Sum_probs=62.2

Q ss_pred             CCCCEEEEECCccccccc-----c------CCC-----cEEEEEeCCH---HHHH-----------HHHHc---------
Q 018606           80 PSGSLVLDAGCGNGKYLG-----L------NPD-----CFFVGCDISP---SLIK-----------ICVDR---------  120 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~-----~------~~~-----~~v~gvD~S~---~~l~-----------~a~~~---------  120 (353)
                      .++.+|||||+|+|..+.     .      .|.     ..++++|..+   .++.           .|++.         
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            345799999999999542     1      442     5999999766   4444           23321         


Q ss_pred             ------------CCeEEEeeCCC-CCCCC----CCccEEEechh-hhhcCChhH-HHHHHHHHHhccccCcEEEE
Q 018606          121 ------------GHEVLVADAVN-LPYRS----DFGDAAISIAV-LHHLSTESR-RKKAIEELVRVVKKGSLVLI  176 (353)
Q Consensus       121 ------------~i~~~~~D~~~-l~~~~----~~fD~Vi~~~v-l~h~~~~e~-~~~~l~el~rvLkpgG~lli  176 (353)
                                  +++++.+|+.. ++..+    ..||+|+.-.. -..  .++. -..++..+.++|+|||+|+.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~--~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK--NPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT--CGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc--ChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                        24577888766 44222    27999998541 111  1110 25789999999999999874

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.48  E-value=0.00054  Score=68.99  Aligned_cols=135  Identities=19%  Similarity=0.280  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhhcccccc-----ccccChHHHHHHHh---CCCCCCEEEEECCcccccccc--------C---------C
Q 018606           46 EKKYVHRVYDAIAPHFSS-----TRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL--------N---------P  100 (353)
Q Consensus        46 e~~~v~~~yd~~a~~y~~-----~~~~~~~~~~~~l~---~l~~~~~VLDvGCG~G~~~~~--------~---------~  100 (353)
                      +.+.+..+|+.+-..|..     ..+...+.+..++.   ...++.+|+|.+||+|.++..        .         .
T Consensus       174 ~~d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~  253 (530)
T 3ufb_A          174 EMHTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQ  253 (530)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHh
Confidence            445667778776665532     12333344444443   346678999999999998631        1         1


Q ss_pred             CcEEEEEeCCHHHHHHHHHc----C---CeEEEeeCCCCCCC----CCCccEEEechhhhh-------------cCChhH
Q 018606          101 DCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPYR----SDFGDAAISIAVLHH-------------LSTESR  156 (353)
Q Consensus       101 ~~~v~gvD~S~~~l~~a~~~----~---i~~~~~D~~~l~~~----~~~fD~Vi~~~vl~h-------------~~~~e~  156 (353)
                      ...++|+|+.+.+..+|+-+    +   ..+..+|....|..    ...||+|+++--+.-             .+....
T Consensus       254 ~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~  333 (530)
T 3ufb_A          254 ESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAET  333 (530)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBH
T ss_pred             hhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchh
Confidence            34799999999999999865    3   46777887765532    347999999543311             111111


Q ss_pred             HHHHHHHHHhccc-------cCcEEEEEEcC
Q 018606          157 RKKAIEELVRVVK-------KGSLVLITVWA  180 (353)
Q Consensus       157 ~~~~l~el~rvLk-------pgG~lli~~~~  180 (353)
                      -..++..+.+.||       |||++.+.++.
T Consensus       334 ~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~  364 (530)
T 3ufb_A          334 AMLFLQLIMRKLKRPGHGSDNGGRAAVVVPN  364 (530)
T ss_dssp             HHHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred             HHHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence            2456777888886       79999999864

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.47  E-value=0.00024  Score=65.54  Aligned_cols=108  Identities=16%  Similarity=0.141  Sum_probs=72.3

Q ss_pred             HHHHHHh--CCCCCCEEEEECCccccccc---cCCCc-EEEEEeCCHHH------HHHHHHcCCeEEEe-eCCCCCCCCC
Q 018606           71 KVATFLN--SLPSGSLVLDAGCGNGKYLG---LNPDC-FFVGCDISPSL------IKICVDRGHEVLVA-DAVNLPYRSD  137 (353)
Q Consensus        71 ~~~~~l~--~l~~~~~VLDvGCG~G~~~~---~~~~~-~v~gvD~S~~~------l~~a~~~~i~~~~~-D~~~l~~~~~  137 (353)
                      ++..+..  .+.++..||||||++|.+..   ...++ .|+|+|+...-      .+...-+.+.++.+ |+..++.  .
T Consensus        82 KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~  159 (321)
T 3lkz_A           82 KLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--E  159 (321)
T ss_dssp             HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--C
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--C
Confidence            3444443  46788899999999999865   34454 79999997651      11111113667776 8777664  5


Q ss_pred             CccEEEechhhhhcCChh----HHHHHHHHHHhccccC-cEEEEEEcCC
Q 018606          138 FGDAAISIAVLHHLSTES----RRKKAIEELVRVVKKG-SLVLITVWAV  181 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~~e----~~~~~l~el~rvLkpg-G~lli~~~~~  181 (353)
                      .+|+|+|.-. .--++++    +-..+|.-+.+.|++| |-|+|-+++.
T Consensus       160 ~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          160 CCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence            6899998654 4333322    2234677778899999 9999999886

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.34  E-value=0.00019  Score=68.94  Aligned_cols=99  Identities=19%  Similarity=0.121  Sum_probs=69.7

Q ss_pred             CCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc---------------CCeEEEeeCCCCC----CCCC
Q 018606           80 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR---------------GHEVLVADAVNLP----YRSD  137 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~---------------~i~~~~~D~~~l~----~~~~  137 (353)
                      .+..+||=||.|.|..++.   .+..+|+.+|+.+.+++.|++.               +++++.+|+...-    -..+
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            3457999999999997652   3446999999999999999974               2467777765421    1346


Q ss_pred             CccEEEechhh-------hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          138 FGDAAISIAVL-------HHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       138 ~fD~Vi~~~vl-------~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .||+||.-..-       .......--.++++.+.++|+|||+++...
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            89999985321       111111112578899999999999988753

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.19  E-value=0.00041  Score=63.94  Aligned_cols=74  Identities=16%  Similarity=0.199  Sum_probs=53.2

Q ss_pred             HHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCC-----CCCCCc
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLP-----YRSDFG  139 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~-----~~~~~f  139 (353)
                      ..+...+ .+.++..+||.+||.|.++..  ..+++|+|+|.++.+++.|++.   ++.++++++.+++     ...+.+
T Consensus        12 ~e~le~L-~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~~~v   90 (285)
T 1wg8_A           12 QEALDLL-AVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERV   90 (285)
T ss_dssp             HHHHHHH-TCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred             HHHHHhh-CCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCCCCc
Confidence            4455555 356788999999999997642  2278999999999999999872   4667777776653     112456


Q ss_pred             cEEEe
Q 018606          140 DAAIS  144 (353)
Q Consensus       140 D~Vi~  144 (353)
                      |.|++
T Consensus        91 DgIL~   95 (285)
T 1wg8_A           91 DGILA   95 (285)
T ss_dssp             EEEEE
T ss_pred             CEEEe
Confidence            77765

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.16  E-value=0.00033  Score=64.61  Aligned_cols=109  Identities=17%  Similarity=0.211  Sum_probs=73.4

Q ss_pred             hHHHHHHHh----CCCCCCEEEEECC------cccccc-c-cCCC-cEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC
Q 018606           69 WPKVATFLN----SLPSGSLVLDAGC------GNGKYL-G-LNPD-CFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR  135 (353)
Q Consensus        69 ~~~~~~~l~----~l~~~~~VLDvGC------G~G~~~-~-~~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~  135 (353)
                      +..+.+++.    .++.+.+|||+|+      -+|.+. + ..+. +.|+++|+.+-..     ..-.++++|+..+.. 
T Consensus        93 ytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----da~~~IqGD~~~~~~-  166 (344)
T 3r24_A           93 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----DADSTLIGDCATVHT-  166 (344)
T ss_dssp             HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----SSSEEEESCGGGEEE-
T ss_pred             HHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----CCCeEEEcccccccc-
Confidence            345666664    3578999999996      566642 2 2554 6999999976321     112558999876443 


Q ss_pred             CCCccEEEechh---hhh-----cCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          136 SDFGDAAISIAV---LHH-----LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       136 ~~~fD~Vi~~~v---l~h-----~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .+.||+|+|-..   -.+     .......+.++.-+.++|+|||.|++-+|..+.
T Consensus       167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg  222 (344)
T 3r24_A          167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW  222 (344)
T ss_dssp             SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred             CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence            478999999331   111     112222566777788899999999999998776

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.16  E-value=0.00035  Score=62.49  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=72.1

Q ss_pred             HHHHHHh--CCCCCCEEEEECCccccccc---cCCCc-EEEEEeCCHHHHHH---HHH---cCCeEEEe-eCCCCCCCCC
Q 018606           71 KVATFLN--SLPSGSLVLDAGCGNGKYLG---LNPDC-FFVGCDISPSLIKI---CVD---RGHEVLVA-DAVNLPYRSD  137 (353)
Q Consensus        71 ~~~~~l~--~l~~~~~VLDvGCG~G~~~~---~~~~~-~v~gvD~S~~~l~~---a~~---~~i~~~~~-D~~~l~~~~~  137 (353)
                      ++..+..  .+.++..||||||++|.+..   ...++ .|+|+|+...--+.   .+.   ..++|..+ |+..++-  .
T Consensus        66 KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~  143 (267)
T 3p8z_A           66 KLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--E  143 (267)
T ss_dssp             HHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--C
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--c
Confidence            4444443  46788999999999999865   24443 89999987542210   001   14688888 8876653  5


Q ss_pred             CccEEEechhhhhcCC----hhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          138 FGDAAISIAVLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       138 ~fD~Vi~~~vl~h~~~----~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .+|.|+|.-.= .-++    .++-.++|.-+.+.|++ |.+++-+++...
T Consensus       144 ~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~  191 (267)
T 3p8z_A          144 KCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM  191 (267)
T ss_dssp             CCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred             cccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence            69999995432 1122    11223477777899998 899999988765

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.82  E-value=0.0012  Score=60.93  Aligned_cols=95  Identities=14%  Similarity=-0.016  Sum_probs=67.0

Q ss_pred             CCCEEEEECCccccccc----c-----CCCcEEEEEeCCHH--------------------------HHHHHHHc-----
Q 018606           81 SGSLVLDAGCGNGKYLG----L-----NPDCFFVGCDISPS--------------------------LIKICVDR-----  120 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~-----~~~~~v~gvD~S~~--------------------------~l~~a~~~-----  120 (353)
                      ....|||+|+..|..+.    .     .++.+|+++|..+.                          .++.++++     
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            34599999999998432    1     14779999996421                          23444432     


Q ss_pred             ----CCeEEEeeCCC-CC-CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          121 ----GHEVLVADAVN-LP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       121 ----~i~~~~~D~~~-l~-~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                          +++++.+|+.+ +| ++.+.||+|+.-+-.+ - .   ....|..+...|+|||++++..+.
T Consensus       186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y-~-~---~~~~Le~~~p~L~pGGiIv~DD~~  246 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY-E-S---TWDTLTNLYPKVSVGGYVIVDDYM  246 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH-H-H---HHHHHHHHGGGEEEEEEEEESSCT
T ss_pred             CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc-c-c---HHHHHHHHHhhcCCCEEEEEcCCC
Confidence                47899998865 44 4457899999876421 1 1   357899999999999999998763

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.81  E-value=0.00051  Score=80.61  Aligned_cols=96  Identities=20%  Similarity=0.292  Sum_probs=49.3

Q ss_pred             CCCCEEEEECCcccccccc-----C--C--CcEEEEEeCCHHHHHHHHHc--CCeEEE--eeCCCC-CCCCCCccEEEec
Q 018606           80 PSGSLVLDAGCGNGKYLGL-----N--P--DCFFVGCDISPSLIKICVDR--GHEVLV--ADAVNL-PYRSDFGDAAISI  145 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~-----~--~--~~~v~gvD~S~~~l~~a~~~--~i~~~~--~D~~~l-~~~~~~fD~Vi~~  145 (353)
                      .+..+||+||.|+|..+..     .  +  ...++.+|+|+.+.+.|+++  .+++..  .|.... ++....||+||+.
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence            4567999999999986432     1  1  24889999998887766655  122222  233322 3345679999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .++|..++   ....|.+++++|||||.+++..
T Consensus      1319 ~vl~~t~~---~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1319 CALATLGD---PAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             CC-----------------------CCEEEEEE
T ss_pred             cccccccc---HHHHHHHHHHhcCCCcEEEEEe
Confidence            99987766   6789999999999999998865

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.70  E-value=0.0019  Score=59.98  Aligned_cols=41  Identities=24%  Similarity=0.324  Sum_probs=35.8

Q ss_pred             CCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606           80 PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      .++..|||++||+|..+.  ...+..++|+|+++.+++.|+++
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r  276 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKER  276 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence            678999999999999754  35567999999999999999887

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.69  E-value=0.026  Score=54.25  Aligned_cols=96  Identities=23%  Similarity=0.263  Sum_probs=66.8

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC---------CCCCccEE
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPY---------RSDFGDAA  142 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~---------~~~~fD~V  142 (353)
                      ..+.+|.+||-+|||. |.++.   ...++ +|+++|.++..++.+++.+.+++  |.....+         ....+|+|
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~~~~~~~g~g~Dvv  258 (398)
T 2dph_A          181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETI--DLRNSAPLRDQIDQILGKPEVDCG  258 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEE--ETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEE--cCCCcchHHHHHHHHhCCCCCCEE
Confidence            4678999999999976 65532   23466 99999999999999998887633  4332211         12268999


Q ss_pred             Eechhhh---------hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          143 ISIAVLH---------HLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       143 i~~~vl~---------h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +....-.         |+.    ....+..+.+.|++||++++.-
T Consensus       259 id~~g~~~~~~~~~~~~~~----~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          259 VDAVGFEAHGLGDEANTET----PNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             EECSCTTCBCSGGGTTSBC----TTHHHHHHHHHEEEEEEEECCS
T ss_pred             EECCCCccccccccccccc----cHHHHHHHHHHHhcCCEEEEec
Confidence            8765422         111    1246888999999999987654

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.24  E-value=0.058  Score=50.86  Aligned_cols=98  Identities=14%  Similarity=0.171  Sum_probs=69.7

Q ss_pred             CCCCEEEEECCccccccc-c---CCCcEEEEEeCCHHHHHHHHHc----------------------------CCeEEEe
Q 018606           80 PSGSLVLDAGCGNGKYLG-L---NPDCFFVGCDISPSLIKICVDR----------------------------GHEVLVA  127 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~-~---~~~~~v~gvD~S~~~l~~a~~~----------------------------~i~~~~~  127 (353)
                      .+...|+.+|||.....- .   .++..++-+|. +.+++.-++.                            +..++.+
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            455799999999987542 2   36789999998 6665543322                            3567888


Q ss_pred             eCCCCCC---------CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          128 DAVNLPY---------RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       128 D~~~l~~---------~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      |+.+...         ..+...++++-+++.+++..+ ...+|+.+.+.+ |+|.++++...
T Consensus       175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~-~~~ll~~ia~~~-~~~~~v~~e~i  234 (334)
T 1rjd_A          175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNE-SQLLINTIMSKF-SHGLWISYDPI  234 (334)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHH-HHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHH-HHHHHHHHHhhC-CCcEEEEEecc
Confidence            8876321         235668899999999998654 678888888876 78887666543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=95.09  E-value=0.0096  Score=56.12  Aligned_cols=63  Identities=13%  Similarity=0.174  Sum_probs=45.0

Q ss_pred             hHHHHHHHhCCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCC
Q 018606           69 WPKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNL  132 (353)
Q Consensus        69 ~~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l  132 (353)
                      ...+...+ .+.||..++|..||.|..+.    . .+.++|+|+|.++.+++.|++.   ++.++++++.++
T Consensus        46 l~Evl~~L-~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l  116 (347)
T 3tka_A           46 LDEAVNGL-NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSAL  116 (347)
T ss_dssp             THHHHHHT-CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGH
T ss_pred             HHHHHHhh-CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHH
Confidence            34555555 35788999999999998643    2 4678999999999999998421   345555555443

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.06  E-value=0.079  Score=50.69  Aligned_cols=96  Identities=19%  Similarity=0.199  Sum_probs=66.9

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC---------CCCCCccEE
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP---------YRSDFGDAA  142 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~---------~~~~~fD~V  142 (353)
                      ..+.+|.+||-+|||. |.++.   ...++ .|+++|.++.-++.+++.+.+++  |.....         .....+|+|
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~v~~~t~g~g~Dvv  258 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA--DLSLDTPLHEQIAALLGEPEVDCA  258 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE--ETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEE--ccCCcchHHHHHHHHhCCCCCCEE
Confidence            4678999999999875 55432   24566 79999999999999999888643  332211         112368999


Q ss_pred             Eechhh----------hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          143 ISIAVL----------HHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       143 i~~~vl----------~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +....-          ||. +   +...+....++|++||++++.-
T Consensus       259 id~~G~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          259 VDAVGFEARGHGHEGAKHE-A---PATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             EECCCTTCBCSSTTGGGSB-C---TTHHHHHHHHHEEEEEEEEECS
T ss_pred             EECCCCccccccccccccc-c---hHHHHHHHHHHHhcCCEEEEec
Confidence            876532          222 2   2357888999999999987654

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.80  E-value=0.041  Score=52.21  Aligned_cols=92  Identities=11%  Similarity=0.070  Sum_probs=64.3

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-------~~~~~fD~Vi~~  145 (353)
                      .+.+|.+||-+|||. |.++.   ...++ .|+++|.++..++.+++.+.+.+. |.....       ...+.+|+|+..
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~~~~gg~D~vid~  265 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVI-NSKTQDPVAAIKEITDGGVNFALES  265 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEe-cCCccCHHHHHHHhcCCCCcEEEEC
Confidence            577899999999986 55432   23456 799999999999999988765432 222111       112368999875


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..     .    ...+....+.|++||++++.-.
T Consensus       266 ~g-----~----~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          266 TG-----S----PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             SC-----C----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CC-----C----HHHHHHHHHHHhcCCEEEEeCC
Confidence            42     2    3467888999999999887643

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.45  E-value=0.068  Score=45.66  Aligned_cols=90  Identities=17%  Similarity=0.068  Sum_probs=61.8

Q ss_pred             CCCCCCEEEEECC--ccccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGC--G~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+.++.+||.+|+  |.|..+.   ...+++|+++|.++..++.+++.+.... .|.....        .....+|+++.
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi~  113 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYV-GDSRSVDFADEILELTDGYGVDVVLN  113 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE-eeCCcHHHHHHHHHHhCCCCCeEEEE
Confidence            5678999999995  3455432   2456799999999998888877665433 3443321        11236899987


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ...     .     ..+..+.+.|++||++++.-
T Consensus       114 ~~g-----~-----~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          114 SLA-----G-----EAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             CCC-----T-----HHHHHHHHTEEEEEEEEECS
T ss_pred             CCc-----h-----HHHHHHHHHhccCCEEEEEc
Confidence            542     1     35778889999999987754

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=94.43  E-value=0.026  Score=53.07  Aligned_cols=90  Identities=13%  Similarity=0.093  Sum_probs=64.7

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      .+.+|.+||-+|+|. |.++.   ...+++|+++|.++.-++.+++.+.+.+..+...  +. ..+|+|+....     .
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~--~~-~~~D~vid~~g-----~  244 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQ--CK-EELDFIISTIP-----T  244 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGG--CC-SCEEEEEECCC-----S
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHH--Hh-cCCCEEEECCC-----c
Confidence            678899999999875 54432   2457799999999999999999876654433222  22 27899987532     1


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                          ...+....+.|+++|++++.-.
T Consensus       245 ----~~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          245 ----HYDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             ----CCCHHHHHTTEEEEEEEEECCC
T ss_pred             ----HHHHHHHHHHHhcCCEEEEECC
Confidence                1246778899999999988744

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.31  E-value=0.18  Score=47.21  Aligned_cols=92  Identities=20%  Similarity=0.247  Sum_probs=63.8

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CCC--------C---CCCcc
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LPY--------R---SDFGD  140 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l~~--------~---~~~fD  140 (353)
                      ..+.+|.+||-+|+|. |.++.   ...++.|+++|.++.-++.+++.+.+.. .|... ..+        .   ...+|
T Consensus       164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~-~~~~~~~~~~~~i~~~~~~~~g~g~D  242 (352)
T 1e3j_A          164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVT-LVVDPAKEEESSIIERIRSAIGDLPN  242 (352)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEE-EECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEE-EcCcccccHHHHHHHHhccccCCCCC
Confidence            3678899999999875 44432   2456789999999999999998876532 23221 111        1   24689


Q ss_pred             EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +|+....     .    ...+....++|+++|++++.-
T Consensus       243 ~vid~~g-----~----~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          243 VTIDCSG-----N----EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             EEEECSC-----C----HHHHHHHHHHSCTTCEEEECS
T ss_pred             EEEECCC-----C----HHHHHHHHHHHhcCCEEEEEe
Confidence            9987542     2    245778889999999988764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.28  E-value=0.04  Score=49.79  Aligned_cols=42  Identities=24%  Similarity=0.297  Sum_probs=36.1

Q ss_pred             CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606           79 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      ..+|..|||..||+|..+.  ...+.+++|+|+++..++.|+++
T Consensus       210 ~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r  253 (260)
T 1g60_A          210 SNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFV  253 (260)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence            3688999999999999754  35577999999999999999876

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.20  E-value=0.13  Score=48.88  Aligned_cols=93  Identities=18%  Similarity=0.133  Sum_probs=65.6

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----------CCCCCccE
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP----------YRSDFGDA  141 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~----------~~~~~fD~  141 (353)
                      ..+.+|.+||=+|+|. |.++.   ...|+ .|+++|.++.-++.+++.+.+... |.....          ...+.+|+
T Consensus       178 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~i~~~~~~~~gg~Dv  256 (370)
T 4ej6_A          178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATV-DPSAGDVVEAIAGPVGLVPGGVDV  256 (370)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEE-CTTSSCHHHHHHSTTSSSTTCEEE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEE-CCCCcCHHHHHHhhhhccCCCCCE
Confidence            4678899999999875 44432   24566 999999999999999998765433 221111          22347999


Q ss_pred             EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      |+....     .    ...+..+.+.|++||++++.-.
T Consensus       257 vid~~G-----~----~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          257 VIECAG-----V----AETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             EEECSC-----C----HHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEECCC-----C----HHHHHHHHHHhccCCEEEEEec
Confidence            987532     2    3568888999999999887643

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.11  E-value=0.24  Score=46.58  Aligned_cols=93  Identities=14%  Similarity=0.165  Sum_probs=64.1

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCC-----C----C-CCCCCCccE
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV-----N----L-PYRSDFGDA  141 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~-----~----l-~~~~~~fD~  141 (353)
                      ..+.+|.+||-+|+|. |.++.   ...++ .|+++|.++.-++.+++.+.+.+. |..     +    + ......+|+
T Consensus       167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~~~~~~g~D~  245 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVL-QISKESPQEIARKVEGQLGCKPEV  245 (356)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEE-ECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE-cCcccccchHHHHHHHHhCCCCCE
Confidence            3678899999999875 55432   24566 999999999999999988765322 222     0    0 000146899


Q ss_pred             EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      |+....     .    ...+....++|++||++++.-.
T Consensus       246 vid~~g-----~----~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          246 TIECTG-----A----EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             EEECSC-----C----HHHHHHHHHHSCTTCEEEECSC
T ss_pred             EEECCC-----C----hHHHHHHHHHhcCCCEEEEEec
Confidence            987532     2    2457788899999999887643

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.78  E-value=0.077  Score=49.58  Aligned_cols=92  Identities=20%  Similarity=0.244  Sum_probs=64.5

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC------CCCCccEEEechh
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY------RSDFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~------~~~~fD~Vi~~~v  147 (353)
                      .+.+|.+||-+|+|. |.++.   ...+++|+++|.++.-++.+++.+.+.+. |.....+      ..+.+|+|+....
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~~~g~~d~vid~~g  241 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAV-NARDTDPAAWLQKEIGGAHGVLVTAV  241 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEE-eCCCcCHHHHHHHhCCCCCEEEEeCC
Confidence            578899999999975 55432   24577999999999999999998765433 2222111      0135788876532


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                           .    ...+..+.+.|+++|++++.-.
T Consensus       242 -----~----~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          242 -----S----PKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             -----C----HHHHHHHHHHEEEEEEEEECSC
T ss_pred             -----C----HHHHHHHHHHhccCCEEEEeCC
Confidence                 2    3568888999999999887643

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.60  E-value=0.087  Score=49.31  Aligned_cols=94  Identities=14%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             hCCCCCCEEEEECCcc-ccccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-----C-CCCCccEEEec
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-----Y-RSDFGDAAISI  145 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-----~-~~~~fD~Vi~~  145 (353)
                      ..+.+|.+||=+|+|. |.++.    ...+.+|+++|.++.-++.+++.+.+.+...-..+.     . ....+|+|+..
T Consensus       167 ~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~  246 (345)
T 3jv7_A          167 PLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDF  246 (345)
T ss_dssp             GGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEES
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEEC
Confidence            3578899999999975 54432    234679999999999999999987654432111110     0 12268988875


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .     ..    ...+....+.|+++|++++.-.
T Consensus       247 ~-----G~----~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          247 V-----GA----QSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             S-----CC----HHHHHHHHHHEEEEEEEEECSC
T ss_pred             C-----CC----HHHHHHHHHHHhcCCEEEEECC
Confidence            3     22    3478889999999999887743

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.39  E-value=0.13  Score=47.78  Aligned_cols=90  Identities=17%  Similarity=0.103  Sum_probs=62.7

Q ss_pred             CCCCCCEEEEECC--ccccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CC-------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGC--G~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l~-------~~~~~fD~Vi~  144 (353)
                      .+.++.+||-.||  |.|..+.   ...+++|+++|.++..++.+++.+.... .|..+ -.       ...+.+|+++.
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~d~vi~  220 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAA-FNYKTVNSLEEALKKASPDGYDCYFD  220 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEE-EecCCHHHHHHHHHHHhCCCCeEEEE
Confidence            5678999999998  3454432   2467799999999999988876665433 34433 11       11246899987


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ...-          ..+....+.|++||++++.-
T Consensus       221 ~~g~----------~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          221 NVGG----------EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             SSCH----------HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCh----------HHHHHHHHHHhcCCEEEEEe
Confidence            6541          24778889999999987764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.38  E-value=0.17  Score=47.26  Aligned_cols=92  Identities=17%  Similarity=0.216  Sum_probs=63.8

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCC------CCccEEEechh
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRS------DFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~------~~fD~Vi~~~v  147 (353)
                      .+.+|.+||-+|+|. |.++.   ...+++|+++|.++.-++.+++.+.+.. .|.....+..      +.+|+|+....
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~-~d~~~~~~~~~~~~~~~~~d~vid~~g  239 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLV-VNPLKEDAAKFMKEKVGGVHAAVVTAV  239 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEE-ECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEE-ecCCCccHHHHHHHHhCCCCEEEECCC
Confidence            678899999999964 44322   2456799999999999999988776543 2433211100      36899887542


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                           .    ...+..+.++|+++|++++.-.
T Consensus       240 -----~----~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          240 -----S----KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             -----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred             -----C----HHHHHHHHHHhhcCCEEEEecc
Confidence                 2    2467888899999999877643

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=93.11  E-value=0.1  Score=49.51  Aligned_cols=52  Identities=19%  Similarity=0.087  Sum_probs=43.0

Q ss_pred             CCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCCC
Q 018606           81 SGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNL  132 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~l  132 (353)
                      ++..|||||.|.|.++..    ....+|+++++...++...++.    +++++.+|+..+
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW  117 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence            468999999999998763    2245899999999999988774    689999999765

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=92.88  E-value=0.14  Score=48.04  Aligned_cols=94  Identities=14%  Similarity=0.094  Sum_probs=65.3

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi  143 (353)
                      ..+.+|.+||=+|+|. |.++.   ...++ .|+++|.++.-++.+++.+.+.+. |.....        .....+|+|+
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~v~~~t~g~g~D~v~  240 (352)
T 3fpc_A          162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDII-NYKNGDIVEQILKATDGKGVDKVV  240 (352)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEE-CGGGSCHHHHHHHHTTTCCEEEEE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEE-cCCCcCHHHHHHHHcCCCCCCEEE
Confidence            4678899999999875 44432   25666 899999999999999998765432 221111        1223689998


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ....     .    ...+..+.+.|+|||++++.-..
T Consensus       241 d~~g-----~----~~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          241 IAGG-----D----VHTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             ECSS-----C----TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             ECCC-----C----hHHHHHHHHHHhcCCEEEEeccc
Confidence            7532     2    24678888999999998877543

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=92.82  E-value=0.61  Score=43.28  Aligned_cols=97  Identities=12%  Similarity=0.123  Sum_probs=70.3

Q ss_pred             CEEEEECCcccccc-ccC-C-CcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCC---------CCCCCcc
Q 018606           83 SLVLDAGCGNGKYL-GLN-P-DCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLP---------YRSDFGD  140 (353)
Q Consensus        83 ~~VLDvGCG~G~~~-~~~-~-~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l~---------~~~~~fD  140 (353)
                      ..|++||||-=... +.. + +..++-+|. +..++..++.          +..++.+|+.+ .         +....-=
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt  181 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART  181 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence            57999999965432 222 3 479999994 7777665543          34678888875 2         2223445


Q ss_pred             EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ++++-++++++++. ....+|+.+...+.||+.+++.....+
T Consensus       182 ~~i~Egvl~Yl~~~-~~~~ll~~l~~~~~~gs~l~~d~~~~~  222 (310)
T 2uyo_A          182 AWLAEGLLMYLPAT-AQDGLFTEIGGLSAVGSRIAVETSPLH  222 (310)
T ss_dssp             EEEECSCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred             EEEEechHhhCCHH-HHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence            78888999999875 478899999999999999888876543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=92.63  E-value=0.17  Score=47.72  Aligned_cols=92  Identities=12%  Similarity=0.065  Sum_probs=64.3

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~~  145 (353)
                      .+.+|.+||=+|+|. |.++.   ...+++|+++|.++.-++.+++.+.+.+.. ...-.        .....+|+|+..
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~-~~~~~~~~~v~~~~~g~g~D~vid~  264 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGIN-RLEEDWVERVYALTGDRGADHILEI  264 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEc-CCcccHHHHHHHHhCCCCceEEEEC
Confidence            577899999999875 44432   256779999999999999999887754432 11111        112368999876


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ..     .     ..+....+.|++||++++.-..
T Consensus       265 ~g-----~-----~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          265 AG-----G-----AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             TT-----S-----SCHHHHHHHEEEEEEEEEECCC
T ss_pred             CC-----h-----HHHHHHHHHhhcCCEEEEEecC
Confidence            53     1     1366778899999999887543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.48  E-value=0.086  Score=50.06  Aligned_cols=91  Identities=13%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC----CCCCCCccEEEechhhh
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL----PYRSDFGDAAISIAVLH  149 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l----~~~~~~fD~Vi~~~vl~  149 (353)
                      .+.+|.+||-+|+|. |.++.   ...++.|+++|.++.-++.+++.+.+.+. |....    ... +.+|+|+....- 
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~-~g~Dvvid~~g~-  267 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVV-NSRNADEMAAHL-KSFDFILNTVAA-  267 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEE-ETTCHHHHHTTT-TCEEEEEECCSS-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEe-ccccHHHHHHhh-cCCCEEEECCCC-
Confidence            678899999999975 44432   24577899999999999999888765432 22110    111 468999875431 


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                              ...+....+.|+++|++++.-.
T Consensus       268 --------~~~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          268 --------PHNLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             --------CCCHHHHHTTEEEEEEEEECCC
T ss_pred             --------HHHHHHHHHHhccCCEEEEecc
Confidence                    1236677899999999876543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.40  E-value=0.16  Score=47.47  Aligned_cols=92  Identities=21%  Similarity=0.209  Sum_probs=63.7

Q ss_pred             CCCCCCEEEEECC--ccccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CCC-------CCCCccEEEe
Q 018606           78 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LPY-------RSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGC--G~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l~~-------~~~~fD~Vi~  144 (353)
                      .+.++.+||-+|+  |.|..+.   ...+++|+++|.++..++.+++.+.... .|..+ ..+       ..+.+|+|+.
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi~  244 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVF-IDFTKEKDIVGAVLKATDGGAHGVIN  244 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEE-EETTTCSCHHHHHHHHHTSCEEEEEE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceE-EecCccHhHHHHHHHHhCCCCCEEEE
Confidence            5678999999999  3455432   2456799999999988888888766533 25442 110       1126899887


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ...     .    ...+..+.+.|+++|++++.-.
T Consensus       245 ~~g-----~----~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          245 VSV-----S----EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             CSS-----C----HHHHHHHTTSEEEEEEEEECCC
T ss_pred             CCC-----c----HHHHHHHHHHHhcCCEEEEEeC
Confidence            643     1    2468888999999999876643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.38  E-value=0.43  Score=38.36  Aligned_cols=92  Identities=18%  Similarity=0.193  Sum_probs=63.3

Q ss_pred             CEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCCccEEEechhhhhcCCh
Q 018606           83 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE  154 (353)
Q Consensus        83 ~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~----~~~~~fD~Vi~~~vl~h~~~~  154 (353)
                      .+|+=+|||. |..+.   ...+..|+++|.++..++.+++.++.++.+|.....    ..-..+|+|++.     +++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~-----~~~~   82 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILT-----IPNG   82 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEEC-----CSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEE-----CCCh
Confidence            5789999986 55432   146789999999999999998889999999987632    122467888764     2333


Q ss_pred             hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          155 SRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       155 e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      + ....+....+.+.|+..++.....
T Consensus        83 ~-~n~~~~~~a~~~~~~~~iiar~~~  107 (140)
T 3fwz_A           83 Y-EAGEIVASARAKNPDIEIIARAHY  107 (140)
T ss_dssp             H-HHHHHHHHHHHHCSSSEEEEEESS
T ss_pred             H-HHHHHHHHHHHHCCCCeEEEEECC
Confidence            2 223344566777888876665543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=92.33  E-value=0.064  Score=49.55  Aligned_cols=87  Identities=16%  Similarity=0.113  Sum_probs=59.7

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      .+.+|.+||=+|+|. |.++.   ...+++|++++ ++.-++.+++.+.+.+..|...+   ...+|+|+....-     
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v---~~g~Dvv~d~~g~-----  209 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQV---TQKYFAIFDAVNS-----  209 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGC---CSCEEEEECC--------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHh---CCCccEEEECCCc-----
Confidence            567899999999964 54432   24567999999 99889999988776544342222   5678999875421     


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEE
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                           ..+....++|+++|++++..
T Consensus       210 -----~~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          210 -----QNAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             ---------TTGGGEEEEEEEEEEC
T ss_pred             -----hhHHHHHHHhcCCCEEEEEe
Confidence                 12356789999999988873

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.27  E-value=0.21  Score=46.73  Aligned_cols=93  Identities=16%  Similarity=0.206  Sum_probs=64.2

Q ss_pred             hCCCCCCEEEEECCcccc--ccc---cCC-CcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCC-CCccEE
Q 018606           77 NSLPSGSLVLDAGCGNGK--YLG---LNP-DCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRS-DFGDAA  142 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~--~~~---~~~-~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-------~~~-~~fD~V  142 (353)
                      ..+.++.+||-+|+|.|.  .+.   ... +++|+++|.++..++.+++.+.+... |.....       ... +.+|++
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~d~v  244 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVI-NASMQDPLAEIRRITESKGVDAV  244 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTSCEEEE
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEe-cCCCccHHHHHHHHhcCCCceEE
Confidence            467889999999998544  321   234 78999999999999998877654332 332211       112 478999


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      +....     .    ...+....++|+++|++++.-.
T Consensus       245 i~~~g-----~----~~~~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          245 IDLNN-----S----EKTLSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             EESCC-----C----HHHHTTGGGGEEEEEEEEECCS
T ss_pred             EECCC-----C----HHHHHHHHHHHhcCCEEEEECC
Confidence            87643     1    2467788899999999877543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=91.56  E-value=0.093  Score=49.12  Aligned_cols=91  Identities=14%  Similarity=0.187  Sum_probs=62.3

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCC--CcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC---C--CCC-CCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNP--DCFFVGCDISPSLIKICVDRGHEVLVADAVN---L--PYR-SDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~--~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~---l--~~~-~~~fD~Vi~~  145 (353)
                      .+ +|.+||-+|+|. |.++.   ...  +++|+++|.++.-++.+++.+.+.+. |...   .  .+. ...+|+|+..
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~~g~g~D~vid~  245 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVS-EMKDAESLINKLTDGLGASIAIDL  245 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEE-CHHHHHHHHHHHHTTCCEEEEEES
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEe-ccccchHHHHHhhcCCCccEEEEC
Confidence            67 899999999974 44332   123  78999999999999999888764432 1111   0  011 2368999876


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..     .    ...+..+.++|+++|++++.-.
T Consensus       246 ~g-----~----~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          246 VG-----T----EETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             SC-----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CC-----C----hHHHHHHHHHhhcCCEEEEeCC
Confidence            43     2    2467888899999999887643

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=91.45  E-value=0.27  Score=46.49  Aligned_cols=92  Identities=13%  Similarity=0.139  Sum_probs=63.3

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCC----C-----CCCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----L-----PYRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~----l-----~~~~~~fD~Vi  143 (353)
                      .+.+|.+||-+|+|. |.++.   ...++ .|+++|.++.-++.+++.+.+.+. |...    +     ....+.+|+|+
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~~~~~~~g~D~vi  266 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV-NPQDYKKPIQEVLTEMSNGGVDFSF  266 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE-CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEe-cccccchhHHHHHHHHhCCCCcEEE
Confidence            577899999999875 44432   24566 899999999999999888765432 2221    1     01123689998


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW  179 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~~  179 (353)
                      ....     .    ...+....+.|+++ |++++.-.
T Consensus       267 d~~g-----~----~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          267 EVIG-----R----LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             ECSC-----C----HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             ECCC-----C----HHHHHHHHHHhhcCCcEEEEecc
Confidence            7532     2    24678888999999 99877643

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=91.43  E-value=0.27  Score=46.45  Aligned_cols=92  Identities=15%  Similarity=0.206  Sum_probs=63.4

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCC--CC-------CCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN--LP-------YRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~--l~-------~~~~~fD~Vi  143 (353)
                      .+.+|.+||-+|+|. |.++.   ...++ .|+++|.++.-++.+++.+.+.+. |...  ..       ...+.+|+|+
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~~~~~~~g~D~vi  267 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFV-NPNDHSEPISQVLSKMTNGGVDFSL  267 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEE-CGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEE-eccccchhHHHHHHHHhCCCCCEEE
Confidence            577899999999875 44432   24566 899999999999999988765432 2221  01       1123689998


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW  179 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~~  179 (353)
                      ....     .    ...+....++|+++ |++++.-.
T Consensus       268 d~~g-----~----~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          268 ECVG-----N----VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             ECSC-----C----HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ECCC-----C----HHHHHHHHHHhhcCCcEEEEEcC
Confidence            7532     2    24678889999999 99877643

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=91.26  E-value=0.33  Score=45.19  Aligned_cols=90  Identities=13%  Similarity=0.107  Sum_probs=62.0

Q ss_pred             CCCCCCEEEEECC--ccccccc---cCCCcEEEEEeCCHHHHHHHH-HcCCeEEEeeCCCC-CC-------CCCCccEEE
Q 018606           78 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICV-DRGHEVLVADAVNL-PY-------RSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGC--G~G~~~~---~~~~~~v~gvD~S~~~l~~a~-~~~i~~~~~D~~~l-~~-------~~~~fD~Vi  143 (353)
                      .+.+|.+||-+|+  |.|..+.   ...+++|+++|.++..++.++ +.+.... .|.... .+       ..+.+|+|+
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~d~vi  230 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDA-FNYKEESDLTAALKRCFPNGIDIYF  230 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEE-EETTSCSCSHHHHHHHCTTCEEEEE
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceE-EecCCHHHHHHHHHHHhCCCCcEEE
Confidence            5678999999998  3455432   245779999999999999888 4565433 243321 11       124689998


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ....          ...+....+.|++||++++.-
T Consensus       231 ~~~g----------~~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          231 ENVG----------GKMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             ESSC----------HHHHHHHHTTEEEEEEEEECC
T ss_pred             ECCC----------HHHHHHHHHHHhcCCEEEEEc
Confidence            7643          135778889999999988763

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=91.07  E-value=0.73  Score=42.79  Aligned_cols=93  Identities=17%  Similarity=0.147  Sum_probs=63.2

Q ss_pred             hCCCCCCEEEEECCcccccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~-----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi  143 (353)
                      ..+.+|.+||=+|+|.+..+     ....+.+|+++|.+++-++.+++.+.+... |..+..        .....+|.++
T Consensus       159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i-~~~~~~~~~~v~~~t~g~g~d~~~  237 (348)
T 4eez_A          159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTI-NSGDVNPVDEIKKITGGLGVQSAI  237 (348)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEE-EC-CCCHHHHHHHHTTSSCEEEEE
T ss_pred             cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEE-eCCCCCHHHHhhhhcCCCCceEEE
Confidence            35788999999999876532     235678999999999999999988765432 222111        1122456665


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ....     .    ...+....+.|+++|++++.-.
T Consensus       238 ~~~~-----~----~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          238 VCAV-----A----RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             ECCS-----C----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             Eecc-----C----cchhheeheeecCCceEEEEec
Confidence            5322     2    3568888999999999887653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=91.04  E-value=0.26  Score=46.57  Aligned_cols=92  Identities=12%  Similarity=0.104  Sum_probs=63.5

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCC----C-----CCCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----L-----PYRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~----l-----~~~~~~fD~Vi  143 (353)
                      .+.+|.+||-+|+|. |.++.   ...++ .|+++|.++.-++.+++.+.+.+. |...    +     ....+.+|+|+
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~i~~~t~gg~Dvvi  266 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECL-NPKDYDKPIYEVICEKTNGGVDYAV  266 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEE-CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEE-ecccccchHHHHHHHHhCCCCCEEE
Confidence            577899999999875 44432   23466 899999999999999988765432 2221    1     01123689998


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW  179 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~~  179 (353)
                      ....     .    ...+....+.|+++ |++++.-.
T Consensus       267 d~~g-----~----~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          267 ECAG-----R----IETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             ECSC-----C----HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             ECCC-----C----HHHHHHHHHHHhcCCCEEEEEcc
Confidence            7532     2    34678889999999 99877643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=90.86  E-value=0.35  Score=45.45  Aligned_cols=90  Identities=14%  Similarity=0.108  Sum_probs=62.6

Q ss_pred             CCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+.++.+||-.|++  .|..+.   ...+++|+++|.++..++.+++.+.... .|.....        .....+|+|+.
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~-~d~~~~~~~~~~~~~~~~~~~D~vi~  245 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEV-FNHREVNYIDKIKKYVGEKGIDIIIE  245 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEE-EeCCCchHHHHHHHHcCCCCcEEEEE
Confidence            56789999999983  354432   2457899999999999998888776533 2433221        11236899988


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ...-          ..+....++|+++|++++.-
T Consensus       246 ~~G~----------~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          246 MLAN----------VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             SCHH----------HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCh----------HHHHHHHHhccCCCEEEEEe
Confidence            6541          24667789999999988764

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=90.79  E-value=0.27  Score=45.62  Aligned_cols=94  Identities=17%  Similarity=0.203  Sum_probs=56.6

Q ss_pred             CEEEEECCccccccc--------cCCCc--EEEEEeCC------------HHHHHHHHHc---------CCeEEEeeCCC
Q 018606           83 SLVLDAGCGNGKYLG--------LNPDC--FFVGCDIS------------PSLIKICVDR---------GHEVLVADAVN  131 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~--------~~~~~--~v~gvD~S------------~~~l~~a~~~---------~i~~~~~D~~~  131 (353)
                      -+|||+|-|+|..+.        ..+..  .++.+|..            ..+.+.....         .+++..+|+..
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            489999999998531        24443  56777641            1222222221         23567788755


Q ss_pred             -CC-CCCCCccEEEechhhhhcCChhH-HHHHHHHHHhccccCcEEEEE
Q 018606          132 -LP-YRSDFGDAAISIAVLHHLSTESR-RKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       132 -l~-~~~~~fD~Vi~~~vl~h~~~~e~-~~~~l~el~rvLkpgG~lli~  177 (353)
                       ++ +.+..||+++.-+. .--.+++. -..+++.|+++++|||++.-+
T Consensus       178 ~l~~l~~~~~Da~flDgF-sP~kNPeLWs~e~f~~l~~~~~pgg~laTY  225 (308)
T 3vyw_A          178 RIKEVENFKADAVFHDAF-SPYKNPELWTLDFLSLIKERIDEKGYWVSY  225 (308)
T ss_dssp             HGGGCCSCCEEEEEECCS-CTTTSGGGGSHHHHHHHHTTEEEEEEEEES
T ss_pred             HHhhhcccceeEEEeCCC-CcccCcccCCHHHHHHHHHHhCCCcEEEEE
Confidence             33 44557999988651 11112221 147999999999999987643

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.68  E-value=0.65  Score=38.89  Aligned_cols=91  Identities=13%  Similarity=0.092  Sum_probs=60.7

Q ss_pred             CCEEEEECCcc-ccccc---cCC-CcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----C-CCCCccEEEechhhhhc
Q 018606           82 GSLVLDAGCGN-GKYLG---LNP-DCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----Y-RSDFGDAAISIAVLHHL  151 (353)
Q Consensus        82 ~~~VLDvGCG~-G~~~~---~~~-~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~----~-~~~~fD~Vi~~~vl~h~  151 (353)
                      +.+|+=+|||. |..+.   ... +..|+++|.++..++.+++.++.++.+|..+..    . .-..+|+|+...     
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~-----  113 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM-----  113 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC-----
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC-----
Confidence            56899999986 54432   134 789999999999998888888888888876521    1 234578888742     


Q ss_pred             CChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          152 STESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       152 ~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ++.+ ....+-.+.+.+.|++.++...
T Consensus       114 ~~~~-~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          114 PHHQ-GNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             SSHH-HHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CChH-HHHHHHHHHHHHCCCCEEEEEE
Confidence            2322 2233444566667777777654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=90.66  E-value=0.38  Score=44.85  Aligned_cols=90  Identities=11%  Similarity=0.025  Sum_probs=62.2

Q ss_pred             CCCCCCEEEEECC--ccccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGC--G~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+.++.+||-+|+  |.|..+.   ...+++|+++|.++..++.+++.+.+.. .|.....        .....+|+|+.
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~-~d~~~~~~~~~~~~~~~~~~~d~vi~  241 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADET-VNYTHPDWPKEVRRLTGGKGADKVVD  241 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEE-EETTSTTHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEE-EcCCcccHHHHHHHHhCCCCceEEEE
Confidence            5678999999998  3455432   2457799999999999999887766543 3443321        11246899988


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ... .         ..+..+.+.|+++|++++..
T Consensus       242 ~~g-~---------~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          242 HTG-A---------LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             SSC-S---------SSHHHHHHHEEEEEEEEESS
T ss_pred             CCC-H---------HHHHHHHHhhccCCEEEEEe
Confidence            654 1         13667788999999987654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=90.58  E-value=0.41  Score=44.35  Aligned_cols=92  Identities=13%  Similarity=0.081  Sum_probs=63.4

Q ss_pred             hCCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHH-HHcCCeEEEeeCCCCC-------CCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKIC-VDRGHEVLVADAVNLP-------YRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a-~~~~i~~~~~D~~~l~-------~~~~~fD~Vi  143 (353)
                      ..+.+|.+||-+|++  .|..+.   ...+++|+++|.++.-++.+ ++.+.+... |.....       ...+.+|+|+
T Consensus       145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~d~vi  223 (336)
T 4b7c_A          145 GQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAI-DYKNEDLAAGLKRECPKGIDVFF  223 (336)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEE-ETTTSCHHHHHHHHCTTCEEEEE
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEE-ECCCHHHHHHHHHhcCCCceEEE
Confidence            357889999999983  354432   25677999999999999988 666664332 332211       1124689998


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ....-          ..+..+.+.|+++|++++.-.
T Consensus       224 ~~~g~----------~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          224 DNVGG----------EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             ESSCH----------HHHHHHHTTEEEEEEEEECCC
T ss_pred             ECCCc----------chHHHHHHHHhhCCEEEEEee
Confidence            75431          357788899999999887643

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=90.57  E-value=0.44  Score=44.48  Aligned_cols=88  Identities=11%  Similarity=0.131  Sum_probs=59.6

Q ss_pred             CCCEEEEEC-Ccc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----CCCCCCccEEEechhhhh
Q 018606           81 SGSLVLDAG-CGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        81 ~~~~VLDvG-CG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----~~~~~~fD~Vi~~~vl~h  150 (353)
                      +|.+||=+| +|. |.++.   ...+++|+++|.++.-++.+++.+.+.+...-..+     ......+|+|+....   
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g---  226 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFN---  226 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSC---
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCC---
Confidence            789999994 553 44432   25677999999999999999988765433211110     012346899987532   


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                            -...+..+.++|+++|+++..
T Consensus       227 ------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          227 ------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             ------HHHHHHHHHHHEEEEEEEEES
T ss_pred             ------chHHHHHHHHHhccCCEEEEE
Confidence                  235678888999999998654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=90.57  E-value=0.32  Score=46.02  Aligned_cols=92  Identities=15%  Similarity=0.078  Sum_probs=63.4

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCC--CC-------CCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN--LP-------YRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~--l~-------~~~~~fD~Vi  143 (353)
                      .+.+|.+||-+|+|. |.++.   ...++ .|+++|.++.-++.+++.+.+.+. |...  -.       ...+.+|+|+
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~v~~~~~~g~Dvvi  270 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCL-NPRELDKPVQDVITELTAGGVDYSL  270 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE-CGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEE-ccccccchHHHHHHHHhCCCccEEE
Confidence            577899999999874 44432   24566 899999999999999888765432 2221  00       1123689998


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW  179 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~~  179 (353)
                      ....     .    ...+....+.|++| |++++.-.
T Consensus       271 d~~G-----~----~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          271 DCAG-----T----AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             ESSC-----C----HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             ECCC-----C----HHHHHHHHHHhhcCCCEEEEECC
Confidence            7532     2    34678889999999 99887644

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=90.46  E-value=0.3  Score=45.48  Aligned_cols=91  Identities=15%  Similarity=0.136  Sum_probs=61.9

Q ss_pred             CCCCCCEEEEECCccc--cccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNG--KYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G--~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+.+|.+||-+|+|.|  ..+.   ...+++|+++|.++.-++.+++.+.+... |.....        .....+|+|+.
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~-~~~~~~~~~~~~~~~~~~g~Dvvid  219 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVI-DTSTAPLYETVMELTNGIGADAAID  219 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEE-eCCcccHHHHHHHHhCCCCCcEEEE
Confidence            5788999999999854  4332   24577999999999989999888765432 332211        11246899987


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ...-.          .+.+..+.|++||++++.-.
T Consensus       220 ~~g~~----------~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          220 SIGGP----------DGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             SSCHH----------HHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCh----------hHHHHHHHhcCCCEEEEEee
Confidence            64321          22334589999999887754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=90.36  E-value=0.31  Score=45.98  Aligned_cols=92  Identities=16%  Similarity=0.183  Sum_probs=63.1

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCC--CC-------CCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN--LP-------YRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~--l~-------~~~~~fD~Vi  143 (353)
                      .+.+|.+||-+|+|. |.++.   ...++ .|+++|.++.-++.+++.+.+.+. |...  ..       ...+.+|+|+
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~v~~~~~~g~D~vi  265 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI-NPQDFSKPIQEVLIEMTDGGVDYSF  265 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEE-CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEe-ccccccccHHHHHHHHhCCCCCEEE
Confidence            567899999999875 44432   23466 899999999999999988765432 2221  00       1123689998


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW  179 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~~  179 (353)
                      ....     .    ...+..+.+.|+++ |++++.-.
T Consensus       266 d~~g-----~----~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          266 ECIG-----N----VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             ECSC-----C----HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ECCC-----c----HHHHHHHHHhhccCCcEEEEEec
Confidence            7532     2    24678889999999 99887643

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=90.16  E-value=0.69  Score=43.34  Aligned_cols=94  Identities=19%  Similarity=0.167  Sum_probs=62.8

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCcE-EEEEeCCHHHHHHHHHcCCeEEEeeCCC-----C------CCCCCCcc
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVN-----L------PYRSDFGD  140 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~-v~gvD~S~~~l~~a~~~~i~~~~~D~~~-----l------~~~~~~fD  140 (353)
                      ..+.+|.+||=+|+|. |.++.   ...|+. |+++|.++.-++.+++....++...+..     +      ......+|
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~D  254 (363)
T 3m6i_A          175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPA  254 (363)
T ss_dssp             HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCC
Confidence            4678899999999865 44432   245665 9999999999999988732222211110     0      01234689


Q ss_pred             EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      +|+....     .    ...+..+.++|++||++++.-.
T Consensus       255 vvid~~g-----~----~~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          255 VALECTG-----V----ESSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             EEEECSC-----C----HHHHHHHHHHSCTTCEEEECCC
T ss_pred             EEEECCC-----C----hHHHHHHHHHhcCCCEEEEEcc
Confidence            9987532     2    3467888899999999987754

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=90.15  E-value=0.88  Score=43.44  Aligned_cols=97  Identities=13%  Similarity=0.037  Sum_probs=60.9

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+.+|.+||=+|+|. |.++.   ...++ .|+++|.++.-++.+++.+.+.+. |.....        .....+|+|+.
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~i~~~t~g~g~D~vid  288 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVI-DPTKENFVEAVLDYTNGLGAKLFLE  288 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEE-CTTTSCHHHHHHHHTTTCCCSEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEE-cCCCCCHHHHHHHHhCCCCCCEEEE
Confidence            577899999999864 44322   24566 999999999999999998765443 222111        11236899987


Q ss_pred             chhhhhcCCh-hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTE-SRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~-e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ...     .. .....++.-+.+.+++||++++.-..
T Consensus       289 ~~g-----~~~~~~~~~~~~l~~~~~~~G~iv~~G~~  320 (404)
T 3ip1_A          289 ATG-----VPQLVWPQIEEVIWRARGINATVAIVARA  320 (404)
T ss_dssp             CSS-----CHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred             CCC-----CcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence            532     21 00122333333555999998887543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=90.07  E-value=0.37  Score=45.62  Aligned_cols=92  Identities=17%  Similarity=0.183  Sum_probs=64.1

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCC--CCC-------CCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV--NLP-------YRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~--~l~-------~~~~~fD~Vi  143 (353)
                      .+.+|.+||=+|+|. |.++.   ...++ .|+++|.++.-++.+++.+.+... |..  ...       ...+.+|+|+
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~i~~~~~gg~D~vi  268 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFV-NPKDHDKPIQEVIVDLTDGGVDYSF  268 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEE-CGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEE-ccccCchhHHHHHHHhcCCCCCEEE
Confidence            567899999999974 44432   24466 899999999999999988765432 222  111       1123789998


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW  179 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~~  179 (353)
                      ....     .    ...+....+.|++| |++++.-.
T Consensus       269 d~~g-----~----~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          269 ECIG-----N----VSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             ECSC-----C----HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ECCC-----C----HHHHHHHHHHhhccCCEEEEEcc
Confidence            7532     2    35688899999997 99887654

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=89.78  E-value=0.49  Score=44.41  Aligned_cols=91  Identities=12%  Similarity=0.007  Sum_probs=63.5

Q ss_pred             CCCCC------CEEEEECCcc-cccc-c----cCCCcE-EEEEeCCHH---HHHHHHHcCCeEEEeeCCCCCCC-----C
Q 018606           78 SLPSG------SLVLDAGCGN-GKYL-G----LNPDCF-FVGCDISPS---LIKICVDRGHEVLVADAVNLPYR-----S  136 (353)
Q Consensus        78 ~l~~~------~~VLDvGCG~-G~~~-~----~~~~~~-v~gvD~S~~---~l~~a~~~~i~~~~~D~~~l~~~-----~  136 (353)
                      .+.+|      .+||=+|+|. |.++ .    ...++. |+++|.++.   -++.+++.+.+.+  |...-.+.     .
T Consensus       163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v--~~~~~~~~~i~~~~  240 (357)
T 2b5w_A          163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV--DSRQTPVEDVPDVY  240 (357)
T ss_dssp             HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE--ETTTSCGGGHHHHS
T ss_pred             CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc--CCCccCHHHHHHhC
Confidence            34677      8999999864 4444 1    345665 999999988   8899988887765  54432211     1


Q ss_pred             CCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          137 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      +.+|+|+....     .    ...+..+.++|+++|++++.-.
T Consensus       241 gg~Dvvid~~g-----~----~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          241 EQMDFIYEATG-----F----PKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             CCEEEEEECSC-----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEECCC-----C----hHHHHHHHHHHhcCCEEEEEeC
Confidence            36899886532     2    2467888999999999887644

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=89.68  E-value=0.75  Score=43.32  Aligned_cols=88  Identities=13%  Similarity=0.134  Sum_probs=61.2

Q ss_pred             CCCEEEEEC-Ccc-ccccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----CCCCCCccEEEechhhh
Q 018606           81 SGSLVLDAG-CGN-GKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAVLH  149 (353)
Q Consensus        81 ~~~~VLDvG-CG~-G~~~~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-----~~~~~~fD~Vi~~~vl~  149 (353)
                      +|.+||=+| +|. |.++.    ...+.+|+++|.++.-++.+++.+.+.+...-..+     ....+.+|+|+....  
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g--  248 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTH--  248 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCC--
Confidence            788999998 554 55432    23578999999999999999988765443211110     122357899887532  


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                             -...+..+.++|+++|++++.
T Consensus       249 -------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          249 -------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             -------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             -------chhhHHHHHHHhcCCCEEEEE
Confidence                   235678889999999999876

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=89.67  E-value=0.47  Score=44.31  Aligned_cols=91  Identities=16%  Similarity=0.129  Sum_probs=62.3

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+ +|.+||-+|+|. |.++.   ...++ +|+++|.++.-++.+++.+.+.+. |.....        .....+|+|+.
T Consensus       165 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~-~~~~~~~~~~v~~~~~g~g~D~vid  242 (348)
T 2d8a_A          165 PI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVI-NPFEEDVVKEVMDITDGNGVDVFLE  242 (348)
T ss_dssp             CC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEE-CTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE-CCCCcCHHHHHHHHcCCCCCCEEEE
Confidence            46 889999999964 44432   24567 899999999999999887765432 322211        11235899987


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ...     .    ...+..+.+.|+++|++++.-.
T Consensus       243 ~~g-----~----~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          243 FSG-----A----PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             CSC-----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCC-----C----HHHHHHHHHHHhcCCEEEEEcc
Confidence            543     2    2467888899999999877643

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=89.52  E-value=0.22  Score=46.81  Aligned_cols=94  Identities=15%  Similarity=0.057  Sum_probs=61.9

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-C----CCCCCccEEEechh
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-P----YRSDFGDAAISIAV  147 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-~----~~~~~fD~Vi~~~v  147 (353)
                      ..+.+|.+||-+|+|. |.++.   ...+++|+++|.++.-++.+++.+.+.+. |.... .    +. +.+|+|+....
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~~~~~~~~~-~~~D~vid~~g  252 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYI-ATLEEGDWGEKYF-DTFDLIVVCAS  252 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEE-EGGGTSCHHHHSC-SCEEEEEECCS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEE-cCcCchHHHHHhh-cCCCEEEECCC
Confidence            3678899999999964 44432   24567899999999989999888765432 22211 1    11 46899987643


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      -.  .     ...+..+.++|++||++++.-.
T Consensus       253 ~~--~-----~~~~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          253 SL--T-----DIDFNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             CS--T-----TCCTTTGGGGEEEEEEEEECCC
T ss_pred             CC--c-----HHHHHHHHHHhcCCCEEEEecC
Confidence            20  0     0134557789999999876643

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=89.35  E-value=0.28  Score=46.28  Aligned_cols=85  Identities=9%  Similarity=0.006  Sum_probs=59.5

Q ss_pred             CCEEEEECCcc-ccccc---cCCCcEEEEEeCCH---HHHHHHHHcCCeEEEeeCCCCCCCC------CCccEEEechhh
Q 018606           82 GSLVLDAGCGN-GKYLG---LNPDCFFVGCDISP---SLIKICVDRGHEVLVADAVNLPYRS------DFGDAAISIAVL  148 (353)
Q Consensus        82 ~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~---~~l~~a~~~~i~~~~~D~~~l~~~~------~~fD~Vi~~~vl  148 (353)
                      |.+||-+|+|. |.++.   ...+++|+++|.++   .-++.+++.+.+.+  | .. .+.+      +.+|+|+.....
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v--~-~~-~~~~~~~~~~~~~d~vid~~g~  256 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY--N-SS-NGYDKLKDSVGKFDVIIDATGA  256 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE--E-CT-TCSHHHHHHHCCEEEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee--c-hH-HHHHHHHHhCCCCCEEEECCCC
Confidence            89999999853 33322   24567999999998   77888888787765  5 43 3211      458999876431


Q ss_pred             hhcCChhHHHHHH-HHHHhccccCcEEEEEEc
Q 018606          149 HHLSTESRRKKAI-EELVRVVKKGSLVLITVW  179 (353)
Q Consensus       149 ~h~~~~e~~~~~l-~el~rvLkpgG~lli~~~  179 (353)
                               ...+ +.+.+.|+++|++++...
T Consensus       257 ---------~~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          257 ---------DVNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             ---------CTHHHHHHGGGEEEEEEEEECSC
T ss_pred             ---------hHHHHHHHHHHHhcCCEEEEEec
Confidence                     1245 788899999999877643

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=88.37  E-value=0.31  Score=46.27  Aligned_cols=91  Identities=14%  Similarity=0.145  Sum_probs=62.3

Q ss_pred             CCCCCEEEEECCcc-ccccc---cCCC-cEEEEEeCCHHHHHHHHHcCCeEEEeeCC---C------C-C-CCCCCccEE
Q 018606           79 LPSGSLVLDAGCGN-GKYLG---LNPD-CFFVGCDISPSLIKICVDRGHEVLVADAV---N------L-P-YRSDFGDAA  142 (353)
Q Consensus        79 l~~~~~VLDvGCG~-G~~~~---~~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~D~~---~------l-~-~~~~~fD~V  142 (353)
                      +.+|.+||-+|+|. |.++.   ...+ .+|+++|.++.-++.+++.+.+.+. |..   .      + . .....+|+|
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~v~~~~~g~g~Dvv  271 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTL-NRRETSVEERRKAIMDITHGRGADFI  271 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEE-eccccCcchHHHHHHHHhCCCCCcEE
Confidence            77899999999764 44432   2456 5999999999999999988765432 222   1      0 0 112368999


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      +....     .    ...+....+.|+++|++++.-.
T Consensus       272 id~~g-----~----~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          272 LEATG-----D----SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             EECSS-----C----TTHHHHHHHHEEEEEEEEECCC
T ss_pred             EECCC-----C----HHHHHHHHHHHhcCCEEEEEec
Confidence            87542     1    1357778899999999877643

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.33  E-value=1  Score=43.46  Aligned_cols=94  Identities=21%  Similarity=0.253  Sum_probs=67.7

Q ss_pred             CCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCCccEEEechhhhhcCC
Q 018606           82 GSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        82 ~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~----~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      ..+|+=+|+|. |..+.   ...+..|+++|.++..++.+++.++.++.+|+.+..    ..-...|+|++..     .+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~-----~~   78 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI-----DD   78 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECC-----SS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECC-----CC
Confidence            45788899986 44332   146789999999999999999889999999998742    2234578777642     33


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .+ ....+..+.|.+.|+..++.-....
T Consensus        79 ~~-~n~~i~~~ar~~~p~~~Iiara~~~  105 (413)
T 3l9w_A           79 PQ-TNLQLTEMVKEHFPHLQIIARARDV  105 (413)
T ss_dssp             HH-HHHHHHHHHHHHCTTCEEEEEESSH
T ss_pred             hH-HHHHHHHHHHHhCCCCeEEEEECCH
Confidence            33 4556677778888888877776543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=88.27  E-value=1.9  Score=34.20  Aligned_cols=91  Identities=16%  Similarity=0.134  Sum_probs=59.2

Q ss_pred             CCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCCccEEEechhhhhcCC
Q 018606           82 GSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        82 ~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~----~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      ..+|+=+|||. |..+.   ...+..|+++|.++..++.+++.++.++.+|..+..    ..-..+|+|+....     +
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~-----~   80 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS-----D   80 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS-----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC-----C
Confidence            35789999975 44322   245789999999999999888888999999987632    12245788876432     3


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .+ ....+....+.+. ...++...-
T Consensus        81 ~~-~n~~~~~~a~~~~-~~~iia~~~  104 (141)
T 3llv_A           81 DE-FNLKILKALRSVS-DVYAIVRVS  104 (141)
T ss_dssp             HH-HHHHHHHHHHHHC-CCCEEEEES
T ss_pred             HH-HHHHHHHHHHHhC-CceEEEEEc
Confidence            22 2334444555555 555555443

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=88.04  E-value=0.67  Score=42.71  Aligned_cols=91  Identities=8%  Similarity=-0.032  Sum_probs=62.1

Q ss_pred             CCCCCCEEEEECC--ccccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGC--G~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+.++.+||-.|+  |.|..+.   ...+++|+++|.++..++.+++.+.+.. .|.....        .....+|+++.
T Consensus       137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~D~vi~  215 (327)
T 1qor_A          137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQV-INYREEDLVERLKEITGGKKVRVVYD  215 (327)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE-EECCCccHHHHHHHHhCCCCceEEEE
Confidence            5678999999994  3454432   2456799999999998888887765533 2433211        11236899987


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ...     .     ..+..+.+.|++||++++.-.
T Consensus       216 ~~g-----~-----~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          216 SVG-----R-----DTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             CSC-----G-----GGHHHHHHTEEEEEEEEECCC
T ss_pred             CCc-----h-----HHHHHHHHHhcCCCEEEEEec
Confidence            654     1     246778899999999876643

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=87.95  E-value=0.74  Score=42.59  Aligned_cols=91  Identities=16%  Similarity=0.119  Sum_probs=62.6

Q ss_pred             CCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+.+|.+||-+|++  -|..+.   ...+++|+++|.++.-++.+++.+.+... |.....        .....+|+|+.
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~-~~~~~~~~~~~~~~~~~~g~D~vid  223 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLI-NASKEDILRQVLKFTNGKGVDASFD  223 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEE-eCCCchHHHHHHHHhCCCCceEEEE
Confidence            56889999999953  344332   24677999999999999999888765432 222211        11346899988


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ...-          ..+..+.+.|++||++++.-.
T Consensus       224 ~~g~----------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          224 SVGK----------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             CCGG----------GGHHHHHHHEEEEEEEEECCC
T ss_pred             CCCh----------HHHHHHHHHhccCCEEEEEcC
Confidence            6542          246677889999999887643

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=87.83  E-value=0.92  Score=42.63  Aligned_cols=92  Identities=14%  Similarity=0.172  Sum_probs=62.9

Q ss_pred             hCCCCCCEEEEECC-c-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCCccEEEe
Q 018606           77 NSLPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAIS  144 (353)
Q Consensus        77 ~~l~~~~~VLDvGC-G-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-------~~~~~fD~Vi~  144 (353)
                      ..+.+|.+||-+|+ | .|.++.   ...+++|+++|.++..++.+++.+.+.+. |.....       .....+|+|+.
T Consensus       159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~-~~~~~~~~~~~~~~~~~g~D~vid  237 (362)
T 2c0c_A          159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPI-NYKTEPVGTVLKQEYPEGVDVVYE  237 (362)
T ss_dssp             TCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEE-ecCChhHHHHHHHhcCCCCCEEEE
Confidence            36788999999993 3 355432   24577999999999999999887765432 322211       11246899987


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ...     .     ..+..+.+.|+++|++++.-.
T Consensus       238 ~~g-----~-----~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          238 SVG-----G-----AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             CSC-----T-----HHHHHHHHHEEEEEEEEECCC
T ss_pred             CCC-----H-----HHHHHHHHHHhcCCEEEEEeC
Confidence            643     1     357788899999999877643

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=87.68  E-value=0.9  Score=42.53  Aligned_cols=91  Identities=10%  Similarity=-0.062  Sum_probs=61.8

Q ss_pred             CCCCCCEEEEECC--ccccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGC--G~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+.+|.+||-.|+  |.|..+.   ...+++|+++|.++..++.+++.+.+.. .|.....        .....+|+++.
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~  237 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAG-FNYKKEDFSEATLKFTKGAGVNLILD  237 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEE-EecCChHHHHHHHHHhcCCCceEEEE
Confidence            5678999999995  3455432   2457799999999999998877766533 2333211        11236899987


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ...-          ..+....++|++||++++.-.
T Consensus       238 ~~G~----------~~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          238 CIGG----------SYWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             SSCG----------GGHHHHHHHEEEEEEEEECCC
T ss_pred             CCCc----------hHHHHHHHhccCCCEEEEEec
Confidence            6542          135667789999999887643

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=87.63  E-value=0.61  Score=43.06  Aligned_cols=92  Identities=14%  Similarity=0.015  Sum_probs=63.2

Q ss_pred             CCCCCCEEEEECC-c-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGC-G-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+.+|.+||-+|+ | .|..+.   ...+++|+++|.++.-++.+++.+.+... |.....        .....+|+|+.
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~-~~~~~~~~~~~~~~~~~~g~Dvvid  215 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETI-DYSHEDVAKRVLELTDGKKCPVVYD  215 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE-eCCCccHHHHHHHHhCCCCceEEEE
Confidence            5678999999993 3 355432   24577999999999999999987754332 322211        12246899987


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ...-          ..+....+.|++||++++.-..
T Consensus       216 ~~g~----------~~~~~~~~~l~~~G~iv~~g~~  241 (325)
T 3jyn_A          216 GVGQ----------DTWLTSLDSVAPRGLVVSFGNA  241 (325)
T ss_dssp             SSCG----------GGHHHHHTTEEEEEEEEECCCT
T ss_pred             CCCh----------HHHHHHHHHhcCCCEEEEEecC
Confidence            6432          2466778999999998887543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=87.62  E-value=0.16  Score=46.76  Aligned_cols=59  Identities=19%  Similarity=0.226  Sum_probs=39.1

Q ss_pred             CCeEEEeeCCC-CC-CCCCCccEEEechhhhhcCC-----------------hhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          121 GHEVLVADAVN-LP-YRSDFGDAAISIAVLHHLST-----------------ESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       121 ~i~~~~~D~~~-l~-~~~~~fD~Vi~~~vl~h~~~-----------------~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .+.++++|+.. +. +++++||+|++.--.....+                 ......++.++.|+|||||.+++..-
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            35788888876 32 55788999998432211000                 01134678899999999999988864

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=87.59  E-value=0.49  Score=44.14  Aligned_cols=91  Identities=13%  Similarity=0.098  Sum_probs=61.6

Q ss_pred             CCCCCCEEEEECCc--cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCC-CCC------CCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NLP------YRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG--~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~-~l~------~~~~~fD~Vi~~  145 (353)
                      .+.+|.+||=+|++  .|.++.   ...|++|++++.++.-++.+++.+.+.+. |.. .+.      .....+|+|+..
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~-~~~~~~~~~v~~~~~~~g~Dvvid~  234 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVL-PLEEGWAKAVREATGGAGVDMVVDP  234 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEE-ESSTTHHHHHHHHTTTSCEEEEEES
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEe-cCchhHHHHHHHHhCCCCceEEEEC
Confidence            56789999999983  355432   25677999999999989999888765432 222 110      112368999876


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..-          ..+..+.+.|++||++++.-.
T Consensus       235 ~g~----------~~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          235 IGG----------PAFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             CC------------CHHHHHHTEEEEEEEEEC--
T ss_pred             Cch----------hHHHHHHHhhcCCCEEEEEEc
Confidence            532          146678899999999987743

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=86.78  E-value=1.5  Score=40.46  Aligned_cols=91  Identities=9%  Similarity=0.031  Sum_probs=62.1

Q ss_pred             CCCCCCEEEEECC--ccccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGC--GNGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGC--G~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+.++.+||-.|+  |.|..+.   ...+++|+++|.++..++.+++.+.+.. .|.....        .....+|+++.
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~i~~~~~~~~~d~vi~  220 (333)
T 1wly_A          142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHT-INYSTQDFAEVVREITGGKGVDVVYD  220 (333)
T ss_dssp             CCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE-EECCCHHHHHHHHHHhCCCCCeEEEE
Confidence            5678999999996  3455432   2457799999999988888887765533 2443221        11235899987


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ...-          ..+..+.+.|++||++++.-.
T Consensus       221 ~~g~----------~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          221 SIGK----------DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             CSCT----------TTHHHHHHTEEEEEEEEECCC
T ss_pred             CCcH----------HHHHHHHHhhccCCEEEEEec
Confidence            6531          246778899999999876643

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=86.60  E-value=0.31  Score=44.56  Aligned_cols=89  Identities=15%  Similarity=0.054  Sum_probs=59.4

Q ss_pred             CCCCCEEEEECC-c-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CCCC--CCCccEEEechhhhh
Q 018606           79 LPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LPYR--SDFGDAAISIAVLHH  150 (353)
Q Consensus        79 l~~~~~VLDvGC-G-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l~~~--~~~fD~Vi~~~vl~h  150 (353)
                      +.+|.+||-+|+ | .|..+.   ...+++|+++|.++..++.+++.+.+... |... ..+.  -..+|+|+. ..-  
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~-~~~~~~~~~~~~~~~d~vid-~g~--  198 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAA-TYAEVPERAKAWGGLDLVLE-VRG--  198 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEE-EGGGHHHHHHHTTSEEEEEE-CSC--
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEE-ECCcchhHHHHhcCceEEEE-CCH--
Confidence            778999999998 3 355432   24567999999999988888877765432 3221 0000  046899987 421  


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                              ..+....+.|+++|++++.-.
T Consensus       199 --------~~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          199 --------KEVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             --------TTHHHHHTTEEEEEEEEEC--
T ss_pred             --------HHHHHHHHhhccCCEEEEEeC
Confidence                    136778899999999876543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=86.43  E-value=3.2  Score=38.32  Aligned_cols=94  Identities=13%  Similarity=0.085  Sum_probs=63.2

Q ss_pred             hCCCCCCEEEEECCccccccc----cCCC-cEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~----~~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi  143 (353)
                      ..+.+|.+||=.|+|....+.    ...+ ..++++|.++.-++.|++.+.+... |.....        -....+|+|+
T Consensus       156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i-~~~~~~~~~~~~~~~~~~g~d~v~  234 (346)
T 4a2c_A          156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTF-NSSEMSAPQMQSVLRELRFNQLIL  234 (346)
T ss_dssp             TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHGGGCSSEEEE
T ss_pred             hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEE-eCCCCCHHHHHHhhcccCCccccc
Confidence            356789999999998644321    2334 4678999999999999998765433 222211        1124567777


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ....     .    ...+....++|++||++++.-..
T Consensus       235 d~~G-----~----~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          235 ETAG-----V----PQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             ECSC-----S----HHHHHHHHHHCCTTCEEEECCCC
T ss_pred             cccc-----c----cchhhhhhheecCCeEEEEEecc
Confidence            6432     2    35678888999999998877543

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=85.31  E-value=1.6  Score=40.01  Aligned_cols=89  Identities=15%  Similarity=0.081  Sum_probs=58.5

Q ss_pred             hCCCCCCEEEEEC-Ccc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-C--CCCCccEEEechhh
Q 018606           77 NSLPSGSLVLDAG-CGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-Y--RSDFGDAAISIAVL  148 (353)
Q Consensus        77 ~~l~~~~~VLDvG-CG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-~--~~~~fD~Vi~~~vl  148 (353)
                      ..+.+|.+||=+| +|. |.++.   ...+++|++++ +..-++.+++.+.+... |..... +  .-..+|+|+.... 
T Consensus       148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~g~D~v~d~~g-  224 (321)
T 3tqh_A          148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAEQCI-NYHEEDFLLAISTPVDAVIDLVG-  224 (321)
T ss_dssp             TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCSEEE-ETTTSCHHHHCCSCEEEEEESSC-
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCCEEE-eCCCcchhhhhccCCCEEEECCC-
Confidence            4678999999997 554 55432   24577999998 45558888888766432 222211 1  1146899887532 


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                          .     ..+....++|+++|+++..
T Consensus       225 ----~-----~~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          225 ----G-----DVGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             ----H-----HHHHHHGGGEEEEEEEEEC
T ss_pred             ----c-----HHHHHHHHhccCCCEEEEe
Confidence                1     2237788999999998875

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=84.95  E-value=2  Score=41.62  Aligned_cols=91  Identities=23%  Similarity=0.260  Sum_probs=63.4

Q ss_pred             CCCCCCEEEEECC-c-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC------------------
Q 018606           78 SLPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY------------------  134 (353)
Q Consensus        78 ~l~~~~~VLDvGC-G-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~------------------  134 (353)
                      .+.+|.+||=+|+ | .|.++.   ...++++++++.++.-++.+++.+.+.+. |.....+                  
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi-~~~~~d~~~~~~~~~~~~~~~~~~~  303 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAII-DRNAEGYRFWKDENTQDPKEWKRFG  303 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEE-ETTTTTCCSEEETTEECHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEE-ecCcCcccccccccccchHHHHHHH
Confidence            5688999999998 4 344432   25678999999999999999888765432 2222111                  


Q ss_pred             -------CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          135 -------RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       135 -------~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                             ....+|+|+....          ...+....++|++||++++.-.
T Consensus       304 ~~i~~~t~g~g~Dvvid~~G----------~~~~~~~~~~l~~~G~iv~~G~  345 (456)
T 3krt_A          304 KRIRELTGGEDIDIVFEHPG----------RETFGASVFVTRKGGTITTCAS  345 (456)
T ss_dssp             HHHHHHHTSCCEEEEEECSC----------HHHHHHHHHHEEEEEEEEESCC
T ss_pred             HHHHHHhCCCCCcEEEEcCC----------chhHHHHHHHhhCCcEEEEEec
Confidence                   1247899887532          1467778899999999887643

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=84.48  E-value=2.4  Score=39.41  Aligned_cols=91  Identities=11%  Similarity=0.100  Sum_probs=62.2

Q ss_pred             hCCCCC--CEEEEECCcc--ccccc---cCCCc-EEEEEeCCHHHHHHHHH-cCCeEEEeeCCCCC-------CCCCCcc
Q 018606           77 NSLPSG--SLVLDAGCGN--GKYLG---LNPDC-FFVGCDISPSLIKICVD-RGHEVLVADAVNLP-------YRSDFGD  140 (353)
Q Consensus        77 ~~l~~~--~~VLDvGCG~--G~~~~---~~~~~-~v~gvD~S~~~l~~a~~-~~i~~~~~D~~~l~-------~~~~~fD  140 (353)
                      ..+.++  .+||-.|++.  |..+.   ...|+ +|+++|.++.-++.+++ .+.... .|.....       ...+.+|
T Consensus       154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~d  232 (357)
T 2zb4_A          154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAA-INYKKDNVAEQLRESCPAGVD  232 (357)
T ss_dssp             SCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEE-EETTTSCHHHHHHHHCTTCEE
T ss_pred             cCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceE-EecCchHHHHHHHHhcCCCCC
Confidence            357888  9999999833  44432   24677 99999999988888876 565433 3443211       1112689


Q ss_pred             EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +++....          ...+..+.++|++||++++.-
T Consensus       233 ~vi~~~G----------~~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          233 VYFDNVG----------GNISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             EEEESCC----------HHHHHHHHHTEEEEEEEEECC
T ss_pred             EEEECCC----------HHHHHHHHHHhccCcEEEEEC
Confidence            9987654          145778889999999988664

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=84.44  E-value=0.6  Score=43.45  Aligned_cols=42  Identities=14%  Similarity=0.130  Sum_probs=36.5

Q ss_pred             CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606           79 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      ..+|..|||.-||+|..+.  ...+.+.+|+|+++..++.++++
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r  293 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFR  293 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGG
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence            4688999999999999753  35578999999999999999987

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=84.39  E-value=1.1  Score=41.78  Aligned_cols=89  Identities=16%  Similarity=0.066  Sum_probs=61.0

Q ss_pred             CCCCCCEEEEECC-c-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGC-G-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~------~~~~~fD~Vi~~~  146 (353)
                      .+.+|.+||-+|+ | .|.++.   ...+++|+++ .++.-++.+++.+.+.+. +-..+.      .....+|+|+...
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~vid~~  224 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDLVYDTL  224 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEEEEESS
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceEEEECC
Confidence            5678999999995 3 354432   2567799999 889889999888877622 111110      1124689998754


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .     .     ..+....+.|+++|++++..
T Consensus       225 g-----~-----~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          225 G-----G-----PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             C-----T-----HHHHHHHHHEEEEEEEEESC
T ss_pred             C-----c-----HHHHHHHHHHhcCCeEEEEc
Confidence            2     1     35777888999999988764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=84.14  E-value=0.98  Score=42.25  Aligned_cols=92  Identities=14%  Similarity=0.059  Sum_probs=62.6

Q ss_pred             CCCCCCEEEEECC-c-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC-------CCCCccEEEec
Q 018606           78 SLPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY-------RSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGC-G-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~-------~~~~fD~Vi~~  145 (353)
                      .+.+|.+||-+|+ | .|..+.   ...|++|+++|.++.-++.+++.+.+... |.....+       ....+|+|+..
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~-~~~~~~~~~~~~~~~~~g~Dvvid~  242 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGI-NYRSEDFAAVIKAETGQGVDIILDM  242 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHHSSCEEEEEES
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEE-eCCchHHHHHHHHHhCCCceEEEEC
Confidence            5678999999954 3 354432   25678999999999999999988765432 3222111       12468999876


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ..-          ..+....+.|+++|++++....
T Consensus       243 ~g~----------~~~~~~~~~l~~~G~iv~~g~~  267 (353)
T 4dup_A          243 IGA----------AYFERNIASLAKDGCLSIIAFL  267 (353)
T ss_dssp             CCG----------GGHHHHHHTEEEEEEEEECCCT
T ss_pred             CCH----------HHHHHHHHHhccCCEEEEEEec
Confidence            532          1466778899999998876543

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=83.91  E-value=0.56  Score=43.31  Aligned_cols=90  Identities=13%  Similarity=0.112  Sum_probs=59.0

Q ss_pred             CCCCCC-EEEEECC-c-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC------CCCCCCccEEEec
Q 018606           78 SLPSGS-LVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------PYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~-~VLDvGC-G-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l------~~~~~~fD~Vi~~  145 (353)
                      .+.++. +||-+|+ | .|.++.   ...+++|++++.++.-++.+++.+.+.+. |..+.      ....+.+|+|+..
T Consensus       145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~~~~~~d~vid~  223 (328)
T 1xa0_A          145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVL-AREDVMAERIRPLDKQRWAAAVDP  223 (328)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEE-ECC---------CCSCCEEEEEEC
T ss_pred             CCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEE-ecCCcHHHHHHHhcCCcccEEEEC
Confidence            466775 8999997 3 355432   24567899999998888888887654322 22111      1223468998875


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ..     .     ..+....+.|+++|++++.-
T Consensus       224 ~g-----~-----~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          224 VG-----G-----RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             ST-----T-----TTHHHHHHTEEEEEEEEECS
T ss_pred             Cc-----H-----HHHHHHHHhhccCCEEEEEe
Confidence            43     1     13667788999999987764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=83.33  E-value=1.2  Score=41.00  Aligned_cols=85  Identities=14%  Similarity=0.100  Sum_probs=58.3

Q ss_pred             EEEEECC-c-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC----CCCCCCccEEEechhhhhcCCh
Q 018606           84 LVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL----PYRSDFGDAAISIAVLHHLSTE  154 (353)
Q Consensus        84 ~VLDvGC-G-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l----~~~~~~fD~Vi~~~vl~h~~~~  154 (353)
                      .||=+|+ | .|.++.   ...+++|+++|.++.-++.+++.+.+.+. |....    .+..+.+|+|+....       
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi-~~~~~~~~~~~~~~~~d~v~d~~g-------  220 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRIL-SRDEFAESRPLEKQLWAGAIDTVG-------  220 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEE-EGGGSSCCCSSCCCCEEEEEESSC-------
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEE-ecCCHHHHHhhcCCCccEEEECCC-------
Confidence            4999997 3 355432   25577999999999999999988765432 22221    123457898876431       


Q ss_pred             hHHHHHHHHHHhccccCcEEEEEEc
Q 018606          155 SRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       155 e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                         ...+....+.|+++|++++.-.
T Consensus       221 ---~~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          221 ---DKVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             ---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             ---cHHHHHHHHHHhcCCEEEEEec
Confidence               1268889999999999887744

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=82.95  E-value=1.2  Score=42.33  Aligned_cols=63  Identities=16%  Similarity=-0.022  Sum_probs=48.4

Q ss_pred             CEEEEECCccccccc-c-CCCc-EEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCC--------CCCCccEEEec
Q 018606           83 SLVLDAGCGNGKYLG-L-NPDC-FFVGCDISPSLIKICVDR--GHEVLVADAVNLPY--------RSDFGDAAISI  145 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~-~-~~~~-~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~--------~~~~fD~Vi~~  145 (353)
                      .++||+-||.|.+.. + ..|. .+.++|+++..++..+.+  +..++.+|+..+..        ....+|+|+..
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~gg   78 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG   78 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEec
Confidence            479999999999743 2 3455 567999999999888876  56788899988642        34678999874

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=82.55  E-value=2.8  Score=38.31  Aligned_cols=94  Identities=14%  Similarity=0.015  Sum_probs=58.5

Q ss_pred             HHHhCCCCCCEEEEECCccccccccCCCcEEEEEeCCHHHHHHHHHcCCeEE-EeeCCCCCCCCCCccEEEech----hh
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVL-VADAVNLPYRSDFGDAAISIA----VL  148 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~~~~~~~v~gvD~S~~~l~~a~~~~i~~~-~~D~~~l~~~~~~fD~Vi~~~----vl  148 (353)
                      .++.++ +|.+||=|  +   +--..|+-+|.-+++.+         +.++. .+|+..-+. .+.+|+|++..    .-
T Consensus       157 ~~~~k~-~g~~vl~v--~---~~~~~p~k~v~wi~Pi~---------GAt~~~~lDfg~p~~-~~k~DvV~SDMApn~sG  220 (320)
T 2hwk_A          157 SFVSKL-KGRTVLVV--G---EKLSVPGKMVDWLSDRP---------EATFRARLDLGIPGD-VPKYDIIFVNVRTPYKY  220 (320)
T ss_dssp             HHHHTS-SCSEEEEE--E---SCCCCTTSEEEEEESST---------TCSEECCGGGCSCTT-SCCEEEEEEECCCCCCS
T ss_pred             HHHhhC-CCcEEEEE--e---cccccCCceeEeeccCC---------CceeecccccCCccc-cCcCCEEEEcCCCCCCC
Confidence            344443 35566666  2   11224666777777744         55666 777776433 36799999943    33


Q ss_pred             hh-c--CChhH-HHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          149 HH-L--STESR-RKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       149 ~h-~--~~~e~-~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      || -  .|..+ ..-++.-..++|+|||.+++-+|...+
T Consensus       221 h~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaD  259 (320)
T 2hwk_A          221 HHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYAD  259 (320)
T ss_dssp             CHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCS
T ss_pred             ccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence            33 1  11111 233677888999999999999999773

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=82.37  E-value=1.6  Score=35.45  Aligned_cols=94  Identities=16%  Similarity=0.154  Sum_probs=57.2

Q ss_pred             CCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHH-HcCCeEEEeeCCCCC----CCCCCccEEEechhhh
Q 018606           79 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICV-DRGHEVLVADAVNLP----YRSDFGDAAISIAVLH  149 (353)
Q Consensus        79 l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~-~~~i~~~~~D~~~l~----~~~~~fD~Vi~~~vl~  149 (353)
                      ..++.+|+=+|||. |..+.   ...+..|+++|.++..++.++ ..+..++.+|.....    ..-..+|+|+...   
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~---   92 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT---   92 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS---
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe---
Confidence            34678999999986 54432   245679999999988776665 456777777765421    1123578887753   


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                        .+.. ....+..+.+.+.+...++...
T Consensus        93 --~~~~-~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           93 --NDDS-TNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             --SCHH-HHHHHHHHHHHTSCCSEEEEEC
T ss_pred             --CCcH-HHHHHHHHHHHHCCCCeEEEEE
Confidence              2322 2344445555555555555544

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=82.35  E-value=0.41  Score=44.64  Aligned_cols=90  Identities=16%  Similarity=0.134  Sum_probs=59.4

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC-------CCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPY-------RSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~-------~~~~fD~Vi~~  145 (353)
                      .+ +|.+||-+|+|. |.++.   ...++ +|+++|.++.-++.+++. .+.+ .|.....+       ....+|+|+..
T Consensus       162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v-~~~~~~~~~~~~~~~~~~g~D~vid~  238 (343)
T 2dq4_A          162 GV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRL-VNPLEEDLLEVVRRVTGSGVEVLLEF  238 (343)
T ss_dssp             CC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEE-ECTTTSCHHHHHHHHHSSCEEEEEEC
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhc-cCcCccCHHHHHHHhcCCCCCEEEEC
Confidence            56 899999999864 44432   24567 899999999888877665 3322 23222110       02358999875


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ..     .    ...+....+.|+++|++++.-.
T Consensus       239 ~g-----~----~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          239 SG-----N----EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             SC-----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CC-----C----HHHHHHHHHHHhcCCEEEEEec
Confidence            42     2    2467888899999999877643

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=82.27  E-value=4.7  Score=35.67  Aligned_cols=68  Identities=15%  Similarity=0.107  Sum_probs=49.8

Q ss_pred             CEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606           83 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        83 ~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~  152 (353)
                      .+||=.|+|. |..+.   ...+..|++++.++.-.......+++++.+|+.++.  -..+|+||..+......
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~~~~   77 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPDSGG   77 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCBTTB
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCccccc
Confidence            5799999642 33321   245789999999988776666678999999999866  45679999877654433

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=82.11  E-value=7.4  Score=30.09  Aligned_cols=89  Identities=18%  Similarity=0.163  Sum_probs=55.7

Q ss_pred             CCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCC----CCCCCccEEEechhhhhcC
Q 018606           82 GSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLP----YRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        82 ~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~----~~~~~fD~Vi~~~vl~h~~  152 (353)
                      +.+|+=+|+|. |..+.   ...+..|+++|.++..++.+++. ++.++.+|.....    ..-..+|+|+...     +
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~-----~   78 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT-----G   78 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----S
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee-----C
Confidence            35788899976 44332   14567999999999888776654 7778888865421    1124578887763     2


Q ss_pred             ChhHHHHHHHHHHhccccCcEEEEE
Q 018606          153 TESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       153 ~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      +.+ ....+..+.+.+.++ .+++.
T Consensus        79 ~~~-~~~~~~~~~~~~~~~-~ii~~  101 (140)
T 1lss_A           79 KEE-VNLMSSLLAKSYGIN-KTIAR  101 (140)
T ss_dssp             CHH-HHHHHHHHHHHTTCC-CEEEE
T ss_pred             Cch-HHHHHHHHHHHcCCC-EEEEE
Confidence            222 234555666667775 54443

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=81.50  E-value=0.57  Score=44.01  Aligned_cols=64  Identities=13%  Similarity=0.037  Sum_probs=48.1

Q ss_pred             CEEEEECCccccccc-c-CCC---cEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCC---CCCCccEEEech
Q 018606           83 SLVLDAGCGNGKYLG-L-NPD---CFFVGCDISPSLIKICVDR--GHEVLVADAVNLPY---RSDFGDAAISIA  146 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~-~-~~~---~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~---~~~~fD~Vi~~~  146 (353)
                      .++||+-||.|.+.. + ..|   -.+.++|+++.+++..+.+  ...++.+|+..+..   +...+|+++...
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            479999999999742 1 233   2699999999999999887  45678899988642   112589998843

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=81.25  E-value=1.1  Score=41.34  Aligned_cols=92  Identities=16%  Similarity=0.125  Sum_probs=60.3

Q ss_pred             CCCCCC-EEEEECC-c-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEE-e-eC--CCC-CCCCCCccEEEech
Q 018606           78 SLPSGS-LVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLV-A-DA--VNL-PYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~-~VLDvGC-G-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~-~-D~--~~l-~~~~~~fD~Vi~~~  146 (353)
                      .+.++. +||=+|+ | .|.++.   ...+++|++++.++.-++.+++.+.+.+. . +.  ..+ ......+|+|+...
T Consensus       146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~  225 (330)
T 1tt7_A          146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPV  225 (330)
T ss_dssp             TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESC
T ss_pred             CcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECC
Confidence            466775 8999998 3 354432   24467899999998888888887654332 1 11  111 12234689988754


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      .     .     ..+....+.|++||++++.-.
T Consensus       226 g-----~-----~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          226 G-----G-----KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             C-----T-----HHHHHHHTTEEEEEEEEECCC
T ss_pred             c-----H-----HHHHHHHHhhcCCCEEEEEec
Confidence            2     2     257788899999999887643

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=80.73  E-value=1.6  Score=42.00  Aligned_cols=42  Identities=10%  Similarity=0.010  Sum_probs=33.7

Q ss_pred             CCCCCEEEEECCccccccc-----cCC-CcEEEEEeCCHHHHHHHHHc
Q 018606           79 LPSGSLVLDAGCGNGKYLG-----LNP-DCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~-----~~~-~~~v~gvD~S~~~l~~a~~~  120 (353)
                      +.++..++||||+.|.++.     ..+ ..+|+++|+++...+..+++
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n  271 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNV  271 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHH
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence            4788999999999999743     233 37999999999988877654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=80.26  E-value=2.6  Score=41.71  Aligned_cols=87  Identities=17%  Similarity=0.156  Sum_probs=57.4

Q ss_pred             CCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606           79 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE  154 (353)
Q Consensus        79 l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~  154 (353)
                      ..+|.+|+=+|+|. |..+.   ...|++|+++|+++.-++.|++.++++.  ++..+ +  ...|+|+....-.++-+ 
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~--~l~e~-l--~~aDvVi~atgt~~~i~-  344 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVV--TVEEA-I--GDADIVVTATGNKDIIM-  344 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC--CHHHH-G--GGCSEEEECSSSSCSBC-
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEe--cHHHH-H--hCCCEEEECCCCHHHHH-
Confidence            56889999999986 44332   2456799999999998888888777642  22221 1  35699888642222211 


Q ss_pred             hHHHHHHHHHHhccccCcEEEEEE
Q 018606          155 SRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       155 e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                             .+..+.+|+||+++..-
T Consensus       345 -------~~~l~~mk~ggilvnvG  361 (494)
T 3ce6_A          345 -------LEHIKAMKDHAILGNIG  361 (494)
T ss_dssp             -------HHHHHHSCTTCEEEECS
T ss_pred             -------HHHHHhcCCCcEEEEeC
Confidence                   24566789999876553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	353
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	5e-08
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	7e-08
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	1e-07
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	1e-07
d2avna1	246	c.66.1.41 (A:1-246) Hypothetical methyltransferase	2e-06
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	4e-06
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	8e-06
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	2e-05
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	2e-05
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	2e-05
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	2e-05
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	3e-05
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	3e-04
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	3e-04
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	5e-04
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	5e-04
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	6e-04
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	0.001
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	0.001
d1yzha1	204	c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra	0.001
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	0.001
d2fcaa1	204	c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr	0.002
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	0.004
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	0.004

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.9 bits (120), Expect = 5e-08
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 13/215 (6%)

Query: 47  KKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS-LPSGSLVLDAGCGNGKYLGLNPD---- 101
           K+Y +RV+       S    ++   +   L   +     VLD  CG G +  L  D    
Sbjct: 3   KEY-YRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFE 61

Query: 102 ----CFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 157
                                +   E +V DA  L +     D  I I  + H       
Sbjct: 62  VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPL-EL 120

Query: 158 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 217
            +  +E+ RV+K     ++    + +    L        + ++ + I     R      +
Sbjct: 121 NQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFK 180

Query: 218 TLESIPETEDNGSEEQGKE--PKQSVPDKLWESIS 250
           + +       N   + G E   K     +  E + 
Sbjct: 181 SEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVG 215

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 50.0 bits (118), Expect = 7e-08
 Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 21/143 (14%)

Query: 46  EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFV 105
           ++ Y    Y     H           V      +  G   LD GCGNG+         + 
Sbjct: 5   DENYFTEKYGLTRTH---------SDVLAAAKVVAPGR-TLDLGCGNGRNSLYLAANGYD 54

Query: 106 GCDISPS---------LIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 156
                 +         +         +  + D   L +  ++ D  +S  V+  L  +  
Sbjct: 55  VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEY-DFILSTVVMMFLEAQ-T 112

Query: 157 RKKAIEELVRVVKKGSLVLITVW 179
               I  + R  K G   LI   
Sbjct: 113 IPGLIANMQRCTKPGGYNLIVAA 135

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 16/120 (13%)

Query: 79  LPSGSLVLDAGCGNGKYLGLNPDCFF--VGCDISPSLIKIC--------VDRGHEVLVAD 128
                + +D GCG G                D +P  I           +     ++  D
Sbjct: 31  PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90

Query: 129 AVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 188
           A     +    D A+       L      ++ +  +   +K G  +++T   +E + +++
Sbjct: 91  APEALCKIPDIDIAVVGGSGGEL------QEILRIIKDKLKPGGRIIVTAILLETKFEAM 144

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 17/160 (10%), Positives = 44/160 (27%), Gaps = 34/160 (21%)

Query: 67  AKWPKVATFLN--SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR 120
             +  VA  ++   +    L +D G G G+ +             G + +    K     
Sbjct: 135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 194

Query: 121 GHE----------------VLVADAVNLPYRSDFGDAA-ISIAVLHHLSTESRRKKAIEE 163
             E                +   D ++  +R    + + I +               ++E
Sbjct: 195 DREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAF---GPEVDHQLKE 251

Query: 164 LVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW 203
               +K+G  ++ +        K        +  + + + 
Sbjct: 252 RFANMKEGGRIVSS--------KPFAPLNFRINSRNLSDI 283

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 7/140 (5%)

Query: 47  KKYVHRVYDAIAPH----FSSTRFAKWPK-VATFLNS-LPSGSLVLDAGCGNGKY-LGLN 99
           K      YD IA      + + ++  + + + +FL   L +   VLD G G GK+ L L 
Sbjct: 2   KLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQ 61

Query: 100 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 159
              F V        +           V +A         G     +A+   LS    + K
Sbjct: 62  ERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDK 121

Query: 160 AIEELVRVVKKGSLVLITVW 179
           A  E+ RV+    L++ TV 
Sbjct: 122 AFSEIRRVLVPDGLLIATVD 141

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 21/138 (15%)

Query: 51  HRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGC 107
           HR+++            K+  +   L  +  G+ +LD G G+G        +      G 
Sbjct: 11  HRIHNPFTEE-------KYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHGITGTGI 62

Query: 108 DISPSLIKICVDRGHEVLVADAVNLPYRSDFG-------DAAISIAVLHHLSTESRRKKA 160
           D+S         R  E+ V++ V+  +    G       D A  +              A
Sbjct: 63  DMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIA---GGFAGA 119

Query: 161 IEELVRVVKKGSLVLITV 178
            E L + +K G ++LI  
Sbjct: 120 EELLAQSLKPGGIMLIGE 137

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 44.6 bits (104), Expect = 8e-06
 Identities = 24/128 (18%), Positives = 34/128 (26%), Gaps = 13/128 (10%)

Query: 65  RFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRG 121
               + K          G  VLD GCG G             + G DI+   I     R 
Sbjct: 8   NANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA 67

Query: 122 HE--------VLVADAVNLPYRSDFGDAAISIA--VLHHLSTESRRKKAIEELVRVVKKG 171
                         D+             IS      +  ST      A   + R ++ G
Sbjct: 68  RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 127

Query: 172 SLVLITVW 179
              ++TV 
Sbjct: 128 GYFIMTVP 135

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 22/153 (14%)

Query: 48  KYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY-LGLNPDCFFV- 105
               RV+        S R A++      L        VLD  CG G   + L  + F V 
Sbjct: 24  GEAARVWQLYIGDTRS-RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVT 82

Query: 106 GCDISPSLIKICVDRGHEVLVADAV---------------NLPYRSDFGDAAISIAVLHH 150
             D S  ++K  +          A                ++P    F           H
Sbjct: 83  SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAH 142

Query: 151 L----STESRRKKAIEELVRVVKKGSLVLITVW 179
           L      +S  + A++ +  +V+ G L++I   
Sbjct: 143 LPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 16/160 (10%)

Query: 50  VHRVYDAIAPHFSS---TRFAKWPKVATFLNSL------PSGSLVLDAGCGNGKYLGLNP 100
           ++ +Y  +A ++ +    R  +      F+  +           VLD  CG G       
Sbjct: 1   MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA 60

Query: 101 DCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFG-------DAAISIAVLHHLST 153
           +  +    +      + V R         +                DA            
Sbjct: 61  ERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFD 120

Query: 154 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT 193
           E   +K   ++   +K G + +          +     W 
Sbjct: 121 EEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWN 160

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 13/113 (11%)

Query: 76  LNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV 130
           +  +     ++D GCG G         L     + G D   +L+    +    +      
Sbjct: 22  VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEF 81

Query: 131 NLPYRS-----DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 178
                +     D  D AI  A L H    +  +  +++++  VKKG  ++   
Sbjct: 82  LEGDATEIELNDKYDIAICHAFLLH---MTTPETMLQKMIHSVKKGGKIICFE 131

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 23/174 (13%)

Query: 79  LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------------- 120
           +  G+ VL   CG  + +          VG ++S + ++                     
Sbjct: 18  VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 77

Query: 121 ---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 177
              G E+   D   L  R     AA              R++ ++ L  ++ +    L+ 
Sbjct: 78  AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137

Query: 178 VWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSE 231
               +Q           + Q ++   +       +     TL S       G E
Sbjct: 138 TLEYDQALLE--GPPFSVPQTWLHRVMSGNWEVTKVGGQDTLHSSARGLKAGLE 189

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 20/155 (12%), Positives = 45/155 (29%), Gaps = 15/155 (9%)

Query: 53  VYDAIAPHF-----SSTRFAKWPK--VATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCF 103
            Y+  A  +     +   + KW    +   + +       LD  CG G            
Sbjct: 2   CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN 61

Query: 104 FVGCDISPSLIKICV------DRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 157
               D+S  ++               +   D  NL     F      +   +++      
Sbjct: 62  TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDL 121

Query: 158 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKW 192
           KK  + +   +K+G + +  + +  +  + L    
Sbjct: 122 KKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNND 156

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 32/146 (21%)

Query: 79  LPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------------- 120
           L  G   +D G G G  +             GC+I      + + +              
Sbjct: 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 273

Query: 121 ----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 176
                  +  +   N           + +        +    K +E++++  K G  ++ 
Sbjct: 274 LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDED--LNKKVEKILQTAKVGCKIIS 331

Query: 177 TVWAVEQEDKSLVTKWTPLTQKYVEE 202
                    KSL +    +    VE 
Sbjct: 332 L--------KSLRSLTYQINFYNVEN 349

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 6/115 (5%)

Query: 79  LPSGSLVLDAGCGNGK-----YLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP 133
           +  G  ++D G G+G         +         +      K+      +  + + V + 
Sbjct: 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK 160

Query: 134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 188
            R D  +      V             I++    +K G           Q  ++L
Sbjct: 161 VR-DISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETL 214

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 17/152 (11%)

Query: 54  YDAIAPHFS----STRFAKWPKVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVG 106
           Y     H        R   +         L    +VLD G G G    +         +G
Sbjct: 2   YAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIG 61

Query: 107 CDISPSLIKIC-------VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 159
            + S              +D    ++      +    +  D  IS  + + L  ES    
Sbjct: 62  IECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNT 121

Query: 160 AIEELVRVVKKGSLVL---ITVWAVEQEDKSL 188
            +    + +    L+     T++    ED+  
Sbjct: 122 VLHARDKWLAPDGLIFPDRATLYVTAIEDRQY 153

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 29/154 (18%), Positives = 47/154 (30%), Gaps = 22/154 (14%)

Query: 79  LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPS-------LIKICVDRGHEVLVADA 129
             +   VLD G G G             +G D +           +             A
Sbjct: 14  CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 73

Query: 130 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLV 189
            +LP+  D  D        HH    S  +KA+ E+ RV+K+    L+             
Sbjct: 74  ESLPFPDDSFDIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLVDH---------Y 121

Query: 190 TKWTPLTQKYVEEWIGPGSPR-VRSPSARTLESI 222
               P+  ++V        P  VR  S    +++
Sbjct: 122 APEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAM 155

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 22/208 (10%), Positives = 46/208 (22%), Gaps = 50/208 (24%)

Query: 47  KKYVHRVYDAIAPHFSSTRFAKWPK---VATFLNSLPSGSLVLDAGCGNGKY---LGLNP 100
           + Y+   Y             K+       TF      G  ++D G G   Y      + 
Sbjct: 14  RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS 73

Query: 101 DCFFVGCDISPSLIKICVDRGHE------------------------------------- 123
                  D +    +       +                                     
Sbjct: 74  FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKR 133

Query: 124 ----VLVADAVNLPYRSDFGDAAISIAVLHHLS-TESRRKKAIEELVRVVKKGSLVLITV 178
                +       P      D  +++  +     +    + A+  L  ++K G  ++ TV
Sbjct: 134 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193

Query: 179 WAVEQE--DKSLVTKWTPLTQKYVEEWI 204
                             L +  VE+ +
Sbjct: 194 TLRLPSYMVGKREFSCVALEKGEVEQAV 221

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 11/111 (9%)

Query: 79  LPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-----GHEVLVADA 129
           L     VL  G  +G  +     +  +      + S    +  ++          L+ DA
Sbjct: 54  LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA 113

Query: 130 VNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180
                 S   +      +   ++ +++ +         +K+   V+I V A
Sbjct: 114 SKPWKYSGIVEKV--DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 31/107 (28%), Positives = 37/107 (34%), Gaps = 16/107 (14%)

Query: 80  PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKI--CVDRGHEVLVADAVNLP 133
              + VLD GCG G Y        P+    G D+S   IK            VA +  LP
Sbjct: 83  DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP 142

Query: 134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 180
           +     DA I I                EEL RVVK G  V+     
Sbjct: 143 FSDTSMDAIIRIYAPCKA----------EELARVVKPGGWVITATPG 179

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 68  KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGH 122
           KW  +  F N  P   + ++ G G G ++      NPD  ++G DI  S++   +D+  
Sbjct: 23  KWRDL--FGNDNP---IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL 76

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 34/236 (14%), Positives = 59/236 (25%), Gaps = 28/236 (11%)

Query: 69  WPKVATF---LNSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDR 120
           +PK       +  +  G  VL+AG G+G         +      +  ++      +    
Sbjct: 83  FPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKN 142

Query: 121 ----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK--------KAIEELVRVV 168
                    ++     P   DF    IS A     S                +      +
Sbjct: 143 YKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHL 202

Query: 169 KKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 228
           K G +  + V  + Q  + L+            E I            R        + N
Sbjct: 203 KHGGVCAVYVVNITQVIE-LLDGIRTCELALSCEKISEV-------IVRDWLVCLAKQKN 254

Query: 229 GSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHLPYHR 284
           G   Q  E K +   +L     +  + E       +          F     P H 
Sbjct: 255 GILAQKVESKINTDVQLDSQEKIGVKGELFQEDDHEESHSDFPYGSFPYVARPVHW 310

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 9/60 (15%)

Query: 68  KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHE 123
           KW  V  F N  P   + ++ G G G+++      NPD  ++G ++  S+I   V +  +
Sbjct: 21  KWNTV--FGNDNP---IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD 75

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 15/138 (10%), Positives = 32/138 (23%), Gaps = 29/138 (21%)

Query: 68  KWPKVATFLNSLPSGSLVLDAGCGNGKYL----------GLNPDCFFVGCDISPSLIKI- 116
           K P +   +    S   +L  G G G+                       + S   I   
Sbjct: 27  KLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKY 86

Query: 117 ---------------CVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAI 161
                             +         +         D    I +L+++         +
Sbjct: 87  KELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV---KDIPATL 143

Query: 162 EELVRVVKKGSLVLITVW 179
           +    ++   + +LI V 
Sbjct: 144 KFFHSLLGTNAKMLIIVV 161

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 6/113 (5%)

Query: 79  LPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP 133
           L  G  +L+ G G+G         LN        +     +K  +D   E      V   
Sbjct: 83  LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS 142

Query: 134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 186
                   +  +               ++++  ++K GS+    +   +Q +K
Sbjct: 143 RSDIADFISDQMYDAVIADIP-DPWNHVQKIASMMKPGSVATFYLPNFDQSEK 194

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	353
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.9
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.83
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.83
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.82
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.81
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.8
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.79
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.78
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.77
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.74
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.74
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.73
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.71
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.71
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.71
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.7
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.69
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.67
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.67
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.66
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.66
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.64
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.59
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.57
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.55
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.53
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.51
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.5
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.48
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.48
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.48
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.47
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.45
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.45
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.43
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.43
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.42
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.41
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.41
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.37
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.35
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.33
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.32
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.31
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.3
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.29
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.26
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.23
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.16
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.09
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.08
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.04
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.99
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.91
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.88
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.83
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.81
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.81
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.74
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.69
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.68
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.67
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.63
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.59
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.55
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.54
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.46
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.42
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.33
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.22
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.19
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.19
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.17
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.15
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.12
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.12
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.12
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.11
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.11
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.04
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.99
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.99
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.93
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.87
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.83
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.82
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.76
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.74
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.59
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.58
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.46
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.42
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.34
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.33
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.33
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.2
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.09
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.99
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.95
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.52
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.43
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.4
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.36
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.21
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.02
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.98
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.75
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	95.75
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.53
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.41
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.09
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.65
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.45
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.73
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.22
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.14
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.53
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.25
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.05
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.01
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	91.66
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.19
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	90.6
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.45
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	89.93
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	89.64
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	89.52
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.41
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	89.39
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.84
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	86.57
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	85.92
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	85.52
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	84.24
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	82.6
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	81.59
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	81.2
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	80.66

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.5e-24  Score=189.51  Aligned_cols=127  Identities=19%  Similarity=0.301  Sum_probs=104.0

Q ss_pred             HHHHHhhcccccccc---ccChHHHHHHHhCCCCCCEEEEECCccccccccCCCcEEEEEeCCHHHHHHHHHcCCeEEEe
Q 018606           51 HRVYDAIAPHFSSTR---FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVA  127 (353)
Q Consensus        51 ~~~yd~~a~~y~~~~---~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~  127 (353)
                      .++|++++..|+...   ...+......+..+.++++|||||||+|.++...  ..++|+|+|+.|++.|+++++.++++
T Consensus         3 ~~~f~~~a~~Yd~w~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~--~~~~giD~s~~~~~~a~~~~~~~~~~   80 (208)
T d1vlma_           3 WHIFERFVNEYERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPL--KIKIGVEPSERMAEIARKRGVFVLKG   80 (208)
T ss_dssp             THHHHHTHHHHHHHHHHTHHHHHHHHHHHHHHCCSSCEEEETCTTSTTHHHH--TCCEEEESCHHHHHHHHHTTCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCCeEEEECCCCccccccc--ceEEEEeCChhhcccccccccccccc
Confidence            357777777776421   1112333444555567779999999999987543  24689999999999999999999999


Q ss_pred             eCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          128 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       128 D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      |+.++++++++||+|++..+|+|+++   +..+|+++.++|+|||.+++.++...
T Consensus        81 d~~~l~~~~~~fD~I~~~~~l~h~~d---~~~~l~~~~~~L~pgG~l~i~~~~~~  132 (208)
T d1vlma_          81 TAENLPLKDESFDFALMVTTICFVDD---PERALKEAYRILKKGGYLIVGIVDRE  132 (208)
T ss_dssp             BTTBCCSCTTCEEEEEEESCGGGSSC---HHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             cccccccccccccccccccccccccc---cccchhhhhhcCCCCceEEEEecCCc
Confidence            99999999999999999999999988   67899999999999999999987643

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=8.2e-21  Score=169.89  Aligned_cols=128  Identities=27%  Similarity=0.394  Sum_probs=103.1

Q ss_pred             HHHHHhhcccccccc----ccChHHHHHH-H-hCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHcC-
Q 018606           51 HRVYDAIAPHFSSTR----FAKWPKVATF-L-NSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRG-  121 (353)
Q Consensus        51 ~~~yd~~a~~y~~~~----~~~~~~~~~~-l-~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~~-  121 (353)
                      .++|+++|..|+...    +..+...... + ..++++.+|||||||+|.++..  ..+.+|+|+|+|+.|++.|++++ 
T Consensus         6 ~~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~   85 (246)
T d2avna1           6 WEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV   85 (246)
T ss_dssp             HHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccc
Confidence            467888888776432    2223333322 2 2466788999999999998753  56789999999999999999985 


Q ss_pred             CeEEEeeCCCCCCCCCCccEEEec-hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          122 HEVLVADAVNLPYRSDFGDAAISI-AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       122 i~~~~~D~~~l~~~~~~fD~Vi~~-~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ..++.+|+.++++++++||+|++. .++||+++   +..+|+++.|+|||||.+++++++.
T Consensus        86 ~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d---~~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1          86 KNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN---KDKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             SCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC---HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             cccccccccccccccccccceeeecchhhhhhh---HHHHHHHHHhhcCcCcEEEEEECCH
Confidence            468899999999999999999986 58999998   6789999999999999999998653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=4.8e-21  Score=169.25  Aligned_cols=112  Identities=24%  Similarity=0.323  Sum_probs=96.0

Q ss_pred             hHHHHHHHh-CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCc
Q 018606           69 WPKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFG  139 (353)
Q Consensus        69 ~~~~~~~l~-~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~f  139 (353)
                      +..+..++. .++++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++      .+.++.+|+.++++++++|
T Consensus        24 ~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~f  103 (226)
T d1ve3a1          24 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTF  103 (226)
T ss_dssp             HHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCE
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCc
Confidence            444555553 578889999999999998642  5578999999999999999876      4788999999999999999


Q ss_pred             cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          140 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       140 D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      |+|+|..+++|+++.+ +.++|+++.++|||||+++|.++..
T Consensus       104 D~I~~~~~l~~~~~~d-~~~~l~~i~~~LkpgG~lii~~~~~  144 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLE-LNQVFKEVRRVLKPSGKFIMYFTDL  144 (226)
T ss_dssp             EEEEEESCGGGCCHHH-HHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             eEEEEecchhhCChhH-HHHHHHHHHHHcCcCcEEEEEEcCc
Confidence            9999999999997544 7889999999999999999987753

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=2.2e-20  Score=167.20  Aligned_cols=103  Identities=22%  Similarity=0.257  Sum_probs=92.3

Q ss_pred             hCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           77 NSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      ..++||.+|||||||+|.++..  ..+.+|+|+|+|+.|++.|+++       ++.++++|+.++|+++++||+|+|..+
T Consensus        12 ~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~   91 (234)
T d1xxla_          12 AECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA   91 (234)
T ss_dssp             HTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             hCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeece
Confidence            4688999999999999998642  3457999999999999999876       578999999999999999999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ++|+++   +..+|+++.|+|||||++++..+...
T Consensus        92 l~~~~d---~~~~l~~~~r~LkpgG~~~~~~~~~~  123 (234)
T d1xxla_          92 AHHFSD---VRKAVREVARVLKQDGRFLLVDHYAP  123 (234)
T ss_dssp             GGGCSC---HHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             eecccC---HHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence            999998   78999999999999999999876543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.81  E-value=2.4e-20  Score=165.85  Aligned_cols=109  Identities=21%  Similarity=0.271  Sum_probs=93.6

Q ss_pred             hHHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCc
Q 018606           69 WPKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFG  139 (353)
Q Consensus        69 ~~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~f  139 (353)
                      +.++++. ..+.++.+|||||||+|.++..  ..+.+|+|+|+|+.|++.|+++       +++|+++|+..+|+++++|
T Consensus         4 ~~~ll~~-~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f   82 (231)
T d1vl5a_           4 LAKLMQI-AALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF   82 (231)
T ss_dssp             HHHHHHH-HTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred             HHHHHHh-cCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence            3444554 3678899999999999997542  4457999999999999999875       5789999999999999999


Q ss_pred             cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          140 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       140 D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      |+|+|..++||+++   +..+|+++.|+|||||+++|..+..
T Consensus        83 D~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          83 HIVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             EEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             ccccccccccccCC---HHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99999999999998   6789999999999999999987654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=4e-20  Score=166.50  Aligned_cols=100  Identities=17%  Similarity=0.269  Sum_probs=85.0

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEec-hhhh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISI-AVLH  149 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~-~vl~  149 (353)
                      ..++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++      ++++.++|+++++++ +.||+|+|. .+++
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~  117 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM  117 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred             CCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence            34567999999999998642  4567999999999999999987      589999999999986 589999996 5788


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      |+.. +.+..+|+++.++|||||++++...+
T Consensus       118 ~~~~-~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         118 YFDE-EDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             GSCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCCh-HHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            8754 44789999999999999999997644

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.79  E-value=1.1e-19  Score=161.75  Aligned_cols=101  Identities=19%  Similarity=0.271  Sum_probs=83.4

Q ss_pred             CCCCCCEEEEECCccccccc----c--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      .++++.+|||||||+|..+.    .  .++.+|+|+|+|+.|++.|+++        .+.+..+|+..++  ...+|+|+
T Consensus        36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~  113 (225)
T d1im8a_          36 FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVI  113 (225)
T ss_dssp             HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEE
T ss_pred             hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeE
Confidence            47889999999999998642    2  4788999999999999999986        2355566665554  56789999


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +..++||++..+ +..+|++++|+|||||.+++..+..
T Consensus       114 ~~~~l~~~~~~d-~~~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         114 LNFTLQFLPPED-RIALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             EESCGGGSCGGG-HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EeeeccccChhh-HHHHHHHHHHhCCCCceeecccccc
Confidence            999999997544 7899999999999999999987654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.78  E-value=3e-19  Score=160.84  Aligned_cols=101  Identities=15%  Similarity=0.122  Sum_probs=88.2

Q ss_pred             CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEec-hhhhh
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISI-AVLHH  150 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~-~vl~h  150 (353)
                      .++.+|||||||+|.++..  ..+..|+|+|+|+.|++.|+++      +++++++|+..+++ +++||+|+|. .+++|
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~  114 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGG
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeeec
Confidence            4567999999999998652  4567999999999999999886      58999999999887 4689999986 68999


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +.+.+++..+|++++++|+|||.|++.++..
T Consensus       115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  145 (246)
T d1y8ca_         115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence            9988888999999999999999999987654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.77  E-value=2.5e-19  Score=164.83  Aligned_cols=103  Identities=21%  Similarity=0.165  Sum_probs=91.9

Q ss_pred             CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .++++.+|||||||+|.++..   ..++.|+|+|+|+.|++.|+++        +++++++|+.++|+++++||+|++..
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~  143 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  143 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence            578999999999999987532   3467999999999999999876        57899999999999999999999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +++|+++   +..+|+++.|+|||||++++..+....
T Consensus       144 ~l~h~~d---~~~~l~~~~~~LkpgG~l~~~~~~~~~  177 (282)
T d2o57a1         144 AFLHSPD---KLKVFQECARVLKPRGVMAITDPMKED  177 (282)
T ss_dssp             CGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             hhhhccC---HHHHHHHHHHhcCCCcEEEEEEeecCC
Confidence            9999998   678999999999999999999876543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.74  E-value=3.7e-18  Score=148.82  Aligned_cols=108  Identities=21%  Similarity=0.232  Sum_probs=89.6

Q ss_pred             HHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEE
Q 018606           72 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        72 ~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      +...+..+.+| +|||||||+|.++..  ..+.+|+|+|+|+.|++.|+++       ++.+...|+..+++ +++||+|
T Consensus        22 ~~~~~~~~~~g-rvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I   99 (198)
T d2i6ga1          22 VLAAAKVVAPG-RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFI   99 (198)
T ss_dssp             HHHHHTTSCSC-EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEE
T ss_pred             HHHHcccCCCC-cEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEE
Confidence            44445555555 999999999997642  5578999999999999998765       46788899998886 6889999


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ++..++||++..+ +..+|+++.++|+|||++++.++...
T Consensus       100 ~~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~~~~~~~~~~  138 (198)
T d2i6ga1         100 LSTVVMMFLEAQT-IPGLIANMQRCTKPGGYNLIVAAMDT  138 (198)
T ss_dssp             EEESCGGGSCTTH-HHHHHHHHHHTEEEEEEEEEEEEBC-
T ss_pred             EEeeeeecCCHHH-HHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            9999999998755 67899999999999999999876543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-18  Score=155.10  Aligned_cols=102  Identities=15%  Similarity=0.107  Sum_probs=88.2

Q ss_pred             CCCCCEEEEECCcccccccc--CC-CcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NP-DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~-~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      ..++.+|||||||+|.++..  .. ..+|+|+|+|+.|++.|+++       +++|+++|+.++++++++||+|++..++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l  137 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI  137 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            45668999999999997642  23 34899999999999999986       3589999999999889999999999999


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ||+++++ +.++|++++++|||||.+++..+..
T Consensus       138 ~h~~~~~-~~~~l~~i~~~Lk~~G~~~i~~~~~  169 (222)
T d2ex4a1         138 GHLTDQH-LAEFLRRCKGSLRPNGIIVIKDNMA  169 (222)
T ss_dssp             GGSCHHH-HHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             ccchhhh-hhhHHHHHHHhcCCcceEEEEEccc
Confidence            9998754 5789999999999999999987543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.4e-18  Score=154.95  Aligned_cols=99  Identities=22%  Similarity=0.231  Sum_probs=87.5

Q ss_pred             CCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.||.+|||||||+|.++.   ...+++|+|+|+|+.|++.|+++        +++|+++|+..+. .+++||+|++..
T Consensus        30 ~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-~~~~fD~v~~~~  108 (245)
T d1nkva_          30 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-ANEKCDVAACVG  108 (245)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-CSSCEEEEEEES
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-ccCceeEEEEEe
Confidence            68899999999999998754   24568999999999999999886        3789999999984 578999999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +++|+.+   +..+++++.|+|||||++++....
T Consensus       109 ~~~~~~d---~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_         109 ATWIAGG---FAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             CGGGTSS---SHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             hhhccCC---HHHHHHHHHHHcCcCcEEEEEecc
Confidence            9999998   678999999999999999998643

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2e-17  Score=147.56  Aligned_cols=140  Identities=16%  Similarity=0.094  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHHhhccccccccccC-hHHHHHHHhCCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHH
Q 018606           43 PELEKKYVHRVYDAIAPHFSSTRFAK-WPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD  119 (353)
Q Consensus        43 ~~~e~~~v~~~yd~~a~~y~~~~~~~-~~~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~  119 (353)
                      ..+..+.+.+.|++-.-.|+.....+ .......+..++++.+|||+|||+|..+.  +..|+.|+|+|+|+.+|+.|++
T Consensus         6 ~~~~~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1           6 QVLTLEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             CCCCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             ccCCHHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            34556788888877544444322222 22222223356788999999999999764  3678899999999999999886


Q ss_pred             c------------------------CCeEEEeeCCCCC-CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEE
Q 018606          120 R------------------------GHEVLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV  174 (353)
Q Consensus       120 ~------------------------~i~~~~~D~~~l~-~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~l  174 (353)
                      +                        +++++++|+..++ ...+.||+|+...+++|++... +..+++++.++|||||++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~-r~~~~~~~~~~LkpgG~~  164 (229)
T d2bzga1          86 EQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD-RKCYADTMFSLLGKKFQY  164 (229)
T ss_dssp             HTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGG-HHHHHHHHHHTEEEEEEE
T ss_pred             HhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchh-hHHHHHHHHhhcCCcceE
Confidence            4                        3578889988875 5578999999999999998655 789999999999999999


Q ss_pred             EEEEcCCCc
Q 018606          175 LITVWAVEQ  183 (353)
Q Consensus       175 li~~~~~~~  183 (353)
                      ++.++...+
T Consensus       165 ~l~~~~~~~  173 (229)
T d2bzga1         165 LLCVLSYDP  173 (229)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEcccCC
Confidence            988876544

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.71  E-value=8.3e-18  Score=149.55  Aligned_cols=99  Identities=12%  Similarity=0.100  Sum_probs=86.8

Q ss_pred             CCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606           80 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE  154 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~  154 (353)
                      ..+.+|||||||+|.++..  ..+.+|+|+|+|+.|++.|+++   ++.++.+|+..+++ +++||+|++..+|+|+.+ 
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d-   96 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDD-   96 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSS-
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecCC-
Confidence            3456899999999998753  4467999999999999999987   68999999998876 578999999999999998 


Q ss_pred             hHHHHHHHHHH-hccccCcEEEEEEcCCC
Q 018606          155 SRRKKAIEELV-RVVKKGSLVLITVWAVE  182 (353)
Q Consensus       155 e~~~~~l~el~-rvLkpgG~lli~~~~~~  182 (353)
                        +..+|.++. ++|+|||.+++.+++..
T Consensus        97 --~~~~l~~i~~~~Lk~gG~l~i~~pn~~  123 (225)
T d2p7ia1          97 --PVALLKRINDDWLAEGGRLFLVCPNAN  123 (225)
T ss_dssp             --HHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred             --HHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence              678999998 89999999999987643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.5e-17  Score=148.32  Aligned_cols=134  Identities=15%  Similarity=0.144  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhhccccccccccCh--HHHHHHHh-CCCCCCEEEEECCcccccccc--CCCc-EEEEEeCCHHHHHHHHHc
Q 018606           47 KKYVHRVYDAIAPHFSSTRFAKW--PKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR  120 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~~~~~~--~~~~~~l~-~l~~~~~VLDvGCG~G~~~~~--~~~~-~v~gvD~S~~~l~~a~~~  120 (353)
                      .+|+..+|......+.......|  +.+.+.+. ...++.+|||||||+|.+...  ..+. .|+|+|+|+.|++.|+++
T Consensus        14 ~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~   93 (257)
T d2a14a1          14 RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKW   93 (257)
T ss_dssp             HHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHH
Confidence            45666666655544433222222  22333332 345678999999999987532  3444 799999999999999875


Q ss_pred             ----CCe---------------------------------EEEe----eCCCCCCCCCCccEEEechhhhhcCC-hhHHH
Q 018606          121 ----GHE---------------------------------VLVA----DAVNLPYRSDFGDAAISIAVLHHLST-ESRRK  158 (353)
Q Consensus       121 ----~i~---------------------------------~~~~----D~~~l~~~~~~fD~Vi~~~vl~h~~~-~e~~~  158 (353)
                          ...                                 ....    +....++..++||+|++..+|||+.. .+.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~  173 (257)
T d2a14a1          94 LKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR  173 (257)
T ss_dssp             HHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHH
T ss_pred             HhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHH
Confidence                111                                 1111    22224577889999999999999974 33477


Q ss_pred             HHHHHHHhccccCcEEEEEEcC
Q 018606          159 KAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       159 ~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .+++++.++|||||.+++..+.
T Consensus       174 ~~l~~i~~~LkpGG~li~~~~~  195 (257)
T d2a14a1         174 AALCNLASLLKPGGHLVTTVTL  195 (257)
T ss_dssp             HHHHHHHTTEEEEEEEEEEEES
T ss_pred             HHHHHHHhccCCCcEEEEEEec
Confidence            8999999999999999998764

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.70  E-value=1.8e-17  Score=149.91  Aligned_cols=104  Identities=23%  Similarity=0.161  Sum_probs=87.3

Q ss_pred             CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCC-CCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPY-RSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~-~~~~fD~Vi~~  145 (353)
                      ..+++.+|||||||+|..+..   .....|+|+|+|+.|++.|+++        ++.+.++|+...++ ..++||+|+|.
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence            467889999999999987642   3345899999999999999876        36789999987775 46789999999


Q ss_pred             hhhhhcC-ChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          146 AVLHHLS-TESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       146 ~vl~h~~-~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .++||+. +.+....++.++.++|||||+++++++..
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~  137 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  137 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence            9999974 44557789999999999999999988763

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.69  E-value=1.3e-17  Score=143.50  Aligned_cols=105  Identities=18%  Similarity=0.276  Sum_probs=88.7

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------------------CCeEEEeeCCCCC-CC
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------------------GHEVLVADAVNLP-YR  135 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------------------~i~~~~~D~~~l~-~~  135 (353)
                      .++|+++|||+|||+|..+..  ..|+.|+|+|+|+.|++.|+++                   .+.++++|+..++ ..
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~   96 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   96 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence            578899999999999997642  4688999999999999999985                   2478889988876 33


Q ss_pred             CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          136 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       136 ~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ...||+|++..+++|+.+.. +..+++++.++|||||.+++..+....
T Consensus        97 ~~~~D~i~~~~~l~~l~~~~-~~~~~~~i~~~LkpgG~l~l~~~~~~~  143 (201)
T d1pjza_          97 IGHCAAFYDRAAMIALPADM-RERYVQHLEALMPQACSGLLITLEYDQ  143 (201)
T ss_dssp             HHSEEEEEEESCGGGSCHHH-HHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred             ccceeEEEEEeeeEecchhh-hHHHHHHHHHhcCCCcEEEEEEccccc
Confidence            46899999999999998654 678999999999999999888765433

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=3.7e-16  Score=144.10  Aligned_cols=102  Identities=23%  Similarity=0.295  Sum_probs=79.1

Q ss_pred             CCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCC---CCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP---YRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~---~~~~~fD~Vi  143 (353)
                      .++.+|||||||+|.++.  ...+..|+|+|+|+.||+.|+++           ...+..+++..++   ...+.||+|+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~  134 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  134 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence            456799999999999864  24578999999999999999875           2345555554321   1256899999


Q ss_pred             ech-hhhhcCCh----hHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          144 SIA-VLHHLSTE----SRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       144 ~~~-vl~h~~~~----e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      |.+ +|+|+++.    +++..+|+++.++|||||+|++.+++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  177 (292)
T d1xvaa_         135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  177 (292)
T ss_dssp             ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence            864 89998753    347789999999999999999987653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.1e-16  Score=146.11  Aligned_cols=93  Identities=34%  Similarity=0.445  Sum_probs=82.3

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      .++.+|||||||+|.++.    ..++..++|+|+|+.|++.|+++  ++.+.++|+.++|+++++||+|++..+++|   
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~---  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK---  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence            466799999999999753    36788999999999999999987  789999999999999999999999887665   


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                             ++++.|+|||||++++.+++..
T Consensus       160 -------~~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         160 -------AEELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             -------HHHHHHHEEEEEEEEEEEECTT
T ss_pred             -------HHHHHHHhCCCcEEEEEeeCCc
Confidence                   4678999999999999998753

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.66  E-value=1e-16  Score=147.41  Aligned_cols=99  Identities=25%  Similarity=0.346  Sum_probs=85.9

Q ss_pred             CCCCCCEEEEECCccccccc----c-CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~-~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+..+.+|||||||+|.++.    . ..+..|+|+|+|+.|++.|+++      +++|.++|+..++++ ++||+|++..
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~  102 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHA  102 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEES
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCceEEEEeh
Confidence            45677899999999998742    2 3467999999999999999876      468899999999885 5799999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++||+++   +..+|+++.++|||||.+++....
T Consensus       103 ~l~~~~d---~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1         103 FLLHMTT---PETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             CGGGCSS---HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hhhcCCC---HHHHHHHHHHHcCcCcEEEEEECC
Confidence            9999998   678999999999999999998754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.66  E-value=6.9e-17  Score=146.53  Aligned_cols=108  Identities=13%  Similarity=0.084  Sum_probs=90.8

Q ss_pred             HHHHHhCCC--CCCEEEEECCcccccccc--CC-CcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccE
Q 018606           72 VATFLNSLP--SGSLVLDAGCGNGKYLGL--NP-DCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDA  141 (353)
Q Consensus        72 ~~~~l~~l~--~~~~VLDvGCG~G~~~~~--~~-~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~  141 (353)
                      ...++..++  ++.+|||+|||+|.++..  .+ ...|+|+|+|+.|++.|+++     .++++++|+..+++++++||+
T Consensus        82 s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  161 (254)
T d1xtpa_          82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL  161 (254)
T ss_dssp             HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred             HHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccce
Confidence            345666554  457999999999997642  22 34899999999999999986     368899999999998999999


Q ss_pred             EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      |++..+|+|+++++ ..++|+++.++|+|||.++|....
T Consensus       162 I~~~~vl~hl~d~d-~~~~l~~~~~~LkpgG~iii~e~~  199 (254)
T d1xtpa_         162 IVIQWTAIYLTDAD-FVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             EEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EEeeccccccchhh-hHHHHHHHHHhcCCCcEEEEEecC
Confidence            99999999998755 678999999999999999997654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.6e-15  Score=136.53  Aligned_cols=133  Identities=17%  Similarity=0.146  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhhccccccc-cccCh--HHHHHHHh-CCCCCCEEEEECCccccccc--cCC-CcEEEEEeCCHHHHHHHHH
Q 018606           47 KKYVHRVYDAIAPHFSST-RFAKW--PKVATFLN-SLPSGSLVLDAGCGNGKYLG--LNP-DCFFVGCDISPSLIKICVD  119 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~~-~~~~~--~~~~~~l~-~l~~~~~VLDvGCG~G~~~~--~~~-~~~v~gvD~S~~~l~~a~~  119 (353)
                      .+|+..+|......+... ....|  +.+.+.+. ....|.+|||||||+|.+..  ..+ ..+|+|+|+|+.|++.+++
T Consensus        16 ~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~   95 (263)
T d2g72a1          16 RAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGR   95 (263)
T ss_dssp             HHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHH
Confidence            356777775444433221 11122  22223222 34567899999999998743  223 3489999999999999986


Q ss_pred             c------C-------------------------------CeEEEeeCCC------CCCCCCCccEEEechhhhhcC-Chh
Q 018606          120 R------G-------------------------------HEVLVADAVN------LPYRSDFGDAAISIAVLHHLS-TES  155 (353)
Q Consensus       120 ~------~-------------------------------i~~~~~D~~~------l~~~~~~fD~Vi~~~vl~h~~-~~e  155 (353)
                      +      .                               ..+..+|+..      .+...+.||+|+++.+|||+. +.+
T Consensus        96 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~  175 (263)
T d2g72a1          96 WLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLA  175 (263)
T ss_dssp             HHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHH
T ss_pred             HHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHH
Confidence            4      0                               1234456543      234457899999999999996 344


Q ss_pred             HHHHHHHHHHhccccCcEEEEEEc
Q 018606          156 RRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       156 ~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ....+|+++.++|||||.|++..+
T Consensus       176 ~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         176 SFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCEEEEecc
Confidence            578999999999999999998764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=1.6e-15  Score=139.25  Aligned_cols=101  Identities=19%  Similarity=0.291  Sum_probs=83.2

Q ss_pred             CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.||.+|||||||+|.++..   ..++.|+|+|+|+.+++.|+++        .+.+...|...+   +++||.|+++.
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~  125 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIE  125 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEES
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhh
Confidence            468999999999999997642   4578999999999999999886        234555565544   47899999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +++|+.... ...+++++.++|||||+++|.+....
T Consensus       126 ~~eh~~~~~-~~~~f~~i~~~LkpgG~~~i~~i~~~  160 (280)
T d2fk8a1         126 AFEHFGHEN-YDDFFKRCFNIMPADGRMTVQSSVSY  160 (280)
T ss_dssp             CGGGTCGGG-HHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             HHHHhhhhh-HHHHHHHHHhccCCCceEEEEEeecc
Confidence            999998643 67899999999999999999875543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=2.9e-15  Score=138.25  Aligned_cols=103  Identities=17%  Similarity=0.257  Sum_probs=84.8

Q ss_pred             CCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.+|.+|||||||.|.++.   ...++.|+|+++|+..++.|+++        .+.+...|.   ++.+++||.|+|+.
T Consensus        58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~~~~~~fD~i~sie  134 (291)
T d1kpia_          58 NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEFDEPVDRIVSLG  134 (291)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGCCCCCSEEEEES
T ss_pred             CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---cccccccceEeech
Confidence            57899999999999998764   24578999999999999998876        234555554   45578999999999


Q ss_pred             hhhhcCCh------hHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          147 VLHHLSTE------SRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       147 vl~h~~~~------e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      +++|+.+.      +....+++++.++|||||++++.++....
T Consensus       135 ~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~  177 (291)
T d1kpia_         135 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD  177 (291)
T ss_dssp             CGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCC
T ss_pred             hHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccC
Confidence            99999863      23678999999999999999999887543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=5.5e-15  Score=135.92  Aligned_cols=101  Identities=22%  Similarity=0.271  Sum_probs=86.6

Q ss_pred             CCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.||.+|||||||.|.++.   ...+++|+|+++|+..++.|+++        .+++..+|...++   ++||.|+++.
T Consensus        59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~  135 (285)
T d1kpga_          59 GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIG  135 (285)
T ss_dssp             TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred             CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeeh
Confidence            57899999999999998753   24578999999999999999886        4678888887764   6899999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +++|+.... ...+++++.|+|||||++++.++...
T Consensus       136 ~~eh~~~~~-~~~~~~~~~r~LkpgG~~~l~~i~~~  170 (285)
T d1kpga_         136 AFEHFGHER-YDAFFSLAHRLLPADGVMLLHTITGL  170 (285)
T ss_dssp             CGGGTCTTT-HHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             hhhhcCchh-HHHHHHHHHhhcCCCCcEEEEEEecc
Confidence            999997643 57899999999999999999887643

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.3e-15  Score=136.57  Aligned_cols=101  Identities=13%  Similarity=-0.054  Sum_probs=78.3

Q ss_pred             CCCCEEEEECCccccccc--------cC--CCcEEEEEeCCHHHHHHHHHc-----CC---e--EEEeeCC------CCC
Q 018606           80 PSGSLVLDAGCGNGKYLG--------LN--PDCFFVGCDISPSLIKICVDR-----GH---E--VLVADAV------NLP  133 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~--------~~--~~~~v~gvD~S~~~l~~a~~~-----~i---~--~~~~D~~------~l~  133 (353)
                      ++..+|||||||+|.++.        ..  ....++|+|+|+.|++.|+++     ++   .  +...++.      ..+
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK  118 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence            344589999999998632        12  235789999999999999886     22   2  2222222      235


Q ss_pred             CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       134 ~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      .++++||+|++..+|||+++   +..+|+++.++|+|||.+++..+....
T Consensus       119 ~~~~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~i~~~~~~~  165 (280)
T d1jqea_         119 KELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIVVSGSS  165 (280)
T ss_dssp             SSCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred             CCCCceeEEEEccceecCCC---HHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence            66899999999999999998   689999999999999999999886543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.51  E-value=1e-14  Score=132.46  Aligned_cols=102  Identities=17%  Similarity=0.253  Sum_probs=89.5

Q ss_pred             HhCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCCcc
Q 018606           76 LNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGD  140 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l~~~~~~fD  140 (353)
                      +..+.||++|||+|||+|.++.     ..+.++|+++|+++.+++.|+++          ++.+.++|+...++++++||
T Consensus        91 ~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD  170 (264)
T d1i9ga_          91 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD  170 (264)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred             HhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcc
Confidence            3468999999999999999753     26888999999999999999874          57889999999999999999


Q ss_pred             EEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccc
Q 018606          141 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED  185 (353)
Q Consensus       141 ~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~  185 (353)
                      +|++     ++++   +..++.++.++|||||+++++.++.+|..
T Consensus       171 aV~l-----dlp~---P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~  207 (264)
T d1i9ga_         171 RAVL-----DMLA---PWEVLDAVSRLLVAGGVLMVYVATVTQLS  207 (264)
T ss_dssp             EEEE-----ESSC---GGGGHHHHHHHEEEEEEEEEEESSHHHHH
T ss_pred             eEEE-----ecCC---HHHHHHHHHhccCCCCEEEEEeCccChHH
Confidence            9986     5777   57899999999999999999999988753

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.50  E-value=2.2e-14  Score=129.43  Aligned_cols=100  Identities=17%  Similarity=0.190  Sum_probs=82.5

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      .+....+|||||||+|.++.    ..|+..++++|+ +.+++.++++        +++++.+|+... . ...||+|++.
T Consensus        77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~D~v~~~  153 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L-PRKADAIILS  153 (253)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-SSCEEEEEEE
T ss_pred             CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-c-ccchhheeec
Confidence            35566899999999999753    478999999998 5688888765        478999998753 2 3569999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .+|||+++++ ...+|++++++|||||+++|.....
T Consensus       154 ~vlh~~~d~~-~~~~L~~~~~~LkPGG~l~i~e~~~  188 (253)
T d1tw3a2         154 FVLLNWPDHD-AVRILTRCAEALEPGGRILIHERDD  188 (253)
T ss_dssp             SCGGGSCHHH-HHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred             cccccCCchh-hHHHHHHHHHhcCCCcEEEEEeccC
Confidence            9999998754 5789999999999999999987643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.48  E-value=2e-14  Score=123.88  Aligned_cols=101  Identities=16%  Similarity=0.139  Sum_probs=84.5

Q ss_pred             hCCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      ..+.++.+|||||||+|.++.  .....+|+|+|+++.|++.|+++        +++++++|+...+.....||+|++..
T Consensus        29 l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~  108 (186)
T d1l3ia_          29 AEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG  108 (186)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred             cCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence            367899999999999998753  24566999999999999999986        56899999988877778999999987


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      ..++      ...++..+.+.|||||++++.....++
T Consensus       109 ~~~~------~~~~~~~~~~~LkpgG~lvi~~~~~e~  139 (186)
T d1l3ia_         109 SGGE------LQEILRIIKDKLKPGGRIIVTAILLET  139 (186)
T ss_dssp             CTTC------HHHHHHHHHHTEEEEEEEEEEECBHHH
T ss_pred             cccc------chHHHHHHHHHhCcCCEEEEEeecccc
Confidence            6544      356899999999999999988765443

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=2.7e-14  Score=127.34  Aligned_cols=100  Identities=15%  Similarity=0.203  Sum_probs=83.0

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCC-CCCCCccEEEechh
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP-YRSDFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~-~~~~~fD~Vi~~~v  147 (353)
                      .+.||++|||||||+|..+.    ..++..|+|+|+|+.|++.++++     ++.++.+|....+ +.+..+|++++...
T Consensus        71 ~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~  150 (230)
T d1g8sa_          71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecc
Confidence            36789999999999998653    35778999999999999999886     5677888877643 56678888888887


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++|...   +..++.++.+.|||||.+++..+.
T Consensus       151 ~~~~~~---~~~~l~~~~r~LKpgG~~~i~~k~  180 (230)
T d1g8sa_         151 VAQPNQ---AEILIKNAKWFLKKGGYGMIAIKA  180 (230)
T ss_dssp             CCSTTH---HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             ccchHH---HHHHHHHHHHhcccCceEEEEeec
Confidence            777765   678999999999999999998754

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.48  E-value=1.9e-14  Score=126.55  Aligned_cols=100  Identities=15%  Similarity=0.053  Sum_probs=78.0

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEe-chh
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAIS-IAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~-~~v  147 (353)
                      .++||++|||||||+|..+.    ..+...|+|+|+|+.|++.|+++     ++.++.+|+...+.....+|.+.. ...
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~  132 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD  132 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEec
Confidence            47899999999999998643    35667999999999999988775     788999998886654544444432 234


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +.|...   ...++.++.++|||||.+++.+++
T Consensus       133 ~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~  162 (209)
T d1nt2a_         133 IAQKNQ---IEILKANAEFFLKEKGEVVIMVKA  162 (209)
T ss_dssp             CCSTTH---HHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccChhh---HHHHHHHHHHHhccCCeEEEEEEc
Confidence            444443   678999999999999999998754

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.47  E-value=5.2e-14  Score=121.91  Aligned_cols=100  Identities=17%  Similarity=0.160  Sum_probs=81.2

Q ss_pred             CCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      ...++.+|||+|||+|.++.  ...+..|+|+|+|+.+++.|+++         .+++..+|+.. ++++++||+|++..
T Consensus        49 ~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~  127 (194)
T d1dusa_          49 VVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP  127 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC
T ss_pred             CcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcc
Confidence            35678899999999998743  23456899999999999999875         36788899877 56788999999998


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++|+..+.  ...++.++.++|+|||.+++....
T Consensus       128 p~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~  159 (194)
T d1dusa_         128 PIRAGKEV--LHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             CSTTCHHH--HHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             cEEecchh--hhhHHHHHHHhcCcCcEEEEEEeC
Confidence            88765432  467899999999999999886543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.3e-14  Score=129.11  Aligned_cols=127  Identities=13%  Similarity=0.078  Sum_probs=89.8

Q ss_pred             HHHHHHHhhcccccccc----------ccChH-HHHHHHh--CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHH
Q 018606           49 YVHRVYDAIAPHFSSTR----------FAKWP-KVATFLN--SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPS  112 (353)
Q Consensus        49 ~v~~~yd~~a~~y~~~~----------~~~~~-~~~~~l~--~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~  112 (353)
                      .+...|+..+..|+...          ...|. .+...+.  ...+|.+|||||||+|..+..   ....+++|+|+|+.
T Consensus         8 ~~~~~w~~~~~~yd~~~~~l~~~~~~~m~~w~~~~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~   87 (229)
T d1zx0a1           8 NCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDG   87 (229)
T ss_dssp             BCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHH
T ss_pred             cchhhhhhhhhcCCcHHHHHHHhchHHHHHHHHHHHHHHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHH
Confidence            34566887777776421          12242 2222221  136788999999999987642   33468999999999


Q ss_pred             HHHHHHHc------CCeEEEeeCCC--CCCCCCCccEEE-----echhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          113 LIKICVDR------GHEVLVADAVN--LPYRSDFGDAAI-----SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       113 ~l~~a~~~------~i~~~~~D~~~--l~~~~~~fD~Vi-----~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      |++.|+++      ++.++..|+..  .++++++||.|+     +...++|+.+   +..+++++.|+|||||+|++..
T Consensus        88 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~---~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1          88 VFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQ---FNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             HHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHH---HHHHHHTHHHHEEEEEEEEECC
T ss_pred             HHHHHHHHhhhcccccccccccccccccccccccccceeecccccccccccccC---HHHHHHHHHHHcCCCcEEEEEe
Confidence            99999987      24556666543  356778898887     4667777766   6789999999999999987643

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=2.4e-14  Score=129.44  Aligned_cols=96  Identities=18%  Similarity=0.116  Sum_probs=78.0

Q ss_pred             CCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      ...+|.+|||+|||+|.++.  ...+.+|+|+|+|+.|++.|+++      +.+++++|+.. .++.++||+|+++...+
T Consensus       117 ~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~  195 (254)
T d2nxca1         117 HLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             HCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred             hcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccccc
Confidence            46789999999999999753  24567999999999999999976      46788888765 34568999999975544


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .      +..++.++.++|||||+++++.+.
T Consensus       196 ~------l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         196 L------HAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             H------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             c------HHHHHHHHHHhcCCCcEEEEEecc
Confidence            3      456889999999999999997553

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.43  E-value=1.6e-13  Score=124.11  Aligned_cols=98  Identities=23%  Similarity=0.219  Sum_probs=81.5

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      +....+|||||||+|.++.    ..|+.+++++|+ +.+++.++++        ++.++.+|+.. +.+ ..||+|++..
T Consensus        79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~  155 (256)
T d1qzza2          79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSF  155 (256)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEES
T ss_pred             CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccc
Confidence            4566899999999999753    488999999998 7788888765        46788888775 443 4599999999


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +|||+++.+ ...+|++++++|||||+++|..+.
T Consensus       156 vLh~~~d~~-~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         156 VLLNWSDED-ALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             CGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cccccCcHH-HHHHHHHHHhhcCCcceeEEEEec
Confidence            999998654 678999999999999999998764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=1.2e-13  Score=121.68  Aligned_cols=93  Identities=16%  Similarity=0.180  Sum_probs=79.2

Q ss_pred             CCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      .+.+|.+|||||||+|.++.     ..+...|+++|+++.+++.|+++       ++.++++|+...+..++.||+|++.
T Consensus        72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~  151 (213)
T d1dl5a1          72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVT  151 (213)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhh
Confidence            57899999999999999753     25678999999999999999986       5678899998877778899999999


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ++++++++         ++.++|||||++++.+.
T Consensus       152 ~~~~~~p~---------~l~~~LkpGG~lv~pv~  176 (213)
T d1dl5a1         152 VGVDEVPE---------TWFTQLKEGGRVIVPIN  176 (213)
T ss_dssp             SBBSCCCH---------HHHHHEEEEEEEEEEBC
T ss_pred             ccHHHhHH---------HHHHhcCCCcEEEEEEC
Confidence            99998863         35678999999988653

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.42  E-value=8.9e-14  Score=121.65  Aligned_cols=98  Identities=17%  Similarity=0.291  Sum_probs=81.3

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEEEechh
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAV  147 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~Vi~~~v  147 (353)
                      ++..|||||||+|.++.    ..|+..++|+|++..++..|.++       |+.++.+|+..+.  ++++++|.|++...
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence            34689999999999753    48999999999999999888765       6899999998875  78899999999887


Q ss_pred             hhhcCChhH-----HHHHHHHHHhccccCcEEEEEE
Q 018606          148 LHHLSTESR-----RKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       148 l~h~~~~e~-----~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ..|......     ...+|.++.|+|||||.|+|.+
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            776553210     1479999999999999998875

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.41  E-value=1e-13  Score=124.80  Aligned_cols=99  Identities=18%  Similarity=0.276  Sum_probs=83.9

Q ss_pred             hCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      ..+.||++|||+|||+|.++.     ..+..+|+++|+++.+++.|+++        ++++..+|+.+. ++++.||+|+
T Consensus        81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~  159 (250)
T d1yb2a1          81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVI  159 (250)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEE
T ss_pred             cCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeee
Confidence            357899999999999998642     26788999999999999999986        578899998876 4578999998


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      +     ++++   +..+|.++.++|||||+++++.++.+|.
T Consensus       160 l-----d~p~---p~~~l~~~~~~LKpGG~lv~~~P~i~Qv  192 (250)
T d1yb2a1         160 A-----DIPD---PWNHVQKIASMMKPGSVATFYLPNFDQS  192 (250)
T ss_dssp             E-----CCSC---GGGSHHHHHHTEEEEEEEEEEESSHHHH
T ss_pred             e-----cCCc---hHHHHHHHHHhcCCCceEEEEeCCcChH
Confidence            6     3566   5678999999999999999999887764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.9e-13  Score=120.07  Aligned_cols=101  Identities=21%  Similarity=0.195  Sum_probs=82.4

Q ss_pred             HHHHHHh-CCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCC
Q 018606           71 KVATFLN-SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL  132 (353)
Q Consensus        71 ~~~~~l~-~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l  132 (353)
                      .+.+.|. .+.+|.+|||||||+|.++.     ..+...|+++|+++.+++.|+++            ++.+..+|+...
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~  144 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  144 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence            3444443 57899999999999998643     25678999999999999999765            457889999988


Q ss_pred             CCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          133 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       133 ~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +...+.||+|++.+++++++.         ++.+.|||||+|++.+..
T Consensus       145 ~~~~~~fD~I~~~~~~~~ip~---------~l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         145 YAEEAPYDAIHVGAAAPVVPQ---------ALIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             CGGGCCEEEEEECSBBSSCCH---------HHHHTEEEEEEEEEEESC
T ss_pred             cchhhhhhhhhhhcchhhcCH---------HHHhhcCCCcEEEEEEcc
Confidence            888889999999999988763         367899999999997643

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.9e-13  Score=124.60  Aligned_cols=106  Identities=13%  Similarity=0.169  Sum_probs=81.5

Q ss_pred             ChHHHHHHHh--CCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----------------CCeEE
Q 018606           68 KWPKVATFLN--SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----------------GHEVL  125 (353)
Q Consensus        68 ~~~~~~~~l~--~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----------------~i~~~  125 (353)
                      .+..+..++.  .+.++.+|||||||+|.++.    ..+...++|+|+|+.|++.|++.                +++|+
T Consensus       136 ~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~  215 (328)
T d1nw3a_         136 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE  215 (328)
T ss_dssp             CHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEE
Confidence            3444444544  47889999999999999753    24556899999999999998763                47899


Q ss_pred             EeeCCCCCCCCCCc--cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          126 VADAVNLPYRSDFG--DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       126 ~~D~~~l~~~~~~f--D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      ++|+.++++.+..+  |+|++ ..+.|.++   +...|.++.|+|||||++++.
T Consensus       216 ~gd~~~~~~~~~~~~advi~~-~~~~f~~~---~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         216 RGDFLSEEWRERIANTSVIFV-NNFAFGPE---VDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             ECCTTSHHHHHHHHHCSEEEE-CCTTTCHH---HHHHHHHHHTTCCTTCEEEES
T ss_pred             ECcccccccccccCcceEEEE-cceecchH---HHHHHHHHHHhCCCCcEEEEe
Confidence            99999998777665  45555 44555544   678999999999999998764

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=3.5e-13  Score=126.02  Aligned_cols=96  Identities=22%  Similarity=0.237  Sum_probs=78.8

Q ss_pred             CCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           79 LPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      ..+|.+|||||||+|.++.  +..| ..|+|+|.|+ ++..|++.        .+.++.+|+..+++++.+||+|++..+
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~  114 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEec
Confidence            3468999999999998743  2334 4999999996 55666553        478999999999999999999999888


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      .+++........++..+.|+|||||+++
T Consensus       115 ~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         115 GYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            8777766557889999999999999986

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.33  E-value=1.6e-12  Score=113.50  Aligned_cols=97  Identities=18%  Similarity=0.328  Sum_probs=78.1

Q ss_pred             CCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCCccEEEechhh
Q 018606           82 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAVL  148 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~--~~~~~fD~Vi~~~vl  148 (353)
                      ...|||||||+|.++.    ..|+..++|+|+++.++..|.++       ++.++.+|+..+.  +++.++|.|++....
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence            4589999999999753    48999999999999999888665       6899999998865  778899999887654


Q ss_pred             hhcCChhH-----HHHHHHHHHhccccCcEEEEEE
Q 018606          149 HHLSTESR-----RKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       149 ~h~~~~e~-----~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .|......     ...+|+.+.++|||||.|.|.+
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            43332110     1578999999999999998875

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=121.48  Aligned_cols=111  Identities=19%  Similarity=0.118  Sum_probs=84.8

Q ss_pred             cccChHHHHHHHhCCCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC
Q 018606           65 RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY  134 (353)
Q Consensus        65 ~~~~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~  134 (353)
                      |...+...+.....+.++.+|||||||+|.+..  +..| .+|+|+|.|+.|+..++..       .+.++.+|+.++++
T Consensus        19 r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~   98 (311)
T d2fyta1          19 RTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHL   98 (311)
T ss_dssp             HHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCC
T ss_pred             HHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcC
Confidence            334444433333345678999999999999743  2334 4899999999987544332       47899999999999


Q ss_pred             CCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEE
Q 018606          135 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       135 ~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      +..+||+|++....+++.....+..++....++|||||+++
T Consensus        99 ~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          99 PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            88999999998888887766556788888899999999987

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2e-12  Score=120.50  Aligned_cols=103  Identities=15%  Similarity=0.182  Sum_probs=82.2

Q ss_pred             HhCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc------------------CCeEEEeeCCCC
Q 018606           76 LNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR------------------GHEVLVADAVNL  132 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~------------------~i~~~~~D~~~l  132 (353)
                      +..+.||++|||+|||+|.++.     ..+.++|+++|+++.+++.|+++                  ++++..+|+...
T Consensus        93 ~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~  172 (324)
T d2b25a1          93 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  172 (324)
T ss_dssp             HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             HhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence            3478999999999999999753     26788999999999999999874                  468899998875


Q ss_pred             C--CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCccch
Q 018606          133 P--YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK  186 (353)
Q Consensus       133 ~--~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~~~  186 (353)
                      .  +.+..||+|+.     .+++   +..+|.++.++|||||+|+++.++.+|...
T Consensus       173 ~~~~~~~~fD~V~L-----D~p~---P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~  220 (324)
T d2b25a1         173 TEDIKSLTFDAVAL-----DMLN---PHVTLPVFYPHLKHGGVCAVYVVNITQVIE  220 (324)
T ss_dssp             C-------EEEEEE-----CSSS---TTTTHHHHGGGEEEEEEEEEEESSHHHHHH
T ss_pred             ccccCCCCcceEee-----cCcC---HHHHHHHHHHhccCCCEEEEEeCCHHHHHH
Confidence            4  45678999986     3555   457899999999999999999999887543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.30  E-value=1.5e-12  Score=118.27  Aligned_cols=99  Identities=14%  Similarity=0.169  Sum_probs=80.1

Q ss_pred             hCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      ..+.||.+|||+|||+|.++.     ..++++|+++|+++.+++.|+++        ++.+...|+.. .+....||.|+
T Consensus        99 l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~~~~D~V~  177 (266)
T d1o54a_          99 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDEKDVDALF  177 (266)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSCCSEEEEE
T ss_pred             hCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cccccceeeeE
Confidence            468999999999999998643     25788999999999999999986        34556666533 35567788876


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCcc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE  184 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~~  184 (353)
                      .     ++++   +..+|.++.++|||||+++++.++.+|.
T Consensus       178 ~-----d~p~---p~~~l~~~~~~LKpGG~lv~~~P~~~Qv  210 (266)
T d1o54a_         178 L-----DVPD---PWNYIDKCWEALKGGGRFATVCPTTNQV  210 (266)
T ss_dssp             E-----CCSC---GGGTHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred             e-----cCCC---HHHHHHHHHhhcCCCCEEEEEeCcccHH
Confidence            4     6777   5689999999999999999999887764

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=7e-13  Score=123.34  Aligned_cols=97  Identities=16%  Similarity=0.076  Sum_probs=77.7

Q ss_pred             CCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHH---c----CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           79 LPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVD---R----GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~---~----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      +.+|.+|||||||+|.+..  +..| .+|+|+|.|+.+....+.   +    ++.++.+|+..++++.++||+|++..+.
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            3478999999999998642  2334 489999999865433221   1    4789999999999988999999998887


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEE
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVL  175 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~ll  175 (353)
                      +++..+.....++..+.|+|||||+++
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            777765557889999999999999987

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=4.4e-12  Score=112.46  Aligned_cols=98  Identities=18%  Similarity=0.175  Sum_probs=77.1

Q ss_pred             CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCC---CCCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNL---PYRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l---~~~~~~fD~Vi~  144 (353)
                      .+.||++|||+|||+|.++..     .+...|+|+|+|+.|++.++++     ++..+..|....   +.....+|+|++
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~  149 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE
Confidence            367999999999999997642     5788999999999999999876     467778887653   234467788776


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .  +.|...   ...++.++.+.|||||++++..++
T Consensus       150 d--~~~~~~---~~~~l~~~~~~LkpgG~lvi~~ka  180 (227)
T d1g8aa_         150 D--VAQPTQ---AKILIDNAEVYLKRGGYGMIAVKS  180 (227)
T ss_dssp             C--CCSTTH---HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             E--ccccch---HHHHHHHHHHhcccCCeEEEEEEC
Confidence            3  333332   678999999999999999998765

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.23  E-value=3.3e-12  Score=113.00  Aligned_cols=93  Identities=18%  Similarity=0.214  Sum_probs=77.1

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      .+.++.+|||||||+|.++..  ....+|+++|+++.+++.|+++     ++.++.+|........+.||+|++.+++.+
T Consensus        67 ~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~  146 (224)
T d1vbfa_          67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT  146 (224)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred             hhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchhh
Confidence            578999999999999997642  3346999999999999999886     678999998775555688999999999888


Q ss_pred             cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          151 LSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       151 ~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ++.         .+.+.|+|||+|++.+-
T Consensus       147 ip~---------~l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         147 LLC---------KPYEQLKEGGIMILPIG  166 (224)
T ss_dssp             CCH---------HHHHTEEEEEEEEEEEC
T ss_pred             hhH---------HHHHhcCCCCEEEEEEc
Confidence            763         25578999999998653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=3.4e-11  Score=106.35  Aligned_cols=100  Identities=20%  Similarity=0.225  Sum_probs=80.9

Q ss_pred             HHHHHHh-CCCCCCEEEEECCcccccccc----------CCCcEEEEEeCCHHHHHHHHHc------------CCeEEEe
Q 018606           71 KVATFLN-SLPSGSLVLDAGCGNGKYLGL----------NPDCFFVGCDISPSLIKICVDR------------GHEVLVA  127 (353)
Q Consensus        71 ~~~~~l~-~l~~~~~VLDvGCG~G~~~~~----------~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~  127 (353)
                      ++.+.|. .+.++.+|||||||+|.++..          .++.+|+++|+++.+++.|+++            ++.+..+
T Consensus        69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~  148 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  148 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence            3444443 578999999999999997531          3456999999999999998764            6889999


Q ss_pred             eCCCCCCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          128 DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       128 D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      |......+.+.||+|++.+++.+++.         .+.+.|||||++++.+.
T Consensus       149 d~~~~~~~~~~fD~Iiv~~a~~~~p~---------~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         149 DGRKGYPPNAPYNAIHVGAAAPDTPT---------ELINQLASGGRLIVPVG  191 (223)
T ss_dssp             CGGGCCGGGCSEEEEEECSCBSSCCH---------HHHHTEEEEEEEEEEES
T ss_pred             ccccccccccceeeEEEEeechhchH---------HHHHhcCCCcEEEEEEe
Confidence            99887766789999999999887763         25689999999988765

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.09  E-value=1.8e-10  Score=99.31  Aligned_cols=97  Identities=12%  Similarity=0.086  Sum_probs=72.6

Q ss_pred             CCCCEEEEECCccccc----c----c----cCCCcEEEEEeCCHHHHHHHHHc---------------------------
Q 018606           80 PSGSLVLDAGCGNGKY----L----G----LNPDCFFVGCDISPSLIKICVDR---------------------------  120 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~----~----~----~~~~~~v~gvD~S~~~l~~a~~~---------------------------  120 (353)
                      .+.-+|+++|||+|.-    +    .    .....+|+|+|+|+.+++.|++.                           
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            3446999999999982    1    1    12346899999999999999853                           


Q ss_pred             -----------CCeEEEeeCCCC-CCCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          121 -----------GHEVLVADAVNL-PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       121 -----------~i~~~~~D~~~l-~~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                                 .+.+...+.... +...+.||+|+|.+||.++.++. ..++++.+++.|+|||.|++.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~-~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT-QEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH-HHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHH-HHHHHHHHHHHhCCCcEEEEe
Confidence                       012333333332 23457899999999999998654 688999999999999988765

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=5.5e-11  Score=113.55  Aligned_cols=127  Identities=17%  Similarity=0.217  Sum_probs=83.0

Q ss_pred             HHHHHHHHHhhcc-------ccccc---c--ccChHHHHHHHh--CCCCCCEEEEECCccccccc---c-CCCcEEEEEe
Q 018606           47 KKYVHRVYDAIAP-------HFSST---R--FAKWPKVATFLN--SLPSGSLVLDAGCGNGKYLG---L-NPDCFFVGCD  108 (353)
Q Consensus        47 ~~~v~~~yd~~a~-------~y~~~---~--~~~~~~~~~~l~--~l~~~~~VLDvGCG~G~~~~---~-~~~~~v~gvD  108 (353)
                      ....+.+|.+...       +|...   -  ...+..+..++.  .+.++.++||||||+|..+.   . .+...++|+|
T Consensus       168 ~~i~~~~y~r~v~p~~~~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GID  247 (406)
T d1u2za_         168 HDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCE  247 (406)
T ss_dssp             HHHHHHHHHHHTGGGGGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEE
T ss_pred             HHHHHHhhcccccCChHHhcccCCCCCCccccCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEe
Confidence            4556777877652       23321   1  223455555555  47899999999999999753   2 3445899999


Q ss_pred             CCHHHHHHHHHcC----------------CeE-EEeeCCCCCCCC---CCccEEEechhhhhcCChhHHHHHHHHHHhcc
Q 018606          109 ISPSLIKICVDRG----------------HEV-LVADAVNLPYRS---DFGDAAISIAVLHHLSTESRRKKAIEELVRVV  168 (353)
Q Consensus       109 ~S~~~l~~a~~~~----------------i~~-~~~D~~~l~~~~---~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvL  168 (353)
                      +|+.|++.|+++.                ..+ ..+++...+..+   ..+|+|++.. ++|.++   +..+|.++.|+|
T Consensus       248 iS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~---l~~~L~ei~r~L  323 (406)
T d1u2za_         248 IMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDED---LNKKVEKILQTA  323 (406)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHH---HHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccccccceEEEEec-ccCchH---HHHHHHHHHHhc
Confidence            9999999998751                111 233333322111   2457777654 344433   789999999999


Q ss_pred             ccCcEEEEE
Q 018606          169 KKGSLVLIT  177 (353)
Q Consensus       169 kpgG~lli~  177 (353)
                      ||||++++.
T Consensus       324 KPGGrIVs~  332 (406)
T d1u2za_         324 KVGCKIISL  332 (406)
T ss_dssp             CTTCEEEES
T ss_pred             CCCcEEEEe
Confidence            999998764

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.04  E-value=7e-11  Score=103.64  Aligned_cols=94  Identities=20%  Similarity=0.211  Sum_probs=78.5

Q ss_pred             CCCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV  147 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~v  147 (353)
                      .+.++.+|||||||+|..+..   ..+..|+++|..+.+++.|+++       ++.++.+|........+.||.|++.++
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a  154 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAG  154 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecc
Confidence            578999999999999997542   3356799999999999999986       688999999886666789999999999


Q ss_pred             hhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          148 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       148 l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +.+++.     .    +...|+|||++++.+-.
T Consensus       155 ~~~ip~-----~----l~~qL~~gGrLv~pv~~  178 (215)
T d1jg1a_         155 APKIPE-----P----LIEQLKIGGKLIIPVGS  178 (215)
T ss_dssp             BSSCCH-----H----HHHTEEEEEEEEEEECS
T ss_pred             cccCCH-----H----HHHhcCCCCEEEEEEcc
Confidence            988764     2    45679999999887643

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.99  E-value=2.2e-10  Score=102.33  Aligned_cols=98  Identities=24%  Similarity=0.285  Sum_probs=78.6

Q ss_pred             CCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           79 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      .....+|||||||+|.++.    ..|+.+++.+|+ +..++.+... +++++.+|+.+ +.+  ..|++++..+||+.++
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~d  154 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSD  154 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCH
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeEEecCCccc-ccc--cceEEEEehhhhhCCH
Confidence            4555899999999999753    489999999998 4454433332 78999999875 343  3499999999999987


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ++ ...+|+++++.|+|||+++|.....
T Consensus       155 e~-~~~iL~~~~~aL~pgg~llI~e~v~  181 (244)
T d1fp1d2         155 EK-CIEFLSNCHKALSPNGKVIIVEFIL  181 (244)
T ss_dssp             HH-HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HH-HHHHHHHHHHHcCCCcEEEEEEEEe
Confidence            55 7899999999999999999997643

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.4e-09  Score=98.58  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=75.9

Q ss_pred             CCCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEech--
Q 018606           80 PSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA--  146 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~--  146 (353)
                      ..+.+|||+|||+|...    ...|...|+|+|+|+.+++.|+++       +++++++|+.. ++++.+||+|+|+-  
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPY  185 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY  185 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchh
Confidence            45578999999999964    247889999999999999999987       57899999876 45567999999952  


Q ss_pred             -----------hhhhcCC---------hhHHHHHHHHHHhccccCcEEEEEE
Q 018606          147 -----------VLHHLST---------ESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       147 -----------vl~h~~~---------~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                                 ++.|-+.         .+-...++.+..+.|+|||.+++..
T Consensus       186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi  237 (274)
T d2b3ta1         186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  237 (274)
T ss_dssp             BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence                       1222111         0124578899999999999999864

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=1.4e-09  Score=93.50  Aligned_cols=112  Identities=15%  Similarity=0.265  Sum_probs=84.9

Q ss_pred             HHHHHHHhCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC-----C
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----Y  134 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~-----~  134 (353)
                      ..+..++ ...++..+||++||+|.++.    ..+++.|+|+|.++.|++.|+++      ++.++++++.++.     +
T Consensus        13 ~evi~~l-~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~   91 (192)
T d1m6ya2          13 REVIEFL-KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL   91 (192)
T ss_dssp             HHHHHHH-CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred             HHHHHhh-CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHc
Confidence            4555666 45778899999999998743    36789999999999999999986      5788898887643     4


Q ss_pred             CCCCccEEEechhh--hhcCChh----HHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          135 RSDFGDAAISIAVL--HHLSTES----RRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       135 ~~~~fD~Vi~~~vl--~h~~~~e----~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      ..+.||.|+....+  +++...+    .....|..+.++|+|||++++..|...
T Consensus        92 ~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~  145 (192)
T d1m6ya2          92 GIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSL  145 (192)
T ss_dssp             TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHH
T ss_pred             CCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccH
Confidence            45789999875432  2222221    256889999999999999999887643

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.83  E-value=5.9e-10  Score=103.37  Aligned_cols=103  Identities=16%  Similarity=0.064  Sum_probs=76.2

Q ss_pred             CCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC----CCCCCCCccEEEec
Q 018606           79 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN----LPYRSDFGDAAISI  145 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~----l~~~~~~fD~Vi~~  145 (353)
                      ..+|.+|||++||+|.++..  ..+.+|+++|+|+.+++.|+++       +++++++|+.+    ++...+.||+|++.
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HhCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            34689999999999998532  3456999999999999999986       46789998865    33446789999984


Q ss_pred             hhhhhcC------ChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          146 AVLHHLS------TESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       146 ~vl~h~~------~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      ---....      .......++..+.++|+|||.|++++.+.
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            3110000      01114578889999999999999887653

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.81  E-value=1.7e-09  Score=100.46  Aligned_cols=109  Identities=17%  Similarity=0.111  Sum_probs=78.2

Q ss_pred             HHHHhC-CCCCCEEEEECCcccccccc---CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC----CCCCC
Q 018606           73 ATFLNS-LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN----LPYRS  136 (353)
Q Consensus        73 ~~~l~~-l~~~~~VLDvGCG~G~~~~~---~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~----l~~~~  136 (353)
                      ..++.. +.+|.+|||+|||+|.++..   ....+|+++|+|+.+++.|+++        +++++++|+..    ++...
T Consensus       136 r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~  215 (324)
T d2as0a2         136 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKG  215 (324)
T ss_dssp             HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTT
T ss_pred             HHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhcc
Confidence            334443 57899999999999997532   3234899999999999999886        35788998765    23456


Q ss_pred             CCccEEEechhhhhcC--C----hhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          137 DFGDAAISIAVLHHLS--T----ESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       137 ~~fD~Vi~~~vl~h~~--~----~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      .+||+|++..--....  .    ......++..+.++|+|||+|++++-+.
T Consensus       216 ~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         216 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            7899999843211000  0    0114567888999999999999987554

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.81  E-value=1.7e-09  Score=97.38  Aligned_cols=99  Identities=14%  Similarity=0.168  Sum_probs=77.3

Q ss_pred             HHhCCCCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEE
Q 018606           75 FLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAI  143 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi  143 (353)
                      +...+.+|.+|||+|||+|.+..   .....+|+++|+++.+++.++++        .++++++|+..++. .+.||.|+
T Consensus       101 i~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii  179 (260)
T d2frna1         101 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRIL  179 (260)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred             HHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEE
Confidence            44456889999999999999843   24446999999999999999876        36889999988764 57899998


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +..    ...   ...++.++.++|++||.+.+..+..
T Consensus       180 ~~~----p~~---~~~~l~~a~~~l~~gG~lh~~~~~~  210 (260)
T d2frna1         180 MGY----VVR---THEFIPKALSIAKDGAIIHYHNTVP  210 (260)
T ss_dssp             ECC----CSS---GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ECC----CCc---hHHHHHHHHhhcCCCCEEEEEeccc
Confidence            752    112   2457888899999999998776543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.74  E-value=5.4e-09  Score=93.11  Aligned_cols=96  Identities=16%  Similarity=0.179  Sum_probs=77.2

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCCccEEEechhhhhcCChh
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES  155 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e  155 (353)
                      ...+|||||||+|.++.    ..|+.++++.|+ +..++.+... +++++.+|+.+ +.+  .+|++++..+||++++++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d~~  155 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKD  155 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHH
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcccCceEEEecCccc-CCC--CCcEEEEEeecccCChHH
Confidence            34689999999999863    489999999998 4555544333 78999999876 333  469999999999998765


Q ss_pred             HHHHHHHHHHhccccC---cEEEEEEcCC
Q 018606          156 RRKKAIEELVRVVKKG---SLVLITVWAV  181 (353)
Q Consensus       156 ~~~~~l~el~rvLkpg---G~lli~~~~~  181 (353)
                       ..++|+++++.|+||   |+++|.....
T Consensus       156 -~~~iL~~~~~al~pgg~~~~lli~e~~~  183 (244)
T d1fp2a2         156 -CLRILKKCKEAVTNDGKRGKVTIIDMVI  183 (244)
T ss_dssp             -HHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             -HHHHHHHHHHHcCcccCCcEEEEEEeec
Confidence             688999999999998   7888886543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.69  E-value=1e-08  Score=88.34  Aligned_cols=63  Identities=29%  Similarity=0.325  Sum_probs=52.9

Q ss_pred             CCCEEEEECCccccccc--c-CCCcEEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCCccEEEech
Q 018606           81 SGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~-~~~~~v~gvD~S~~~l~~a~~~--~i~~~~~D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .|.+|||+|||+|.+..  . .....|+|+|+++.+++.|+++  +++++++|+..++   +.||+|+++-
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NP  115 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNP  115 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCc
Confidence            58899999999998742  2 3335899999999999999988  6899999998864   6799999963

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.68  E-value=1e-08  Score=84.52  Aligned_cols=103  Identities=16%  Similarity=0.099  Sum_probs=74.0

Q ss_pred             HHHHHhCCCCCCEEEEECCccccccc--cCCC-cEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCCc
Q 018606           72 VATFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFG  139 (353)
Q Consensus        72 ~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~-~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~~~~~~f  139 (353)
                      +..++...-.|.+|||+|||+|.+..  +..+ .+|+++|.++.+++.+++.        .++++++|+... ....++|
T Consensus         5 ~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~f   84 (152)
T d2esra1           5 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRF   84 (152)
T ss_dssp             HHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCE
T ss_pred             HHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccccccc
Confidence            44556555578999999999998742  2344 4999999999999998886        368899998763 4556889


Q ss_pred             cEEEechhhhhcCChhHHHHHHHHH--HhccccCcEEEEEE
Q 018606          140 DAAISIAVLHHLSTESRRKKAIEEL--VRVVKKGSLVLITV  178 (353)
Q Consensus       140 D~Vi~~~vl~h~~~~e~~~~~l~el--~rvLkpgG~lli~~  178 (353)
                      |+|++.--..    .......+..+  .++|+|||.+++..
T Consensus        85 DiIf~DPPy~----~~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          85 DLVFLDPPYA----KETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             EEEEECCSSH----HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ceeEechhhc----cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence            9999853211    11133445544  36799999998874

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.67  E-value=4.5e-09  Score=96.55  Aligned_cols=112  Identities=12%  Similarity=-0.014  Sum_probs=79.4

Q ss_pred             hHHHHHHHhCCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCC----
Q 018606           69 WPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLP----  133 (353)
Q Consensus        69 ~~~~~~~l~~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~----  133 (353)
                      |..+...+....++.+|||++||+|.+..  ...+++|+++|.|+.+++.|+++         .++|+++|+...-    
T Consensus       120 r~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~  199 (309)
T d2igta1         120 WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE  199 (309)
T ss_dssp             HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHh
Confidence            45555666667778999999999999753  35567999999999999999986         3678999987631    


Q ss_pred             CCCCCccEEEech---hhh----hcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          134 YRSDFGDAAISIA---VLH----HLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       134 ~~~~~fD~Vi~~~---vl~----h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .....||+||+.-   ...    ...-......++..+.++|+|||.+++.+.+
T Consensus       200 ~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         200 RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             hcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence            3357899999831   100    0000122345677888999999986666543

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.63  E-value=8.9e-09  Score=91.57  Aligned_cols=96  Identities=18%  Similarity=0.176  Sum_probs=75.6

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCCccEEEechhhhhcCCh
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE  154 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~  154 (353)
                      ....+|||||||+|.++.    ..|+.+++++|+... ++.++.. ++.++.+|+.. +.+.  .|+++...++|..++.
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~  155 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDAPSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDE  155 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTCCCCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHH
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhcccCCceEEecccccc-cCCC--cceEEEEEEeecCCHH
Confidence            345799999999999753    489999999998653 4433333 68899999865 3443  4778889999998765


Q ss_pred             hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          155 SRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       155 e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      + ...+|++++++|+|||+++|....
T Consensus       156 ~-~~~iL~~~~~al~pgg~~li~d~~  180 (243)
T d1kyza2         156 H-CLKFLKNCYEALPDNGKVIVAECI  180 (243)
T ss_dssp             H-HHHHHHHHHHHCCSSSCEEEEECE
T ss_pred             H-HHHHHHHHHHhcCCCceEEEEEEE
Confidence            5 788999999999999999998754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.59  E-value=1.5e-08  Score=93.53  Aligned_cols=107  Identities=13%  Similarity=0.139  Sum_probs=78.3

Q ss_pred             HHHhCCCCCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC----CCCCC
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL----PYRSD  137 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l----~~~~~  137 (353)
                      .++..+.+|.+|||++||+|.+..  ...++ .|+++|+|+.+++.|+++         +++++++|+...    .-...
T Consensus       137 ~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~  216 (317)
T d2b78a2         137 ELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHL  216 (317)
T ss_dssp             HHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTC
T ss_pred             HHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcC
Confidence            445677889999999999999853  23344 899999999999999876         357899998652    22356


Q ss_pred             CccEEEechh-h----hhcCCh-hHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          138 FGDAAISIAV-L----HHLSTE-SRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       138 ~fD~Vi~~~v-l----~h~~~~-e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .||+||+.-- +    ..+... ....+++..+.++|+|||.|++++-+
T Consensus       217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            8999998421 0    011111 12457899999999999999998754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.55  E-value=3.6e-08  Score=82.86  Aligned_cols=98  Identities=13%  Similarity=0.113  Sum_probs=65.9

Q ss_pred             CCCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc----C--CeEEEeeCCC----CCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVN----LPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~----~--i~~~~~D~~~----l~~~~~~fD~Vi~~  145 (353)
                      .+..|.+|||+|||+|.+..  ...++.++++|.++.+++.++++    +  .++...+...    ......+||+|++.
T Consensus        38 ~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D  117 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             HCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence            45678899999999999743  35678999999999999999876    2  3455555432    12445789999985


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      --.+ ....+....++.  ..+|+|||++++..
T Consensus       118 PPY~-~~~~~~l~~l~~--~~ll~~~g~ivie~  147 (171)
T d1ws6a1         118 PPYA-MDLAALFGELLA--SGLVEAGGLYVLQH  147 (171)
T ss_dssp             CCTT-SCTTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred             cccc-cCHHHHHHHHHH--cCCcCCCeEEEEEe
Confidence            3222 121111222222  35799999988764

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=2.8e-08  Score=86.59  Aligned_cols=102  Identities=21%  Similarity=0.219  Sum_probs=72.4

Q ss_pred             HHHHhCCCCCCEEEEECCcccccc----cc-CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-----
Q 018606           73 ATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-----  133 (353)
Q Consensus        73 ~~~l~~l~~~~~VLDvGCG~G~~~----~~-~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~-----  133 (353)
                      ...+.......+|||||||+|..+    .. .++.+++++|+++.+++.|++.        .++++.+|.... +     
T Consensus        48 L~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~  127 (214)
T d2cl5a1          48 MDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK  127 (214)
T ss_dssp             HHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHH
T ss_pred             HHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhc
Confidence            333333334479999999999853    22 4578999999999999999875        478999988653 2     


Q ss_pred             CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       134 ~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +..+.||+|+..+.-...    .....+.+..++|||||++++..
T Consensus       128 ~~~~~~D~ifiD~~~~~~----~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         128 YDVDTLDMVFLDHWKDRY----LPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             SCCCCEEEEEECSCGGGH----HHHHHHHHHTTCEEEEEEEEESC
T ss_pred             ccccccceeeeccccccc----ccHHHHHHHhCccCCCcEEEEeC
Confidence            345789999986421111    12345777889999999877654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.46  E-value=9.7e-08  Score=82.27  Aligned_cols=65  Identities=17%  Similarity=0.268  Sum_probs=52.1

Q ss_pred             CCCEEEEECCccccccc--c-CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEEEechhh
Q 018606           81 SGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVL  148 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~-~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl  148 (353)
                      .|.+|||+|||+|.++.  . .....|+|+|+++.+++.|+++      ..+++.+|+..+   .+.||+|++.--.
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF  119 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence            57899999999999743  2 3335999999999999999986      457888888765   4679999996544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.3e-07  Score=82.55  Aligned_cols=104  Identities=15%  Similarity=0.118  Sum_probs=78.7

Q ss_pred             HHHHHHhCCCCCCEEEEECCcccccc----c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C---
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P---  133 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~----~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~---  133 (353)
                      .+...+.......+|||||||+|.-+    . ...+++++.+|.++...+.|++.        .++++.+|+... +   
T Consensus        49 ~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~  128 (219)
T d2avda1          49 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL  128 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhh
Confidence            44555555556689999999999853    2 24578999999999999999876        478899987552 1   


Q ss_pred             --CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          134 --YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       134 --~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                        ...+.||+|+..+-    .  +.....+..+.+.|+|||.+++....
T Consensus       129 ~~~~~~~fD~ifiD~d----k--~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         129 AAGEAGTFDVAVVDAD----K--ENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             HTTCTTCEEEEEECSC----S--TTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             hhcccCCccEEEEeCC----H--HHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence              34578999998642    1  22567889999999999999987543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.33  E-value=5.9e-07  Score=82.67  Aligned_cols=102  Identities=22%  Similarity=0.228  Sum_probs=74.6

Q ss_pred             CCCCCCEEEEECCcccccccc---------CCCcEEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCCccEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL---------NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~---------~~~~~v~gvD~S~~~l~~a~~~------~i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      ...++.+|||.|||+|.++..         .....++|+|+++.+++.|+..      ...+..+|..... ....||+|
T Consensus       114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v  192 (328)
T d2f8la1         114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVV  192 (328)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEE
T ss_pred             CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-cccccccc
Confidence            345678999999999998631         3445899999999999998865      4677777766543 35789999


Q ss_pred             EechhhhhcCChhH---------------HHHHHHHHHhccccCcEEEEEEcC
Q 018606          143 ISIAVLHHLSTESR---------------RKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       143 i~~~vl~h~~~~e~---------------~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++.--+......+.               ...++..+.+.|+|||++.+.++.
T Consensus       193 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         193 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             ccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence            99754322222111               234799999999999999888765

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=5e-07  Score=76.45  Aligned_cols=94  Identities=11%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             CCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-CCCCCCccEEEechhhh
Q 018606           81 SGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-------GHEVLVADAVNL-PYRSDFGDAAISIAVLH  149 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l-~~~~~~fD~Vi~~~vl~  149 (353)
                      .+.+|||++||+|.+.-  +..|+ .|+.+|.+..+++.++++       +..++.+|+... ......||+|++.--..
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~  122 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  122 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence            56899999999999853  34454 899999999999999876       567788887653 34467899999964322


Q ss_pred             hcCChhHHHHHHHHHHh--ccccCcEEEEEE
Q 018606          150 HLSTESRRKKAIEELVR--VVKKGSLVLITV  178 (353)
Q Consensus       150 h~~~~e~~~~~l~el~r--vLkpgG~lli~~  178 (353)
                      . ..   ...++..+.+  +|+++|.+++..
T Consensus       123 ~-~~---~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         123 R-GL---LEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             T-TT---HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             c-ch---HHHHHHHHHHCCCCCCCeEEEEEe
Confidence            1 11   3455555554  699999998864

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.19  E-value=1.4e-06  Score=73.65  Aligned_cols=101  Identities=12%  Similarity=0.098  Sum_probs=72.5

Q ss_pred             HHHhCCCCCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC----CCCCCC
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL----PYRSDF  138 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l----~~~~~~  138 (353)
                      .++.....|.+|||++||+|.+.-  +..|+ .|+++|.+..+++.++++        +++++++|+...    .-....
T Consensus        34 n~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~  113 (182)
T d2fhpa1          34 NMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQ  113 (182)
T ss_dssp             HHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCC
Confidence            344444578999999999999743  34444 899999999999999876        467899998652    123568


Q ss_pred             ccEEEechhhhhcCChhHHHHHHHHHH--hccccCcEEEEEE
Q 018606          139 GDAAISIAVLHHLSTESRRKKAIEELV--RVVKKGSLVLITV  178 (353)
Q Consensus       139 fD~Vi~~~vl~h~~~~e~~~~~l~el~--rvLkpgG~lli~~  178 (353)
                      ||+|++.--.. ...   ....+..+.  .+|+++|.+++..
T Consensus       114 fDlIflDPPY~-~~~---~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         114 FDLVLLDPPYA-KQE---IVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             EEEEEECCCGG-GCC---HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cceEEechhhh-hhH---HHHHHHHHHHCCCCCCCEEEEEEc
Confidence            99999854221 122   455677665  4799999988765

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.19  E-value=1.2e-06  Score=80.20  Aligned_cols=95  Identities=19%  Similarity=0.136  Sum_probs=72.7

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCC-CCCCCCccEE
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL-PYRSDFGDAA  142 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~------------~i~~~~~D~~~l-~~~~~~fD~V  142 (353)
                      +...+||.||.|.|..+.    ..+..+|+++|+++.+++.|++.            +++++.+|+... .-.++.||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            345799999999998754    34567999999999999999874            468899998763 2335689999


Q ss_pred             Eechh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          143 ISIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       143 i~~~v--------l~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ++-..        -.++-+    .++++.+.+.|+|||++++..
T Consensus       156 i~D~~dp~~~~~~~~~L~t----~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYT----VEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSS----HHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhh----HHHHHHHHHhcCCCceEEEec
Confidence            97432        112322    578999999999999998764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.17  E-value=1.9e-06  Score=72.79  Aligned_cols=112  Identities=17%  Similarity=0.212  Sum_probs=82.0

Q ss_pred             HHHHHHHhCCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCC-----CCCCCc
Q 018606           70 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLP-----YRSDFG  139 (353)
Q Consensus        70 ~~~~~~l~~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~-----~~~~~f  139 (353)
                      ..+..++ .+.+|..++|..||.|.++..  ..+.+|+|+|..+.+++.|++.   ++.+++.++..+.     +..+.+
T Consensus         8 ~Evl~~l-~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~v   86 (182)
T d1wg8a2           8 QEALDLL-AVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERV   86 (182)
T ss_dssp             HHHHHHH-TCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred             HHHHHhc-CCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCcc
Confidence            3455555 357889999999999987542  3467999999999999999876   6788888877643     334678


Q ss_pred             cEEEechhh--hhcCChhH----HHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          140 DAAISIAVL--HHLSTESR----RKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       140 D~Vi~~~vl--~h~~~~e~----~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      |.|+....+  .++.++++    ....|.....+|+|||++++..|...
T Consensus        87 dgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~  135 (182)
T d1wg8a2          87 DGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSL  135 (182)
T ss_dssp             EEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHH
T ss_pred             CEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccc
Confidence            998874322  22333221    44578888999999999999988643

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.15  E-value=8.3e-07  Score=79.99  Aligned_cols=97  Identities=13%  Similarity=0.108  Sum_probs=72.2

Q ss_pred             CCCCEEEEECCccccccc---cCCCcEEEEEeCCHHHHHHHHHc-----------------CCeEEEeeCCCCCCCCCCc
Q 018606           80 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNLPYRSDFG  139 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~-----------------~i~~~~~D~~~l~~~~~~f  139 (353)
                      +...+||-||+|.|..+.   ..+..+|+++|+++.+++.|++.                 +++++.+|+...--.+++|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            455799999999998653   23445899999999999999863                 3678888886532235789


Q ss_pred             cEEEechhh-----hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          140 DAAISIAVL-----HHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       140 D~Vi~~~vl-----~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      |+||+-..-     .++-+    .++++.+.+.|+|||++++...+
T Consensus       151 DvIi~D~~~~~~~~~~L~t----~eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         151 DVIIADSTDPVGPAKVLFS----EEFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             EEEEEECCCCC-----TTS----HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCCcccccC----HHHHHhhHhhcCCCceEEEecCC
Confidence            999984322     22222    57899999999999999887543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=8.1e-07  Score=75.00  Aligned_cols=102  Identities=18%  Similarity=0.167  Sum_probs=74.5

Q ss_pred             CCCCCCEEEEECCcccccccc-----CCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~-----~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      -+.++.+||||||++|.+++.     .....++|+|+.+-    ..-.+..++++|+....        ...+.+|+|++
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlS   94 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS   94 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhccCcceeEEEe
Confidence            468899999999999998752     45579999998651    01126788999987632        23568999999


Q ss_pred             chh--------hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          145 IAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       145 ~~v--------l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                      -.+        ..|....+.....+.-+.++|++||.+++-+|..+.
T Consensus        95 D~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~  141 (180)
T d1ej0a_          95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG  141 (180)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred             cccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc
Confidence            654        333333333557788889999999999999997543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.1e-06  Score=75.00  Aligned_cols=67  Identities=10%  Similarity=0.048  Sum_probs=49.8

Q ss_pred             CCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC------CCCCCccEEE
Q 018606           82 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP------YRSDFGDAAI  143 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~------~~~~~fD~Vi  143 (353)
                      ..++||||||+|...    ...++.+++|+|+|+.+++.|+++        .+.++..+.....      ..++.||+|+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv  141 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  141 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence            458999999999853    236789999999999999999987        2455555443321      2356899999


Q ss_pred             echhh
Q 018606          144 SIAVL  148 (353)
Q Consensus       144 ~~~vl  148 (353)
                      |+--.
T Consensus       142 sNPPY  146 (250)
T d2h00a1         142 CNPPF  146 (250)
T ss_dssp             ECCCC
T ss_pred             ecCcc
Confidence            96543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.12  E-value=1.8e-06  Score=75.53  Aligned_cols=103  Identities=15%  Similarity=0.077  Sum_probs=77.2

Q ss_pred             HHHHHHhCCCCCCEEEEECCcccccc----c-cCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C---
Q 018606           71 KVATFLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P---  133 (353)
Q Consensus        71 ~~~~~l~~l~~~~~VLDvGCG~G~~~----~-~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~---  133 (353)
                      .+..++.......+|||||+++|.-+    . ...+++++.+|.++...+.|++.        .++++.+|+... +   
T Consensus        49 ~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~  128 (227)
T d1susa1          49 QFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI  128 (227)
T ss_dssp             HHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHH
Confidence            34444444455679999999999843    2 24578999999999999999886        478888888652 2   


Q ss_pred             ---CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          134 ---YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       134 ---~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                         ...+.||+|+.-+-      .......+..+.+.|+|||.+++..-
T Consensus       129 ~~~~~~~~fD~iFiDa~------k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         129 KDEKNHGSYDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             HCGGGTTCBSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             hccccCCceeEEEeccc------hhhhHHHHHHHHhhcCCCcEEEEccC
Confidence               13568999998652      12256788999999999999998843

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=4.5e-06  Score=71.83  Aligned_cols=90  Identities=16%  Similarity=0.124  Sum_probs=71.8

Q ss_pred             CCCEEEEECCccccc----cccCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEEEechhhh
Q 018606           81 SGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH  149 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~----~~~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~  149 (353)
                      ++.+|+|||+|.|.=    +...|+.+++.+|.+..-+...++-       +++++...++.+.. ...||+|++-++  
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~-~~~fD~V~sRA~--  141 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-EPPFDGVISRAF--  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-CSCEEEEECSCS--
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc-ccccceehhhhh--
Confidence            457999999999972    3358999999999999866655542       67888888888753 568999999775  


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                        .+   ...++.-+...+++||.+++.-
T Consensus       142 --~~---~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         142 --AS---LNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             --SS---HHHHHHHHTTSEEEEEEEEEEE
T ss_pred             --cC---HHHHHHHHHHhcCCCcEEEEEC
Confidence              34   5678888999999999988875

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.11  E-value=2.8e-06  Score=76.14  Aligned_cols=98  Identities=18%  Similarity=0.138  Sum_probs=64.9

Q ss_pred             CCEEEEECCcccccc---ccCCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCCccEEEechh--
Q 018606           82 GSLVLDAGCGNGKYL---GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAISIAV--  147 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~---~~~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l-~~~~~~fD~Vi~~~v--  147 (353)
                      ..++||+|||+|..+   ...+...|+++|+|+.+++.|+++        .+.+..+|.... +...+.||+|+++--  
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI  190 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV  190 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred             ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence            458999999999853   236788999999999999999986        245667776653 333478999999520  


Q ss_pred             --hhhcCC-----hh-------HHHHHH-HHHHhccccCcEEEEEEc
Q 018606          148 --LHHLST-----ES-------RRKKAI-EELVRVVKKGSLVLITVW  179 (353)
Q Consensus       148 --l~h~~~-----~e-------~~~~~l-~el~rvLkpgG~lli~~~  179 (353)
                        -..++.     +.       +-..++ +-+.+.|+|||.+++..-
T Consensus       191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig  237 (271)
T d1nv8a_         191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG  237 (271)
T ss_dssp             CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred             CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence              001110     00       001112 124578999999888763

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.04  E-value=1.7e-06  Score=76.15  Aligned_cols=75  Identities=17%  Similarity=0.281  Sum_probs=57.4

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      .+.++.+|||||||+|.++..  ..+..|+++|+++.+++.++++     +++++.+|+..++++......|++ +.=.+
T Consensus        18 ~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv~-NLPYn   96 (235)
T d1qama_          18 RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFG-NIPYN   96 (235)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEE-ECCGG
T ss_pred             CCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccceeee-eehhh
Confidence            356889999999999998753  3456999999999999999886     589999999998876554334443 33344


Q ss_pred             cCC
Q 018606          151 LST  153 (353)
Q Consensus       151 ~~~  153 (353)
                      +++
T Consensus        97 Iss   99 (235)
T d1qama_          97 IST   99 (235)
T ss_dssp             GHH
T ss_pred             hhH
Confidence            543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.99  E-value=4.7e-06  Score=75.56  Aligned_cols=97  Identities=18%  Similarity=0.150  Sum_probs=73.2

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-~~~~~~fD~Vi  143 (353)
                      +...+||-||.|.|..+.    ..+..+|+++|+++.+++.|++.           +++++.+|+... .-.++.||+||
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            344799999999998764    24456999999999999999874           468888888763 23356899999


Q ss_pred             echhh------hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVL------HHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl------~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +-..-      .++-+    .++++.+.+.|+|||++++...+
T Consensus       168 ~D~~dp~~~~~~~L~t----~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         168 IDSTDPTAGQGGHLFT----EEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             EEC----------CCS----HHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCcCchhhhcc----HHHHHHHHhhcCCCcEEEEecCC
Confidence            85322      23333    57999999999999999887644

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.99  E-value=2.6e-06  Score=73.16  Aligned_cols=100  Identities=23%  Similarity=0.318  Sum_probs=70.5

Q ss_pred             CCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCCccEEEechhhhhcC
Q 018606           78 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS  152 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~  152 (353)
                      ..+++.+|||.|||+|.++.     ......++|+|+++.++..++.  ..++.+|...... ...||+|++.--.....
T Consensus        16 ~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~--~~~~~~~~~~~~~-~~~fd~ii~npP~~~~~   92 (223)
T d2ih2a1          16 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW--AEGILADFLLWEP-GEAFDLILGNPPYGIVG   92 (223)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT--EEEEESCGGGCCC-SSCEEEEEECCCCCCBS
T ss_pred             CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccc--ceeeeeehhcccc-ccccceecccCcccccc
Confidence            45678899999999999863     2445689999999887655442  3667777776553 46899999865432111


Q ss_pred             C--------------------------hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          153 T--------------------------ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       153 ~--------------------------~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .                          ......++....+.|++||++.+.++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1          93 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             ccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence            0                          001245678899999999999988754

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=5.2e-06  Score=74.92  Aligned_cols=99  Identities=18%  Similarity=0.163  Sum_probs=73.5

Q ss_pred             CCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-~~~~~~fD~Vi  143 (353)
                      +...+||-||.|.|..+.    ..+..+++++|+.+.+++.|++.           +++++.+|+... .-..++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            445799999999998764    23456999999999999999874           578888887652 23356899999


Q ss_pred             echh-----hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          144 SIAV-----LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       144 ~~~v-----l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +-..     ..++-+    .++++.+.+.|+|||.+++...+..
T Consensus       157 ~D~~~p~~~~~~L~t----~eF~~~~~~~L~~~Gi~v~q~~s~~  196 (285)
T d2o07a1         157 TDSSDPMGPAESLFK----ESYYQLMKTALKEDGVLCCQGECQW  196 (285)
T ss_dssp             EECC---------------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             EcCCCCCCccccccc----HHHHHHHHHhcCCCCeEEEeccchh
Confidence            8532     222322    4689999999999999998876543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.87  E-value=1.3e-05  Score=72.52  Aligned_cols=98  Identities=19%  Similarity=0.230  Sum_probs=74.8

Q ss_pred             CCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCC--CCCCCccEE
Q 018606           80 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLP--YRSDFGDAA  142 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l~--~~~~~fD~V  142 (353)
                      +...+||=||-|.|..++.    .+...++++|+++.+++.|++.           +++++.+|+...-  ..++.||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            4457999999999997652    3445899999999999999874           5788888876532  345689999


Q ss_pred             Eechh-----hhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          143 ISIAV-----LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       143 i~~~v-----l~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      |....     -.++-+    .++++.+.+.|+|||.+++...+.
T Consensus       159 i~D~~dp~~~~~~L~t----~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         159 IVDSSDPIGPAKELFE----KPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             EECCCCTTSGGGGGGS----HHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEcCCCCCCcchhhCC----HHHHHHHHHhcCCCcEEEEecCCc
Confidence            97332     233333    578999999999999999886543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.83  E-value=4.7e-07  Score=80.26  Aligned_cols=75  Identities=15%  Similarity=0.232  Sum_probs=59.6

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCCccEEEechhhhh
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHH  150 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h  150 (353)
                      .+.++..|||||||+|.++..  ..+..|+++|+++.|++.++++     +++++.+|+..++++...++.|+++- =.|
T Consensus        26 ~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv~NL-PY~  104 (245)
T d1yuba_          26 NLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGNI-PYH  104 (245)
T ss_dssp             CCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEEEEC-CSS
T ss_pred             CCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeEeeee-ehh
Confidence            456788999999999999753  3456999999999999888765     57899999999998777766666543 356


Q ss_pred             cCC
Q 018606          151 LST  153 (353)
Q Consensus       151 ~~~  153 (353)
                      +++
T Consensus       105 Ist  107 (245)
T d1yuba_         105 LST  107 (245)
T ss_dssp             SCH
T ss_pred             hhH
Confidence            765

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.82  E-value=1.5e-05  Score=71.46  Aligned_cols=97  Identities=18%  Similarity=0.111  Sum_probs=73.6

Q ss_pred             CCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-~~~~~~fD~Vi  143 (353)
                      +...+||-||-|.|..+..    .+..+|+.+|+++.+++.|++.           +++++.+|+... .-.+++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            3457999999999997642    3446999999999999999875           468888887652 23357899999


Q ss_pred             echhh-----hhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVL-----HHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl-----~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .-..-     .++-+    .++++.+.+.|+|||+++....+
T Consensus       154 ~D~~~p~~~~~~L~t----~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFT----KGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             ESCSSCCSCCCCCST----THHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhcc----HHHHHHHHhhcCCCceEEEecCC
Confidence            85321     12333    47899999999999999877544

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.76  E-value=3.6e-05  Score=70.19  Aligned_cols=112  Identities=14%  Similarity=0.183  Sum_probs=79.2

Q ss_pred             HHhCCCCCCEEEEECCccccc---c-c-cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCCccEE
Q 018606           75 FLNSLPSGSLVLDAGCGNGKY---L-G-LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAA  142 (353)
Q Consensus        75 ~l~~l~~~~~VLDvGCG~G~~---~-~-~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~~~~fD~V  142 (353)
                      .+....+|.+|||++||+|.=   + . ....+.++++|+++.-+...+++       ++.+...|...++.....||.|
T Consensus       110 ~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~I  189 (313)
T d1ixka_         110 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKI  189 (313)
T ss_dssp             HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEE
T ss_pred             hcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEE
Confidence            334568899999999999972   2 2 25567999999999988777654       4555666777776667889999


Q ss_pred             Eec------hhhhhcC------Chh-------HHHHHHHHHHhccccCcEEEEEEcCCCccch
Q 018606          143 ISI------AVLHHLS------TES-------RRKKAIEELVRVVKKGSLVLITVWAVEQEDK  186 (353)
Q Consensus       143 i~~------~vl~h~~------~~e-------~~~~~l~el~rvLkpgG~lli~~~~~~~~~~  186 (353)
                      ++-      +++..-+      ..+       ...++|....+.|||||+++-++-+......
T Consensus       190 LvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eEN  252 (313)
T d1ixka_         190 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEEN  252 (313)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGT
T ss_pred             EEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhH
Confidence            982      2222211      111       1457888999999999999988877765443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.74  E-value=9.6e-06  Score=73.90  Aligned_cols=101  Identities=16%  Similarity=0.108  Sum_probs=70.0

Q ss_pred             CCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCCccEEE
Q 018606           80 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI  143 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~a~~~-----------~i~~~~~D~~~l-~~~~~~fD~Vi  143 (353)
                      +...+||-||.|.|..++.    .+..+|+.+|+.+.+++.|++.           +++++.+|+... .-..+.||+||
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            4457999999999987642    3445999999999999999985           457777887652 22357899999


Q ss_pred             echhhhhcCC-hhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVLHHLST-ESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~h~~~-~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +-..-..-+. .---.++++.+.+.|+|||+++...-+
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence            8543211110 000257899999999999999887543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=0.00017  Score=64.67  Aligned_cols=111  Identities=17%  Similarity=0.215  Sum_probs=73.9

Q ss_pred             HhCCCCCCEEEEECCccccc----cccCCCcEEEEEeCCHHHHHHHHHc----CCe--EEEeeCCCCC--CCCCCccEEE
Q 018606           76 LNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR----GHE--VLVADAVNLP--YRSDFGDAAI  143 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~----~~~~~~~~v~gvD~S~~~l~~a~~~----~i~--~~~~D~~~l~--~~~~~fD~Vi  143 (353)
                      +....+|.+|||+++|+|.=    +....+..|+++|+++.-++..+++    ++.  ....+.....  .....||.|+
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL  176 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRIL  176 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEE
T ss_pred             ccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEE
Confidence            34667899999999999973    2335568999999999877666654    443  2222222211  2356899999


Q ss_pred             e------chhhhhcCCh-------------hHHHHHHHHHHhccccCcEEEEEEcCCCccch
Q 018606          144 S------IAVLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQEDK  186 (353)
Q Consensus       144 ~------~~vl~h~~~~-------------e~~~~~l~el~rvLkpgG~lli~~~~~~~~~~  186 (353)
                      +      .+++..-++.             ....++|....+.|||||+|+-++-+......
T Consensus       177 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~EN  238 (284)
T d1sqga2         177 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEEN  238 (284)
T ss_dssp             EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGT
T ss_pred             EeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhC
Confidence            8      2333222221             11457888999999999999988877665443

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.58  E-value=5.7e-05  Score=66.06  Aligned_cols=91  Identities=18%  Similarity=0.049  Sum_probs=69.5

Q ss_pred             CCCEEEEECCccccc----cccCCCcEEEEEeCCHHHHHHHHH---c----CCeEEEeeCCCCCC---CCCCccEEEech
Q 018606           81 SGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVD---R----GHEVLVADAVNLPY---RSDFGDAAISIA  146 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~----~~~~~~~~v~gvD~S~~~l~~a~~---~----~i~~~~~D~~~l~~---~~~~fD~Vi~~~  146 (353)
                      .+.+++|||+|.|.-    +...|+..++-+|.+..-+...+.   .    ++.++...++.+..   ..+.||+|++-+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            567999999999872    234889999999999886655443   2    56777777765432   246899999986


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +    .+   ...++.-+...+++||.+++.=
T Consensus       150 v----a~---l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         150 V----AR---LSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             C----SC---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             h----hC---HHHHHHHHhhhcccCCEEEEEC
Confidence            4    34   6788999999999999988774

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.46  E-value=0.00012  Score=69.34  Aligned_cols=131  Identities=15%  Similarity=0.245  Sum_probs=84.4

Q ss_pred             HHHHHHHhhcccccc------ccccChHHHHHHHh---CCCCCCEEEEECCcccccccc--------CC---------Cc
Q 018606           49 YVHRVYDAIAPHFSS------TRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL--------NP---------DC  102 (353)
Q Consensus        49 ~v~~~yd~~a~~y~~------~~~~~~~~~~~~l~---~l~~~~~VLDvGCG~G~~~~~--------~~---------~~  102 (353)
                      .+.++|+.+-..+..      ..+-..+.+..++.   ...++.+|+|.+||+|.++..        ..         ..
T Consensus       121 ~~g~~yE~ll~~~~~~~~k~~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~  200 (425)
T d2okca1         121 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDK  200 (425)
T ss_dssp             HHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhhccchhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhh
Confidence            345556555443321      12333344444433   345678999999999998631        11         23


Q ss_pred             EEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCCCCccEEEechhhhhc--------------CChhHHHH
Q 018606          103 FFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL--------------STESRRKK  159 (353)
Q Consensus       103 ~v~gvD~S~~~l~~a~~~---------~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~--------------~~~e~~~~  159 (353)
                      .+.|+|+++.+...|+-+         ...+...|....+ ....||+|+++--+...              .....-..
T Consensus       201 ~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~  279 (425)
T d2okca1         201 ALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN  279 (425)
T ss_dssp             TEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHH
T ss_pred             hhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHH
Confidence            599999999999998864         2467777776543 35789999995433211              01111246


Q ss_pred             HHHHHHhccccCcEEEEEEcC
Q 018606          160 AIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       160 ~l~el~rvLkpgG~lli~~~~  180 (353)
                      ++..+...|++||++.+.++.
T Consensus       280 Fi~~~~~~Lk~~G~~~iI~p~  300 (425)
T d2okca1         280 FLQHMMLMLKTGGRAAVVLPD  300 (425)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEH
T ss_pred             HHHHHHHhcCCCCeEEEEech
Confidence            899999999999999988764

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.42  E-value=3.7e-05  Score=67.06  Aligned_cols=100  Identities=19%  Similarity=0.213  Sum_probs=65.4

Q ss_pred             HHHhCCCCCCEEEEECCccccccc--------cCCCcEEEEEeCCHHHHHHHHH--cCCeEEEeeCCCCC----CCCCCc
Q 018606           74 TFLNSLPSGSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVD--RGHEVLVADAVNLP----YRSDFG  139 (353)
Q Consensus        74 ~~l~~l~~~~~VLDvGCG~G~~~~--------~~~~~~v~gvD~S~~~l~~a~~--~~i~~~~~D~~~l~----~~~~~f  139 (353)
                      .++..++| .+|||||++.|.-+.        ....++++|+|+.+.....+..  .+++++++|.....    +....+
T Consensus        74 eli~~~KP-k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~  152 (232)
T d2bm8a1          74 DMLWELRP-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAH  152 (232)
T ss_dssp             HHHHHHCC-SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred             HHHHHhCC-CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCC
Confidence            34444454 589999999997321        2467899999998765443322  27899999977533    334567


Q ss_pred             cEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          140 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       140 D~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      |+|+.-+. | ....  ...-+ ++...|++||.++|.+.
T Consensus       153 dlIfID~~-H-~~~~--v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         153 PLIFIDNA-H-ANTF--NIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             SEEEEESS-C-SSHH--HHHHH-HHHHTCCTTCEEEECSC
T ss_pred             CEEEEcCC-c-chHH--HHHHH-HHhcccCcCCEEEEEcC
Confidence            88776554 3 3321  12223 46689999999998753

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00081  Score=60.27  Aligned_cols=110  Identities=14%  Similarity=0.091  Sum_probs=70.1

Q ss_pred             HhCCCCCCEEEEECCcccccc----c-cCCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC---CCCcc
Q 018606           76 LNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGD  140 (353)
Q Consensus        76 l~~l~~~~~VLDvGCG~G~~~----~-~~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l~~~---~~~fD  140 (353)
                      +....+|.+|||++||+|.=+    . ......|+++|+++.-++.++++       ++.+...|...+...   .+.||
T Consensus        89 ~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD  168 (293)
T d2b9ea1          89 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH  168 (293)
T ss_dssp             HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             ccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceee
Confidence            335678999999999999732    2 25667999999999888777665       467777888776432   25799


Q ss_pred             EEEec------hhhhhcCC--------h---h----HHHHHHHHHHhccccCcEEEEEEcCCCccch
Q 018606          141 AAISI------AVLHHLST--------E---S----RRKKAIEELVRVVKKGSLVLITVWAVEQEDK  186 (353)
Q Consensus       141 ~Vi~~------~vl~h~~~--------~---e----~~~~~l~el~rvLkpgG~lli~~~~~~~~~~  186 (353)
                      .|+.-      +++...++        .   .    ....++.... .|+|||.|+-++-+......
T Consensus       169 ~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~EN  234 (293)
T d2b9ea1         169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEEN  234 (293)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGT
T ss_pred             EEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHh
Confidence            99983      23222111        0   0    0123444444 47999998877766655433

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=0.0005  Score=63.09  Aligned_cols=94  Identities=14%  Similarity=0.224  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC----CCCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL----PYRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-------~i~~~~~D~~~l----~~~~~~fD~Vi~  144 (353)
                      ...++.+|||+-||.|.+...  ....+|+|+|.++.+++.|+++       ++.|+.+|....    +.....+|+||.
T Consensus       209 ~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vil  288 (358)
T d1uwva2         209 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL  288 (358)
T ss_dssp             TCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             ccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEe
Confidence            355778999999999998642  4557999999999999999876       578999988763    233467899987


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .-      +..-..+.+..+.+. +|.-+++|+.
T Consensus       289 DP------PR~G~~~~~~~l~~~-~~~~ivYVSC  315 (358)
T d1uwva2         289 DP------ARAGAAGVMQQIIKL-EPIRIVYVSC  315 (358)
T ss_dssp             CC------CTTCCHHHHHHHHHH-CCSEEEEEES
T ss_pred             CC------CCccHHHHHHHHHHc-CCCEEEEEeC
Confidence            31      111123455555543 6665666653

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.33  E-value=7.2e-05  Score=62.63  Aligned_cols=95  Identities=17%  Similarity=0.148  Sum_probs=64.5

Q ss_pred             CCCEEEEECCccccccc--cCCCc-EEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCC---CCCCCCCccEEEec
Q 018606           81 SGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR----G-----HEVLVADAVN---LPYRSDFGDAAISI  145 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~--~~~~~-~v~gvD~S~~~l~~a~~~----~-----i~~~~~D~~~---l~~~~~~fD~Vi~~  145 (353)
                      .+.+|||+.||+|.+.-  +..|+ .|+.+|.+...++..+++    +     ..+...|+..   .......||+|++.
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD  122 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  122 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence            46799999999999742  34454 999999999999988876    2     2334444332   23345579999985


Q ss_pred             hhhhhcCChhHHHHHHHHHH--hccccCcEEEEEEc
Q 018606          146 AVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVW  179 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~--rvLkpgG~lli~~~  179 (353)
                      --... .   ....++..+.  .+|+++|.+++...
T Consensus       123 PPY~~-~---~~~~~l~~l~~~~~L~~~~liiiE~~  154 (183)
T d2ifta1         123 PPFHF-N---LAEQAISLLCENNWLKPNALIYVETE  154 (183)
T ss_dssp             CCSSS-C---HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             hhHhh-h---hHHHHHHHHHHhCCcCCCcEEEEEec
Confidence            33211 1   1345666664  47999999988753

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00011  Score=64.73  Aligned_cols=57  Identities=11%  Similarity=0.103  Sum_probs=48.4

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCC
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPY  134 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~-----~i~~~~~D~~~l~~  134 (353)
                      .+.++..|||||||+|.++..  ..+.+|+++|+++.+++..+++     +++++.+|+..+++
T Consensus        18 ~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          18 NPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             CCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence            456788999999999999753  5567999999999999999876     57899999998764

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00032  Score=62.58  Aligned_cols=66  Identities=24%  Similarity=0.351  Sum_probs=52.8

Q ss_pred             CCCCCCEEEEECCcccccccc--CCCcEEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~--~~~~~v~gvD~S~~~l~~a~~~--------~i~~~~~D~~~l~~~~~~fD~Vi~~  145 (353)
                      .+.++..|||||+|+|.++..  ..+..|+++++++.+++..++.        +++++.+|+...+++.  ++.|+++
T Consensus        18 ~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~--~~~vV~N   93 (278)
T d1zq9a1          18 ALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF--FDTCVAN   93 (278)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC--CSEEEEE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh--hhhhhcc
Confidence            466789999999999999753  3456999999999999998874        5789999999877643  3556654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.99  E-value=0.00016  Score=63.05  Aligned_cols=102  Identities=11%  Similarity=0.053  Sum_probs=62.8

Q ss_pred             CCCCCCEEEEECCcccccccc----CCCcEEEEEeCCHHHHHH--HHHc---CC-eEEEe-eCCCCCCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKI--CVDR---GH-EVLVA-DAVNLPYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~~----~~~~~v~gvD~S~~~l~~--a~~~---~i-~~~~~-D~~~l~~~~~~fD~Vi~~~  146 (353)
                      .+.++..|+|+|||+|.++..    .+...+.|+|+--...+.  ..+.   ++ ++... |+..  .+...+|+|+|..
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm  140 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDI  140 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEECC
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHh--cCCCcCCEEEeeC
Confidence            467888999999999997642    334578888874321100  0000   11 22222 2222  3467899999975


Q ss_pred             hhhhcCC----hhHHHHHHHHHHhccccCcEEEEEEcCCC
Q 018606          147 VLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAVE  182 (353)
Q Consensus       147 vl~h~~~----~e~~~~~l~el~rvLkpgG~lli~~~~~~  182 (353)
                      +-. -++    .++-.++|.-+.+.|+|||.|++-+++.-
T Consensus       141 ~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py  179 (257)
T d2p41a1         141 GES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY  179 (257)
T ss_dssp             CCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred             CCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence            422 221    22334677778899999999999998753

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0003  Score=68.28  Aligned_cols=134  Identities=8%  Similarity=0.145  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhhcccccc------ccccChHHHHHHHh---CCCCCCEEEEECCcccccccc--------CC---------
Q 018606           47 KKYVHRVYDAIAPHFSS------TRFAKWPKVATFLN---SLPSGSLVLDAGCGNGKYLGL--------NP---------  100 (353)
Q Consensus        47 ~~~v~~~yd~~a~~y~~------~~~~~~~~~~~~l~---~l~~~~~VLDvGCG~G~~~~~--------~~---------  100 (353)
                      .+.+..+|+.+-..+..      ..+-..+.+..++.   ...++.+|+|.+||+|.++..        ..         
T Consensus       121 ~D~lG~~YE~ll~~~~~~~~~~~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~  200 (524)
T d2ar0a1         121 RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT  200 (524)
T ss_dssp             ------------------------CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHH
T ss_pred             hhHHHHHHHHHHHHHHhhhccccchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhH
Confidence            34556666666554432      12333344444433   345678999999999998621        10         


Q ss_pred             -----CcEEEEEeCCHHHHHHHHHc----CC--------eEEEeeCCCCC-CCCCCccEEEechhhhhcC----------
Q 018606          101 -----DCFFVGCDISPSLIKICVDR----GH--------EVLVADAVNLP-YRSDFGDAAISIAVLHHLS----------  152 (353)
Q Consensus       101 -----~~~v~gvD~S~~~l~~a~~~----~i--------~~~~~D~~~l~-~~~~~fD~Vi~~~vl~h~~----------  152 (353)
                           ...++|+|+++.+...|+-+    +.        .+...+....+ .....||+|+++--+.--.          
T Consensus       201 ~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~  280 (524)
T d2ar0a1         201 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVH  280 (524)
T ss_dssp             HHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSS
T ss_pred             HHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhcc
Confidence                 12689999999999998864    21        23333333221 2346799999954321110          


Q ss_pred             -ChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          153 -TESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       153 -~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                       ....-..++..+.+.|++||++.+.++.
T Consensus       281 ~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~  309 (524)
T d2ar0a1         281 PTSNKQLCFMQHIIETLHPGGRAAVVVPD  309 (524)
T ss_dssp             CCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccccccHHHHHHHHHhccccCcEEEEEeh
Confidence             0001245899999999999999998864

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.52  E-value=0.00075  Score=62.64  Aligned_cols=91  Identities=18%  Similarity=0.050  Sum_probs=65.9

Q ss_pred             CCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHc----C------------------CeEEEeeCCCCC-
Q 018606           81 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G------------------HEVLVADAVNLP-  133 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~----~------------------i~~~~~D~~~l~-  133 (353)
                      .+.+|||..||+|....    ..+...|++.|+|+..++.++++    +                  +.+...|+..+. 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            45789999999998642    23445999999999999999876    2                  123334433222 


Q ss_pred             CCCCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          134 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       134 ~~~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      .....||+|..--    +.+   +..+|....+.++.||.|.++.
T Consensus       125 ~~~~~fDvIDiDP----fGs---~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDP----FGS---PMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECC----SSC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCCC----CCC---cHHHHHHHHHHhccCCEEEEEe
Confidence            2245799887753    334   4678999999999999999995

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.43  E-value=0.0026  Score=53.31  Aligned_cols=102  Identities=17%  Similarity=0.191  Sum_probs=69.0

Q ss_pred             hCCCCCCEEEEECCcccc-ccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC--------CCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGNGK-YLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY--------RSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~-~~~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~--------~~~~fD~Vi  143 (353)
                      ..+++|.+||-+|||... ++.    ......|+++|.++.-++.|++.+.+...-. ...++        ....+|+++
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~-~~~~~~~~i~~~t~g~g~D~vi   99 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLS-LDTPLHEQIAALLGEPEVDCAV   99 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETT-SSSCHHHHHHHHHSSSCEEEEE
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeC-CCcCHHHHHHHHhCCCCcEEEE
Confidence            478999999999999844 321    2444599999999999999999987665422 22111        234689988


Q ss_pred             echhhh------hcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          144 SIAVLH------HLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       144 ~~~vl~------h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      -.....      +..........+..+.++++|||++++.-.
T Consensus       100 d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2         100 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            643211      110000024689999999999999988743

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.40  E-value=0.0048  Score=49.89  Aligned_cols=94  Identities=21%  Similarity=0.295  Sum_probs=65.8

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeE-EEeeCCCCC----------CCCCCccEE
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEV-LVADAVNLP----------YRSDFGDAA  142 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~-~~~D~~~l~----------~~~~~fD~V  142 (353)
                      .++++.+||=+|||. |.++.   ...+++|+++|.++.-++.|++.+... +..+.....          .....+|+|
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v  102 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT  102 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence            578999999999995 33321   256789999999999999999986543 332222111          012457888


Q ss_pred             EechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          143 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       143 i~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      +-...     .    ...+..+.++|+|+|++++.-..
T Consensus       103 id~~g-----~----~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2         103 IDCSG-----N----EKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             EECSC-----C----HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             eecCC-----C----hHHHHHHHHHHhcCCceEEEecC
Confidence            76532     2    35788888999999999877543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.0013  Score=53.52  Aligned_cols=95  Identities=15%  Similarity=-0.015  Sum_probs=63.9

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC---CCCCCccEEEechhhh
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---YRSDFGDAAISIAVLH  149 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~---~~~~~fD~Vi~~~vl~  149 (353)
                      ..+++|.+||-+|+|. |.++.   ...|++|+++|.++..++.|++.+.+..........   -..+.||+++....-.
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~  102 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL  102 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence            4678999999999985 44332   256789999999999999999987654332111111   1235789888753222


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      +-       ..+....+.|+|+|++++.-
T Consensus       103 ~~-------~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         103 TD-------IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             TT-------CCTTTGGGGEEEEEEEEECC
T ss_pred             cc-------chHHHHHHHhhccceEEEec
Confidence            11       12445788999999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0059  Score=49.49  Aligned_cols=94  Identities=14%  Similarity=0.170  Sum_probs=67.7

Q ss_pred             CCCCCCEEEEECCccccccc----cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC---------CCCCCccEEE
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP---------YRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~---------~~~~~fD~Vi  143 (353)
                      .+.++.+||=+|||+...+.    ...++ .|+++|.++.-++.|++.+.+.....-...+         .....+|+|+
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi  102 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI  102 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence            67889999999999865432    23455 8999999999999999988765544322211         0124679888


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ...     ..    ...+....+.+++||++++.-..
T Consensus       103 d~~-----G~----~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2         103 ECT-----GA----EASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             ECS-----CC----HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             ecc-----CC----chhHHHHHHHhcCCCEEEEEecC
Confidence            753     22    35788899999999999887544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.02  E-value=0.0052  Score=50.39  Aligned_cols=92  Identities=14%  Similarity=0.170  Sum_probs=63.6

Q ss_pred             CCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-----------CCCCCccE
Q 018606           78 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP-----------YRSDFGDA  141 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-----------~~~~~fD~  141 (353)
                      .+++|.+||-+|||. |.++.   ...|+ .|+++|.++.-++.|++.+.+... |..+..           .....+|+
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~~~~~~~g~Dv  103 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTL-NRRETSVEERRKAIMDITHGRGADF  103 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred             CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEE-eccccchHHHHHHHHHhhCCCCceE
Confidence            467899999999985 44432   24565 899999999999999998764432 222211           11235899


Q ss_pred             EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      |+...     ..    ...+....+.|++||++++.-.
T Consensus       104 vid~v-----G~----~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2         104 ILEAT-----GD----SRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             EEECS-----SC----TTHHHHHHHHEEEEEEEEECCC
T ss_pred             EeecC-----Cc----hhHHHHHHHHhcCCCEEEEEee
Confidence            88653     22    2357888899999999877643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.98  E-value=0.005  Score=50.41  Aligned_cols=94  Identities=17%  Similarity=0.149  Sum_probs=65.2

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCc-EEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~-~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi  143 (353)
                      ..+.+|.+||=+|||. |.++.   ...++ .|+++|.++.-++.|++.+.+... |...-.        .....+|+||
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i-~~~~~~~~~~v~~~t~g~G~D~vi  101 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDIL-NYKNGHIEDQVMKLTNGKGVDRVI  101 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEE-CGGGSCHHHHHHHHTTTSCEEEEE
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccc-cccchhHHHHHHHHhhccCcceEE
Confidence            4788999999999986 54432   24554 799999999999999998754332 222211        1124589987


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ....     .    ...+.+..+.|+|+|++++.-+.
T Consensus       102 d~~g-----~----~~~~~~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2         102 MAGG-----G----SETLSQAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             ECSS-----C----TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             EccC-----C----HHHHHHHHHHHhcCCEEEEEeec
Confidence            7532     2    24577788999999999887543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.75  E-value=0.014  Score=47.18  Aligned_cols=102  Identities=16%  Similarity=0.203  Sum_probs=70.2

Q ss_pred             ChHHHHHHHhCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CC
Q 018606           68 KWPKVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YR  135 (353)
Q Consensus        68 ~~~~~~~~l~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-------~~  135 (353)
                      .|..+......++||.+||=+|+|....+.     ......|+++|.++.-++.+++.+.+... |...-+       ..
T Consensus        19 a~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i-~~~~~~~~~~~~~~~   97 (172)
T d1h2ba2          19 AYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVV-DARRDPVKQVMELTR   97 (172)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEE-ETTSCHHHHHHHHTT
T ss_pred             HHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceee-cCcccHHHHHHHhhC
Confidence            355555555567899999999998755432     23445899999999999999998654332 222211       12


Q ss_pred             CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          136 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       136 ~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ...+|+|+....     .    ...+....+.|++||++++.-.
T Consensus        98 ~~g~d~vid~~g-----~----~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2          98 GRGVNVAMDFVG-----S----QATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             TCCEEEEEESSC-----C----HHHHHHGGGGEEEEEEEEECCC
T ss_pred             CCCceEEEEecC-----c----chHHHHHHHHHhCCCEEEEEeC
Confidence            345888887532     2    3568889999999999988653

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=95.75  E-value=0.0098  Score=54.41  Aligned_cols=102  Identities=15%  Similarity=0.101  Sum_probs=67.4

Q ss_pred             CEEEEECCccccccc--------------------cCCCcEEEEEeCCHHHHHH-HHHc-------CCeE---EEeeCCC
Q 018606           83 SLVLDAGCGNGKYLG--------------------LNPDCFFVGCDISPSLIKI-CVDR-------GHEV---LVADAVN  131 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~--------------------~~~~~~v~gvD~S~~~l~~-a~~~-------~i~~---~~~D~~~  131 (353)
                      -+|+|+||..|..+-                    ..|..+|.--|+-.+=-.. .+..       +--|   +.+.+-.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            479999999998641                    1345677778875432211 1111       1122   2333434


Q ss_pred             CCCCCCCccEEEechhhhhcCC------------------------------hhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          132 LPYRSDFGDAAISIAVLHHLST------------------------------ESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       132 l~~~~~~fD~Vi~~~vl~h~~~------------------------------~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      --||+++.|++++..+|||++.                              ..+...+|+-=.+-|+|||+++++..+.
T Consensus       133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr  212 (359)
T d1m6ex_         133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred             hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence            3478999999999999999863                              0124567777788889999999999876


Q ss_pred             Ccc
Q 018606          182 EQE  184 (353)
Q Consensus       182 ~~~  184 (353)
                      ...
T Consensus       213 ~~~  215 (359)
T d1m6ex_         213 RSE  215 (359)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.019  Score=46.40  Aligned_cols=89  Identities=16%  Similarity=0.177  Sum_probs=64.1

Q ss_pred             CCCCCCEEEEECC-c-ccccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGC-G-NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGC-G-~G~~~---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+.+|.+||-.|+ | .|..+   ....++++++++.+++-++.+++.+.+.+. |..+..        .....+|+|+.
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi-~~~~~~~~~~i~~~t~~~g~d~v~d  103 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVF-NHREVNYIDKIKKYVGEKGIDIIIE  103 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE-ETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCccccc-ccccccHHHHhhhhhccCCceEEee
Confidence            5789999999997 3 34433   235678999999999999999988765443 333322        12456899987


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      ...          ...+....++|+|+|+++..
T Consensus       104 ~~g----------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         104 MLA----------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             SCH----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             ccc----------HHHHHHHHhccCCCCEEEEE
Confidence            532          24577788999999998876

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.41  E-value=0.016  Score=46.37  Aligned_cols=94  Identities=14%  Similarity=0.172  Sum_probs=65.9

Q ss_pred             hCCCCCCEEEEECCccccccc----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCCccEEEech
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIA  146 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~------~~~~~fD~Vi~~~  146 (353)
                      ..+.++.+||=.|||+-.++.    ...+.+|+++|.++.-++.+++.+.+.+........      ...+.+|+|++..
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  102 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV  102 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC
Confidence            367899999999998855432    256679999999999999999988776654333211      1233445554322


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                            .    ...+....+.|+|||++++.-..
T Consensus       103 ------~----~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2         103 ------S----KPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             ------C----HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             ------C----HHHHHHHHHHhccCCceEecccc
Confidence                  2    35688899999999998887543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.09  E-value=0.023  Score=45.98  Aligned_cols=92  Identities=11%  Similarity=0.103  Sum_probs=63.8

Q ss_pred             CCCCCCEEEEECCcccccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCe-EEEeeCCCC-----CCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHE-VLVADAVNL-----PYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~-----~~~~~~~v~gvD~S~~~l~~a~~~~i~-~~~~D~~~l-----~~~~~~fD~Vi~~~  146 (353)
                      .+++|.+||=+|||.-..+     .......++++|.++.-++.|++.+.. ++..+-.+.     .+.++.||+|+-..
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~  104 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST  104 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC
Confidence            5789999999999864432     123344788999999999999998753 433222111     12245789988642


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                           ..    ...+....++++|+|++++.-
T Consensus       105 -----G~----~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2         105 -----GS----PEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             -----CC----HHHHHHHHHTEEEEEEEEECC
T ss_pred             -----Cc----HHHHHHHHhcccCceEEEEEe
Confidence                 22    457788899999999998764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.65  E-value=0.03  Score=44.69  Aligned_cols=91  Identities=12%  Similarity=0.149  Sum_probs=61.2

Q ss_pred             hCCCCCCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCCccEEEec
Q 018606           77 NSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI  145 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-------~~~~~fD~Vi~~  145 (353)
                      ..+.+|.+||=+|||.-.++    ....+.+|+++|.++.-++.+++.+.+... |...-.       ...+.+++|++.
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~~~~i~~~  101 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTV-NARQEDPVEAIQRDIGGAHGVLVTA  101 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccc-cccchhHHHHHHHhhcCCccccccc
Confidence            36788999999999874332    124568999999999999999998764332 222211       112334444443


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ..          ...+....+.|+|||++++.-
T Consensus       102 ~~----------~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         102 VS----------NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             SC----------HHHHHHHHTTEEEEEEEEECC
T ss_pred             cc----------chHHHHHHHHhcCCcEEEEEE
Confidence            21          346788899999999988764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.45  E-value=0.031  Score=44.79  Aligned_cols=92  Identities=17%  Similarity=0.235  Sum_probs=63.8

Q ss_pred             CCCCCCEEEEECC-cc-cccc----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEE
Q 018606           78 SLPSGSLVLDAGC-GN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI  143 (353)
Q Consensus        78 ~l~~~~~VLDvGC-G~-G~~~----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi  143 (353)
                      .+.++.+||=+|| |. |.++    .......|+++|.++.-++.+++.+.+... |.....        ...+.||+|+
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~~~~~~~~~~~d~vi  102 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVI-NASMQDPLAEIRRITESKGVDAVI  102 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceee-ccCCcCHHHHHHHHhhcccchhhh
Confidence            5788999999997 43 3332    223446999999999999999998765433 222211        1235689988


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      ....     .    ...+....+.|+|||++++.-.
T Consensus       103 d~~g-----~----~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2         103 DLNN-----S----EKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             ESCC-----C----HHHHTTGGGGEEEEEEEEECCS
T ss_pred             cccc-----c----chHHHhhhhhcccCCEEEEecc
Confidence            7532     2    4567778899999999987743

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.016  Score=46.69  Aligned_cols=92  Identities=13%  Similarity=0.102  Sum_probs=63.7

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC---CCCCCCccEEEechhhh
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL---PYRSDFGDAAISIAVLH  149 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l---~~~~~~fD~Vi~~~vl~  149 (353)
                      ..+++|.+||=+|||. |.++.   ...++.++++|.++.-++.+++.+.+... |....   ....+.+|+++....  
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i-~~~~~~~~~~~~~~~D~vid~~g--  102 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVV-NSRNADEMAAHLKSFDFILNTVA--  102 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEE-ETTCHHHHHTTTTCEEEEEECCS--
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEE-ECchhhHHHHhcCCCceeeeeee--
Confidence            4688999999999986 43322   25678889999999988999988765433 22221   122356898887532  


Q ss_pred             hcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          150 HLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       150 h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                         .    ...+....+.|+++|++++.-
T Consensus       103 ---~----~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2         103 ---A----PHNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             ---S----CCCHHHHHTTEEEEEEEEECC
T ss_pred             ---c----chhHHHHHHHHhcCCEEEEec
Confidence               1    124667789999999998764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.22  E-value=0.12  Score=41.82  Aligned_cols=95  Identities=15%  Similarity=0.075  Sum_probs=66.3

Q ss_pred             hCCCCCCEEEEECCcc-ccccc---cCCC-cEEEEEeCCHHHHHHHHHcCCeEEEeeCC-CCC-------CCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGN-GKYLG---LNPD-CFFVGCDISPSLIKICVDRGHEVLVADAV-NLP-------YRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~-G~~~~---~~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~D~~-~l~-------~~~~~fD~Vi  143 (353)
                      ..+++|.+||=+|||. |.++.   ...+ ..|+.+|.++.-++.|++.+.+....... +..       ...+.+|+++
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vi  103 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSL  103 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEE
Confidence            4678999999999998 54432   2334 48999999999999999997654432111 111       1235689887


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccC-cEEEEEEcC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~~~  180 (353)
                      -..     ..    ...+.+..+.|++| |++++.-+.
T Consensus       104 e~~-----G~----~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2         104 DCA-----GT----AQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             ESS-----CC----HHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             Eec-----cc----chHHHHHHHHhhcCCeEEEecCCC
Confidence            753     22    46789999999996 999887543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.14  E-value=0.13  Score=41.59  Aligned_cols=93  Identities=9%  Similarity=0.059  Sum_probs=59.9

Q ss_pred             CCCCCCEEEEECCccccccc----cCCC-cEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CC-------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~~----~~~~-~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l~-------~~~~~fD~Vi~  144 (353)
                      .+++|.+||=+|||...++.    ...+ .+|+++|.+++-++.|++.+.+.....-.. ..       .....+|+++-
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~  105 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFE  105 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEE
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEE
Confidence            57899999999999765432    2344 699999999999999999976554321111 11       12346787776


Q ss_pred             chhhhhcCChhHHHHHHHHHHh-ccccCcEEEEEEc
Q 018606          145 IAVLHHLSTESRRKKAIEELVR-VVKKGSLVLITVW  179 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~r-vLkpgG~lli~~~  179 (353)
                      ...     .    ...+..... +++.+|++++.-.
T Consensus       106 ~~g-----~----~~~~~~a~~~~~~~~G~~v~vG~  132 (176)
T d1d1ta2         106 VIG-----H----LETMIDALASCHMNYGTSVVVGV  132 (176)
T ss_dssp             CSC-----C----HHHHHHHHTTSCTTTCEEEECSC
T ss_pred             eCC-----c----hHHHHHHHHHhhcCCeEEEEEEc
Confidence            532     2    233444444 4456688887753

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.53  E-value=0.16  Score=41.01  Aligned_cols=90  Identities=14%  Similarity=0.066  Sum_probs=64.6

Q ss_pred             CCCCCCEEEEECCccccc--c---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCCccEEEec
Q 018606           78 SLPSGSLVLDAGCGNGKY--L---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI  145 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~--~---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~-------~~~~~fD~Vi~~  145 (353)
                      .+++|.+||=.|++.|.-  +   ....+++|++++.+++-++.+++.+.+.+...-....       .....+|+|+..
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~  105 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDN  105 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEe
Confidence            578999999888876552  2   2366789999999999999999987655432211111       123568998875


Q ss_pred             hhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          146 AVLHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       146 ~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      -.          .+.++++.++|+++|+++++
T Consensus       106 vG----------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2         106 VG----------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             SC----------HHHHHHHGGGEEEEEEEEEC
T ss_pred             cC----------chhhhhhhhhccCCCeEEee
Confidence            32          24678899999999998876

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.25  E-value=0.1  Score=41.74  Aligned_cols=92  Identities=7%  Similarity=-0.016  Sum_probs=65.0

Q ss_pred             CCCCCCEEEEECCcccc--cc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC--------CCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGK--YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY--------RSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~--~~---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~--------~~~~fD~Vi~  144 (353)
                      .+++|.+||=.|+|.|.  ++   ....+++|++++.|+.-++.+++.+.+.+. |..+-.+        ....+|+|+.
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi-~~~~~d~~~~v~~~t~g~g~d~v~d  103 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVI-NYREEDLVERLKEITGGKKVRVVYD  103 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEE-ECCCCCHHHHHHHHhCCCCeEEEEe
Confidence            57889999999777644  32   235678999999999999999998765433 4333221        2456898877


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      ...-          ..+......|+++|++++....
T Consensus       104 ~~g~----------~~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2         104 SVGR----------DTWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             CSCG----------GGHHHHHHTEEEEEEEEECCCT
T ss_pred             CccH----------HHHHHHHHHHhcCCeeeecccc
Confidence            5421          2467788899999998776443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.05  E-value=0.2  Score=40.22  Aligned_cols=95  Identities=12%  Similarity=0.096  Sum_probs=62.2

Q ss_pred             hCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-eCCCCC-------CCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNLP-------YRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l~-------~~~~~fD~Vi  143 (353)
                      ..+++|.+||=+|||...++.     ......|+++|.++.-++.|++.+.+.... .-.+..       ...+.+|+|+
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vi  102 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAV  102 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEE
Confidence            358899999999999765432     233358999999999999999997654431 111111       1234578887


Q ss_pred             echhhhhcCChhHHHHHHHHHHhcccc-CcEEEEEEcC
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKK-GSLVLITVWA  180 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkp-gG~lli~~~~  180 (353)
                      -...     .    ...+......+++ +|.+++.-..
T Consensus       103 d~~g-----~----~~~~~~~~~~~~~~~G~~v~vG~~  131 (174)
T d1p0fa2         103 ECAG-----R----IETMMNALQSTYCGSGVTVVLGLA  131 (174)
T ss_dssp             ECSC-----C----HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             EcCC-----C----chHHHHHHHHHHHhcCceEEEEEe
Confidence            6432     2    3456666666655 5888877543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.01  E-value=0.18  Score=40.15  Aligned_cols=93  Identities=17%  Similarity=0.131  Sum_probs=62.8

Q ss_pred             hCCCCCCEEEEECCcccccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CC-------CCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-------YRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~-----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~-l~-------~~~~~fD~Vi  143 (353)
                      ..++||.+||=.|||....+     .......|+++|.++.-++.+++.+.+........ .+       ...+.+|+|+
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vi  103 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSF  103 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEee
Confidence            35789999999999843332     12334589999999999999999876544322111 11       1134689988


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ....     .    ..+++....++++||.+++..
T Consensus       104 d~~G-----~----~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2         104 ECIG-----N----VKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             ECSC-----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred             ecCC-----C----HHHHHHHHHhhcCCceeEEEE
Confidence            7532     2    356788889999998876554

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.66  E-value=0.079  Score=47.35  Aligned_cols=51  Identities=20%  Similarity=0.107  Sum_probs=41.8

Q ss_pred             CCCEEEEECCcccccccc---C-CCcEEEEEeCCHHHHHHHHHc----CCeEEEeeCCC
Q 018606           81 SGSLVLDAGCGNGKYLGL---N-PDCFFVGCDISPSLIKICVDR----GHEVLVADAVN  131 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~~~~---~-~~~~v~gvD~S~~~l~~a~~~----~i~~~~~D~~~  131 (353)
                      .+..|||||.|.|.++..   . ...+++++|+.+.+++..+++    ++.++.+|+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            467899999999998753   1 224899999999999998876    58899999875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.19  E-value=0.33  Score=38.60  Aligned_cols=92  Identities=12%  Similarity=0.067  Sum_probs=61.5

Q ss_pred             CCCCCCEEEEECCcccccc-----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCC--CC------CCCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV--NL------PYRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~~~-----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~--~l------~~~~~~fD~Vi~  144 (353)
                      .+++|.+||=+|+|.+..+     .......|+++|.++.-++.+++.+.........  +.      ....+.+|+|+.
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid  104 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE  104 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEe
Confidence            5889999999999865532     2255579999999999999999997654433221  11      022356899887


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccC-cEEEEEE
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV  178 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpg-G~lli~~  178 (353)
                      ....         ...+......++++ |.+++..
T Consensus       105 ~~G~---------~~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2         105 VIGR---------LDTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             CSCC---------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             cCCc---------hhHHHHHHHHHhcCCcceEEec
Confidence            5432         34566667778776 5555443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=90.60  E-value=0.29  Score=38.50  Aligned_cols=84  Identities=17%  Similarity=0.167  Sum_probs=55.5

Q ss_pred             EEEEECCcc-cc-ccc--cCCCcEEEEEeCCHHHHHHHHHcCC-eEEEeeCCCCCCCCCCccEEEechhhhhcCChhHHH
Q 018606           84 LVLDAGCGN-GK-YLG--LNPDCFFVGCDISPSLIKICVDRGH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK  158 (353)
Q Consensus        84 ~VLDvGCG~-G~-~~~--~~~~~~v~gvD~S~~~l~~a~~~~i-~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~~~  158 (353)
                      +|.=||+|. |. ++.  ...+..|++.|++++.++.+++.++ .....+...+    ...|+|+..-     + .....
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIilav-----p-~~~~~   71 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLCT-----P-IQLIL   71 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEECS-----C-HHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccc----cccccccccC-----c-Hhhhh
Confidence            577789985 33 222  2567899999999999999988864 3332232222    3458887642     2 23367


Q ss_pred             HHHHHHHhccccCcEEEEEE
Q 018606          159 KAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       159 ~~l~el~rvLkpgG~lli~~  178 (353)
                      .+++++...|+++-.+ +.+
T Consensus        72 ~vl~~l~~~l~~~~iv-~~~   90 (165)
T d2f1ka2          72 PTLEKLIPHLSPTAIV-TDV   90 (165)
T ss_dssp             HHHHHHGGGSCTTCEE-EEC
T ss_pred             hhhhhhhhhcccccce-eec
Confidence            8899999888887654 443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.45  E-value=0.47  Score=37.27  Aligned_cols=86  Identities=17%  Similarity=0.152  Sum_probs=56.2

Q ss_pred             EEEEECCcc-ccccc-----cCCCcEEEEEeCCHHHHHHHHHcCC-eEEEeeCCCCCCCCCCccEEEechhhhhcCChhH
Q 018606           84 LVLDAGCGN-GKYLG-----LNPDCFFVGCDISPSLIKICVDRGH-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR  156 (353)
Q Consensus        84 ~VLDvGCG~-G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~~i-~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~~e~  156 (353)
                      .|+=||||. |..+.     .....+|+|+|.++..++.|++.++ .....+....  .....|+|+...-      ...
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~dlIila~p------~~~   74 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKV--EDFSPDFVMLSSP------VRT   74 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGG--GGTCCSEEEECSC------HHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhh--hccccccccccCC------chh
Confidence            577899997 54322     2345699999999999999999864 2233332222  2335688887542      222


Q ss_pred             HHHHHHHHHhccccCcEEEEEE
Q 018606          157 RKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       157 ~~~~l~el~rvLkpgG~lli~~  178 (353)
                      ....+.++...++++.. ++.+
T Consensus        75 ~~~vl~~l~~~~~~~~i-i~d~   95 (171)
T d2g5ca2          75 FREIAKKLSYILSEDAT-VTDQ   95 (171)
T ss_dssp             HHHHHHHHHHHSCTTCE-EEEC
T ss_pred             hhhhhhhhhcccccccc-cccc
Confidence            56788999999988744 4443

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=89.93  E-value=0.13  Score=44.78  Aligned_cols=42  Identities=14%  Similarity=0.130  Sum_probs=36.9

Q ss_pred             CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606           79 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      -.+|..|||.=||+|..+.  ...+-..+|+|+++..++.|++|
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~R  291 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFR  291 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGG
T ss_pred             ccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHH
Confidence            4688999999999999754  46778999999999999999987

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.64  E-value=0.24  Score=39.52  Aligned_cols=89  Identities=17%  Similarity=0.067  Sum_probs=62.1

Q ss_pred             CCCCCCEEEEECC-c-cccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCCccEEEe
Q 018606           78 SLPSGSLVLDAGC-G-NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS  144 (353)
Q Consensus        78 ~l~~~~~VLDvGC-G-~G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~--------~~~~~fD~Vi~  144 (353)
                      .+.+|.+||=.|. | .|.++.   ...++.+++++.+++-++.+++.+.+.+. |.....        .....||+|+.
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi-~~~~~~~~~~v~~~t~~~g~d~v~d  100 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVG-DSRSVDFADEILELTDGYGVDVVLN  100 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEE-ETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccc-cCCccCHHHHHHHHhCCCCEEEEEe
Confidence            5788999998874 3 244432   25678999999999889999988766543 333222        12356999998


Q ss_pred             chhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          145 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       145 ~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      ...     .     ..+..+.++|+++|+++..
T Consensus       101 ~~g-----~-----~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_         101 SLA-----G-----EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             CCC-----T-----HHHHHHHHTEEEEEEEEEC
T ss_pred             ccc-----c-----hHHHHHHHHhcCCCEEEEE
Confidence            542     2     3567788999999998775

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.52  E-value=0.098  Score=41.99  Aligned_cols=90  Identities=14%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             hCCCCCCEEEEECC-cc-cccc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC---CCCCCccEEEechhh
Q 018606           77 NSLPSGSLVLDAGC-GN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---YRSDFGDAAISIAVL  148 (353)
Q Consensus        77 ~~l~~~~~VLDvGC-G~-G~~~---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~---~~~~~fD~Vi~~~vl  148 (353)
                      ..+.+|.+||=.|. |. |.++   ....|++|++++.++.-++.+++.+.+... |..+..   -....+|+|+.... 
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~g~D~v~d~~G-  100 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAA-TYAEVPERAKAWGGLDLVLEVRG-  100 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEE-EGGGHHHHHHHTTSEEEEEECSC-
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceee-ehhhhhhhhhccccccccccccc-
Confidence            46789999999885 43 3332   235678999999999989999988765443 332211   11246899987421 


Q ss_pred             hhcCChhHHHHHHHHHHhccccCcEEEEEE
Q 018606          149 HHLSTESRRKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       149 ~h~~~~e~~~~~l~el~rvLkpgG~lli~~  178 (353)
                          .      .+....+.|+|+|+++++-
T Consensus       101 ----~------~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2         101 ----K------EVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             ----T------THHHHHTTEEEEEEEEEC-
T ss_pred             ----h------hHHHHHHHHhcCCcEEEEe
Confidence                1      2466788999999988763

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.41  E-value=0.46  Score=37.58  Aligned_cols=92  Identities=14%  Similarity=0.085  Sum_probs=60.1

Q ss_pred             hCCCCCCEEEEECCccccccc-----cCCCcEEEEEeCCHHHHHHHHHcCCeEEEe-eCCCCC-------CCCCCccEEE
Q 018606           77 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNLP-------YRSDFGDAAI  143 (353)
Q Consensus        77 ~~l~~~~~VLDvGCG~G~~~~-----~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~-D~~~l~-------~~~~~fD~Vi  143 (353)
                      ..+++|.+||=+|||.+..+.     ......|+++|.++.-++.|++.+.+...- .-....       .....+|+|+
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vi  103 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSL  103 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceee
Confidence            368899999999999866532     255569999999999999999997644332 111111       1124578887


Q ss_pred             echhhhhcCChhHHHHHHHHHHhccccCcEEEEE
Q 018606          144 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT  177 (353)
Q Consensus       144 ~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~  177 (353)
                      -...     .    ..++......+++||..++.
T Consensus       104 d~~G-----~----~~~~~~a~~~~~~g~~~~~~  128 (175)
T d1cdoa2         104 ECVG-----N----VGVMRNALESCLKGWGVSVL  128 (175)
T ss_dssp             ECSC-----C----HHHHHHHHHTBCTTTCEEEE
T ss_pred             eecC-----C----HHHHHHHHHHhhCCCcceeE
Confidence            6542     2    34566667777666444443

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=89.39  E-value=0.11  Score=44.75  Aligned_cols=70  Identities=16%  Similarity=0.124  Sum_probs=50.1

Q ss_pred             CEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc----------------CCeEEEeeCCC-CCCCCCCccEEE
Q 018606           83 SLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----------------GHEVLVADAVN-LPYRSDFGDAAI  143 (353)
Q Consensus        83 ~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~----------------~i~~~~~D~~~-l~~~~~~fD~Vi  143 (353)
                      .+|||.-||.|..+.  ...|++|+++|.++.+....+..                +++++.+|..+ +.-....||+|+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIY  169 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEEE
Confidence            489999999999542  24578999999999765443321                47899999765 332356799999


Q ss_pred             echhhhhcC
Q 018606          144 SIAVLHHLS  152 (353)
Q Consensus       144 ~~~vl~h~~  152 (353)
                      .--.+.+-.
T Consensus       170 lDPMFp~~~  178 (250)
T d2oyra1         170 LDPMFPHKQ  178 (250)
T ss_dssp             ECCCCCCCC
T ss_pred             ECCCCcccc
Confidence            877765543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.84  E-value=1.2  Score=33.30  Aligned_cols=85  Identities=18%  Similarity=0.134  Sum_probs=57.2

Q ss_pred             CEEEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCC----CCCCCccEEEechhhhhcCC
Q 018606           83 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLP----YRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        83 ~~VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~-~i~~~~~D~~~l~----~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      ++|+=+|+|. |..+.   ...+..|+.+|.+++.++.+.+. ++.++.+|..+..    ..-...|++++.     ..+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t~~   75 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----TGK   75 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----CSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----CCc
Confidence            3678888875 55432   25678999999999999888765 8899999988732    222456888774     233


Q ss_pred             hhHHHHHHHHHHhccccCcE
Q 018606          154 ESRRKKAIEELVRVVKKGSL  173 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~  173 (353)
                      .+ ....+..+.+.+.+.-.
T Consensus        76 d~-~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          76 EE-VNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             HH-HHHHHHHHHHHTTCCCE
T ss_pred             HH-HHHHHHHHHHHcCCceE
Confidence            32 33455556677777633

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=86.57  E-value=0.14  Score=41.91  Aligned_cols=97  Identities=22%  Similarity=0.223  Sum_probs=64.0

Q ss_pred             CCEEEEECCcccccc----ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-------------C--CC-------
Q 018606           82 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-------------P--YR-------  135 (353)
Q Consensus        82 ~~~VLDvGCG~G~~~----~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l-------------~--~~-------  135 (353)
                      ..+||=||+|.-.+.    ....|+.|+++|.++..++..++.+-.|+..+....             .  +.       
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l  108 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV  108 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHH
Confidence            469999999985542    236788999999999999999988655543221110             0  00       


Q ss_pred             ---CCCccEEEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          136 ---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       136 ---~~~fD~Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                         -...|+||....+..-+.   +.-+-+++.+.+|||..+  .+.+.++
T Consensus       109 ~~~l~~aDlVI~talipG~~a---P~lit~~mv~~Mk~GSVI--VDvaidq  154 (183)
T d1l7da1         109 LKELVKTDIAITTALIPGKPA---PVLITEEMVTKMKPGSVI--IDLAVEA  154 (183)
T ss_dssp             HHHHTTCSEEEECCCCTTSCC---CCCSCHHHHTTSCTTCEE--EETTGGG
T ss_pred             HHHHHhhhhheeeeecCCccc---ceeehHHHHHhcCCCcEE--EEEeecC
Confidence               124699998776655444   344567888999998754  4555554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=85.92  E-value=0.36  Score=40.32  Aligned_cols=41  Identities=24%  Similarity=0.321  Sum_probs=35.8

Q ss_pred             CCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606           80 PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        80 ~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      .+|..|||.=||+|..+.  ...+-..+|+|+++.-++.|++|
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~R  253 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFV  253 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence            688999999999999653  46678999999999999999875

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.52  E-value=0.38  Score=38.80  Aligned_cols=92  Identities=12%  Similarity=0.080  Sum_probs=64.5

Q ss_pred             CCCCCCEEEEECCcccc--cc---ccCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCC------CCCCCCccEEEech
Q 018606           78 SLPSGSLVLDAGCGNGK--YL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------PYRSDFGDAAISIA  146 (353)
Q Consensus        78 ~l~~~~~VLDvGCG~G~--~~---~~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l------~~~~~~fD~Vi~~~  146 (353)
                      .+++|.+||=-|++-|.  ++   ....+++|+++-.|++-++.+++.+.+... |-...      ....+.+|+|+-.-
T Consensus        28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi-~~~~~~~~~~~~~~~~gvD~vid~v  106 (176)
T d1xa0a2          28 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVL-AREDVMAERIRPLDKQRWAAAVDPV  106 (176)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEE-ECC---------CCSCCEEEEEECS
T ss_pred             CCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceee-ecchhHHHHHHHhhccCcCEEEEcC
Confidence            46678899998876554  32   236788999999999999999998655433 22211      12356799887753


Q ss_pred             hhhhcCChhHHHHHHHHHHhccccCcEEEEEEcC
Q 018606          147 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA  180 (353)
Q Consensus       147 vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~  180 (353)
                      .     .     ..+....++|+|||+++++-..
T Consensus       107 g-----g-----~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         107 G-----G-----RTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             T-----T-----TTHHHHHHTEEEEEEEEECSCC
T ss_pred             C-----c-----hhHHHHHHHhCCCceEEEeecc
Confidence            2     1     3578889999999999887654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=84.24  E-value=0.092  Score=42.40  Aligned_cols=98  Identities=16%  Similarity=0.092  Sum_probs=65.4

Q ss_pred             CCCEEEEECCccccc-c---ccCCCcEEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCCccEEEechhhhhcCC
Q 018606           81 SGSLVLDAGCGNGKY-L---GLNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST  153 (353)
Q Consensus        81 ~~~~VLDvGCG~G~~-~---~~~~~~~v~gvD~S~~~l~~a~~~---~i~~~~~D~~~l~~~~~~fD~Vi~~~vl~h~~~  153 (353)
                      +..+|+=||+|.-.+ +   ...-++.|+.+|.+...++..+..   .+++...+-..+.-.-...|+||....+---+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a  110 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA  110 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc
Confidence            347999999997543 2   236788999999999998877765   455554443333211235699999876544443


Q ss_pred             hhHHHHHHHHHHhccccCcEEEEEEcCCCc
Q 018606          154 ESRRKKAIEELVRVVKKGSLVLITVWAVEQ  183 (353)
Q Consensus       154 ~e~~~~~l~el~rvLkpgG~lli~~~~~~~  183 (353)
                         +.-+-+++.+.+|||..+  .+.+.++
T Consensus       111 ---P~lIt~~mv~~Mk~GSVI--VDvaidq  135 (168)
T d1pjca1         111 ---PILVPASLVEQMRTGSVI--VDVAVDQ  135 (168)
T ss_dssp             ---CCCBCHHHHTTSCTTCEE--EETTCTT
T ss_pred             ---CeeecHHHHhhcCCCcEE--EEeecCC
Confidence               344567888999998653  4555554

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=82.60  E-value=0.37  Score=40.85  Aligned_cols=56  Identities=18%  Similarity=0.068  Sum_probs=37.3

Q ss_pred             EEEeeCCCC--CCCCCCccEEEechh----hhh----cCChhHHHHHHHHHHhccccCcEEEEEEc
Q 018606          124 VLVADAVNL--PYRSDFGDAAISIAV----LHH----LSTESRRKKAIEELVRVVKKGSLVLITVW  179 (353)
Q Consensus       124 ~~~~D~~~l--~~~~~~fD~Vi~~~v----l~h----~~~~e~~~~~l~el~rvLkpgG~lli~~~  179 (353)
                      |+++|...+  .++++++|+|+..--    ...    ..-.+.....+.++.|+|||||.+++...
T Consensus         7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_           7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            566777653  367889999988321    111    01112256778999999999999998753

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=81.59  E-value=6.1  Score=33.97  Aligned_cols=97  Identities=10%  Similarity=0.059  Sum_probs=66.0

Q ss_pred             CEEEEECCcccccc-c--cCCCcEEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCC--------CCCCCCccE
Q 018606           83 SLVLDAGCGNGKYL-G--LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNL--------PYRSDFGDA  141 (353)
Q Consensus        83 ~~VLDvGCG~G~~~-~--~~~~~~v~gvD~S~~~l~~a~~~----------~i~~~~~D~~~l--------~~~~~~fD~  141 (353)
                      ..|+.+|||-=.-. +  ..++..++=+|. +.+++.-++.          ...++..|+..-        .+..+.--+
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl  169 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  169 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence            45667999965432 2  246678999995 6666543332          235666776641        123344457


Q ss_pred             EEechhhhhcCChhHHHHHHHHHHhccccCcEEEEEEcCC
Q 018606          142 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV  181 (353)
Q Consensus       142 Vi~~~vl~h~~~~e~~~~~l~el~rvLkpgG~lli~~~~~  181 (353)
                      +++-+++.+++..+ ...+|+.+.....||..+++.....
T Consensus       170 ~i~EGvl~YL~~~~-~~~ll~~i~~~~~~GS~l~~d~~~~  208 (297)
T d2uyoa1         170 WLAEGLLMYLPATA-QDGLFTEIGGLSAVGSRIAVETSPL  208 (297)
T ss_dssp             EEECSCGGGSCHHH-HHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             EEEccccccCCHHH-HHHHHHHHHHhCCCCCEEEEEeccc
Confidence            77888899888655 8899999999999999988876543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=81.20  E-value=1.2  Score=33.19  Aligned_cols=88  Identities=10%  Similarity=0.059  Sum_probs=55.7

Q ss_pred             EEEECCcc-ccccc---cCCCcEEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCC----CCCCccEEEechhhhhcCChhH
Q 018606           85 VLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPY----RSDFGDAAISIAVLHHLSTESR  156 (353)
Q Consensus        85 VLDvGCG~-G~~~~---~~~~~~v~gvD~S~~~l~~a~~~~i~~~~~D~~~l~~----~~~~fD~Vi~~~vl~h~~~~e~  156 (353)
                      ++=+|+|. |..+.   ...+..|+.+|.++..++.++..+..++.+|..+...    .-...|++++.     +++.+ 
T Consensus         3 ~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~-----~~~~~-   76 (134)
T d2hmva1           3 FAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVA-----IGANI-   76 (134)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEEC-----CCSCH-
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEE-----cCchH-
Confidence            45567775 44432   2567899999999999999988888999999887541    11345766654     22222 


Q ss_pred             HHHHHHHHHhccccCcEEEEEE
Q 018606          157 RKKAIEELVRVVKKGSLVLITV  178 (353)
Q Consensus       157 ~~~~l~el~rvLkpgG~lli~~  178 (353)
                      -...+..+.+.+.+...++.-.
T Consensus        77 ~~~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          77 QASTLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEC
T ss_pred             HhHHHHHHHHHHcCCCcEEeec
Confidence            2334444444455666655544

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.66  E-value=0.33  Score=41.14  Aligned_cols=42  Identities=21%  Similarity=0.206  Sum_probs=36.1

Q ss_pred             CCCCCEEEEECCccccccc--cCCCcEEEEEeCCHHHHHHHHHc
Q 018606           79 LPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR  120 (353)
Q Consensus        79 l~~~~~VLDvGCG~G~~~~--~~~~~~v~gvD~S~~~l~~a~~~  120 (353)
                      -.+|..|||.=||+|..+.  ...+-+.+|+|+++...+.|++|
T Consensus       205 s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~R  248 (279)
T d1eg2a_         205 SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQ  248 (279)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHH
T ss_pred             cCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHH
Confidence            3689999999999999653  35567999999999999999987