Citrus Sinensis ID: 018622

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
MFVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI
Secondary Structure (PSIPRED)
cEEEcccccccccccccccccHHHHHHcHHHHHccccccccEEEEEcccccccccHHHHHHHHHHccccEEEEEEEEcccccccccEEEEcccccEEEEEEcccccccccccccccccccccccccccccEEEcccEEEcHHHHHHHHHccccccccccccHHHHccccccEEEEcccccccccccHHHHHHHccccccccccccccccccccccccccccccEEcccEEEEEEEcccEEEcccEEEEEEEccccEEccccEEEcEEEEcccccccHHHHHHHHHcccccEEEccccEEEcEEEccccEEccccEEcccccccccccccccEEEEccEEEEccccEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEHccHHHHHHHHHHccccEEEEEEEccHHHHHHccEEEEccccEEEEEEEccccHHHHHcccccccccccHHHHcccccEEEEEEEEEcHHHHHHHHHHccccccccHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccccccEEEEEEEcccEEEEccEEEEEEEEEEEEEcccEEEEcEEEEcccccccHHHHHHHHHcccccEEEccccEEEEEEEEcccEccccEEEEccccccccccccccEEEEccEEEEEcccEcccccEc
Coil and Loop (DISEMBL)
mfvlaatqtpgesgknwfQGTADAVRQFTWVFEDaknrnienvAILCGDHLYRMDYMDFIQshvdrdaditiscaavgesrasdyglvkidnmgriaqfaekpsganlkAMQVdtsllgfspqearkcpyvasmgvYVFKKDVLFKLLRwryptsndfgseiipaaiMEHDVQAYIFRDYWEDIGTIKSFYEANMaltkespafhfydpktpfytsprflpptkidncrikdaiishgcflrectvehsivgersrldygvelKDTVMLGADYYQTESEIASLLAegkvpigvgrntkirnciidknvkigkdVVIVnkddvqeadrpelgfYIRSGITIIMEKatiedgmvi
Flexible Loop (DISEMBL)
mfvlaatqtpgesgknwfqGTADAVRQFTWVFedaknrnieNVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAvgesrasdygLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSivgersrldygvELKDTVMLGADYYQTESEIASLlaegkvpigvgrntkirnciidknvkigkdvvivnkddvqeadrpelgfyirsgitiimekatiedgmvi
Low Complexity Region (SEG)
MFVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI
Disordered region (IsUnstruct)
***************NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE******LKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI******
Disordered Region (DISOPRED)
MFVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGAN*****************ARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI
Disordered Region (DISEMBL)
***********ESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI
Disordered Region (DISPRO)
MFVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIED*MVI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
Q00081	470	Glucose-1-phosphate adeny	N/A	no	0.994	0.746	0.800	1e-173
Q9SIK1	523	Probable glucose-1-phosph	yes	no	0.994	0.671	0.763	1e-167
P55231	521	Glucose-1-phosphate adeny	no	no	0.994	0.673	0.754	1e-164
P55230	518	Glucose-1-phosphate adeny	no	no	0.994	0.677	0.717	1e-158
P55233	522	Glucose-1-phosphate adeny	N/A	no	0.994	0.672	0.712	1e-156
P55242	519	Glucose-1-phosphate adeny	N/A	no	0.991	0.674	0.720	1e-153
P12299	522	Glucose-1-phosphate adeny	N/A	no	0.991	0.670	0.670	1e-144
P55229	522	Glucose-1-phosphate adeny	no	no	0.994	0.672	0.663	1e-143
P30524	523	Glucose-1-phosphate adeny	N/A	no	0.991	0.669	0.667	1e-143
P55243	483	Glucose-1-phosphate adeny	N/A	no	0.994	0.726	0.650	1e-138

>sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1

 Score =  608 bits (1567), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 281/351 (80%), Positives = 318/351 (90%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGE+GK WFQGTADAVR+F WVFEDAKN+NIEN+ +L GDHLYRMDYM+ +Q+
Sbjct: 120 VLAATQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENIVVLSGDHLYRMDYMELVQN 179

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H+DR+ADIT+SCA   +SRASD+GLVKID+ GR+ QFAEKP G +LKAMQVDT+L+G SP
Sbjct: 180 HIDRNADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSP 239

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           Q+A+K PY+ASMGVYVFK DVL KLL+W YPTSNDFGSEIIPAAI +++VQAYIF+DYWE
Sbjct: 240 QDAKKSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWE 299

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIKSFY A++ALT+E P F FYDPKTPFYTSPRFLPPTKIDNC+IKDAIISHGCFLR
Sbjct: 300 DIGTIKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLR 359

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           +C+VEHSIVGERSRLD GVELKDT M+GADYYQTESEIASLLAEGKVPIG+G NTKIR C
Sbjct: 360 DCSVEHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKC 419

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGK+V I+NKD VQEADRPE GFYIRSGI II+EKATI DG VI
Sbjct: 420 IIDKNAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIILEKATIRDGTVI 470

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.
Solanum tuberosum (taxid: 4113)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7

>sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1

 Score =  587 bits (1514), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 268/351 (76%), Positives = 311/351 (88%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+QS
Sbjct: 173 VLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENILILSGDHLYRMNYMDFVQS 232

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           HVD +ADIT+SCA V ESRAS++GLVKID  GR+  F+EKP+G +LK+MQ DT++LG S 
Sbjct: 233 HVDSNADITLSCAPVSESRASNFGLVKIDRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSH 292

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           QEA   PY+ASMGVY FK + L  LL  +YP+SNDFGSE+IPAAI +HDVQ YIFRDYWE
Sbjct: 293 QEATDSPYIASMGVYCFKTEALLNLLTRQYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWE 352

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIK+FYEAN+AL +E P F FYDP+TPFYTSPRFLPPTK + CR+ D+IISHGCFLR
Sbjct: 353 DIGTIKTFYEANLALVEERPKFEFYDPETPFYTSPRFLPPTKAEKCRMVDSIISHGCFLR 412

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           EC+V+ SI+GERSRLDYGVEL+DT+MLGADYYQTESEIASLLAEGKVPIG+G++TKIR C
Sbjct: 413 ECSVQRSIIGERSRLDYGVELQDTLMLGADYYQTESEIASLLAEGKVPIGIGKDTKIRKC 472

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGK+V+I+NK DVQEADRPE GFYIRSGIT+I+EKATI+DG VI
Sbjct: 473 IIDKNAKIGKNVIIMNKGDVQEADRPEEGFYIRSGITVIVEKATIQDGTVI 523

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 7

>sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2

 Score =  578 bits (1489), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 265/351 (75%), Positives = 306/351 (87%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+Q 
Sbjct: 171 VLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQH 230

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           HVD  ADIT+SCA V ESRAS+YGLV ID  GR+  F+EKP+G +LK+MQ DT++ G S 
Sbjct: 231 HVDSKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSH 290

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           QEA K PY+ASMGVY FK + L KLL WRYP+SNDFGSEIIPAAI +H+VQ YI+RDYWE
Sbjct: 291 QEAAKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWE 350

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIKSFYEAN+AL +E P F FYD  TPFYTSPRFLPPTK + CRI +++ISHGCFL 
Sbjct: 351 DIGTIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLG 410

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           EC+++ SI+GERSRLDYGVEL+DT+MLGAD YQTESEIASLLAEG VPIG+GR+TKIR C
Sbjct: 411 ECSIQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTKIRKC 470

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGK+VVI+NKDDV+EADRPE GFYIRSGIT+++EKATI+DG VI
Sbjct: 471 IIDKNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 7

>sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2

 Score =  559 bits (1441), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 252/351 (71%), Positives = 307/351 (87%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQT G++GK WFQGTADAVRQF WVFEDAK +N+E+V IL GDHLYRMDYM+F+Q 
Sbjct: 168 VLAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQK 227

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H++ +ADIT+SC  + ESRASD+GL+KID  G+I QF+EKP G +LKAMQVDTS+LG  P
Sbjct: 228 HIESNADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPP 287

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           +EA + PY+ASMGVYVF+K+VL KLLR  YPTSNDFGSEIIP A+ EH+VQA++F DYWE
Sbjct: 288 KEAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWE 347

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTI SF++AN+ALT++ P F FYD KTPF+TSPRFLPPTK+D CRI D+I+SHGCFLR
Sbjct: 348 DIGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPPTKVDKCRILDSIVSHGCFLR 407

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           EC+V+HSIVG RSRL+ GVEL+DT+M+GAD+YQTE+EIASLLAEGKVP+GVG+NTKI+NC
Sbjct: 408 ECSVQHSIVGIRSRLESGVELQDTMMMGADFYQTEAEIASLLAEGKVPVGVGQNTKIKNC 467

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGK+VVI N D V+E DRPE GF+IRSGIT++++ ATI DG+ I
Sbjct: 468 IIDKNAKIGKNVVIANADGVEEGDRPEEGFHIRSGITVVLKNATIRDGLHI 518

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 7

>sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1

 Score =  551 bits (1420), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 250/351 (71%), Positives = 303/351 (86%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           V AATQTPGESGK WFQGTADAVRQF W FED+K++++E++ IL GDHLYRMDYM F Q 
Sbjct: 172 VFAATQTPGESGKKWFQGTADAVRQFFWAFEDSKSKDVEHIVILSGDHLYRMDYMSFWQK 231

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H+D +ADIT+SC  + +SRASDYGL+KID+ GRI  FAEKP G++L AMQVDT++LG S 
Sbjct: 232 HIDTNADITVSCIPMDDSRASDYGLMKIDHTGRIVHFAEKPKGSDLTAMQVDTTVLGLSD 291

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
            EA   PY+ASMGVYVF+ DVL +LL  +YP+SNDFGSEIIP+A+ E +VQAY+F DYWE
Sbjct: 292 LEAMSNPYIASMGVYVFRTDVLMELLNRKYPSSNDFGSEIIPSAVGESNVQAYLFNDYWE 351

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIKSF+++N+ALT++ P F FYDPKTPFYTS RFLPPTK+D C+I D+I+SHGCFL+
Sbjct: 352 DIGTIKSFFDSNLALTQQPPKFEFYDPKTPFYTSARFLPPTKVDRCKIVDSIVSHGCFLQ 411

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           E +++HSIVG RSRL+ GVE +DT+M+GADYYQTESEIASLLAEGKVP+GVG+NTKI+NC
Sbjct: 412 ESSIQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPVGVGQNTKIKNC 471

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGKDVVI N D V+EADRP  GFYIRSGITII++ ATI+DG+VI
Sbjct: 472 IIDKNAKIGKDVVIANTDGVEEADRPNEGFYIRSGITIILKNATIQDGLVI 522

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.

Beta vulgaris (taxid: 161934)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 7

>sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1

 Score =  541 bits (1393), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 253/351 (72%), Positives = 295/351 (84%), Gaps = 1/351 (0%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLA TQTPG+  K WFQ  ADAVR+F WVFE+ KN+N+E++ IL GDHLYRM+YMDF+Q 
Sbjct: 170 VLAGTQTPGDGRKMWFQA-ADAVREFIWVFENQKNKNVEHIIILSGDHLYRMNYMDFVQK 228

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H+D +ADIT+SC  + + RASD+GL+KID  G I QFAEKP G  LKAMQVDTS+LG S 
Sbjct: 229 HIDTNADITVSCVPMDDGRASDFGLMKIDETGAIIQFAEKPKGPALKAMQVDTSILGLSE 288

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           QEA   PY+ASMGVYVFK DVL  LL+  YP+ NDFGSEIIP+A+ +H+VQAY+F DYWE
Sbjct: 289 QEASNFPYIASMGVYVFKTDVLLNLLKSAYPSCNDFGSEIIPSAVKDHNVQAYLFNDYWE 348

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGT+KSF++AN+ALTK+ P F F DPKTPFYTS RFLPPTK+D  RI DAIISHGCFLR
Sbjct: 349 DIGTVKSFFDANLALTKQPPKFDFNDPKTPFYTSARFLPPTKVDKSRIVDAIISHGCFLR 408

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           EC ++HSIVG RSRLDYGVE KDT+M+GADYYQTE EIASLLAEGKVPIGVG NTKI+NC
Sbjct: 409 ECNIQHSIVGVRSRLDYGVEFKDTMMMGADYYQTECEIASLLAEGKVPIGVGPNTKIQNC 468

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGKDVVI+NK+ V+EADR   GFYIRSGIT+IM+ ATI+DG VI
Sbjct: 469 IIDKNAKIGKDVVILNKEGVEEADRSAEGFYIRSGITVIMKNATIKDGTVI 519

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 7

>sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2

 Score =  509 bits (1312), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 236/352 (67%), Positives = 291/352 (82%), Gaps = 2/352 (0%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDHLYRMDYMDFIQ 61
           VLAATQ PGE+   WF+GTADAVR+F WV ED  KN++IE++ IL GD LYRMDYM+ +Q
Sbjct: 172 VLAATQMPGEAA-GWFRGTADAVRKFIWVLEDYYKNKSIEHILILSGDQLYRMDYMELVQ 230

Query: 62  SHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFS 121
            HVD +ADIT+SCA VGESRAS+YGLVK D+ GR+ QF+EKP G +L+AM+VDTS L F+
Sbjct: 231 KHVDDNADITLSCAPVGESRASEYGLVKFDSSGRVVQFSEKPKGDDLEAMKVDTSFLNFA 290

Query: 122 PQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYW 181
             +  K PY+ASMGVYVFK+DVL  LL+ RY   +DFGSEI+P A+ +H+VQAY+F DYW
Sbjct: 291 IDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYW 350

Query: 182 EDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFL 241
           EDIGTI+SF++ANMAL ++ P F FYDPKTPF+TSPR+LPPTK D CRIK+AIISHGCFL
Sbjct: 351 EDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFL 410

Query: 242 RECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 301
           REC +EHSI+G RSRL+ G ELK+ +M+GAD Y+TE EI+ L++EGKVPIGVG NTKI N
Sbjct: 411 RECKIEHSIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKISN 470

Query: 302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           CIID N +IG+DVVI NK+ VQEADRPE G+YIRSGI +I + ATI+DG V+
Sbjct: 471 CIIDMNARIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 522

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.

Triticum aestivum (taxid: 4565)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 7

>sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3

 Score =  507 bits (1305), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 233/351 (66%), Positives = 287/351 (81%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGESGK WFQGTADAVRQF W+FEDA++++IE+V IL GDHLYRMDYMDFIQ 
Sbjct: 172 VLAATQTPGESGKRWFQGTADAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYMDFIQD 231

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H    ADI+ISC  + + RASD+GL+KID+ GR+  F+EKP G +LKAM VDT++LG S 
Sbjct: 232 HRQSGADISISCIPIDDRRASDFGLMKIDDKGRVISFSEKPKGDDLKAMAVDTTILGLSK 291

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           +EA K PY+ASMGVYVFKK++L  LLRWR+PT+NDFGSEIIP +  E  V AY+F DYWE
Sbjct: 292 EEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPFSAKEFYVNAYLFNDYWE 351

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTI+SF+EAN+ALT+   AF FYD   P YTS R LPP+KIDN ++ D+IISHG FL 
Sbjct: 352 DIGTIRSFFEANLALTEHPGAFSFYDAAKPIYTSRRNLPPSKIDNSKLIDSIISHGSFLT 411

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
            C +EHSIVG RSR+   V+LKDTVMLGADYY+TE+E+A+LLAEG VPIG+G NTKI+ C
Sbjct: 412 NCLIEHSIVGIRSRVGSNVQLKDTVMLGADYYETEAEVAALLAEGNVPIGIGENTKIQEC 471

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN ++GK+V+I N + +QEADR   GFYIRSGIT+I++ + I+DG+VI
Sbjct: 472 IIDKNARVGKNVIIANSEGIQEADRSSDGFYIRSGITVILKNSVIKDGVVI 522

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 7

>sp|P30524|GLGL1_HORVU Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2

 Score =  506 bits (1304), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 235/352 (66%), Positives = 291/352 (82%), Gaps = 2/352 (0%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDHLYRMDYMDFIQ 61
           VLAATQ PGE+   WF+GTADAVR+F WV ED  K+++IE++ IL GD LYRMDYM+ +Q
Sbjct: 173 VLAATQMPGEAA-GWFRGTADAVRKFIWVLEDYYKHKSIEHILILSGDQLYRMDYMELVQ 231

Query: 62  SHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFS 121
            HVD +ADIT+SCA VGESRAS+YGLVK D+ GR+ QF+EKP G +L+AM+VDTS L F+
Sbjct: 232 KHVDDNADITLSCAPVGESRASEYGLVKFDSSGRVIQFSEKPKGDDLEAMKVDTSFLNFA 291

Query: 122 PQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYW 181
             +  K PY+ASMGVYVFK+DVL  LL+ RY   +DFGSEI+P A+ +H+VQAY+F DYW
Sbjct: 292 IDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYW 351

Query: 182 EDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFL 241
           EDIGTI+SF++ANMAL ++ P F FYDPKTPF+TSPR+LPPTK D CRIK+AIISHGCFL
Sbjct: 352 EDIGTIRSFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFL 411

Query: 242 RECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 301
           REC +EHSI+G RSRL+ G ELK+ +M+GAD Y+TE EI+ L++EGKVPIGVG NTKI N
Sbjct: 412 RECKIEHSIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKISN 471

Query: 302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           CIID N +IG+DVVI NK+ VQEADRPE G+YIRSGI +I + ATI+DG V+
Sbjct: 472 CIIDMNARIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 523

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 7

>sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1

 Score =  490 bits (1262), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 229/352 (65%), Positives = 283/352 (80%), Gaps = 1/352 (0%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGE GK WFQGTA AVRQF W+FEDA++++IE+V IL GDHLYRMDY+ F+QS
Sbjct: 132 VLAATQTPGELGKRWFQGTAHAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYLHFVQS 191

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H    ADITIS   + +SRASD+GL+KID+ GR+  F+EKP G +LKAM VDT++LG SP
Sbjct: 192 HRQSGADITISSLPIDDSRASDFGLMKIDDTGRVMSFSEKPKGDDLKAMAVDTTVLGLSP 251

Query: 123 QEARKCPYVASMG-VYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYW 181
           +EA++ PY+AS+G VYVFKKD+L  LLRWR+PT+NDFGSEIIPA+  E  V+AY+F DYW
Sbjct: 252 EEAKEKPYIASIGKVYVFKKDILLNLLRWRFPTANDFGSEIIPASTKEFCVKAYLFNDYW 311

Query: 182 EDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFL 241
           EDIGTI+SF+ AN+ALT+  P F FYD   P YTS R LPP+ IDN +I D+I+SHG FL
Sbjct: 312 EDIGTIRSFFRANLALTEHPPRFSFYDATKPIYTSRRNLPPSAIDNSKIVDSIVSHGIFL 371

Query: 242 RECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 301
             C VEHS+VG RSR+   V LKDTVMLGADYY+T++EI S LAEGKVP+G+G NT+I++
Sbjct: 372 TNCFVEHSVVGIRSRIGTNVHLKDTVMLGADYYETDAEIRSQLAEGKVPLGIGENTRIKD 431

Query: 302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           CIIDKN +IGK+VVI N + VQEADR   GFY+ SGIT+I + +TI DG VI
Sbjct: 432 CIIDKNARIGKNVVIANSEGVQEADRSSEGFYMASGITVISKNSTIPDGTVI 483

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
194595409	527	ADP-glucose pyrophosphorylase large subu	0.994	0.666	0.988	0.0
5917791	531	ADP-glucose pyrophosphorylase large subu	0.994	0.661	0.958	0.0
255543725	531	glucose-1-phosphate adenylyltransferase,	0.994	0.661	0.849	0.0
356545193	528	PREDICTED: glucose-1-phosphate adenylylt	0.994	0.664	0.843	1e-179
356508352	519	PREDICTED: glucose-1-phosphate adenylylt	0.994	0.676	0.834	1e-178
356538761	530	PREDICTED: glucose-1-phosphate adenylylt	0.994	0.662	0.831	1e-176
356517038	519	PREDICTED: glucose-1-phosphate adenylylt	0.994	0.676	0.831	1e-176
224080375	526	predicted protein [Populus trichocarpa]	0.994	0.667	0.834	1e-176
224103389	527	predicted protein [Populus trichocarpa]	0.994	0.666	0.823	1e-175
357473317	528	Glucose-1-phosphate adenylyltransferase	0.994	0.664	0.814	1e-174

>gi|194595409|gb|ACF77017.1| ADP-glucose pyrophosphorylase large subunit [Citrus sinensis]

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/351 (98%), Positives = 349/351 (99%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS
Sbjct: 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 236

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP
Sbjct: 237 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 296

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           QEARKCPYVASMGVYVFKKDVL KLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE
Sbjct: 297 QEARKCPYVASMGVYVFKKDVLLKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 356

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCR+KDAIISHGCFLR
Sbjct: 357 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRMKDAIISHGCFLR 416

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           ECTVEHSIVGERSR+DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC
Sbjct: 417 ECTVEHSIVGERSRIDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 476

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKNVKIGKDVVIVNKD VQEADRPELGFYIRSGITIIMEKATIEDGMVI
Sbjct: 477 IIDKNVKIGKDVVIVNKDGVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5917791|gb|AAD56042.1|AF184598_1 ADP-glucose pyrophosphorylase large subunit [Citrus unshiu]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/359 (95%), Positives = 347/359 (96%), Gaps = 8/359 (2%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--------YRM 54
           VLAATQTPGESGKNWFQGTADAV +FTWVFEDAKNRNIENVAILCGDHL        YRM
Sbjct: 173 VLAATQTPGESGKNWFQGTADAVTRFTWVFEDAKNRNIENVAILCGDHLSILCGDHLYRM 232

Query: 55  DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVD 114
           DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVD
Sbjct: 233 DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVD 292

Query: 115 TSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQA 174
           TSLLGFSPQEARK PYVASMGVYVFKKDVL KLLRWRYPTSNDFGSEIIPAAIMEHDVQA
Sbjct: 293 TSLLGFSPQEARKSPYVASMGVYVFKKDVLLKLLRWRYPTSNDFGSEIIPAAIMEHDVQA 352

Query: 175 YIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAI 234
           YIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCR+KDAI
Sbjct: 353 YIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRMKDAI 412

Query: 235 ISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 294
           ISHGCFLRECTVEHSIVGERSR+DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG
Sbjct: 413 ISHGCFLRECTVEHSIVGERSRIDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 472

Query: 295 RNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           RNTKIRNCIIDKNVKIGKDVVIVNKD VQEADRPELGFYIRSGITIIMEKATIEDGMVI
Sbjct: 473 RNTKIRNCIIDKNVKIGKDVVIVNKDGVQEADRPELGFYIRSGITIIMEKATIEDGMVI 531

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543725|ref|XP_002512925.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] gi|223547936|gb|EEF49428.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/351 (84%), Positives = 323/351 (92%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGE+G NWFQGTADAVRQFTWVFEDAKNRN+EN+ IL GDHLYRMDYMDF+Q 
Sbjct: 181 VLAATQTPGEAGMNWFQGTADAVRQFTWVFEDAKNRNVENILILSGDHLYRMDYMDFVQH 240

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           HVD +ADITISCAAVGESRASDYGLVKID+ GRI  FAEKP GA LK+++ DT+ LG SP
Sbjct: 241 HVDSNADITISCAAVGESRASDYGLVKIDSRGRIVHFAEKPGGAELKSLKADTTQLGLSP 300

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           Q+A K PY+ASMGVYVF+ ++L KLLRWR+PTSNDFGSEIIPAA+MEH++Q+Y FRDYWE
Sbjct: 301 QDALKSPYIASMGVYVFRTEILLKLLRWRFPTSNDFGSEIIPAAVMEHNIQSYNFRDYWE 360

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIKSFYEAN+ALT+E P F FYDPKTPFYTSPRFLPPTKID CRI DAIISHGCFLR
Sbjct: 361 DIGTIKSFYEANLALTEEPPTFEFYDPKTPFYTSPRFLPPTKIDKCRIVDAIISHGCFLR 420

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           ECTV HS+VGERSRLDYGVELKDTVMLGADYYQTE+EIASLLAEGKVPIGVGRNTKI+NC
Sbjct: 421 ECTVRHSVVGERSRLDYGVELKDTVMLGADYYQTETEIASLLAEGKVPIGVGRNTKIKNC 480

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGKDVVIVNKD VQEADRPE GFYIRSGITIIMEKATIEDG VI
Sbjct: 481 IIDKNAKIGKDVVIVNKDGVQEADRPEEGFYIRSGITIIMEKATIEDGTVI 531

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545193|ref|XP_003541029.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max]

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 296/351 (84%), Positives = 323/351 (92%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQT GE+GKNWFQGTADAVRQFTWVFEDAK+ NIENV IL GDHLYRMDYMD +QS
Sbjct: 178 VLAATQTQGETGKNWFQGTADAVRQFTWVFEDAKHTNIENVLILAGDHLYRMDYMDLVQS 237

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           HVDR+ADIT+SCAAVGESRASDYGLVK D  GRI QF+EKP GA+LKAMQVDTS+LG  P
Sbjct: 238 HVDRNADITVSCAAVGESRASDYGLVKADGRGRIIQFSEKPKGADLKAMQVDTSVLGLPP 297

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
            EA++ PY+ASMGVYVFK DVL KLL+WRYPTSNDFGSEIIPAA+ E++VQAY F DYWE
Sbjct: 298 HEAKRSPYIASMGVYVFKTDVLLKLLKWRYPTSNDFGSEIIPAAVRENNVQAYFFNDYWE 357

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIKSFY+AN+ALT+E+P F FYDPKTP YTSPRFLPPTKID CRI DAIISHGCFLR
Sbjct: 358 DIGTIKSFYDANLALTEENPMFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLR 417

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           ECTV+HSIVGERSRLDYGVEL+DTVM+GADYYQTESEIASLLAEGKVPIG+GRNTKIRNC
Sbjct: 418 ECTVQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNC 477

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGKDV+I+NKD VQEADRPE GFYIRSGIT+I+EKATIEDG VI
Sbjct: 478 IIDKNAKIGKDVIIMNKDGVQEADRPEDGFYIRSGITVILEKATIEDGTVI 528

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508352|ref|XP_003522921.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 293/351 (83%), Positives = 320/351 (91%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGE+GKNWFQGTADAVRQFTWVFEDAKN N+ENV IL GDHLYRMDYMD +QS
Sbjct: 169 VLAATQTPGEAGKNWFQGTADAVRQFTWVFEDAKNTNVENVLILAGDHLYRMDYMDLVQS 228

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           HVDR+ADIT+SCAAVG+SRASDYGLVK+D+ GRI QF+EKP+G +LKAMQ DTSLLG SP
Sbjct: 229 HVDRNADITVSCAAVGDSRASDYGLVKVDDRGRIIQFSEKPNGDDLKAMQADTSLLGLSP 288

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           Q+A K PY+ASMGVYVFK DVL  LL+WRYPTSNDFGSEIIPAA+ +HDVQ+Y F DYWE
Sbjct: 289 QDALKSPYIASMGVYVFKTDVLLNLLKWRYPTSNDFGSEIIPAAVRDHDVQSYFFEDYWE 348

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIKSFY+AN+ALT+ES  F FYDPK P YTSP FLPPTKID C+I DAIISHGCFLR
Sbjct: 349 DIGTIKSFYDANLALTEESHKFEFYDPKIPIYTSPGFLPPTKIDKCQIVDAIISHGCFLR 408

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           ECTV+HSIVGERSRLDYGVEL DTVM+GADYYQTESEIASLLAEGKVPIG+GRNTKIRNC
Sbjct: 409 ECTVQHSIVGERSRLDYGVELLDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNC 468

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGKDV+I NKD VQEADRPE GFYIRSGITIIMEKATIEDG ++
Sbjct: 469 IIDKNAKIGKDVIIANKDGVQEADRPEDGFYIRSGITIIMEKATIEDGTIV 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538761|ref|XP_003537869.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/351 (83%), Positives = 322/351 (91%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQT GE+G NWFQGTADAVRQFTWVFEDAK+ NIENV IL GDHLYRM+YMD +QS
Sbjct: 180 VLAATQTQGEAGNNWFQGTADAVRQFTWVFEDAKHANIENVLILAGDHLYRMNYMDLVQS 239

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           HVDR+ADIT+SCAAVGESRASDYGLVK D  GRI QF+EKP+GA+LKAMQVDTS+LG   
Sbjct: 240 HVDRNADITVSCAAVGESRASDYGLVKADARGRIIQFSEKPNGADLKAMQVDTSVLGLPL 299

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
            EA++ PY+ASMGVYVFK DVL +LL+WRYPTSNDFGSEIIPAA+ E++VQAY F DYWE
Sbjct: 300 HEAKRSPYIASMGVYVFKTDVLLRLLKWRYPTSNDFGSEIIPAAVRENNVQAYFFIDYWE 359

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIKSFY+AN+ALT+E+P F FYDPKTP YTSPRFLPPTKID CRI DAIISHGCFLR
Sbjct: 360 DIGTIKSFYDANLALTEENPMFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLR 419

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           ECTV+HSIVGERSRLDYGVEL+DTVM+GADYYQTESEIASLLAEGKVPIG+GRNTKIRNC
Sbjct: 420 ECTVQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNC 479

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGKDV+I+NKD VQEADRPE GFYIRSGIT+I+EKATIEDG VI
Sbjct: 480 IIDKNAKIGKDVIIMNKDGVQEADRPEDGFYIRSGITVILEKATIEDGTVI 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517038|ref|XP_003527197.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/351 (83%), Positives = 317/351 (90%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGE+GKNWFQGTADAVRQFTWVFEDAKN N+ENV IL GDHLYRMDYMD +QS
Sbjct: 169 VLAATQTPGEAGKNWFQGTADAVRQFTWVFEDAKNTNVENVLILAGDHLYRMDYMDLVQS 228

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           HVDR+ADIT+SCAAVG+SRASDYGLVK+D+ GRI QF+EKP G +LKAMQ DTSLLG S 
Sbjct: 229 HVDRNADITVSCAAVGDSRASDYGLVKVDDRGRIIQFSEKPKGDDLKAMQADTSLLGLSS 288

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           Q+A + PY+ASMGVYVFK DVL  LL+WRYPTSNDFGSEIIPAA+ +H+VQ+Y F DYWE
Sbjct: 289 QDALESPYIASMGVYVFKTDVLLNLLKWRYPTSNDFGSEIIPAAVRDHNVQSYFFGDYWE 348

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIKSFY AN+ALT+ES  F FYDPK P YTSP FLPPTKID CRI DAIISHGCFLR
Sbjct: 349 DIGTIKSFYNANLALTEESHKFEFYDPKIPIYTSPGFLPPTKIDKCRIVDAIISHGCFLR 408

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           ECTV+HSIVGERSRLDYGVE+ DTVM+GADYYQTESEIASLLAEGKVPIG+GRNTKIRNC
Sbjct: 409 ECTVQHSIVGERSRLDYGVEVLDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNC 468

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGKDV+I NKD VQEADRPE GFYIRSGITIIMEKATIEDG VI
Sbjct: 469 IIDKNAKIGKDVIIANKDGVQEADRPEDGFYIRSGITIIMEKATIEDGTVI 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080375|ref|XP_002306116.1| predicted protein [Populus trichocarpa] gi|222849080|gb|EEE86627.1| predicted protein [Populus trichocarpa]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 293/351 (83%), Positives = 318/351 (90%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGE+G  WFQGTADAVRQFTWVFEDAKNR+IEN+ IL GDHLYRMDYMDF+Q 
Sbjct: 176 VLAATQTPGEAGMKWFQGTADAVRQFTWVFEDAKNRSIENILILSGDHLYRMDYMDFVQH 235

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           HVD +ADITISC AVGESRASDYGLVKID+ G+I QF EKP G+ L+ MQVDT+ LG SP
Sbjct: 236 HVDSNADITISCVAVGESRASDYGLVKIDSKGQIFQFTEKPKGSELREMQVDTTHLGLSP 295

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           Q+A K  Y+ASMGVYVFK D+L KLLRWR+PTSNDFGSEIIPAA+MEH+VQAYIF+DYWE
Sbjct: 296 QDALKSSYIASMGVYVFKTDILLKLLRWRFPTSNDFGSEIIPAAVMEHNVQAYIFKDYWE 355

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIKSFYEAN+AL +E P F FYDPKTPFYTSP FLPPTKID CRI DAIISHGCFLR
Sbjct: 356 DIGTIKSFYEANLALAEEPPKFEFYDPKTPFYTSPGFLPPTKIDKCRIVDAIISHGCFLR 415

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           ECTV+HS+VGERSRLDYGVELKDTVMLGAD+YQTE+EIASLLAEGKVPIGVGRNTKIRNC
Sbjct: 416 ECTVQHSVVGERSRLDYGVELKDTVMLGADHYQTEAEIASLLAEGKVPIGVGRNTKIRNC 475

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGKDV+I NKD VQEADR E GFYIRSGITII+EKATIEDG VI
Sbjct: 476 IIDKNAKIGKDVIITNKDGVQEADREEKGFYIRSGITIILEKATIEDGTVI 526

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103389|ref|XP_002313036.1| predicted protein [Populus trichocarpa] gi|222849444|gb|EEE86991.1| predicted protein [Populus trichocarpa]

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 289/351 (82%), Positives = 316/351 (90%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGE+G  WFQGTADAVRQFTWVFEDAKNRNIEN+ +L GDHLYRMDYMDF+Q 
Sbjct: 177 VLAATQTPGEAGMKWFQGTADAVRQFTWVFEDAKNRNIENILVLSGDHLYRMDYMDFVQH 236

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H+D +AD TISCAAVGESRASDYGLVKID  G++ QFAEKP G+ L+ M+VDT+ LG SP
Sbjct: 237 HIDSNADFTISCAAVGESRASDYGLVKIDGRGQVFQFAEKPKGSELREMRVDTTRLGLSP 296

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           Q+A K PY+ASMGVYVFK D+L KLLRWRYPT+NDFGSEIIPAA+MEH+VQAYIF+DYWE
Sbjct: 297 QDAMKSPYIASMGVYVFKTDILLKLLRWRYPTANDFGSEIIPAAVMEHNVQAYIFKDYWE 356

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIKSFYEAN+AL +E P F FYDPKTPFYTSPRF PPTK D CRI +AIISHGCFLR
Sbjct: 357 DIGTIKSFYEANLALAEEPPKFEFYDPKTPFYTSPRFSPPTKFDKCRIVNAIISHGCFLR 416

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           ECTV+HS+VGERSRLDYGVELKDTVMLGAD YQTE EIASLLAEG+VPIGVGRNTKIRNC
Sbjct: 417 ECTVQHSVVGERSRLDYGVELKDTVMLGADCYQTEVEIASLLAEGEVPIGVGRNTKIRNC 476

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN KIGKDV+I+NKD VQEADR E GFYIRSGITII EKATIEDG VI
Sbjct: 477 IIDKNAKIGKDVIIMNKDGVQEADREEEGFYIRSGITIISEKATIEDGTVI 527

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473317|ref|XP_003606943.1| Glucose-1-phosphate adenylyltransferase [Medicago truncatula] gi|355507998|gb|AES89140.1| Glucose-1-phosphate adenylyltransferase [Medicago truncatula]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 286/351 (81%), Positives = 320/351 (91%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGE+GKNWFQGTADAVRQFTWVFEDAKN NIENV IL GDHLYRMDYMD +QS
Sbjct: 178 VLAATQTPGEAGKNWFQGTADAVRQFTWVFEDAKNTNIENVIILAGDHLYRMDYMDLVQS 237

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H+DR+ADIT+SCAAVG+SRASDYGLVK+D+ GRI QF+EKP GA+LK+MQ DTSL G S 
Sbjct: 238 HIDRNADITVSCAAVGDSRASDYGLVKVDSGGRIIQFSEKPKGADLKSMQADTSLFGLSN 297

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           Q+A + PY+ASMGVYVFK DVL KLL+WRYPTSNDFGSEIIPA++ E++VQA+ F DYWE
Sbjct: 298 QDALRSPYIASMGVYVFKTDVLLKLLKWRYPTSNDFGSEIIPASVKEYNVQAFFFGDYWE 357

Query: 183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
           DIGTIKSFY+ANMALT+ESP F FYDPKTP +TSP FLPPTKID CRI DAIISHGCFLR
Sbjct: 358 DIGTIKSFYDANMALTEESPMFKFYDPKTPIFTSPGFLPPTKIDKCRIVDAIISHGCFLR 417

Query: 243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
           EC+V+HSIVGERSRLDYGVEL+DTVM+GADYYQTESEIAS LAEGKVPIG+G N+K+R C
Sbjct: 418 ECSVQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASELAEGKVPIGIGSNSKVRKC 477

Query: 303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
           IIDKN +IGKDV+I+NKD VQEADRPE GFYIRSGITI+MEKATIEDG VI
Sbjct: 478 IIDKNARIGKDVIIMNKDGVQEADRPEDGFYIRSGITIVMEKATIEDGTVI 528

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2049364	523	APL4 [Arabidopsis thaliana (ta	0.994	0.671	0.763	1.1e-149
TAIR|locus:2136358	521	APL3 [Arabidopsis thaliana (ta	0.994	0.673	0.754	9e-148
TAIR|locus:2199241	518	APL2 "ADPGLC-PPase large subun	0.994	0.677	0.717	1.4e-142
TAIR|locus:2182132	522	APL1 "ADP glucose pyrophosphor	0.994	0.672	0.663	4e-129
TAIR|locus:2156263	520	ADG1 "ADP glucose pyrophosphor	0.980	0.665	0.509	8.4e-97
UNIPROTKB|P15280	514	AGPS "Glucose-1-phosphate aden	0.980	0.673	0.501	5.3e-95
TAIR|locus:2032003	476	APS2 "AT1G05610" [Arabidopsis	0.943	0.699	0.381	3.6e-57
TIGR_CMR|SO_1498	420	SO_1498 "glucose-1-phosphate a	0.838	0.704	0.341	9.2e-36
UNIPROTKB|Q9KLP4	407	glgC2 "Glucose-1-phosphate ade	0.756	0.656	0.313	1.8e-32
TIGR_CMR|VC_A0699	407	VC_A0699 "glucose-1-phosphate	0.756	0.656	0.313	1.8e-32

TAIR|locus:2049364 APL4 [Arabidopsis thaliana (taxid:3702)]

 Score = 1461 (519.4 bits), Expect = 1.1e-149, P = 1.1e-149
 Identities = 268/351 (76%), Positives = 311/351 (88%)

Query:     3 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
             VLAATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+QS
Sbjct:   173 VLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENILILSGDHLYRMNYMDFVQS 232

Query:    63 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
             HVD +ADIT+SCA V ESRAS++GLVKID  GR+  F+EKP+G +LK+MQ DT++LG S 
Sbjct:   233 HVDSNADITLSCAPVSESRASNFGLVKIDRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSH 292

Query:   123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
             QEA   PY+ASMGVY FK + L  LL  +YP+SNDFGSE+IPAAI +HDVQ YIFRDYWE
Sbjct:   293 QEATDSPYIASMGVYCFKTEALLNLLTRQYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWE 352

Query:   183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
             DIGTIK+FYEAN+AL +E P F FYDP+TPFYTSPRFLPPTK + CR+ D+IISHGCFLR
Sbjct:   353 DIGTIKTFYEANLALVEERPKFEFYDPETPFYTSPRFLPPTKAEKCRMVDSIISHGCFLR 412

Query:   243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
             EC+V+ SI+GERSRLDYGVEL+DT+MLGADYYQTESEIASLLAEGKVPIG+G++TKIR C
Sbjct:   413 ECSVQRSIIGERSRLDYGVELQDTLMLGADYYQTESEIASLLAEGKVPIGIGKDTKIRKC 472

Query:   303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
             IIDKN KIGK+V+I+NK DVQEADRPE GFYIRSGIT+I+EKATI+DG VI
Sbjct:   473 IIDKNAKIGKNVIIMNKGDVQEADRPEEGFYIRSGITVIVEKATIQDGTVI 523

GO:0008878 "glucose-1-phosphate adenylyltransferase activity" evidence=IEA;ISS;IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0010170 "glucose-1-phosphate adenylyltransferase complex" evidence=IDA

GO:0019252 "starch biosynthetic process" evidence=RCA;TAS

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2136358 APL3 [Arabidopsis thaliana (taxid:3702)]

 Score = 1443 (513.0 bits), Expect = 9.0e-148, P = 9.0e-148
 Identities = 265/351 (75%), Positives = 306/351 (87%)

Query:     3 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
             VLAATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+Q 
Sbjct:   171 VLAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQH 230

Query:    63 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
             HVD  ADIT+SCA V ESRAS+YGLV ID  GR+  F+EKP+G +LK+MQ DT++ G S 
Sbjct:   231 HVDSKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSH 290

Query:   123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
             QEA K PY+ASMGVY FK + L KLL WRYP+SNDFGSEIIPAAI +H+VQ YI+RDYWE
Sbjct:   291 QEAAKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWE 350

Query:   183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
             DIGTIKSFYEAN+AL +E P F FYD  TPFYTSPRFLPPTK + CRI +++ISHGCFL 
Sbjct:   351 DIGTIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLG 410

Query:   243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
             EC+++ SI+GERSRLDYGVEL+DT+MLGAD YQTESEIASLLAEG VPIG+GR+TKIR C
Sbjct:   411 ECSIQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTKIRKC 470

Query:   303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
             IIDKN KIGK+VVI+NKDDV+EADRPE GFYIRSGIT+++EKATI+DG VI
Sbjct:   471 IIDKNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521

GO:0008878 "glucose-1-phosphate adenylyltransferase activity" evidence=IEA;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009853 "photorespiration" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA;TAS

TAIR|locus:2199241 APL2 "ADPGLC-PPase large subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
 Identities = 252/351 (71%), Positives = 307/351 (87%)

Query:     3 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
             VLAATQT G++GK WFQGTADAVRQF WVFEDAK +N+E+V IL GDHLYRMDYM+F+Q 
Sbjct:   168 VLAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQK 227

Query:    63 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
             H++ +ADIT+SC  + ESRASD+GL+KID  G+I QF+EKP G +LKAMQVDTS+LG  P
Sbjct:   228 HIESNADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPP 287

Query:   123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
             +EA + PY+ASMGVYVF+K+VL KLLR  YPTSNDFGSEIIP A+ EH+VQA++F DYWE
Sbjct:   288 KEAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWE 347

Query:   183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
             DIGTI SF++AN+ALT++ P F FYD KTPF+TSPRFLPPTK+D CRI D+I+SHGCFLR
Sbjct:   348 DIGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPPTKVDKCRILDSIVSHGCFLR 407

Query:   243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
             EC+V+HSIVG RSRL+ GVEL+DT+M+GAD+YQTE+EIASLLAEGKVP+GVG+NTKI+NC
Sbjct:   408 ECSVQHSIVGIRSRLESGVELQDTMMMGADFYQTEAEIASLLAEGKVPVGVGQNTKIKNC 467

Query:   303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
             IIDKN KIGK+VVI N D V+E DRPE GF+IRSGIT++++ ATI DG+ I
Sbjct:   468 IIDKNAKIGKNVVIANADGVEEGDRPEEGFHIRSGITVVLKNATIRDGLHI 518

GO:0008878 "glucose-1-phosphate adenylyltransferase activity" evidence=IEA;ISS;IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0019252 "starch biosynthetic process" evidence=TAS

TAIR|locus:2182132 APL1 "ADP glucose pyrophosphorylase large subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
 Identities = 233/351 (66%), Positives = 287/351 (81%)

Query:     3 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
             VLAATQTPGESGK WFQGTADAVRQF W+FEDA++++IE+V IL GDHLYRMDYMDFIQ 
Sbjct:   172 VLAATQTPGESGKRWFQGTADAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYMDFIQD 231

Query:    63 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
             H    ADI+ISC  + + RASD+GL+KID+ GR+  F+EKP G +LKAM VDT++LG S 
Sbjct:   232 HRQSGADISISCIPIDDRRASDFGLMKIDDKGRVISFSEKPKGDDLKAMAVDTTILGLSK 291

Query:   123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
             +EA K PY+ASMGVYVFKK++L  LLRWR+PT+NDFGSEIIP +  E  V AY+F DYWE
Sbjct:   292 EEAEKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPFSAKEFYVNAYLFNDYWE 351

Query:   183 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 242
             DIGTI+SF+EAN+ALT+   AF FYD   P YTS R LPP+KIDN ++ D+IISHG FL 
Sbjct:   352 DIGTIRSFFEANLALTEHPGAFSFYDAAKPIYTSRRNLPPSKIDNSKLIDSIISHGSFLT 411

Query:   243 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 302
              C +EHSIVG RSR+   V+LKDTVMLGADYY+TE+E+A+LLAEG VPIG+G NTKI+ C
Sbjct:   412 NCLIEHSIVGIRSRVGSNVQLKDTVMLGADYYETEAEVAALLAEGNVPIGIGENTKIQEC 471

Query:   303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
             IIDKN ++GK+V+I N + +QEADR   GFYIRSGIT+I++ + I+DG+VI
Sbjct:   472 IIDKNARVGKNVIIANSEGIQEADRSSDGFYIRSGITVILKNSVIKDGVVI 522

GO:0008878 "glucose-1-phosphate adenylyltransferase activity" evidence=IEA;ISS;IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

TAIR|locus:2156263 ADG1 "ADP glucose pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
 Identities = 180/353 (50%), Positives = 253/353 (71%)

Query:     3 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
             VLAA Q+P     NWFQGTADAVRQ+ W+FE+    N+    IL GDHLYRMDY  FIQ+
Sbjct:   173 VLAAQQSP--ENPNWFQGTADAVRQYLWLFEE---HNVLEYLILAGDHLYRMDYEKFIQA 227

Query:    63 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
             H + DADIT++   + E RA+ +GL+KID  GRI +FAEKP G +LKAM+VDT++LG   
Sbjct:   228 HRETDADITVAALPMDEQRATAFGLMKIDEEGRIIEFAEKPKGEHLKAMKVDTTILGLDD 287

Query:   123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYW 181
             Q A++ P++ASMG+YV  +DV+  LLR ++P +NDFGSE+IP A  +   VQAY++  YW
Sbjct:   288 QRAKEMPFIASMGIYVVSRDVMLDLLRNQFPGANDFGSEVIPGATSLGLRVQAYLYDGYW 347

Query:   182 EDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCF 240
             EDIGTI++FY AN+ +TK+  P F FYD   P YT PR+LPP+K+ +  + D++I  GC 
Sbjct:   348 EDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCV 407

Query:   241 LRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 300
             ++ C + HS+VG RS +  G  ++D++++GADYY+T +E + L A+G VPIG+G+N+ I+
Sbjct:   408 IKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETATEKSLLSAKGSVPIGIGKNSHIK 467

Query:   301 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
               IIDKN +IG +V I+N D+VQEA R   G++I+SGI  +++ A I  G VI
Sbjct:   468 RAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPTGTVI 520

GO:0008878 "glucose-1-phosphate adenylyltransferase activity" evidence=IEA;ISS;IMP;IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0019252 "starch biosynthetic process" evidence=RCA;IMP;TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0030931 "heterotetrameric ADPG pyrophosphorylase complex" evidence=IMP

UNIPROTKB|P15280 AGPS "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 177/353 (50%), Positives = 248/353 (70%)

Query:     3 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
             VLAA Q+P     NWFQGTADAVRQ+ W+FE+    N+    IL GDHLYRMDY  FIQ+
Sbjct:   167 VLAAQQSP--DNPNWFQGTADAVRQYLWLFEE---HNVMEFLILAGDHLYRMDYEKFIQA 221

Query:    63 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
             H + D+DIT++   + E RA+ +GL+KID  GRI +FAEKP G  LKAM VDT++LG   
Sbjct:   222 HRETDSDITVAALPMDEKRATAFGLMKIDEEGRIVEFAEKPKGEQLKAMMVDTTILGLDD 281

Query:   123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYW 181
               A++ PY+ASMG+YV  K+V+ +LLR ++P +NDFGSE+IP A  +   VQAY++  YW
Sbjct:   282 VRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDFGSEVIPGATNIGMRVQAYLYDGYW 341

Query:   182 EDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCF 240
             EDIGTI++FY AN+ +TK+  P F FYD   P YT PR LPP+K+ +  + D++I  GC 
Sbjct:   342 EDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCV 401

Query:   241 LRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 300
             ++ C + HS+VG RS +  G  ++D++++GADYY+TE++   L  +G +PIG+G+N  IR
Sbjct:   402 IKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIR 461

Query:   301 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
               IIDKN +IG +V I+N D+VQEA R   G++I+SGI  +++ A +  G VI
Sbjct:   462 RAIIDKNARIGDNVKIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 514

GO:0005982 "starch metabolic process" evidence=IEP

TAIR|locus:2032003 APS2 "AT1G05610" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 137/359 (38%), Positives = 208/359 (57%)

Query:     3 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
             V+AA Q+  + G  WFQGTADA+R+  WVFE+     +    +L G HLY+MDY   I+ 
Sbjct:   136 VIAAYQSLEDQG--WFQGTADAIRRCLWVFEEFP---VTEFLVLPGHHLYKMDYKMLIED 190

Query:    63 HVDRDADITISCAAVGESRASD----YGLVKIDNMGRIAQFAEKPSGANLK-AMQVDTSL 117
             H    ADITI    VG S  +D    +G +++D+   + +F  K     +  A +  T  
Sbjct:   191 HRRSRADITI----VGLSSVTDHDFGFGFMEVDSTNAVTRFTIKGQQDLISVANRTATRS 246

Query:   118 LGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEH-DVQAYI 176
              G S      C  V S G+YV  ++ + KLLR     S D  SEIIP AI E   V+A++
Sbjct:   247 DGTS-----SCS-VPSAGIYVIGREQMVKLLRECLIKSKDLASEIIPGAISEGMKVKAHM 300

Query:   177 FRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIIS 236
             F  YWED+ +I ++Y ANM   K   ++ FYD + P YT PR LPP+ +    I ++II 
Sbjct:   301 FDGYWEDVRSIGAYYRANMESIK---SYRFYDRQCPLYTMPRCLPPSSMSVAVITNSIIG 357

Query:   237 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPI--GVG 294
              GC L +C +  S+VG R+R+   V ++D++++G+D Y+ E ++     E K+ I  G+G
Sbjct:   358 DGCILDKCVIRGSVVGMRTRIADEVIVEDSIIVGSDIYEMEEDVRRKGKEKKIEIRIGIG 417

Query:   295 RNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
               ++IR  I+DKN +IGK+V+I+N+D+V+E +R   G+ IR GI II+  A I +  ++
Sbjct:   418 EKSRIRRAIVDKNARIGKNVMIINRDNVEEGNREAQGYVIREGIIIILRNAVIPNDSIL 476

GO:0008878 "glucose-1-phosphate adenylyltransferase activity" evidence=ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009853 "photorespiration" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TIGR_CMR|SO_1498 SO_1498 "glucose-1-phosphate adenylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 122/357 (34%), Positives = 178/357 (49%)

Query:     3 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
             +L A+Q   E   NW+QGTADAV Q   +    ++   + V +L GDH+YRMDY   + +
Sbjct:    95 ILPASQRYSE---NWYQGTADAVFQNIDII---RHELPKYVMVLSGDHVYRMDYAGLLAA 148

Query:    63 HVDRDADITISCAAVGESRASD-YGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFS 121
             H +  AD+T+SC  V  + A+  +G++++D+  RI  F EKP             L    
Sbjct:   149 HAESGADMTVSCLEVPVAEAAGAFGVMEVDDDMRILGFEEKPQ------------LPKHC 196

Query:   122 PQEARKCPYVASMGVYVFKKDVLFKLLR---WRYPTSNDFGSEIIPAAIMEHDVQAYIFR 178
             P    KC  +ASMG YVF  + LF+ L+       +  DFG +IIP+ I +H V AY F+
Sbjct:   197 PGNPEKC--LASMGNYVFNTEFLFEQLKKDAQNAESDRDFGKDIIPSIIEKHKVFAYPFK 254

Query:   179 D-------YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI---DNC 228
                     YW D+GT+ SF+ ANM L   +PA + YD K P +T    LPP K    D+ 
Sbjct:   255 SAFPNEQAYWRDVGTLDSFWLANMELLSPTPALNLYDAKWPIWTYQEQLPPAKFVFDDDD 314

Query:   229 R---IKDAIISHGCFLRECTVEHSIVGERSRL-DYGVELKDTVMLGADYYQTESEIASLL 284
             R     D+IIS GC +   TV  S++    R+  Y V ++D+V+L         ++  L 
Sbjct:   315 RRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSV-VEDSVVL--------PDVVVL- 364

Query:   285 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITII 341
                       R+ KI+N IID+   I +  VI    D    DR +       GIT++
Sbjct:   365 ----------RHCKIKNAIIDRGCIIPEGTVIGYNHD---HDRAKGFRVSEKGITLV 408

GO:0005978 "glycogen biosynthetic process" evidence=ISS

GO:0008878 "glucose-1-phosphate adenylyltransferase activity" evidence=ISS

UNIPROTKB|Q9KLP4 glgC2 "Glucose-1-phosphate adenylyltransferase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 97/309 (31%), Positives = 154/309 (49%)

Query:    14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITIS 73
             G  W++GTADA+    W+   A++ + + V +L GDH+YRMDY   ++ H+ ++A +TI+
Sbjct:    93 GGKWYEGTADALFHNMWLL--ARS-DAKYVVVLSGDHIYRMDYAAMLEEHISKNATLTIA 149

Query:    74 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS 133
             C  V    AS +G++ ID+  RI  F EKP+         D   +   P  +     +AS
Sbjct:   150 CMQVPRHEASAFGVMAIDDDSRITCFVEKPA---------DPPCIPNRPDHS-----LAS 195

Query:   134 MGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIMEHDVQAYIF--------RD-YW 181
             MG+Y+F  DVL K L        +S+DFG ++IP  I    V AY F        RD YW
Sbjct:   196 MGIYIFNMDVLKKALTEDAEIEQSSHDFGKDVIPKLIATGSVFAYSFCSGKGRVARDCYW 255

Query:   182 EDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFL 241
              D+GTI SFY+ANM L +  P  + Y       T  +  PP +     +  A  + G F+
Sbjct:   256 RDVGTIDSFYDANMDLLQPVPPMNLYQKNWAIRTYEQQYPPART----VSSATGNEGIFI 311

Query:   242 RECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 301
                 + + ++     + + + +   V +      +   + S+L +    + VG   K+ +
Sbjct:   312 NSI-IANGVINSGGSVQHSI-ISSNVRIN----DSALIVDSILFDD---VEVGEGCKLIH 362

Query:   302 CIIDKNVKI 310
             CIIDK+VKI
Sbjct:   363 CIIDKHVKI 371

GO:0005978 "glycogen biosynthetic process" evidence=ISS

GO:0008878 "glucose-1-phosphate adenylyltransferase activity" evidence=ISS

TIGR_CMR|VC_A0699 VC_A0699 "glucose-1-phosphate adenylyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 97/309 (31%), Positives = 154/309 (49%)

Query:    14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITIS 73
             G  W++GTADA+    W+   A++ + + V +L GDH+YRMDY   ++ H+ ++A +TI+
Sbjct:    93 GGKWYEGTADALFHNMWLL--ARS-DAKYVVVLSGDHIYRMDYAAMLEEHISKNATLTIA 149

Query:    74 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS 133
             C  V    AS +G++ ID+  RI  F EKP+         D   +   P  +     +AS
Sbjct:   150 CMQVPRHEASAFGVMAIDDDSRITCFVEKPA---------DPPCIPNRPDHS-----LAS 195

Query:   134 MGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIMEHDVQAYIF--------RD-YW 181
             MG+Y+F  DVL K L        +S+DFG ++IP  I    V AY F        RD YW
Sbjct:   196 MGIYIFNMDVLKKALTEDAEIEQSSHDFGKDVIPKLIATGSVFAYSFCSGKGRVARDCYW 255

Query:   182 EDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFL 241
              D+GTI SFY+ANM L +  P  + Y       T  +  PP +     +  A  + G F+
Sbjct:   256 RDVGTIDSFYDANMDLLQPVPPMNLYQKNWAIRTYEQQYPPART----VSSATGNEGIFI 311

Query:   242 RECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 301
                 + + ++     + + + +   V +      +   + S+L +    + VG   K+ +
Sbjct:   312 NSI-IANGVINSGGSVQHSI-ISSNVRIN----DSALIVDSILFDD---VEVGEGCKLIH 362

Query:   302 CIIDKNVKI 310
             CIIDK+VKI
Sbjct:   363 CIIDKHVKI 371

GO:0005978 "glycogen biosynthetic process" evidence=ISS

GO:0008878 "glucose-1-phosphate adenylyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B2IUY3	GLGC_NOSP7	2, ., 7, ., 7, ., 2, 7	0.5511	0.9773	0.8041	yes	no
Q00081	GLGL1_SOLTU	2, ., 7, ., 7, ., 2, 7	0.8005	0.9943	0.7468	N/A	no
B8HM61	GLGC_CYAP4	2, ., 7, ., 7, ., 2, 7	0.5028	0.9773	0.8041	yes	no
B1XLF1	GLGC_SYNP2	2, ., 7, ., 7, ., 2, 7	0.5369	0.9773	0.8041	yes	no
P55242	GLGL2_SOLTU	2, ., 7, ., 7, ., 2, 7	0.7207	0.9915	0.6743	N/A	no
B1WT08	GLGC_CYAA5	2, ., 7, ., 7, ., 2, 7	0.5028	0.9773	0.8041	yes	no
Q3MBJ4	GLGC_ANAVT	2, ., 7, ., 7, ., 2, 7	0.5284	0.9773	0.8041	yes	no
A5GLA9	GLGC_SYNPW	2, ., 7, ., 7, ., 2, 7	0.4900	0.9773	0.8004	yes	no
P12298	GLGL1_WHEAT	2, ., 7, ., 7, ., 2, 7	0.6173	0.8498	0.9966	N/A	no
P55233	GLGL1_BETVU	2, ., 7, ., 7, ., 2, 7	0.7122	0.9943	0.6724	N/A	no
Q5N3K9	GLGC_SYNP6	2, ., 7, ., 7, ., 2, 7	0.5284	0.9773	0.8023	yes	no
B7KDB8	GLGC_CYAP7	2, ., 7, ., 7, ., 2, 7	0.5227	0.9773	0.8041	yes	no
P30521	GLGC_NOSS1	2, ., 7, ., 7, ., 2, 7	0.5284	0.9773	0.8041	yes	no
B7K5U7	GLGC_CYAP8	2, ., 7, ., 7, ., 2, 7	0.5255	0.9773	0.8041	yes	no
Q31QN4	GLGC_SYNE7	2, ., 7, ., 7, ., 2, 7	0.5284	0.9773	0.8023	yes	no
Q9SIK1	GLGL4_ARATH	2, ., 7, ., 7, ., 2, 7	0.7635	0.9943	0.6711	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.963
4th Layer	2.7.7.27	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_IV001321	glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP (By similarity) (526 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XV.361.1	hypothetical protein (586 aa)	•		•			•	•		0.958
	gw1.164.92.1	hypothetical protein (387 aa)	•		•			•	•		0.950
	gw1.XVII.1126.1	hypothetical protein (688 aa)	•		•			•	•		0.943
	estExt_fgenesh4_pg.C_LG_IX1158	hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (853 aa)	•		•			•	•		0.932
	estExt_Genewise1_v1.C_LG_IV2986	hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (819 aa)	•		•			•	•		0.930
	estExt_Genewise1_v1.C_LG_IV0101	hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (950 aa)	•					•	•		0.914
	estExt_fgenesh4_pg.C_LG_XV1054	phosphoglucomutase (EC-5.4.2.2) (551 aa)						•	•		0.906
	eugene3.00121193	phosphoglucomutase (EC-5.4.2.2) (631 aa)						•	•		0.905
	estExt_fgenesh4_pm.C_LG_VIII0571	phosphoglucomutase (EC-5.4.2.2) (582 aa)						•	•		0.905
	estExt_fgenesh4_pg.C_LG_X0989	phosphoglucomutase (EC-5.4.2.2) (582 aa)						•	•		0.905

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
PLN02241	436	PLN02241, PLN02241, glucose-1-phosphate adenylyltr	0.0
PRK02862	429	PRK02862, glgC, glucose-1-phosphate adenylyltransf	0.0
TIGR02091	361	TIGR02091, glgC, glucose-1-phosphate adenylyltrans	1e-123
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	2e-92
PRK00725	425	PRK00725, glgC, glucose-1-phosphate adenylyltransf	3e-68
PRK00844	407	PRK00844, glgC, glucose-1-phosphate adenylyltransf	3e-68
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	6e-65
pfam00483	247	pfam00483, NTP_transferase, Nucleotidyl transferas	3e-54
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	3e-29
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	4e-26
cd04181	217	cd04181, NTP_transferase, NTP_transferases catalyz	2e-22
TIGR02092	369	TIGR02092, glgD, glucose-1-phosphate adenylyltrans	7e-21
cd02508	200	cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory	2e-17
cd06915	223	cd06915, NTP_transferase_WcbM_like, WcbM_like is a	5e-10
cd06426	220	cd06426, NTP_transferase_like_2, NTP_trnasferase_l	6e-07
cd04189	236	cd04189, G1P_TT_long, G1P_TT_long represents the l	9e-06
cd05787	79	cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit	1e-05
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	3e-05
cd06425	233	cd06425, M1P_guanylylT_B_like_N, N-terminal domain	9e-05
cd02540	229	cd02540, GT2_GlmU_N_bac, N-terminal domain of bact	2e-04
cd02541	267	cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca	3e-04
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	4e-04
COG1209	286	COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel	4e-04
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	6e-04

>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase

 Score =  678 bits (1752), Expect = 0.0
 Identities = 258/352 (73%), Positives = 302/352 (85%), Gaps = 3/352 (0%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAATQTPGE G  WFQGTADAVRQF W+FEDAKN+N+E V IL GDHLYRMDYMDF+Q 
Sbjct: 87  VLAATQTPGEKG--WFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQK 144

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H +  ADITI+C  V ESRASD+GL+KID+ GRI +F+EKP G  LKAMQVDT++LG SP
Sbjct: 145 HRESGADITIACLPVDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSP 204

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQAYIFRDYW 181
           +EA++ PY+ASMG+YVFKKDVL KLLRWR+PT+NDFGSEIIP AI E ++VQAY+F  YW
Sbjct: 205 EEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQAYLFDGYW 264

Query: 182 EDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFL 241
           EDIGTIKSFYEAN+ALTK+ P F FYDP  P YTSPRFLPP+KI++CRI D+IISHGCFL
Sbjct: 265 EDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISHGCFL 324

Query: 242 RECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 301
           REC +EHS+VG RSR+  GVE++DTVM+GADYY+TE EIASLLAEGKVPIG+G NTKIRN
Sbjct: 325 RECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRN 384

Query: 302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
            IIDKN +IGK+VVI+NKD VQEADR E G+YIRSGI +I++ A I DG VI
Sbjct: 385 AIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436

Length = 436

>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score =  512 bits (1321), Expect = 0.0
 Identities = 185/352 (52%), Positives = 252/352 (71%), Gaps = 7/352 (1%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAA QTP     +WFQGTADAVR++ W F+     +++   IL GD LYRMDY  F+Q 
Sbjct: 84  VLAAQQTP--ENPSWFQGTADAVRKYLWHFQ---EWDVDEYLILSGDQLYRMDYRLFVQH 138

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H +  ADIT++   V E  AS +GL+K D+ GRI +F+EKP G  LKAM VDTS LG SP
Sbjct: 139 HRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSP 198

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 182
           +EA+  PY+ASMG+YVF +DVLF LL  + P   DFG EIIP AI ++ VQ+Y+F  YWE
Sbjct: 199 EEAKGKPYLASMGIYVFSRDVLFDLLN-KNPEYTDFGKEIIPEAIRDYKVQSYLFDGYWE 257

Query: 183 DIGTIKSFYEANMALTKE-SPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFL 241
           DIGTI++FYEAN+ALT++ +P F FYD K P YT  R+LPP+K+ +  I ++II+ GC +
Sbjct: 258 DIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGCII 317

Query: 242 RECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 301
           + C++ HS++G RSR++ G  ++DT+++GAD+Y++  E   L  EGK P+G+G  T I+ 
Sbjct: 318 KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKR 377

Query: 302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
            IIDKN +IG +V IVNKD+V+EADR + GFYIR GI ++++ A I DG VI
Sbjct: 378 AIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429

Length = 429

>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase

 Score =  359 bits (923), Expect = e-123
 Identities = 133/321 (41%), Positives = 181/321 (56%), Gaps = 43/321 (13%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           +L A Q   ESG +W+QGTADAV Q   + ED    + E V IL GDH+Y+MDY   +  
Sbjct: 79  LLPAQQR--ESGTDWYQGTADAVYQNLDLIEDY---DPEYVLILSGDHIYKMDYEKMLDY 133

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H++  AD+TI+C  V    AS +G++++D  GRI  F EKP  AN  ++           
Sbjct: 134 HIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKP--ANPPSIP---------- 181

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWR---YPTSNDFGSEIIPAAIMEHDVQAYIFRD 179
                   +ASMG+Y+F KDVL +LL        +S+DFG +IIP A+ E  VQAY+F  
Sbjct: 182 --GMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSG 239

Query: 180 YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCR--IKDAIISH 237
           YW D+GTI SF+EANM L    P F  YD K P YT   FLPP K  +    + D+++S 
Sbjct: 240 YWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSE 299

Query: 238 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 297
           GC +   TV HS++G R R+  G  ++D+V++G                    +G+GR  
Sbjct: 300 GCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGA 340

Query: 298 KIRNCIIDKNVKIGKDVVIVN 318
            IRN IIDKNV+IG+ VVI N
Sbjct: 341 VIRNAIIDKNVRIGEGVVIGN 361

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score =  281 bits (720), Expect = 2e-92
 Identities = 118/356 (33%), Positives = 178/356 (50%), Gaps = 52/356 (14%)

Query: 2   FVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQ 61
           F+L A Q  G  G+ W++GTADA+ Q   +   +   + E V IL GDH+Y+MDY D + 
Sbjct: 86  FILPAQQREG--GERWYEGTADAIYQNLLIIRRS---DPEYVLILSGDHIYKMDYSDMLD 140

Query: 62  SHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFS 121
            H++  AD+T++   V    AS +G++ +D  GRI +F EKP            SL    
Sbjct: 141 FHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEKP-----ADGPPSNSL---- 191

Query: 122 PQEARKCPYVASMGVYVFKKDVLFKLLRW---RYPTSNDFGSEIIPAAIMEHDVQAYIFR 178
                     ASMG+Y+F  D+L +LL        +S+DFG +IIP  +    V AY F 
Sbjct: 192 ----------ASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFS 241

Query: 179 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCR-IKDAIISH 237
            YW D+GTI S+YEANM L    P  + YD   P YT  + LPP K  N   + +++++ 
Sbjct: 242 GYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAG 301

Query: 238 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 297
           GC +   TVE+S++    R+  G  ++++V++                     + +G   
Sbjct: 302 GCII-SGTVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGA 341

Query: 298 KIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
            +R  IIDKNV IG+ VVI    D  E DR    F    GI ++ +   I+  ++ 
Sbjct: 342 VLRRAIIDKNVVIGEGVVIGG--DKPEEDRK--RFRSEEGIVVVPKGMVIKLDIME 393

Length = 393

>gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score =  220 bits (562), Expect = 3e-68
 Identities = 112/353 (31%), Positives = 170/353 (48%), Gaps = 68/353 (19%)

Query: 13  SGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITI 72
             +NW++GTADAV Q   +       + + V IL GDH+Y+MDY   +  HV+  AD T+
Sbjct: 105 DEENWYRGTADAVYQNLDIIRRY---DPKYVVILAGDHIYKMDYSRMLADHVESGADCTV 161

Query: 73  SCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAM--QVDTSLLGFSPQEARKCPY 130
           +C  V    AS +G++ +D   RI  F EKP  AN  AM    D SL             
Sbjct: 162 ACLEVPREEASAFGVMAVDENDRITAFVEKP--ANPPAMPGDPDKSL------------- 206

Query: 131 VASMGVYVFKKDVLFKLLRW--RYPTSN-DFGSEIIPAAIMEHDVQAYIFRD-------- 179
            ASMG+YVF  D L++LL      P S+ DFG +IIP  + E  V A+ F D        
Sbjct: 207 -ASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPE 265

Query: 180 ---YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI----DNCR--I 230
              YW D+GT+ ++++AN+ L   +P    YD   P +T    LPP K        R   
Sbjct: 266 EEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMA 325

Query: 231 KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVP 290
            ++++S GC +    V  S++  R R++    ++D+V+L                    P
Sbjct: 326 INSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLL--------------------P 365

Query: 291 -IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI-RSGITII 341
            + VGR+ ++R C+ID+   I + +VI  +D  ++A R    F     GI ++
Sbjct: 366 DVNVGRSCRLRRCVIDRGCVIPEGMVI-GEDPEEDAKR----FRRSEEGIVLV 413

Length = 425

>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score =  219 bits (560), Expect = 3e-68
 Identities = 106/350 (30%), Positives = 161/350 (46%), Gaps = 64/350 (18%)

Query: 14  GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITIS 73
           GK W+ G+ADA+ Q   + ED      + V +   DH+YRMD    +  H++  A +T++
Sbjct: 94  GKRWYLGSADAIYQSLNLIEDEDP---DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVA 150

Query: 74  CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS 133
              V    AS +G++++D  GRI  F EKP  A+   +  D       P EA     +AS
Sbjct: 151 AIRVPREEASAFGVIEVDPDGRIRGFLEKP--ADPPGLPDD-------PDEA-----LAS 196

Query: 134 MGVYVFKKDVLFKLLRWRY---PTSNDFGSEIIPAAIMEHDVQAYIF------------R 178
           MG YVF  D L   LR       +S+D G +IIP  +       Y F            R
Sbjct: 197 MGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDR 256

Query: 179 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-----DNCRIKDA 233
            YW D+GTI ++Y+A+M L    P F+ Y+ + P YTS   LPP K           +D+
Sbjct: 257 GYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDS 316

Query: 234 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 293
           ++S G  +   TV +S++     ++ G E++D+V++                   V I  
Sbjct: 317 LVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLM-----------------DGVRI-- 357

Query: 294 GRNTKIRNCIIDKNVKIGKDVVI-VNKDDVQEADRPELGFYI-RSGITII 341
           GR   +R  I+DKNV +     I V+     E DR    F +   GI ++
Sbjct: 358 GRGAVVRRAILDKNVVVPPGATIGVDL----EEDRR--RFTVSEGGIVVV 401

Length = 407

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score =  210 bits (536), Expect = 6e-65
 Identities = 111/357 (31%), Positives = 162/357 (45%), Gaps = 82/357 (22%)

Query: 11  GESGKNWFQGTADAVRQFTWVFEDAKNRNI--------ENVAILCGDHLYRMDYMDFIQS 62
              G  W++GTA A+ Q           NI        E V IL GDH+Y+MDY   +  
Sbjct: 91  ESEGGKWYKGTAHAIYQ-----------NIDYIDQYDPEYVLILSGDHIYKMDYDKMLDY 139

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H +++AD+TI+   V    AS +G++  D   RI +F EKP   N K      S L    
Sbjct: 140 HKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEKP--KNPK------SNL---- 187

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIME-HDVQAYIFR 178
                    ASMG+Y+F    L + L         S+DFG  +IP  + E   + AY F+
Sbjct: 188 ---------ASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFK 238

Query: 179 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-DNCRIKDAIISH 237
            YW+D+GTI+S +EANM L +     + +D     Y+    LPP  I +N ++K++++  
Sbjct: 239 GYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVE 298

Query: 238 GCFLRECTVEHSIVGERSRLDYGVELKDTV-MLGADYYQTESEIASLLAEGKVPIGVGRN 296
           GC +   TVEHS++ +  ++  G  +KD+V M GA                     +G N
Sbjct: 299 GCVV-YGTVEHSVLFQGVQVGEGSVVKDSVIMPGAK--------------------IGEN 337

Query: 297 TKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
             I   II +N  IG  V+I    +V               IT+I E   I  G VI
Sbjct: 338 VVIERAIIGENAVIGDGVIIGGGKEV---------------ITVIGENEVIGVGTVI 379

Length = 380

>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase

 Score =  178 bits (453), Expect = 3e-54
 Identities = 61/203 (30%), Positives = 87/203 (42%), Gaps = 35/203 (17%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           V  A Q           GTA AV        D      E V +L GDH+YRMD+ + +Q 
Sbjct: 75  VTYALQPEPR-------GTAPAVALAADFLGDDDP---ELVLVLGGDHIYRMDFEEAVQK 124

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
              + AD T++   V     + YG+++ D  GR+ +F EKP                   
Sbjct: 125 ARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFVEKPDLP---------------- 168

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDFGSEIIPAAIMEHDVQ-AYIFRD 179
               K    ASMG+Y F   V   L +         D  ++ IPAA+ + D+  A++FR 
Sbjct: 169 ----KASNYASMGIYFFNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLDLAFLFRG 224

Query: 180 --YWEDIGTIKSFYEANMALTKE 200
             YW D+GT  S +EAN+ L   
Sbjct: 225 YAYWSDVGTWDSLWEANLKLLTG 247

This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score =  108 bits (272), Expect = 3e-29
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 23/127 (18%)

Query: 221 PPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI 280
           PP       +K++++S GC +   TVE+S++    R+  G  ++D+V++           
Sbjct: 1   PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNV-------- 52

Query: 281 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI 340
                      G+GRN  IR  IIDKNV I   VVI    +   A      +    GI +
Sbjct: 53  -----------GIGRNAVIRRAIIDKNVVIPDGVVIGGDPEEDRAR----FYVTEDGIVV 97

Query: 341 IMEKATI 347
           + +   I
Sbjct: 98  VGKGMVI 104

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score =  106 bits (267), Expect = 4e-26
 Identities = 71/302 (23%), Positives = 121/302 (40%), Gaps = 63/302 (20%)

Query: 20  GTADAVRQFTWVFEDAKNR-NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 78
           GTA A++        A +    ++  +L GD L  +D  + ++ H  + A  TI  A   
Sbjct: 85  GTAGALKN-------ALDLLGGDDFLVLNGDVLTDLDLSELLEFHKKKGALATI--ALTR 135

Query: 79  ESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 137
               S++G+V+ D   GR+ +F EKP                           + + G+Y
Sbjct: 136 VLDPSEFGVVETDDGDGRVVEFREKPGPEEPP-------------------SNLINAGIY 176

Query: 138 VFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMA 196
           +F  +V F  +        DF  E++PA   +  DV  Y+F  YW DIGT +   EAN  
Sbjct: 177 IFDPEV-FDYIE--KGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANEL 233

Query: 197 LTKESPAFHFYDPKTPFYTSPR--FLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGER 254
           L +          + P         + P  I       A I  G  +      ++++GE 
Sbjct: 234 LLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIG----PGAKIGPGALIG----PYTVIGEG 285

Query: 255 SRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 314
             +  GVE+K+++++                +  V   +G  + I + II +N KIG  +
Sbjct: 286 VTIGNGVEIKNSIIM----------------DNVV---IGHGSYIGDSIIGENCKIGASL 326

Query: 315 VI 316
           +I
Sbjct: 327 II 328

Length = 358

>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

 Score = 93.4 bits (233), Expect = 2e-22
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 32/167 (19%)

Query: 20  GTADAVRQFTWVFEDAKNRNI-ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 78
           GTA AVR        A++    ++  ++ GD L  +D  + ++ H ++ AD TI+   V 
Sbjct: 82  GTAGAVRN-------AEDFLGDDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEV- 133

Query: 79  ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYV 138
               S YG+V++D+ GR+ +F EKP+                          +A+ G+Y+
Sbjct: 134 -EDPSRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYI 171

Query: 139 FKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 185
           F+ ++    +    P   D  ++ IP  I E  V  Y    YW DIG
Sbjct: 172 FEPEI-LDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217

>gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit

 Score = 92.1 bits (229), Expect = 7e-21
 Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 55/286 (19%)

Query: 41  ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 100
           E   +L    +  +D    ++ H +   DIT+    V  + AS+Y          I +F 
Sbjct: 115 EYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYD--------TILRFD 166

Query: 101 EKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGS 160
           E     ++         L    +E        S+ +Y+   D+L +LL          G 
Sbjct: 167 ESGKVKSIG------QNLNPEEEENI------SLDIYIVSTDLLIELLY----ECIQRGK 210

Query: 161 EIIPAAIM-----EHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFH---FYDPKTP 212
                 ++     E ++ AY +  Y  +I ++KS+Y+ANM L    P      FY  + P
Sbjct: 211 LTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLD--PQNFQSLFYSSQGP 268

Query: 213 FYTSPRFLPPTK-IDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 271
            YT  +  PPT   +N +++++++++GC + E  VE+SI+     +     +K+ +++  
Sbjct: 269 IYTKVKDEPPTYYAENSKVENSLVANGCII-EGKVENSILSRGVHVGKDALIKNCIIM-- 325

Query: 272 DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 317
                 + I             G    + N IIDK+V I  +V I 
Sbjct: 326 ----QRTVI-------------GEGAHLENVIIDKDVVIEPNVKIA 354

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369

>gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

 Score = 79.5 bits (197), Expect = 2e-17
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 2   FVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQ 61
           F+L   Q  G    +W++GTADA+ Q     E +     E V IL GDH+Y MDY + + 
Sbjct: 79  FILPPQQRKGG---DWYRGTADAIYQNLDYIERSDP---EYVLILSGDHIYNMDYREMLD 132

Query: 62  SHVDRDADITISC 74
            H++  ADIT+  
Sbjct: 133 FHIESGADITVVY 145

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200

>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases

 Score = 58.3 bits (142), Expect = 5e-10
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 27/153 (17%)

Query: 41  ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 100
           +   +L GD  + +D +  + +     AD T++   V +  AS YG V +D  GR+  F 
Sbjct: 97  DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFV 154

Query: 101 EKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGS 160
           EK  GA                        +   GVY+ +K++L ++       S    +
Sbjct: 155 EKGPGAAPG--------------------LING-GVYLLRKEILAEIP--ADAFS--LEA 189

Query: 161 EIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 193
           +++PA +    +  +    Y+ DIG  + +  A
Sbjct: 190 DVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223

>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

 Score = 49.4 bits (119), Expect = 6e-07
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 35/150 (23%)

Query: 48  GDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGAN 107
           GD L  ++Y   +  H + +AD T+ C    E +   YG+V+ +  GRI    EKP+   
Sbjct: 103 GDILTNLNYEHLLDFHKENNADATV-CVREYEVQVP-YGVVETEG-GRITSIEEKPT--- 156

Query: 108 LKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF--GSEIIPA 165
                                 ++ + G+YV + +VL           N+F    ++I  
Sbjct: 157 --------------------HSFLVNAGIYVLEPEVL------DLIPKNEFFDMPDLIEK 190

Query: 166 AIMEHD-VQAYIFRDYWEDIGTIKSFYEAN 194
            I E   V  +   +YW DIG  + + +AN
Sbjct: 191 LIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220

>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 40/156 (25%)

Query: 48  GDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGAN 107
           GD+L +      ++  ++ DAD +I  A V + R   +G+  +D+ GRI +  EKP    
Sbjct: 106 GDNLIQEGISPLVRDFLEEDADASILLAEVEDPRR--FGVAVVDD-GRIVRLVEKP---- 158

Query: 108 LKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL--FKLLR--WRYPTSNDFGSEII 163
               +   S L             A +GVY F   +      L+  WR       G   I
Sbjct: 159 ----KEPPSNL-------------ALVGVYAFTPAIFDAISRLKPSWR-------GELEI 194

Query: 164 PAAIME-----HDVQAYIFRDYWEDIGTIKSFYEAN 194
             AI         V   I   +W+D GT +   EAN
Sbjct: 195 TDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEAN 230

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236

>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 293 VGRNTKIRNCIIDKNVKIGKDVVIVNK---DDVQEADRPELGFYIRSGITIIMEKATIED 349
           +G  T I+N +I +N KIGK+VVI N    DDV   D   +   I +   +I +  TI  
Sbjct: 8   IGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPP 67

Query: 350 GMVI 353
           G +I
Sbjct: 68  GSLI 71

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 75/356 (21%), Positives = 124/356 (34%), Gaps = 89/356 (25%)

Query: 16  NWFQ-----GTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDA 68
           NW       GT  AV Q      D       +V +L GD  L   + +   +++H  R  
Sbjct: 67  NWVLQAEQLGTGHAVLQALPFLPDD-----GDVLVLYGDVPLISAETLERLLEAH--RQN 119

Query: 69  DITISCAAVGESRASDYGLVKIDNMGRIAQFAE-KPSGANLKAMQ-VDTSLLGFSPQEAR 126
            IT+  A + +   + YG +  +N G++    E K + A  KA++ ++T           
Sbjct: 120 GITLLTAKLPD--PTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINT----------- 166

Query: 127 KCPYVASMGVYVFKKDVLFKLLRWRYPTSND------FGSEIIPAAIMEHD-VQAYIFRD 179
                   GVYVF       L RW    SN+      + +++I  A+ + + V+A    D
Sbjct: 167 --------GVYVFDGA---ALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDD 215

Query: 180 YWEDIG--TIKSFYEANMALTKESPAFH------FYDPKTPF-------------YTSPR 218
             E +G        +    L +              DP                   +  
Sbjct: 216 SDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVI 275

Query: 219 FLPPTKIDN-------CRIKDAIISHGCFLRE-CTVEHSIVGERS------RLDYGVELK 264
                KI +       C IK+++I     ++    +E S +GE        RL  G  L 
Sbjct: 276 LEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLG 335

Query: 265 DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 320
             V +G      E++ A +    K     G  + + +  I  NV IG   +  N D
Sbjct: 336 AGVHIGN---FVETKNARIGKGSKA----GHLSYLGDAEIGSNVNIGAGTITCNYD 384

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 40/135 (29%), Positives = 53/135 (39%), Gaps = 30/135 (22%)

Query: 58  DFIQSHVDRDADITISCAAVGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTS 116
           + +  H    A+ TI    V +   S YG+V  D N GRI +F EKP             
Sbjct: 119 ELLDFHKKHGAEGTILVTKVEDP--SKYGVVVHDENTGRIERFVEKP------------- 163

Query: 117 LLGFSPQEARKCPYVASMGVYVFKKDVLFKL-LRWRYPTSNDFGSEIIPAAIMEHDVQAY 175
                 +        A  G+Y+    VL ++ LR   PTS     EI P    E  + AY
Sbjct: 164 ------KVFVGNKINA--GIYILNPSVLDRIPLR---PTS--IEKEIFPKMASEGQLYAY 210

Query: 176 IFRDYWEDIGTIKSF 190
               +W DIG  K F
Sbjct: 211 ELPGFWMDIGQPKDF 225

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233

>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 31/135 (22%)

Query: 20  GTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITISCAAV 77
           GT  AV+Q       A      +V +L GD  L   + +   +++H +  AD+T+  A  
Sbjct: 74  GTGHAVKQA----LPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTA-- 127

Query: 78  GESRASD---YGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 134
                 D   YG +  D  G++ +  E          + D +       E  K     + 
Sbjct: 128 ---ELEDPTGYGRIIRDGNGKVLRIVE----------EKDAT-------EEEKAIREVNA 167

Query: 135 GVYVFKKDVLFKLLR 149
           G+Y F  + LF+ L 
Sbjct: 168 GIYAFDAEFLFEALP 182

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229

>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 43/179 (24%), Positives = 60/179 (33%), Gaps = 52/179 (29%)

Query: 41  ENVAILCGDHLYRMDYMDFIQSHVDRDADI----------TISCAAVGESRASDYGLVKI 90
           E  A+L GD        D I S       +           I+   V     S YG+VK 
Sbjct: 120 EPFAVLLGD--------DLIDSKEPCLKQLIEAYEKTGASVIAVEEVPPEDVSKYGIVKG 171

Query: 91  ----DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 146
                ++ ++    EKP                  P+EA     +A +G YV   D+ F 
Sbjct: 172 EKIDGDVFKVKGLVEKPK-----------------PEEAP--SNLAIVGRYVLTPDI-FD 211

Query: 147 LLRWRYPTSNDFGSEI-----IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN--MALT 198
           +L    P     G EI     I   + E  V AY+F     D G    + +A    AL 
Sbjct: 212 ILENTKP---GKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFALK 267

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 74/346 (21%), Positives = 118/346 (34%), Gaps = 78/346 (22%)

Query: 20  GTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITISCAAV 77
           GT  AV Q      D  +    +V +L GD  L   + + + + +H    A  T+  A  
Sbjct: 79  GTGHAVLQALPALADDYD---GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA-- 133

Query: 78  GESRASD---YGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 134
                 D   YG +  D  G +    E          + D S      +E ++   + + 
Sbjct: 134 ---ELDDPTGYGRIVRDGNGEVTAIVE----------EKDAS------EEEKQIKEINT- 173

Query: 135 GVYVFKKDVLFKLLRWRYPTSNDFG----SEIIPAAIMEH-DVQAYIFRDYWEDIG--TI 187
           G+Y F    L + L  +   +N  G    +++I  A  E   V+A    D  E +G    
Sbjct: 174 GIYAFDGAALLRALP-KLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDR 232

Query: 188 KSFYEANMALTKESPAFH------FYDPKTPF-------------YTSPRFLPPTKID-- 226
               EA   + +              DP T +               +      T I   
Sbjct: 233 VQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDN 292

Query: 227 -----NCRIKDAIISHGCFLRECTV-EHSIVGERS------RLDYGVELKDTVMLGADYY 274
                   IKD++I     ++  +V E S VGE +      RL  G  L   V +G    
Sbjct: 293 VVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGN--- 349

Query: 275 QTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 320
             E + A++    K     G  T + +  I +NV IG   +  N D
Sbjct: 350 FVEVKKATIGKGSK----AGHLTYLGDAEIGENVNIGAGTITCNYD 391

Length = 460

>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 43/166 (25%)

Query: 41  ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 100
           ++  +  GD++++    + ++   +  +  TI    V +     YG+V+ D  G++    
Sbjct: 100 DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSR--YGVVEFDEDGKVIGLE 157

Query: 101 EKPS--GANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL--FKLLR--WRYPT 154
           EKP    +NL                       A  G+Y +   V    K ++   R   
Sbjct: 158 EKPKEPKSNL-----------------------AVTGLYFYDPSVFEAIKQIKPSAR--- 191

Query: 155 SNDFG-SEIIPA--AIMEHD--VQAYIFRDYWEDIGTIKSFYEANM 195
               G  EI  A    +E    V A + R +W D GT +S  EAN 
Sbjct: 192 ----GELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANN 233

Length = 286

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 44/187 (23%)

Query: 19  QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 78
            GTADA+         AK    +   +L GD L   D ++ +   +  +A    + A V 
Sbjct: 83  LGTADALGS-------AKEYVDDEFLVLNGDVLLDSDLLERL---IRAEAP---AIAVVE 129

Query: 79  ESRASDYGLVKIDNMGRIAQFAEKPSGA--NLKAMQVDTSLLGFSPQEARKCPYVASMGV 136
               SDYG+V+ D  GR+    EKP     NL                        + G+
Sbjct: 130 VDDPSDYGVVETDG-GRVTGIVEKPENPPSNL-----------------------INAGI 165

Query: 137 YVFKKDVLFKLLRWRYPTSNDFGSEI---IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 193
           Y+F  ++ F+LL  +   S     E+   +   I E  V+A     +W D+G      +A
Sbjct: 166 YLFSPEI-FELLE-KTKLSPRGEYELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDA 223

Query: 194 NMALTKE 200
           N AL   
Sbjct: 224 NEALLDN 230

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	100.0
PLN02241	436	glucose-1-phosphate adenylyltransferase	100.0
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	100.0
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	100.0
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	100.0
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	100.0
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	100.0
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	100.0
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	100.0
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	99.98
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.98
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.98
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.97
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.97
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.96
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.94
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	99.92
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	99.92
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	99.9
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	99.9
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	99.9
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	99.89
PRK10122	297	GalU regulator GalF; Provisional	99.89
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	99.89
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	99.87
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	99.87
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	99.86
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	99.86
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	99.85
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	99.84
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	99.81
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	99.81
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	99.8
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	99.79
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	99.79
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	99.77
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.7
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	99.69
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	99.62
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.62
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	99.58
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.57
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.57
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.56
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	99.56
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	99.54
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.53
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.51
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.5
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.49
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.49
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	99.49
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.48
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.47
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.47
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.46
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.46
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.46
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.46
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.43
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.42
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.42
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.41
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.4
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.39
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.37
PLN02296	269	carbonate dehydratase	99.36
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.36
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.36
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.36
PRK13627	196	carnitine operon protein CaiE; Provisional	99.35
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.35
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.35
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.34
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.34
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.34
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	99.33
PLN02472	246	uncharacterized protein	99.31
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.31
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.3
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.29
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	99.29
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.29
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.29
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.29
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.26
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.26
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.26
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.25
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.25
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.25
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	99.24
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.24
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.22
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.19
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.19
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.19
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.18
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.16
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.16
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.16
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.16
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.15
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.15
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.15
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.15
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.14
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.13
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.13
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.13
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.12
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.11
PLN02296	269	carbonate dehydratase	99.1
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.09
PLN02472	246	uncharacterized protein	99.08
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.08
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.06
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.06
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.05
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.04
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.04
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.03
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.03
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.03
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.03
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.03
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	98.99
PRK13627	196	carnitine operon protein CaiE; Provisional	98.95
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	98.93
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	98.93
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	98.91
PLN02694	294	serine O-acetyltransferase	98.89
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	98.88
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	98.88
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	98.86
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	98.85
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	98.82
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	98.78
PRK10502	182	putative acyl transferase; Provisional	98.77
PLN02917	293	CMP-KDO synthetase	98.76
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	98.75
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	98.75
PRK11132	273	cysE serine acetyltransferase; Provisional	98.73
PLN02357	360	serine acetyltransferase	98.72
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.72
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	98.72
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	98.71
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	98.71
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.7
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.68
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.67
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	98.66
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.66
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	98.65
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	98.64
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	98.63
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.63
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.62
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	98.62
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.62
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.61
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	98.59
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.57
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.57
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.56
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.56
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.54
PLN02739	355	serine acetyltransferase	98.54
PLN02241	436	glucose-1-phosphate adenylyltransferase	98.52
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	98.51
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	98.5
PRK10191	146	putative acyl transferase; Provisional	98.5
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	98.45
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	98.45
PRK11132	273	cysE serine acetyltransferase; Provisional	98.45
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	98.45
PRK10191	146	putative acyl transferase; Provisional	98.45
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	98.44
PRK10502	182	putative acyl transferase; Provisional	98.43
PRK10092	183	maltose O-acetyltransferase; Provisional	98.42
PLN02357	360	serine acetyltransferase	98.41
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.39
PLN02694	294	serine O-acetyltransferase	98.37
PRK10092	183	maltose O-acetyltransferase; Provisional	98.37
PLN02739	355	serine acetyltransferase	98.35
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	98.3
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.27
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	98.26
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.22
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.14
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.14
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.13
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	98.1
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.07
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.05
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	97.96
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	97.88
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	97.81
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	97.73
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	97.72
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	97.68
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	97.32
COG4801	277	Predicted acyltransferase [General function predic	97.31
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	97.3
COG4801	277	Predicted acyltransferase [General function predic	97.29
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	97.28
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.2
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	96.98
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	96.96
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	96.92
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	96.91
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	96.79
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	96.76
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	96.7
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	96.64
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	96.2
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	96.19
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	94.95
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	94.24
PLN02474	469	UTP--glucose-1-phosphate uridylyltransferase	93.93
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	92.17
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	91.99
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	90.99
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	85.93
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	84.66
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	84.37

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.9e-54  Score=395.51  Aligned_cols=304  Identities=37%  Similarity=0.682  Sum_probs=271.2

Q ss_pred             CeeecCcccCCCCCCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCC
Q 018622            1 MFVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES   80 (353)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~   80 (353)
                      ++|+||+++.  .++.|+.|||+|++|...++.+   .+.+++++++||+++++|+++|+++|.++++++|+++.+++.+
T Consensus        85 v~ilp~~~~~--~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~  159 (393)
T COG0448          85 VFILPAQQRE--GGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPRE  159 (393)
T ss_pred             EEEeCchhcc--CCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChH
Confidence            4899999992  3557999999999999999984   6789999999999999999999999999999999999999988


Q ss_pred             CCCcceEEEECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCc
Q 018622           81 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND  157 (353)
Q Consensus        81 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~  157 (353)
                      ++++||++.+|++|+|+.|.|||.....                   ...++++|+|+|++++|.++|++...   +..|
T Consensus       160 eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~D  220 (393)
T COG0448         160 EASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPNSSHD  220 (393)
T ss_pred             hhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccCcccc
Confidence            8899999999999999999999987221                   12389999999999999988886542   3468


Q ss_pred             hhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEec-eeeeceEEC
Q 018622          158 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIKDAIIS  236 (353)
Q Consensus       158 ~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig  236 (353)
                      |.++++|.+++++++++|+++|||.||||.++|++||++|++..+.+.+++++|+|++.....||+++.. +.+.+|.|+
T Consensus       221 fgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv~  300 (393)
T COG0448         221 FGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVA  300 (393)
T ss_pred             chHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEeeeeee
Confidence            9999999999999999999999999999999999999999997778889999999999999999999975 888999999


Q ss_pred             CCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEE
Q 018622          237 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI  316 (353)
Q Consensus       237 ~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i  316 (353)
                      .||+|.+ +|.||+|+++++|+++|.|++|+++++                   +.||++|+|++|||+++|.|++|++|
T Consensus       301 ~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~g~~i  360 (393)
T COG0448         301 GGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGEGVVI  360 (393)
T ss_pred             CCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCCCcEE
Confidence            9999996 999999999999999999999999999                   89999999999999999999999999


Q ss_pred             ccCCCcccccCCCCceEEccCeEEecCCcEECCCcc
Q 018622          317 VNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV  352 (353)
Q Consensus       317 ~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~v  352 (353)
                      ++..  ++..+.. ..+. +++.+|++++.++.+..
T Consensus       361 ~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~  392 (393)
T COG0448         361 GGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM  392 (393)
T ss_pred             cCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence            9874  2222222 3444 77788899998877653

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=1.5e-47  Score=372.69  Aligned_cols=338  Identities=73%  Similarity=1.245  Sum_probs=280.4

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      ++++|||+||++++.++.+.....+++|||++||++++.|+.+++++|+++++++|+++++++.+++++||++.+|++++
T Consensus        98 ~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~  177 (436)
T PLN02241         98 GWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGR  177 (436)
T ss_pred             ccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCC
Confidence            57899999999999887631101148999999999999999999999999999999999988755578999999998899


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc-CcEEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQA  174 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~-~~i~~  174 (353)
                      |++|.|||..+....+++++++|+.++..++...+++++|+|+|++++|..++++..+...++.+++++.++++ .++++
T Consensus       178 v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~  257 (436)
T PLN02241        178 IIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQA  257 (436)
T ss_pred             EEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEE
Confidence            99999999765444556666666654433333457999999999999997777655444347788999999987 68999


Q ss_pred             EEecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEeceeeeceEECCCcEECceEEeeeEEcCC
Q 018622          175 YIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGER  254 (353)
Q Consensus       175 ~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v~~~~ig~~  254 (353)
                      |.++|||.|+|+|++|++|+++++...+...++.+.+++++.....+|+.+.++.+.+|+|+++|+|+++.|.+|+|+++
T Consensus       258 ~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I~~~~~I~~~~I~~svI~~~  337 (436)
T PLN02241        258 YLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLR  337 (436)
T ss_pred             EeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEEcCCcEEcCeEEEeeEEcCC
Confidence            99999999999999999999999987665566777788888777779999988888889999999999778899999999


Q ss_pred             cEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEE
Q 018622          255 SRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI  334 (353)
Q Consensus       255 ~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i  334 (353)
                      |.||++|+|.++++++.+.+........+...+.++++||++|.|++++|++++.||+++.+.+.+++.+..++|++++|
T Consensus       338 ~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~  417 (436)
T PLN02241        338 SRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYI  417 (436)
T ss_pred             CEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccccCCccccccccEE
Confidence            99999999999999996433222111122212322248999999999999999999999999999999999999999999


Q ss_pred             ccCeEEecCCcEECCCccC
Q 018622          335 RSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       335 ~~~~~vig~~~~i~~g~vv  353 (353)
                      +.|+++||+++.|++||+|
T Consensus       418 ~~~~~~i~~~~~~~~~~~~  436 (436)
T PLN02241        418 RSGIVVILKNAVIPDGTVI  436 (436)
T ss_pred             eCCEEEEcCCcEeCCCCCC
Confidence            9997789999999999986

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=4.9e-46  Score=361.13  Aligned_cols=334  Identities=53%  Similarity=0.979  Sum_probs=273.6

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      .+++|||+||+++++++++   ..+++|+|++||+++++|+++++++|+++++++|+++.+.+.+.+..||++.+|++++
T Consensus        95 ~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~  171 (429)
T PRK02862         95 SWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGR  171 (429)
T ss_pred             ccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCc
Confidence            4468999999999999963   2347899999999999999999999999999999999877654467899999998899


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY  175 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~  175 (353)
                      |..|.|||..+....+.++.++|...+...+...+++++|+|+|++++|..++++.. ...++.+++++.++++.++.+|
T Consensus       172 V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~~~~dil~~l~~~~~v~~~  250 (429)
T PRK02862        172 ITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTDFGKEIIPEAIRDYKVQSY  250 (429)
T ss_pred             EEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-ChhhhHHHHHHHHhccCcEEEE
Confidence            999999997554444555555554444433334568999999999999977776532 2346677999999988999999


Q ss_pred             EecceEeEcCCHHHHHHHHHhhc-cCCCcccccCCCCceecCCCCCCCeEEeceeeeceEECCCcEECceEEeeeEEcCC
Q 018622          176 IFRDYWEDIGTIKSFYEANMALT-KESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGER  254 (353)
Q Consensus       176 ~~~g~w~dIgtp~~y~~a~~~ll-~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v~~~~ig~~  254 (353)
                      .+++||.|+|||++|++++++++ ...+....+.+.+++++.+.+.+|+.+.++.+++++||++|.|.++.|.+|+||++
T Consensus       251 ~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~~i~~~~i~~svi~~~  330 (429)
T PRK02862        251 LFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIR  330 (429)
T ss_pred             EeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECCCCEECCcEEEEEEEeCC
Confidence            99999999999999999999998 54555566677888999999999998877888899999999997688999999999


Q ss_pred             cEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEE
Q 018622          255 SRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI  334 (353)
Q Consensus       255 ~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i  334 (353)
                      |+||++|+|.+|++++++.+......-.....+.+.+.||++|.|.+|+|++++.||+++.+.+...++...+...+++|
T Consensus       331 ~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  410 (429)
T PRK02862        331 SRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYI  410 (429)
T ss_pred             cEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCCCcccccccccceEe
Confidence            99999999999999985322111110000001111278999999999999999999999999998888887777889999


Q ss_pred             ccCeEEecCCcEECCCccC
Q 018622          335 RSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       335 ~~~~~vig~~~~i~~g~vv  353 (353)
                      +.|+++|+.++++++||+|
T Consensus       411 ~~~~~~~~~~~~~~~~~~~  429 (429)
T PRK02862        411 RDGIVVVVKNAVIPDGTVI  429 (429)
T ss_pred             eCCEEEEcCCcCCCCCCCC
Confidence            9998899999999999975

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=5.4e-43  Score=310.96  Aligned_cols=275  Identities=36%  Similarity=0.569  Sum_probs=215.4

Q ss_pred             ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECC-CCCe
Q 018622           18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-MGRI   96 (353)
Q Consensus        18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~-~g~V   96 (353)
                      ++||+|.+..|+.++..+   .+.+|+|+|||+++++||.+|+++|+++++++|+++.++++  +++||++..|+ .|+|
T Consensus        93 plgtaGpl~laR~~L~~~---~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vde--pSkyGvv~~d~~~grV  167 (371)
T KOG1322|consen   93 PLGTAGPLALARDFLWVF---EDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDE--PSKYGVVVIDEDTGRV  167 (371)
T ss_pred             CCcccchHHHHHHHhhhc---CCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccC--ccccceEEEecCCCce
Confidence            566777777777766531   22389999999999999999999999999999999999987  89999999998 8999


Q ss_pred             eEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEEE
Q 018622           97 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYI  176 (353)
Q Consensus        97 ~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~~  176 (353)
                      .+|.|||+...                     ++-+|+|+|+|+|++|++++.  .+.  +++++++|.+++++++++|.
T Consensus       168 ~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~~--~pt--SiekEifP~~a~~~~l~a~~  222 (371)
T KOG1322|consen  168 IRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRILL--RPT--SIEKEIFPAMAEEHQLYAFD  222 (371)
T ss_pred             eEehhCchhhh---------------------hccccceEEEECHHHHhHhhh--ccc--chhhhhhhhhhhcCceEEEe
Confidence            99999998432                     467789999999999998762  233  47889999999999999999


Q ss_pred             ecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEeceeeec--eEECCCcEECceEEeeeEEcCC
Q 018622          177 FRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKD--AIISHGCFLRECTVEHSIVGER  254 (353)
Q Consensus       177 ~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~--~~ig~~~~i~~~~v~~~~ig~~  254 (353)
                      ++|||+|||+|++|+.+...+++..          +.++..+..||+.+.++++-+  ..+|.+|.|+    .|++||++
T Consensus       223 l~gfWmDIGqpkdf~~g~~~Yl~s~----------~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig----~~vvIG~r  288 (371)
T KOG1322|consen  223 LPGFWMDIGQPKDFLTGFSFYLRSL----------PKYTSPRLLPGSKIVGNVLVDSIASIGENCSIG----PNVVIGPR  288 (371)
T ss_pred             cCchhhhcCCHHHHHHHHHHHHhhC----------cccCCccccCCccccccEeeccccccCCccEEC----CCceECCC
Confidence            9999999999999999977666543          334455566677666655543  4578888888    46999999


Q ss_pred             cEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEE
Q 018622          255 SRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI  334 (353)
Q Consensus       255 ~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i  334 (353)
                      |+|+.|+.|++|.+++++.+..+.++.+.+-+..  +.||.++     +|..++.||.++++.+...+.+    +.+..+
T Consensus       289 ~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~--~~IG~~~-----~id~~a~lG~nV~V~d~~~vn~----g~~l~~  357 (371)
T KOG1322|consen  289 VRIEDGVRLQDSTILGADYYETHSEISSSIVGWN--VPIGIWA-----RIDKNAVLGKNVIVADEDYVNE----GSGLPI  357 (371)
T ss_pred             cEecCceEEEeeEEEccceechhHHHHhhhcccc--ccccCce-----EEecccEeccceEEeccccccc----ceeEEe
Confidence            9999999999999999999999999975443333  6777666     4555555555555555433222    245667


Q ss_pred             ccCeEEecCCcEE
Q 018622          335 RSGITIIMEKATI  347 (353)
Q Consensus       335 ~~~~~vig~~~~i  347 (353)
                      .++.+.|-++++|
T Consensus       358 ks~~~~v~~~~iI  370 (371)
T KOG1322|consen  358 KSGITVVLKPAII  370 (371)
T ss_pred             ccceeeccccccc
Confidence            7776777777665

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=9.8e-42  Score=327.22  Aligned_cols=279  Identities=36%  Similarity=0.627  Sum_probs=238.9

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      +|++|||+||++|++++++   ..+++|+|++||++++.|+.+++++|+++++++|+++.+.+.+++.+||++.+|++++
T Consensus        96 ~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~  172 (380)
T PRK05293         96 KWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMR  172 (380)
T ss_pred             cccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCc
Confidence            5789999999999999963   1236899999999999999999999999999999988776544478899999988899


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-Cc
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME-HD  171 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~-~~  171 (353)
                      |..|.|||..+.                     ++++++|+|+|++++|..++++...   ...+|.+|+++.++++ .+
T Consensus       173 V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~  231 (380)
T PRK05293        173 IVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEK  231 (380)
T ss_pred             EEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCe
Confidence            999999986432                     3688999999999999767664321   2346778999999876 58


Q ss_pred             EEEEEecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEec-eeeeceEECCCcEECceEEeeeE
Q 018622          172 VQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLRECTVEHSI  250 (353)
Q Consensus       172 i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~~~~v~~~~  250 (353)
                      +.+|.++++|.|+|+|++|++|+++++...+...++++.+.+.+.+.+.+|++|+. +.+.++.||++|+|+ +.+.+|+
T Consensus       232 v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~-~~v~~s~  310 (380)
T PRK05293        232 LYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVY-GTVEHSV  310 (380)
T ss_pred             EEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEecCEECCCCEEc-ceecceE
Confidence            99999999999999999999999999987766667778888888888999999975 888999999999997 5678999


Q ss_pred             EcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCC
Q 018622          251 VGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL  330 (353)
Q Consensus       251 ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~  330 (353)
                      ||++|.||++|+|++|+++++                   +.|++++.|.+|+|++++.|++++.+.++...        
T Consensus       311 ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~--------  363 (380)
T PRK05293        311 LFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIGDGVIIGGGKEV--------  363 (380)
T ss_pred             EcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEECCCCEEcCCCce--------
Confidence            999999999999999999998                   89999999999999999999999999876321        


Q ss_pred             ceEEccCeEEecCCcEECCCccC
Q 018622          331 GFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       331 ~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                             ..+||++++|+++++|
T Consensus       364 -------~~~ig~~~~~~~~~~~  379 (380)
T PRK05293        364 -------ITVIGENEVIGVGTVI  379 (380)
T ss_pred             -------eEEEeCCCCCCCCcEe
Confidence                   2567778888777764

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=5.1e-41  Score=325.62  Aligned_cols=293  Identities=34%  Similarity=0.627  Sum_probs=238.7

Q ss_pred             CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      .+++++|||+||++|++++++   ..+++|+|++||++++.|+.+++++|+++++++|+++.+++.+.+.+||++.+|++
T Consensus       106 ~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~  182 (425)
T PRK00725        106 EENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDEN  182 (425)
T ss_pred             CCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCC
Confidence            446789999999999999973   22478999999999999999999999999999999998875444789999999988


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhC---CCCCchhhhhhhhhhhcC
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFGSEIIPAAIMEH  170 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~---~~~~~~~~d~l~~l~~~~  170 (353)
                      ++|+.|.|||..+..  ++.+            ..+.++++|+|+|++++|..++++..   ....+|.+|+++.+++++
T Consensus       183 ~~V~~~~EKp~~~~~--~~~~------------~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~  248 (425)
T PRK00725        183 DRITAFVEKPANPPA--MPGD------------PDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEG  248 (425)
T ss_pred             CCEEEEEECCCCccc--cccC------------ccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccC
Confidence            999999999864421  0000            02468999999999999866665432   123567789999999999


Q ss_pred             cEEEEEec-----------ceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEe----c--eeeece
Q 018622          171 DVQAYIFR-----------DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID----N--CRIKDA  233 (353)
Q Consensus       171 ~i~~~~~~-----------g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~----~--~~i~~~  233 (353)
                      ++++|.++           +||.|+|+|++|++|+++++...+...++....++++.....+|+.+.    +  +.+.+|
T Consensus       249 ~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s  328 (425)
T PRK00725        249 KVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINS  328 (425)
T ss_pred             cEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEEeC
Confidence            99999986           699999999999999999998766555666677787777777877652    2  456799


Q ss_pred             EECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCC
Q 018622          234 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD  313 (353)
Q Consensus       234 ~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~  313 (353)
                      +||++|+|.++.|.+|+|+++|.||++|.|++|+++++                   +.||++|.|.+|+|++++.|+++
T Consensus       329 ~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~~~i~~~ii~~~~~i~~~  389 (425)
T PRK00725        329 LVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRSCRLRRCVIDRGCVIPEG  389 (425)
T ss_pred             EEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCCCEEeeEEECCCCEECCC
Confidence            99999999878899999999999999999999999998                   89999999999999999999999


Q ss_pred             eEEccCCCcccccCCCCceEE-ccCeEEecCCcEE
Q 018622          314 VVIVNKDDVQEADRPELGFYI-RSGITIIMEKATI  347 (353)
Q Consensus       314 ~~i~~~~~~~~~~~~~~~~~i-~~~~~vig~~~~i  347 (353)
                      ++++......     .++.+| ..|.++|+.++.+
T Consensus       390 ~~i~~~~~~~-----~~~~~~~~~~~~~i~~~~~~  419 (425)
T PRK00725        390 MVIGEDPEED-----AKRFRRSEEGIVLVTREMLD  419 (425)
T ss_pred             CEECCCCCCC-----CceeEecCccEEEECCCccc
Confidence            9997543221     122444 6677788887654

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=2e-40  Score=320.31  Aligned_cols=293  Identities=32%  Similarity=0.596  Sum_probs=237.8

Q ss_pred             CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      +.++++|||+||+++++++++   .+.++|+|++||++++.|+.+++++|+++++++|+++.+.+.+.+.+||++.+|++
T Consensus        94 ~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~  170 (407)
T PRK00844         94 GKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPD  170 (407)
T ss_pred             CCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCC
Confidence            346789999999999999973   12256999999999999999999999999999999998765444678999999988


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhC---CCCCchhhhhhhhhhhcC
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFGSEIIPAAIMEH  170 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~---~~~~~~~~d~l~~l~~~~  170 (353)
                      |+|..|.|||..+...  ..            ...+.++++|+|+|++++|..++++..   ....++.+|+++.+++++
T Consensus       171 g~v~~~~eKp~~~~~~--~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~  236 (407)
T PRK00844        171 GRIRGFLEKPADPPGL--PD------------DPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERG  236 (407)
T ss_pred             CCEEEEEECCCCcccc--cC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccC
Confidence            9999999999754310  00            002468999999999999866666422   123567789999999999


Q ss_pred             cEEEEEe------------cceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEec-e----eeece
Q 018622          171 DVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-C----RIKDA  233 (353)
Q Consensus       171 ~i~~~~~------------~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-~----~i~~~  233 (353)
                      ++.+|.+            +|||.|+|+|++|++|+++++++.+...++.+..++++.+...+|+.+.+ +    .+.++
T Consensus       237 ~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (407)
T PRK00844        237 RAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDS  316 (407)
T ss_pred             eEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeC
Confidence            9999976            59999999999999999999987665555666677777777777777642 2    56789


Q ss_pred             EECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCC
Q 018622          234 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD  313 (353)
Q Consensus       234 ~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~  313 (353)
                      +||++|.|+++.|.+|+||++|+|+++|.|++++++++                   ++|+++|.|.+|+|++++.|+++
T Consensus       317 ~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~  377 (407)
T PRK00844        317 LVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRGAVVRRAILDKNVVVPPG  377 (407)
T ss_pred             EEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCCCEEEeeEECCCCEECCC
Confidence            99999999878899999999999999999999999988                   89999999999999999999999


Q ss_pred             eEEccCCCcccccCCCCceEEc-cCeEEecCCcEE
Q 018622          314 VVIVNKDDVQEADRPELGFYIR-SGITIIMEKATI  347 (353)
Q Consensus       314 ~~i~~~~~~~~~~~~~~~~~i~-~~~~vig~~~~i  347 (353)
                      +++.+..     ..-+.+..|. ++.++|+.|++|
T Consensus       378 ~~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~  407 (407)
T PRK00844        378 ATIGVDL-----EEDRRRFTVSEGGIVVVPKGQRV  407 (407)
T ss_pred             CEECCCc-----cccccceEeccceEEEeCCCCCC
Confidence            9998741     1113356664 777777877754

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=1e-36  Score=290.60  Aligned_cols=269  Identities=46%  Similarity=0.821  Sum_probs=219.7

Q ss_pred             CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      ++++++||+++++++.+++++   ..+++|+|++||++++.++.++++.|+++++++|+++.+.+.+.+..||++.+|++
T Consensus        88 ~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~  164 (361)
T TIGR02091        88 GTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDED  164 (361)
T ss_pred             CCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCC
Confidence            446789999999999999963   12468999999999999999999999998888999888775444678999999888


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhcC
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIMEH  170 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~~  170 (353)
                      ++|..|.|||..+....        . .+     ...++++|+|+|++++|..++++...   ...++.+++++.+++++
T Consensus       165 ~~v~~~~ekp~~~~~~~--------~-~~-----~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~  230 (361)
T TIGR02091       165 GRIVDFEEKPANPPSIP--------G-MP-----DFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEG  230 (361)
T ss_pred             CCEEEEEECCCCccccc--------c-cc-----cccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcC
Confidence            99999999985442100        0 00     12489999999999998656664321   23456678999999999


Q ss_pred             cEEEEEecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecC-CCCCCCeEEec-eeeeceEECCCcEECceEEee
Q 018622          171 DVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTS-PRFLPPTKIDN-CRIKDAIISHGCFLRECTVEH  248 (353)
Q Consensus       171 ~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~-~~i~~~~~i~~-~~i~~~~ig~~~~i~~~~v~~  248 (353)
                      ++++|.++++|.|+|||++|++|+++++.+.+..........+.+. ..+.+++++++ +.+.++.||++|+|+++.+.+
T Consensus       231 ~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~I~~~~v~~  310 (361)
T TIGR02091       231 SVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISGATVSH  310 (361)
T ss_pred             ceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECCCCEECCCEEEc
Confidence            9999999999999999999999999999876544333344444432 34667778875 678899999999999668899


Q ss_pred             eEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEcc
Q 018622          249 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       249 ~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~  318 (353)
                      |+|+++|.|+++|+|.+|+++++                   +.|++++.|.+|+||+++.|++++.++|
T Consensus       311 s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~~  361 (361)
T TIGR02091       311 SVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN  361 (361)
T ss_pred             cEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeCC
Confidence            99999999999999999999988                   8999999999999999999999998864

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.4e-37  Score=289.56  Aligned_cols=272  Identities=26%  Similarity=0.452  Sum_probs=212.0

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC-C
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM-G   94 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~-g   94 (353)
                      ..++|||++|+++++++..      ++|+|++||+++++|+++++++|+++++.+|++..+++.  ++.||++..+++ +
T Consensus        81 ~~~lGTag~l~~a~~~l~~------~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~--~~~~Gvv~~~~~~~  152 (358)
T COG1208          81 KEPLGTAGALKNALDLLGG------DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD--PSEFGVVETDDGDG  152 (358)
T ss_pred             CCcCccHHHHHHHHHhcCC------CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC--CCcCceEEecCCCc
Confidence            4489999999999999972      799999999999999999999999998889999888876  478999998744 5


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCc-EE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHD-VQ  173 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~-i~  173 (353)
                      +|.+|.|||..+..                   .++++|+|+|+|+|++|+ +++.  ....+|..+++|.+++++. ++
T Consensus       153 ~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~~~~~~~~~l~~~~~~v~  210 (358)
T COG1208         153 RVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFDFEEELLPALAAKGEDVY  210 (358)
T ss_pred             eEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCcccchhhHHHHHHhCCCcEE
Confidence            99999999953111                   257999999999999998 3332  2345666689999999987 99


Q ss_pred             EEEecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCc---eecCCCCCCCeEEeceeeeceEECCCcEECceEEeeeE
Q 018622          174 AYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTP---FYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSI  250 (353)
Q Consensus       174 ~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~---i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v~~~~  250 (353)
                      +|.++++|.|+|+|++|++|+..+++......+......   +.. +.+.+|++|+.    ++.|+++|.|+    .+++
T Consensus       211 ~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~----~~~i~~~~~i~----~~~~  281 (358)
T COG1208         211 GYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGP----GAKIGPGALIG----PYTV  281 (358)
T ss_pred             EEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECC----CCEECCCCEEC----CCcE
Confidence            999999999999999999999999864322211000000   111 22333333332    34444444444    3699


Q ss_pred             EcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCC
Q 018622          251 VGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL  330 (353)
Q Consensus       251 ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~  330 (353)
                      ||++|.||+++.|.+|+++++                   ++|+++++|.+|+|+++|+||++. .     +++ +.++.
T Consensus       282 ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~~-~-----i~d-~~~g~  335 (358)
T COG1208         282 IGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGASL-I-----IGD-VVIGI  335 (358)
T ss_pred             ECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCce-e-----ecc-eEecC
Confidence            999999999999999999999                   899999999999999999999922 2     667 77887


Q ss_pred             ceEEccCeEEecCCcEECCCccC
Q 018622          331 GFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       331 ~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      ++.+..+ +++++++.++++.++
T Consensus       336 ~~~i~~g-~~~~~~~~~~~~~~~  357 (358)
T COG1208         336 NSEILPG-VVVGPGSVVESGEIE  357 (358)
T ss_pred             ceEEcCc-eEeCCCccccCcccc
Confidence            7888777 566888888877653

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.1e-37  Score=286.77  Aligned_cols=314  Identities=22%  Similarity=0.255  Sum_probs=245.6

Q ss_pred             CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECC
Q 018622           15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN   92 (353)
Q Consensus        15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~   92 (353)
                      |..++|||||+++|+++|.+   ..++++||++||+  +....|++|++.|...++.+|+++...++  |..||.+..++
T Consensus        74 Q~eqlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~d--P~GYGRIvr~~  148 (460)
T COG1207          74 QEEQLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDD--PTGYGRIVRDG  148 (460)
T ss_pred             ecccCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCC--CCCcceEEEcC
Confidence            46799999999999999942   2456799999999  34556889999999999999999999888  89999999998


Q ss_pred             CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhc
Q 018622           93 MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIME  169 (353)
Q Consensus        93 ~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~  169 (353)
                      +|+|..+.|..+..+.++                 ....+|+|+|+|+.+.|.++|.+...+   .+.|++|++..+..+
T Consensus       149 ~g~V~~IVE~KDA~~eek-----------------~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~  211 (460)
T COG1207         149 NGEVTAIVEEKDASEEEK-----------------QIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNE  211 (460)
T ss_pred             CCcEEEEEEcCCCCHHHh-----------------cCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhC
Confidence            999999998765443211                 246899999999999888888875432   245678888777655


Q ss_pred             -CcEEEEEecce--EeEcCCHHHHHHHHHhhccCC-------------CcccccCCCCceecCCCCCCC-----------
Q 018622          170 -HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES-------------PAFHFYDPKTPFYTSPRFLPP-----------  222 (353)
Q Consensus       170 -~~i~~~~~~g~--w~dIgtp~~y~~a~~~ll~~~-------------~~~~~~~~~~~i~~~~~i~~~-----------  222 (353)
                       .++.++..+.+  ..-+++...+.++++.+.++.             |...+++.+..+.+++.|.|+           
T Consensus       212 g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~  291 (460)
T COG1207         212 GEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGD  291 (460)
T ss_pred             CCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECC
Confidence             68888888754  567888888888877665542             222233334444444444443           


Q ss_pred             -eEEec-eeeeceEECCCcEECc-eEEeeeEEcCCcEECCCCEEeceEEECC-ccccchhHHH-HhhcCCCcceEeCCCe
Q 018622          223 -TKIDN-CRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGA-DYYQTESEIA-SLLAEGKVPIGVGRNT  297 (353)
Q Consensus       223 -~~i~~-~~i~~~~ig~~~~i~~-~~v~~~~ig~~~~ig~~~~i~~~v~~~~-~~~~~~~~~~-~~~~~~~~~~~ig~~~  297 (353)
                       +.|+. +.|++|.|+++|.|.. +.+.+|.|+++|.||+.++|++...++. .+++.|+|.+ +.++.+   ++++|-+
T Consensus       292 ~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~g---sKa~HLt  368 (460)
T COG1207         292 NVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKG---SKAGHLT  368 (460)
T ss_pred             ceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCC---cccccee
Confidence             33432 5555666777777763 6777888999999999999998877775 5689999985 888888   8999999


Q ss_pred             EEcceEeCCCCEECCCeEEccCCCcc-cccCCCCceEEccCeE-----EecCCcEECCCccC
Q 018622          298 KIRNCIIDKNVKIGKDVVIVNKDDVQ-EADRPELGFYIRSGIT-----IIMEKATIEDGMVI  353 (353)
Q Consensus       298 ~i~~~iig~~~~Ig~~~~i~~~~~~~-~~~~~~~~~~i~~~~~-----vig~~~~i~~g~vv  353 (353)
                      +|.++.||+++.||++++.+|+++.. ..+.||++++|+++..     .||+++.|++||+|
T Consensus       369 YlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI  430 (460)
T COG1207         369 YLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI  430 (460)
T ss_pred             eeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence            99999999999999999999999865 6789999999998854     38999999999986

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=100.00  E-value=2.4e-35  Score=281.90  Aligned_cols=257  Identities=23%  Similarity=0.412  Sum_probs=207.3

Q ss_pred             cccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcc-eEEEECCCCCee
Q 018622           19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDY-GLVKIDNMGRIA   97 (353)
Q Consensus        19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~-g~v~~d~~g~V~   97 (353)
                      .|+++++++|++++++   ..+++|+|++||+++++||.+++++|+++++++|+++.+++++.+..| +++..|++|++.
T Consensus        96 tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~  172 (369)
T TIGR02092        96 EGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVK  172 (369)
T ss_pred             cChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEE
Confidence            3667779999999852   124789999999999999999999999999999999988763235678 456677778888


Q ss_pred             EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-CCchhhhhhhhhhhcCcEEEEE
Q 018622           98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SNDFGSEIIPAAIMEHDVQAYI  176 (353)
Q Consensus        98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~~~~~~d~l~~l~~~~~i~~~~  176 (353)
                      .|.+++..+.                     ..++++|+|+|++++|..++++..+. ..++..++++.++++.++++|.
T Consensus       173 ~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~  231 (369)
T TIGR02092       173 SIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAYE  231 (369)
T ss_pred             eccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEe
Confidence            7754332211                     24678999999999886666543322 2244568899888888999999


Q ss_pred             ecceEeEcCCHHHHHHHHHhhccCCCccccc-CCCCceecCCCCCCCeEEec-eeeeceEECCCcEECceEEeeeEEcCC
Q 018622          177 FRDYWEDIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLRECTVEHSIVGER  254 (353)
Q Consensus       177 ~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~-~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~  254 (353)
                      ++++|.|+|||++|++|++++++.+.....+ ....+++....+.+|++|+. +.|.+|+||++|+|+ +.|.+|+|+++
T Consensus       232 ~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~~~~i~-~~v~~s~i~~~  310 (369)
T TIGR02092       232 YTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIE-GKVENSILSRG  310 (369)
T ss_pred             cCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcCCCEEe-eEEeCCEECCC
Confidence            9999999999999999999999875433222 22335555555678999975 888999999999998 67899999999


Q ss_pred             cEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622          255 SRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       255 ~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~  319 (353)
                      |.|+++|.|.+++++++                   +.|++++.+.+|+||+++.||+++.+.+.
T Consensus       311 ~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~~~~~~~~  356 (369)
T TIGR02092       311 VHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEPNVKIAGT  356 (369)
T ss_pred             CEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence            99999999999999998                   89999999999999999999999999765

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=1.8e-34  Score=284.77  Aligned_cols=312  Identities=18%  Similarity=0.200  Sum_probs=220.4

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      ++++||+++|+++++++.+   ..+++|+|++||.  +...+++++++.|++.+++++++..+..+  +..||.+..|++
T Consensus        78 ~~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~--p~~yg~~~~~~~  152 (482)
T PRK14352         78 DEQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDD--PTGYGRILRDQD  152 (482)
T ss_pred             CCCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCC--CCCCCEEEECCC
Confidence            5678999999999998852   2346799999998  34678999999999888888888777655  678999988888


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcC
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEH  170 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~  170 (353)
                      ++|.+|.|||.....+                 ....++++|+|+|++++|..++++....   ...+.+|+++.+++++
T Consensus       153 g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g  215 (482)
T PRK14352        153 GEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAG  215 (482)
T ss_pred             CCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCC
Confidence            9999999998754311                 0135789999999999997766543321   2234679999999875


Q ss_pred             -cEEEEEecceEeEcCCHHHH------HHHHHhhccCC---------Ccccc------------cCCCCceecCCCCCCC
Q 018622          171 -DVQAYIFRDYWEDIGTIKSF------YEANMALTKES---------PAFHF------------YDPKTPFYTSPRFLPP  222 (353)
Q Consensus       171 -~i~~~~~~g~w~dIgtp~~y------~~a~~~ll~~~---------~~~~~------------~~~~~~i~~~~~i~~~  222 (353)
                       ++.+|.++++|.|+|+++.|      ..+++.++...         +...+            +++.+.+.+.+.|+++
T Consensus       216 ~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~  295 (482)
T PRK14352        216 HRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGED  295 (482)
T ss_pred             CeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCC
Confidence             89999999999999999888      44555444331         00001            1122222233333344


Q ss_pred             eEEec-eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCc-cccchhHH-HHhhcCCCcceEeCCCeEE
Q 018622          223 TKIDN-CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD-YYQTESEI-ASLLAEGKVPIGVGRNTKI  299 (353)
Q Consensus       223 ~~i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~-~~~~~~~~-~~~~~~~~~~~~ig~~~~i  299 (353)
                      +.|+. +.|++++||++|.|+++.+.+++|++++.||+++.+...++++.+ .++.+++. .++++++   +.|++.+.+
T Consensus       296 ~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~---~~i~~~~~i  372 (482)
T PRK14352        296 AVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRG---TKVPHLTYV  372 (482)
T ss_pred             CEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCC---cEEccCcee
Confidence            44432 445556666666666555667888888888888888765555543 34555543 3566666   788888888


Q ss_pred             cceEeCCCCEECCCeEEccC-------CCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          300 RNCIIDKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       300 ~~~iig~~~~Ig~~~~i~~~-------~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      .+++||++|.||+++++.+.       ..+++.+++|.++.|..+ +.||++++|++|++|
T Consensus       373 ~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v  432 (482)
T PRK14352        373 GDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVI  432 (482)
T ss_pred             cccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEE
Confidence            89999999999999988764       335555566666666555 356999999999875

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=3.5e-34  Score=281.29  Aligned_cols=315  Identities=20%  Similarity=0.262  Sum_probs=219.4

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      +.++||+++|+++++++++    .+++|+|++||+  +.+.++++++++|.+++++++++..+.++  +..||.+.+|++
T Consensus        76 ~~~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~--~~~~g~v~~d~~  149 (459)
T PRK14355         76 EEQLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLEN--PFGYGRIVRDAD  149 (459)
T ss_pred             CCCCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcCCEEEEcCC
Confidence            5578999999999999963    246899999998  55788999999999888889988877655  567999999888


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcC
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEH  170 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~  170 (353)
                      ++|..|.|||.....+                 ..++++++|+|+|++++|...+++..+.   ...+.+|+++.+++++
T Consensus       150 g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g  212 (459)
T PRK14355        150 GRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEG  212 (459)
T ss_pred             CCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCC
Confidence            9999999987432110                 0136889999999999875566543321   2234678999999875


Q ss_pred             -cEEEEEecce--EeEcCCHHHHHHHHHhhccCCC------cccccCCCC-ceecCCCCCCCeEEec-eeee-ceEECCC
Q 018622          171 -DVQAYIFRDY--WEDIGTIKSFYEANMALTKESP------AFHFYDPKT-PFYTSPRFLPPTKIDN-CRIK-DAIISHG  238 (353)
Q Consensus       171 -~i~~~~~~g~--w~dIgtp~~y~~a~~~ll~~~~------~~~~~~~~~-~i~~~~~i~~~~~i~~-~~i~-~~~ig~~  238 (353)
                       ++.+|+++++  |+|+|+|++|++|++.++....      ...++++.. .+.+++.+++++.|+. +.|. ++.||++
T Consensus       213 ~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~  292 (459)
T PRK14355        213 LRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEG  292 (459)
T ss_pred             CeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCC
Confidence             7999999987  9999999999999875554311      111344443 3556666666666653 5554 5888888


Q ss_pred             cEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCC--------cceEeCCC------eEEcc
Q 018622          239 CFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGK--------VPIGVGRN------TKIRN  301 (353)
Q Consensus       239 ~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~--------~~~~ig~~------~~i~~  301 (353)
                      |.|+ ++.|.+|+||++|+|+.+|+|.++++.++..++....+  .+.++++.        -.+.||.+      +++.+
T Consensus       293 ~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig~  372 (459)
T PRK14355        293 CTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLGD  372 (459)
T ss_pred             CEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCceeeeeccccC
Confidence            8888 67788888888888888888888777666555444322  23333330        00222222      23345


Q ss_pred             eEeCCCCEECCCeEEccCCCcc-cccCCCCceEEccCe-----EEecCCcEECCCccC
Q 018622          302 CIIDKNVKIGKDVVIVNKDDVQ-EADRPELGFYIRSGI-----TIIMEKATIEDGMVI  353 (353)
Q Consensus       302 ~iig~~~~Ig~~~~i~~~~~~~-~~~~~~~~~~i~~~~-----~vig~~~~i~~g~vv  353 (353)
                      +.||++|.||+++++.+.++.. ..+.||+++.|+.++     +.||++++|++||+|
T Consensus       373 ~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v  430 (459)
T PRK14355        373 ATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV  430 (459)
T ss_pred             CEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence            7888888888888776543322 234455555554443     346899999988875

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=100.00  E-value=2.4e-33  Score=266.48  Aligned_cols=249  Identities=19%  Similarity=0.316  Sum_probs=183.9

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      ++++||+++|+++++++++      ++|++++||++++.++.+++++|+++++++|+++.+.++  +..||++.+|++++
T Consensus        80 ~~~~G~~~al~~a~~~l~~------~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~--~~~~g~~~~~~~~~  151 (353)
T TIGR01208        80 GEPLGLAHAVYTARDFLGD------DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD--PTAFGVAVLEDGKR  151 (353)
T ss_pred             CCCCCHHHHHHHHHHhcCC------CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC--hhhCeEEEEcCCCc
Confidence            4578999999999999862      689999999999999999999999999999999988765  57899998876678


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--CCchhhhhhhhhhhc-CcE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIME-HDV  172 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~~~~~~d~l~~l~~~-~~i  172 (353)
                      |.+|.|||..+.                     +.++++|+|+|++.+++ .+++..+.  ...+..++++.++++ .++
T Consensus       152 v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~l~d~l~~l~~~g~~v  209 (353)
T TIGR01208       152 ILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELEITDAIQWLIEKGYKV  209 (353)
T ss_pred             EEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEEHHHHHHHHHHcCCeE
Confidence            999999987542                     36889999999998776 45443321  122356899999877 479


Q ss_pred             EEEEecceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEec-eeeeceEECCCcEEC-ceEEeeeE
Q 018622          173 QAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSI  250 (353)
Q Consensus       173 ~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~  250 (353)
                      .+|.++++|.|+|||++|++|++.++.+.. ..+.    .+.+++.+.+|++|+. +.|.+++|+++|.|+ ++.|.+++
T Consensus       210 ~~~~~~g~w~digt~~dl~~a~~~ll~~~~-~~~~----~i~~~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~  284 (353)
T TIGR01208       210 GGSKVTGWWKDTGKPEDLLDANRLILDEVE-REVQ----GVDDESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSY  284 (353)
T ss_pred             EEEEeCcEEEeCCCHHHHHHHHHHHHhhcc-cccC----CcCCCCEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcE
Confidence            999999999999999999999999997432 1111    1344455556666653 555555555555555 45555666


Q ss_pred             EcCCcEECCCCEEe-----ceEEECCccccchhHHHHhhcCCCcceEeCCC-eEEcceEeCCCCEECCCeEEcc
Q 018622          251 VGERSRLDYGVELK-----DTVMLGADYYQTESEIASLLAEGKVPIGVGRN-TKIRNCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       251 ig~~~~ig~~~~i~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~-~~i~~~iig~~~~Ig~~~~i~~  318 (353)
                      |+++|+||++|+|+     +++++.+                   +.|+++ +++.++++++++.|++++.+.+
T Consensus       285 i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~~i~~~~~~~~  339 (353)
T TIGR01208       285 IGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKVRIKGNRRRPG  339 (353)
T ss_pred             ECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCCEECCCccccc
Confidence            66666666666665     3443333                   566666 3666777777777777776653

Alternate name: dTDP-D-glucose synthase

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=5.8e-33  Score=273.40  Aligned_cols=314  Identities=17%  Similarity=0.224  Sum_probs=203.3

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      ++++||+++++.++++++.    .+++|+|++||+  +.+.++++++++|+++++++|+++.++++  +++||++.+|++
T Consensus        79 ~~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~--~~~yG~v~~d~~  152 (481)
T PRK14358         79 EQQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPD--ATGYGRIVRGAD  152 (481)
T ss_pred             CCcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCC--CCCceEEEECCC
Confidence            5678999999999998852    235699999998  55778999999999999999999888775  567999999988


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhC---CCCCchhhhhhhhhhhcC
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFGSEIIPAAIMEH  170 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~---~~~~~~~~d~l~~l~~~~  170 (353)
                      |+|.+|.|||..+..+                 ...+++++|+|+|++++++ +++...   .....+++|+++.+++++
T Consensus       153 g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~~-~~~~i~~~~~~ge~~l~d~i~~~~~~g  214 (481)
T PRK14358        153 GAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAPE-LARRIGNDNKAGEYYLTDLLGLYRAGG  214 (481)
T ss_pred             CCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHHH-HHHhcCCCccCCeEEHHHHHHHHHHCC
Confidence            9999999998743211                 0135789999999966533 333221   111233578999998875


Q ss_pred             -cEEEEEecceEeEcCCHHHHHHHHHh-hccCCCc-------ccccCCCCc-eecCCCCCCCeEEec-eeee-ceEECCC
Q 018622          171 -DVQAYIFRDYWEDIGTIKSFYEANMA-LTKESPA-------FHFYDPKTP-FYTSPRFLPPTKIDN-CRIK-DAIISHG  238 (353)
Q Consensus       171 -~i~~~~~~g~w~dIgtp~~y~~a~~~-ll~~~~~-------~~~~~~~~~-i~~~~~i~~~~~i~~-~~i~-~~~ig~~  238 (353)
                       ++.+|.++++|..++.-..|+.++++ +++....       ..+.+|... +.+.+.|++++.|.+ +.|. ++.||++
T Consensus       215 ~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~  294 (481)
T PRK14358        215 AQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADG  294 (481)
T ss_pred             CeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCC
Confidence             69999999999998888777666654 4432110       011122211 123333444444432 3343 3556666


Q ss_pred             cEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHH--HhhcCCCc--------------ceEeCCCeEEcc
Q 018622          239 CFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIA--SLLAEGKV--------------PIGVGRNTKIRN  301 (353)
Q Consensus       239 ~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~--~~~~~~~~--------------~~~ig~~~~i~~  301 (353)
                      |.|+ ++.|.+|+|+++|.|+++++|.++++..+..++..+.+.  +.++++..              .+.+|+.+.+.+
T Consensus       295 ~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~  374 (481)
T PRK14358        295 VTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYLGD  374 (481)
T ss_pred             CEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCcccCceEEECC
Confidence            6666 455666666666666666666655555544444444331  33333300              034444455567


Q ss_pred             eEeCCCCEECCCeEEccCCCcc-cccCCCCceEEccCe-----EEecCCcEECCCccC
Q 018622          302 CIIDKNVKIGKDVVIVNKDDVQ-EADRPELGFYIRSGI-----TIIMEKATIEDGMVI  353 (353)
Q Consensus       302 ~iig~~~~Ig~~~~i~~~~~~~-~~~~~~~~~~i~~~~-----~vig~~~~i~~g~vv  353 (353)
                      ++||++|.||.++++.+..+.. ..+.||+++.|+.++     +.||++++|++|++|
T Consensus       375 ~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v  432 (481)
T PRK14358        375 VTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV  432 (481)
T ss_pred             eEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence            8899999999999888753321 234555555554443     247888888888864

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=8.1e-33  Score=271.50  Aligned_cols=307  Identities=19%  Similarity=0.237  Sum_probs=212.8

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      +.++||+++|+.++.++.+     +++|++++||.  +.+.++.++++.|.+.+  +++++.+.++  +.+||++.. ++
T Consensus        77 ~~~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~~--~~~yG~v~~-~~  146 (456)
T PRK09451         77 AEQLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLDN--PTGYGRITR-EN  146 (456)
T ss_pred             CCCCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcCC--CCCceEEEe-cC
Confidence            4578999999999998852     37899999998  56788999998886544  4566666554  577999855 57


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhc-
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIME-  169 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~-  169 (353)
                      ++|.+|.|||.....+                 ..++++++|+|+|+++.|..++++..+.   ...+.+|+++.++++ 
T Consensus       147 g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g  209 (456)
T PRK09451        147 GKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEG  209 (456)
T ss_pred             CeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCC
Confidence            8999999998643210                 0135899999999999997677654321   233567999999988 


Q ss_pred             CcEEEEE------ecce--EeEcCCHHHHHHHHH--hhccC-----CCc-cc-----------ccCCCCceecCCCCCCC
Q 018622          170 HDVQAYI------FRDY--WEDIGTIKSFYEANM--ALTKE-----SPA-FH-----------FYDPKTPFYTSPRFLPP  222 (353)
Q Consensus       170 ~~i~~~~------~~g~--w~dIgtp~~y~~a~~--~ll~~-----~~~-~~-----------~~~~~~~i~~~~~i~~~  222 (353)
                      .++.+|.      ++|+  |.|++++++|+++++  .++..     .|. ..           .+++...+.+.+.++++
T Consensus       210 ~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~  289 (456)
T PRK09451        210 REIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNR  289 (456)
T ss_pred             CeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCC
Confidence            5899986      4666  788999999999874  23221     111 10           22334444444555666


Q ss_pred             eEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEe-ceEEECCccccchhHH-HHhhcCCCcceEeCCCeE
Q 018622          223 TKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTK  298 (353)
Q Consensus       223 ~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~-~~v~~~~~~~~~~~~~-~~~~~~~~~~~~ig~~~~  298 (353)
                      +.|+. +.|+++.|+++|.|+ ++.+.+|+||++|.|++++.|. ++++.++..++.++++ .+.++++   +.+++.+.
T Consensus       290 ~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~---~~~~~~~~  366 (456)
T PRK09451        290 VKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKG---SKAGHLTY  366 (456)
T ss_pred             CEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCC---CccCcccc
Confidence            66653 666677778888887 6777777777788887777776 3444444445555555 3555555   56677777


Q ss_pred             EcceEeCCCCEECCCeEEccCCC-------cccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          299 IRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       299 i~~~iig~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +.+|.||++|.||+++++.+..+       +++.+.+|.++.|..++ .||++++|++|++|
T Consensus       367 ~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~-~ig~~~~i~~gs~v  427 (456)
T PRK09451        367 LGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPV-TVGKGATIGAGTTV  427 (456)
T ss_pred             ccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCc-EECCCCEECCCCEE
Confidence            77889999999999998876433       44555555555554442 46888999888875

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=100.00  E-value=8.7e-32  Score=264.00  Aligned_cols=307  Identities=19%  Similarity=0.222  Sum_probs=195.5

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      .++||+++++++++++++     +++|++++||.  +...++++++++|.+.  .+++++.+.++  +..|+.+..|+++
T Consensus        73 ~~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~~--~~~~g~v~~d~~g  143 (451)
T TIGR01173        73 EQLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLPD--PTGYGRIIRENDG  143 (451)
T ss_pred             CCCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecCC--CCCCCEEEEcCCC
Confidence            357999999999999862     36899999998  4567899999998664  36777776654  5679999998889


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcC-
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEH-  170 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~-  170 (353)
                      +|..|.|||......                 ....++++|+|+|++++|..+++.....   ...+..++++.+++++ 
T Consensus       144 ~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~  206 (451)
T TIGR01173       144 KVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGE  206 (451)
T ss_pred             CEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCC
Confidence            999999997643210                 0125789999999999976666553321   1233568899988774 


Q ss_pred             cEEEEEecce--EeEcCCHHHHHHHHHhhccCCCc--------c-----------------cccCCCCceecCCCCCCCe
Q 018622          171 DVQAYIFRDY--WEDIGTIKSFYEANMALTKESPA--------F-----------------HFYDPKTPFYTSPRFLPPT  223 (353)
Q Consensus       171 ~i~~~~~~g~--w~dIgtp~~y~~a~~~ll~~~~~--------~-----------------~~~~~~~~i~~~~~i~~~~  223 (353)
                      ++.+|.++++  |.++++|++|.+++..+..+.+.        +                 ..+++.+.+.+.+.|++++
T Consensus       207 ~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~  286 (451)
T TIGR01173       207 TVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDV  286 (451)
T ss_pred             eEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCC
Confidence            7999999987  99999999998886544432100        0                 0111112222222223333


Q ss_pred             EEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEE-CCccccchhHHH-HhhcCCCcceEeCCCeEE
Q 018622          224 KIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVML-GADYYQTESEIA-SLLAEGKVPIGVGRNTKI  299 (353)
Q Consensus       224 ~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~-~~~~~~~~~~~~-~~~~~~~~~~~ig~~~~i  299 (353)
                      .|+. +.++++.|+++|.|+ ++.+.+++||++|.||++++|.+..++ ++..++..++.. +.++++   +.|++.+.+
T Consensus       287 ~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~---~~i~~~~~i  363 (451)
T TIGR01173       287 VIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKG---SKAGHLSYL  363 (451)
T ss_pred             EECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCC---cEecceeeE
Confidence            3322 444455555555555 455555566666666665555542222 233344433332 334444   455555556


Q ss_pred             cceEeCCCCEECCCeEEccC-------CCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          300 RNCIIDKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       300 ~~~iig~~~~Ig~~~~i~~~-------~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      .+|.||+++.||+++++.+.       ..+++.+.+|.++.|..+ +.||++++|++|++|
T Consensus       364 ~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~g~~v  423 (451)
T TIGR01173       364 GDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTV  423 (451)
T ss_pred             eeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECC-cEECCCCEEccCCEE
Confidence            66888888888888888763       234444555555555444 357999999999875

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=5.7e-31  Score=256.70  Aligned_cols=296  Identities=20%  Similarity=0.271  Sum_probs=215.5

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCe
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI   96 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V   96 (353)
                      .++||++++++++.        ..++|++++||..+.  ..+.++.+.+.++++++++.+.++  +..||.+..| +|+|
T Consensus        78 ~~~gt~~al~~~~~--------~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~--~~~~g~v~~d-~g~v  144 (430)
T PRK14359         78 NYPGTGGALMGIEP--------KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD--PKGYGRVVIE-NGQV  144 (430)
T ss_pred             cCCCcHHHHhhccc--------CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC--CccCcEEEEc-CCeE
Confidence            46799999987432        137899999998432  234556666677888888887765  5679988875 6899


Q ss_pred             eEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-CcE
Q 018622           97 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME-HDV  172 (353)
Q Consensus        97 ~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~-~~i  172 (353)
                      ..+.|+|......                 ...+++++|+|+|++++|..+++....   ....+.+|+++.++++ .++
T Consensus       145 ~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v  207 (430)
T PRK14359        145 KKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETI  207 (430)
T ss_pred             EEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeE
Confidence            9999987542210                 013578999999999999876554321   1223467888888876 689


Q ss_pred             EEEEec-ceEeEcCCHHHHHHHHHhhccCCC-c------------ccccCCCCceecCCCCCCCeEEec-eeeeceEECC
Q 018622          173 QAYIFR-DYWEDIGTIKSFYEANMALTKESP-A------------FHFYDPKTPFYTSPRFLPPTKIDN-CRIKDAIISH  237 (353)
Q Consensus       173 ~~~~~~-g~w~dIgtp~~y~~a~~~ll~~~~-~------------~~~~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~  237 (353)
                      .+|.++ ++|.|+++|++|++|+..+..+.. .            -.++.++..+.+.+.+++++.|.+ +.++++.|++
T Consensus       208 ~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~  287 (430)
T PRK14359        208 KAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSHIKA  287 (430)
T ss_pred             EEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEEeeEECC
Confidence            999997 589999999999999865543311 0            112345556666677788888864 7788999999


Q ss_pred             CcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHH-HhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEE
Q 018622          238 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI  316 (353)
Q Consensus       238 ~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i  316 (353)
                      +|.|+++.+.+|+||++++|+++++|+++.+.++.      +++ +++ ++   ++||+++.|.+|+||++|.||+++++
T Consensus       288 ~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~------~i~~~~~-~~---~~i~~~~~i~d~~Ig~~~~ig~~~~~  357 (430)
T PRK14359        288 HSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFV------ETKNAKL-NG---VKAGHLSYLGDCEIDEGTNIGAGTIT  357 (430)
T ss_pred             CCEEeccEEeCCEECCCCEECCCcEEeccEEcCcE------EEcccEe-cc---ccccccccccCCEECCCCEECCCceE
Confidence            99998888899999999999999998876655542      222 233 44   79999999999999999999999999


Q ss_pred             ccCCC-------cccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          317 VNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       317 ~~~~~-------~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      .+...       +++.+.+|.++.|..+ +.||++++|++|++|
T Consensus       358 ~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~~g~~v  400 (430)
T PRK14359        358 CNYDGKKKHKTIIGKNVFIGSDTQLVAP-VNIEDNVLIAAGSTV  400 (430)
T ss_pred             ccccCccCcCCEECCCeEEcCCCEEeCC-cEECCCCEECCCCEE
Confidence            87633       3444444444444444 347999999999875

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=4.9e-31  Score=259.00  Aligned_cols=310  Identities=17%  Similarity=0.210  Sum_probs=197.6

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      +.++||+++|+.+++++++   .+.++|++++||+  +...+++++++.|+  ++++++++.+.++  +..||++.. ++
T Consensus        77 ~~~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~--~~~~g~v~~-~~  148 (456)
T PRK14356         77 EQQLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPD--PGAYGRVVR-RN  148 (456)
T ss_pred             CCCCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCC--CCCceEEEE-cC
Confidence            4578999999999999963   2347899999998  44567899998875  6678888887766  678998877 57


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME-  169 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~-  169 (353)
                      |+|..|.|||+......          .     ..+.++++|+|+|++++|..+++....   ....+++++++.+++. 
T Consensus       149 g~V~~~~ek~~~~~~~~----------~-----~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g  213 (456)
T PRK14356        149 GHVAAIVEAKDYDEALH----------G-----PETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEG  213 (456)
T ss_pred             CeEEEEEECCCCChHHh----------h-----hhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCC
Confidence            89999999986421100          0     014688999999999998766654321   1223457888888765 


Q ss_pred             CcEEEEEecc--eEeEcCCHHHHHHHHHhhccCCCccc--------------ccCCCCceecC------------CCCCC
Q 018622          170 HDVQAYIFRD--YWEDIGTIKSFYEANMALTKESPAFH--------------FYDPKTPFYTS------------PRFLP  221 (353)
Q Consensus       170 ~~i~~~~~~g--~w~dIgtp~~y~~a~~~ll~~~~~~~--------------~~~~~~~i~~~------------~~i~~  221 (353)
                      .++.+|.+.+  .|++++||++|.+++..+..+.. ..              ++++...+.++            +.+++
T Consensus       214 ~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~-~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~  292 (456)
T PRK14356        214 MNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIV-EKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIAR  292 (456)
T ss_pred             CeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHH-HHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECC
Confidence            4799999866  57999999999998866654311 11              11122122211            22233


Q ss_pred             CeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEec-eEEECCccccchhHHH-HhhcCCCcceEeCCCe
Q 018622          222 PTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEIA-SLLAEGKVPIGVGRNT  297 (353)
Q Consensus       222 ~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~-~v~~~~~~~~~~~~~~-~~~~~~~~~~~ig~~~  297 (353)
                      ++.|+. +.|++++|+++|+|+ ++.+.+++||++|.||++++|.+ +++.++..++..++++ ++++++   +.+++++
T Consensus       293 ~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~---~~i~~~~  369 (456)
T PRK14356        293 GAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKG---AKANHLT  369 (456)
T ss_pred             CCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCC---cEecccc
Confidence            333322 444455555555555 45555555555555555555553 3333333344444442 444455   5666666


Q ss_pred             EEcceEeCCCCEECCCeEEccCC-------CcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          298 KIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       298 ~i~~~iig~~~~Ig~~~~i~~~~-------~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      .+.+|+||+++.||+++.+.+..       .+++.++++.++.|..+ +.||++++|++|++|
T Consensus       370 ~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~-~~ig~~~~i~~~~~v  431 (456)
T PRK14356        370 YLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP-VTIGDGALVGAGSVI  431 (456)
T ss_pred             cccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC-cEECCCCEEcCCCEE
Confidence            66678888888888888765532       23344444444554444 347999999998875

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=6.1e-32  Score=236.94  Aligned_cols=250  Identities=19%  Similarity=0.276  Sum_probs=197.0

Q ss_pred             CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEEC-C
Q 018622           14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID-N   92 (353)
Q Consensus        14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d-~   92 (353)
                      +...++||||+|++-++.|-   ....+.|+|+|+|+.+++++++|++.|+.++..+||+..++..+.+++||.+.-| .
T Consensus        84 ~E~~plGtaGgLyhFrdqIl---~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~  160 (407)
T KOG1460|consen   84 REDNPLGTAGGLYHFRDQIL---AGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPS  160 (407)
T ss_pred             ccCCCCCcccceeehhhHHh---cCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCC
Confidence            34679999999999999886   3456889999999999999999999999999999999999988778999999988 4


Q ss_pred             CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHH---hh-------------CCCC-
Q 018622           93 MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR---WR-------------YPTS-  155 (353)
Q Consensus        93 ~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~---~~-------------~~~~-  155 (353)
                      .++|+++.|||...-                     ++.+++|+|+|++++|+.+-+   +.             .+.. 
T Consensus       161 t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~  219 (407)
T KOG1460|consen  161 TGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPA  219 (407)
T ss_pred             cCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCcc
Confidence            699999999998642                     589999999999999964321   10             0111 


Q ss_pred             --CchhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhccCCCcc--c-cc-CCC--CceecCCCCCCCeEEec
Q 018622          156 --NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAF--H-FY-DPK--TPFYTSPRFLPPTKIDN  227 (353)
Q Consensus       156 --~~~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~--~-~~-~~~--~~i~~~~~i~~~~~i~~  227 (353)
                        ..+.+|+|+.++..+++++|..+++|..|.|+..-+.|++.+|......  . +- .|.  +.|.+++.|+|.     
T Consensus       220 d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPs-----  294 (407)
T KOG1460|consen  220 DFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPS-----  294 (407)
T ss_pred             ceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCc-----
Confidence              2345789999999999999999999999999999999998888642111  0 11 111  223333333333     


Q ss_pred             eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCC
Q 018622          228 CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN  307 (353)
Q Consensus       228 ~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~  307 (353)
                           +.+.+.+.||    .|+.||.+++||+|++|+.|+++++                   +.|.+|+.+.+|+||.+
T Consensus       295 -----akvhptAkiG----PNVSIga~vrvg~GvRl~~sIIl~d-------------------~ei~enavVl~sIigw~  346 (407)
T KOG1460|consen  295 -----AKVHPTAKIG----PNVSIGANVRVGPGVRLRESIILDD-------------------AEIEENAVVLHSIIGWK  346 (407)
T ss_pred             -----ceeCCccccC----CCceecCCceecCCceeeeeeeccC-------------------cEeeccceEEeeeeccc
Confidence                 3344445555    3578888999999999999999998                   89999999999999999


Q ss_pred             CEECCCeEEccCC
Q 018622          308 VKIGKDVVIVNKD  320 (353)
Q Consensus       308 ~~Ig~~~~i~~~~  320 (353)
                      +.||.++.+.+..
T Consensus       347 s~iGrWaRVe~~p  359 (407)
T KOG1460|consen  347 SSIGRWARVEGIP  359 (407)
T ss_pred             ccccceeeecccc
Confidence            9999999888644

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.98  E-value=8.8e-31  Score=256.65  Aligned_cols=306  Identities=22%  Similarity=0.225  Sum_probs=192.1

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      +.++||+++++++++++++     +++|++++||.  +.+.+++++++.|+++++++|+++.+.++  +..||++..| +
T Consensus        70 ~~~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~--~~~~g~v~~d-~  141 (448)
T PRK14357         70 EEQLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLED--PTGYGRIIRD-G  141 (448)
T ss_pred             CCCCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCC--CCCcEEEEEc-C
Confidence            5678999999999999862     47899999997  56788999999999999999999988765  6789999887 6


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcC
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEH  170 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~  170 (353)
                      +++ .+.|||..+...                 ...+++++|+|+|++++|..++++....   ...+..|+++.+   .
T Consensus       142 g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~  200 (448)
T PRK14357        142 GKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---E  200 (448)
T ss_pred             CeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---h
Confidence            788 788876533210                 0135889999999999986666543221   112345777766   3


Q ss_pred             cEEEEEecce--EeEcCCHHHHHHHHHhhccCC------Cccc-------ccCCCCceecCCCCCCCeE-----------
Q 018622          171 DVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFH-------FYDPKTPFYTSPRFLPPTK-----------  224 (353)
Q Consensus       171 ~i~~~~~~g~--w~dIgtp~~y~~a~~~ll~~~------~~~~-------~~~~~~~i~~~~~i~~~~~-----------  224 (353)
                      ++.+|.+.++  |.++++|++|..+...+....      ....       ++++...|..++.+.|+++           
T Consensus       201 ~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~  280 (448)
T PRK14357        201 KVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDC  280 (448)
T ss_pred             heeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCc
Confidence            5889999898  667779999988765442110      0001       1222222333333333222           


Q ss_pred             -Eec-eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEE-ECCccccchhHHH-HhhcCCCcceEeCCCeEEc
Q 018622          225 -IDN-CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVM-LGADYYQTESEIA-SLLAEGKVPIGVGRNTKIR  300 (353)
Q Consensus       225 -i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~-~~~~~~~~~~~~~-~~~~~~~~~~~ig~~~~i~  300 (353)
                       |+. +.+.+|+||++|+|..+.+.+|+|++++.|++++.|+..++ .++..++..+.++ +.++++   +.+++.+.+.
T Consensus       281 ~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~---~~~~~~~~~~  357 (448)
T PRK14357        281 EIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGEN---TKAQHLTYLG  357 (448)
T ss_pred             EECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCC---cCcccccccc
Confidence             221 33334455555555444455666666666666666654333 3333334333332 334444   4555555566


Q ss_pred             ceEeCCCCEECCCeEEccCCCcc-cccCCCCceEEccCe-----EEecCCcEECCCccC
Q 018622          301 NCIIDKNVKIGKDVVIVNKDDVQ-EADRPELGFYIRSGI-----TIIMEKATIEDGMVI  353 (353)
Q Consensus       301 ~~iig~~~~Ig~~~~i~~~~~~~-~~~~~~~~~~i~~~~-----~vig~~~~i~~g~vv  353 (353)
                      +++||++|.||+++++.+..+.. ..++|+++++|+.++     +.||+++.|++|++|
T Consensus       358 ~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v  416 (448)
T PRK14357        358 DATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI  416 (448)
T ss_pred             CcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence            77888888888888776533211 234445444444443     346888888888875

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.98  E-value=1.6e-30  Score=254.72  Aligned_cols=305  Identities=18%  Similarity=0.199  Sum_probs=198.7

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe-EE-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~-i~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      +.++||+++++.++.+++.    .+++|++++||. +. ..+++++++ |.++++++++++.+..+  +..||.+.. ++
T Consensus        79 ~~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~~~~~~--~~~~g~~~~-~~  150 (446)
T PRK14353         79 KERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLGFRAAD--PTGYGRLIV-KG  150 (446)
T ss_pred             CCCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEEEEeCC--CCcceEEEE-CC
Confidence            4567999999999998852    137899999998 43 456788887 44567788888777654  678998887 56


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME-  169 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~-  169 (353)
                      ++|..+.|||......                 ....++++|+|+|+++.|..++++...   ....+..++++.+++. 
T Consensus       151 g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g  213 (446)
T PRK14353        151 GRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEG  213 (446)
T ss_pred             CeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCC
Confidence            8999999998642210                 013578999999999877556654322   1123456888888876 


Q ss_pred             CcEEEEEec-ceEeEcCCHHHHHHHHHhhccC--------C-----CcccccCCCCceecCCCCCCCeEEeceeeeceEE
Q 018622          170 HDVQAYIFR-DYWEDIGTIKSFYEANMALTKE--------S-----PAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAII  235 (353)
Q Consensus       170 ~~i~~~~~~-g~w~dIgtp~~y~~a~~~ll~~--------~-----~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~~~i  235 (353)
                      .++.++..+ +.|.||++|++|.+|+..+..+        .     +...++++...|.+++.+++++.|++    ++.|
T Consensus       214 ~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~----~~~i  289 (446)
T PRK14353        214 LRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGP----GVTV  289 (446)
T ss_pred             CeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECC----CCEE
Confidence            469999986 4699999999999888544322        0     11112223333333334444333332    4555


Q ss_pred             CCCcEEC-ceEEeeeEEcCCcEECCCCEEe-ceEEECCccccchhHHH-HhhcCCCcceEeCCCeEEcceEeCCCCEECC
Q 018622          236 SHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK  312 (353)
Q Consensus       236 g~~~~i~-~~~v~~~~ig~~~~ig~~~~i~-~~v~~~~~~~~~~~~~~-~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~  312 (353)
                      |++|.|+ ++.+.+++||++|+||++|.|. ++++.++..++..+++. ++++++   +.+++++.+.+++||++|.||+
T Consensus       290 g~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~---~~i~~~~~i~~~~ig~~~~Ig~  366 (446)
T PRK14353        290 ASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG---AKVNHLTYIGDATIGAGANIGA  366 (446)
T ss_pred             CCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---CEECCeeEEcCcEEcCCcEECC
Confidence            5555555 4555556666666666666665 33333333333333331 333333   6777777888899999999999


Q ss_pred             CeEEcc-------CCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          313 DVVIVN-------KDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       313 ~~~i~~-------~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      ++++.+       +..+++.++++.++.|..+ +.||++++|++|++|
T Consensus       367 ~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v  413 (446)
T PRK14353        367 GTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVI  413 (446)
T ss_pred             ceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEE
Confidence            988754       2345566666666666655 346999999998875

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.97  E-value=5e-30  Score=252.03  Aligned_cols=311  Identities=22%  Similarity=0.263  Sum_probs=205.2

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      ..++||+++++++++++++    .++.|++++||.  +.+.++++++++|++.++++|+++.+.++  +..|+.+..|++
T Consensus        73 ~~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~--~~~~g~v~~d~~  146 (458)
T PRK14354         73 EEQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAEN--PTGYGRIIRNEN  146 (458)
T ss_pred             CCCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCC--CCCceEEEEcCC
Confidence            4468999999999999862    136799999996  45678999999998888889988877654  567998888888


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhc-
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIME-  169 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~-  169 (353)
                      ++|..|.|||......                 ....++++|+|+|+++.|...+++....   ...+.+++++.++++ 
T Consensus       147 ~~V~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g  209 (458)
T PRK14354        147 GEVEKIVEQKDATEEE-----------------KQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEG  209 (458)
T ss_pred             CCEEEEEECCCCChHH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCC
Confidence            9999999987531100                 0135789999999998665565543221   122356888888866 


Q ss_pred             CcEEEEEecce--EeEcCCHHHHHHHHHhhccCC------CcccccCC-------CCceecC------------CCCCCC
Q 018622          170 HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDP-------KTPFYTS------------PRFLPP  222 (353)
Q Consensus       170 ~~i~~~~~~g~--w~dIgtp~~y~~a~~~ll~~~------~~~~~~~~-------~~~i~~~------------~~i~~~  222 (353)
                      .++.+|.++++  |+++.++++|.+|+..+..+.      +...++++       ...+.++            +.|+++
T Consensus       210 ~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~  289 (458)
T PRK14354        210 EKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGED  289 (458)
T ss_pred             CeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCC
Confidence            57999999876  456779999988875432210      11111222       2222222            222333


Q ss_pred             eEEec-eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEec-eEEECCccccchhHH-HHhhcCCCcceEeCCCeEE
Q 018622          223 TKIDN-CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKI  299 (353)
Q Consensus       223 ~~i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~-~v~~~~~~~~~~~~~-~~~~~~~~~~~~ig~~~~i  299 (353)
                      +.|+. +.|.+++|+++|.|+++++.+++||++|.||.+|.|.. +++.++..++..+.+ .+.++++   +.+++.+.+
T Consensus       290 ~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~---~~i~~~~~~  366 (458)
T PRK14354        290 CVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEG---TKVSHLTYI  366 (458)
T ss_pred             CEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCC---CEecceeee
Confidence            33322 44445666777777655666777777777777777774 333333334444444 2444555   566666677


Q ss_pred             cceEeCCCCEECCCeEEccCC-------CcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          300 RNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       300 ~~~iig~~~~Ig~~~~i~~~~-------~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      .+++||+++.||+++.+.+.+       .+++.++++.++.|..+ +.||++++||+|++|
T Consensus       367 ~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~-~~ig~~~~v~~~~~v  426 (458)
T PRK14354        367 GDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAP-VTVGDNAYIAAGSTI  426 (458)
T ss_pred             cCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCC-cEECCCCEECCCCEE
Confidence            778888888888888876632       23455555555666555 357999999999875

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.97  E-value=3e-29  Score=246.00  Aligned_cols=308  Identities=19%  Similarity=0.231  Sum_probs=213.1

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      +.++||+++++++++++++    .+++|+|++||.  +...+++++++.|++.++++++++.+.++  +..||.+.+|++
T Consensus        74 ~~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~~  147 (450)
T PRK14360         74 QPQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPN--PKGYGRVFCDGN  147 (450)
T ss_pred             CCcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCC--CCCccEEEECCC
Confidence            3467999999999998862    235799999998  56778999999999999888887776655  567999999988


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcC
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEH  170 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~  170 (353)
                      |+|..|.|||.....+                 ..++++++|+|+|+++.|..++++....   ...+.+|.++.+.   
T Consensus       148 g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~---  207 (450)
T PRK14360        148 NLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLD---  207 (450)
T ss_pred             CCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHh---
Confidence            9999999998642110                 0246899999999999887777654322   2234566676663   


Q ss_pred             cEEEEEecceE--eEcCCHHHHHHHHHhhccCC------CcccccCC-------------------CCceecCCCCCCCe
Q 018622          171 DVQAYIFRDYW--EDIGTIKSFYEANMALTKES------PAFHFYDP-------------------KTPFYTSPRFLPPT  223 (353)
Q Consensus       171 ~i~~~~~~g~w--~dIgtp~~y~~a~~~ll~~~------~~~~~~~~-------------------~~~i~~~~~i~~~~  223 (353)
                      ++.++.+.++|  ..+.+|+++..+...+....      +...++++                   ...+.+.+.+++++
T Consensus       208 ~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~  287 (450)
T PRK14360        208 PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGC  287 (450)
T ss_pred             hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCC
Confidence            35667777654  55999999988875543211      00111222                   12222333344444


Q ss_pred             EEec-eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEec-eEEECCccccchhHH-HHhhcCCCcceEeCCCeEEc
Q 018622          224 KIDN-CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR  300 (353)
Q Consensus       224 ~i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~-~v~~~~~~~~~~~~~-~~~~~~~~~~~~ig~~~~i~  300 (353)
                      .|+. +.|.++.|+++|+|+.+.+.+|+||++|.|+++|+|++ +++.++..++..+.+ .++++++   +.|++++.+.
T Consensus       288 ~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~---~~i~~~~~~~  364 (450)
T PRK14360        288 RIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEG---SKVNHLSYIG  364 (450)
T ss_pred             EECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCC---cEeccceecC
Confidence            4432 55566777777777666677888888888888888875 454445445555544 3566666   6777777777


Q ss_pred             ceEeCCCCEECCCeEEcc-------CCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          301 NCIIDKNVKIGKDVVIVN-------KDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       301 ~~iig~~~~Ig~~~~i~~-------~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +++||++|.||+++++.+       ...+++.+++|.++.|..+ +.||++++|++|++|
T Consensus       365 ~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~-~~ig~~~~v~~~~~v  423 (450)
T PRK14360        365 DATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP-ITLGEDVTVAAGSTI  423 (450)
T ss_pred             CceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC-cEECCCCEECCCCEE
Confidence            889999999999998865       2335555666666666555 346889999888875

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2.1e-27  Score=227.20  Aligned_cols=294  Identities=15%  Similarity=0.257  Sum_probs=213.6

Q ss_pred             ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHH-----CCCcEEEEEEEeCCCCCCcceEEEECC
Q 018622           18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITISCAAVGESRASDYGLVKIDN   92 (353)
Q Consensus        18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~-----~~a~~tll~~~~~~~~~~~~g~v~~d~   92 (353)
                      .+-.|+|+|..-+.-     ...++|++++||++++++|++++++|++     +++.|||++++........-.++.+|.
T Consensus       109 ~~S~GDamR~id~k~-----litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~avd~  183 (673)
T KOG1461|consen  109 SRSVGDAMRDIDEKQ-----LITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVDS  183 (673)
T ss_pred             cCcHHHHHHHHHhcc-----eeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEEEcC
Confidence            345789998765421     1248999999999999999999999965     357799999886421123344556664


Q ss_pred             -CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC-CCCchhhhhhhhhhhcC
Q 018622           93 -MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSNDFGSEIIPAAIMEH  170 (353)
Q Consensus        93 -~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~-~~~~~~~d~l~~l~~~~  170 (353)
                       +.+++.|.+-  ..+.....++.++|... ..+..++++.+++|.+|+|+++..+-+++.. ...||.+.+|..-+-..
T Consensus       184 ~T~~ll~yq~~--~~~~~~~~l~~sl~d~~-~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~  260 (673)
T KOG1461|consen  184 RTSRLLHYQKC--VREKHDIQLDLSLFDSN-DEVEVRNDLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGY  260 (673)
T ss_pred             CcceEEeehhh--cccccccccCHHHhcCC-CcEEEEccCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCC
Confidence             5788888651  11112344555555554 3456788999999999999999755443321 23467777776666678


Q ss_pred             cEEEEEecc--eEeEcCCHHHHHHHHHhhccCCCcccccCCCCceec---------CCCCCCCeEEec-eeee-ceEECC
Q 018622          171 DVQAYIFRD--YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYT---------SPRFLPPTKIDN-CRIK-DAIISH  237 (353)
Q Consensus       171 ~i~~~~~~g--~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~---------~~~i~~~~~i~~-~~i~-~~~ig~  237 (353)
                      +|+++..+.  |-..+.+++.|....+++++++...-.  |+..+..         +.+-++.+.+.. +.+. ++.||.
T Consensus       261 kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~V--pd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~  338 (673)
T KOG1461|consen  261 KIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLV--PDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGA  338 (673)
T ss_pred             eEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhccccc--ccccCCCCceeeecccccccCccceehhhccccceEEecc
Confidence            999998875  889999999999999999998732111  1111111         111133344432 4443 688999


Q ss_pred             CcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEE
Q 018622          238 GCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI  316 (353)
Q Consensus       238 ~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i  316 (353)
                      ++.|+ ++.|.||+||.+|+||.+++|.++.++.+                   |+||.||.|++|+|++++.|++++.+
T Consensus       339 gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdnc~I~~aii~d~v~i~~~~~l  399 (673)
T KOG1461|consen  339 GTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDNCRIDHAIICDDVKIGEGAIL  399 (673)
T ss_pred             cccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCCceEeeeEeecCcEeCCCccc
Confidence            99999 78999999999999999999999999999                   89999999999999999999999999


Q ss_pred             ccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          317 VNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       317 ~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      ..+            ++++.+ +++|++.+++.+++|
T Consensus       400 ~~g------------~vl~~~-VVv~~~~~l~~ns~~  423 (673)
T KOG1461|consen  400 KPG------------SVLGFG-VVVGRNFVLPKNSKV  423 (673)
T ss_pred             CCC------------cEEeee-eEeCCCccccccccc
Confidence            765            666666 455777777777553

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.4e-25  Score=203.69  Aligned_cols=261  Identities=18%  Similarity=0.274  Sum_probs=183.8

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCC---------CCCCcceE
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE---------SRASDYGL   87 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~---------~~~~~~g~   87 (353)
                      ...||+++|+...++++      +++|||++||.++++++..++++++..++.+.|++.....         ++.+.+.+
T Consensus        95 ~d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~d~  168 (433)
T KOG1462|consen   95 SDFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQARDV  168 (433)
T ss_pred             cccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCcccccccccce
Confidence            36799999999999998      3799999999999999999999999888776666653211         11123455


Q ss_pred             EEECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhh
Q 018622           88 VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI  167 (353)
Q Consensus        88 v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~  167 (353)
                      +..+++..=+.|... +.+....+.+..++|+.+|+. ...++|.++++|+|+.++++. +.+. .+..+|..+++|.++
T Consensus       169 igi~e~t~rl~y~~~-~~d~~~~l~i~~slL~~~prl-tl~t~L~dahiY~~k~~v~d~-l~~~-~sisSfk~~f~P~lv  244 (433)
T KOG1462|consen  169 IGINEDTERLAYSSD-SADEEEPLVIRKSLLWNHPRL-TLTTKLVDAHIYVFKHWVIDL-LSEK-ESISSFKADFLPYLV  244 (433)
T ss_pred             eeeccccceeEEeec-CCcCCCceehhhhhhhcCCce-EEeccccceeeeeeHHHHHHH-HhcC-Ccceeecccccchhh
Confidence            555554322334333 223344677888899999885 356899999999999999985 4432 233445556666654


Q ss_pred             hc---------------------------------CcEEEEEe--cceEeEcCCHHHHHHHHH--hhccCCCcccccCCC
Q 018622          168 ME---------------------------------HDVQAYIF--RDYWEDIGTIKSFYEANM--ALTKESPAFHFYDPK  210 (353)
Q Consensus       168 ~~---------------------------------~~i~~~~~--~g~w~dIgtp~~y~~a~~--~ll~~~~~~~~~~~~  210 (353)
                      +.                                 -++++|..  +.-+..++|.-.|+++|+  .+..-.+...     
T Consensus       245 kkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~~-----  319 (433)
T KOG1462|consen  245 KKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEAK-----  319 (433)
T ss_pred             hhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhccccc-----
Confidence            32                                 23445544  346789999999999995  3332221110     


Q ss_pred             CceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCc
Q 018622          211 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV  289 (353)
Q Consensus       211 ~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~  289 (353)
                       .+...+...  +.++    .+++|+++|.|+ ++.|..|+||++|.||++++|.+|+++++                  
T Consensus       320 -~~k~~~~~~--~l~g----~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~n------------------  374 (433)
T KOG1462|consen  320 -FVKNYVKKV--ALVG----ADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDN------------------  374 (433)
T ss_pred             -cccchhhhe--eccc----hhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecC------------------
Confidence             000000000  1111    268888999998 78888999999999999999999999998                  


Q ss_pred             ceEeCCCeEEcceEeCCCCEECCCeEEcc
Q 018622          290 PIGVGRNTKIRNCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       290 ~~~ig~~~~i~~~iig~~~~Ig~~~~i~~  318 (353)
                       ++||+|+.|.+||||+++.||+++.+.|
T Consensus       375 -V~vg~G~~IensIIg~gA~Ig~gs~L~n  402 (433)
T KOG1462|consen  375 -VVVGDGVNIENSIIGMGAQIGSGSKLKN  402 (433)
T ss_pred             -cEecCCcceecceecccceecCCCeeee
Confidence             8899999999999999999999999887

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=99.92  E-value=2.9e-24  Score=195.33  Aligned_cols=157  Identities=20%  Similarity=0.288  Sum_probs=131.5

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEEC-CCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID-NMG   94 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d-~~g   94 (353)
                      ..++|||+|+++++++++.   ..+++|+|++||++++.|+++++++|+++++++|+++.+++.+.+.+||++.+| +++
T Consensus        82 ~~~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g  158 (257)
T cd06428          82 YKPLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTG  158 (257)
T ss_pred             CccCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCC
Confidence            4578999999999999962   234789999999999999999999999999999999988754446789999998 678


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC------------------CCC
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP------------------TSN  156 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~------------------~~~  156 (353)
                      +|..|.|||..+.                     +.++++|+|+|++++|+.+ .+..+                  ...
T Consensus       159 ~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~e~~~~~~~~~~~~~~~~  216 (257)
T cd06428         159 EVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQEAQLGDDNNREGRAEVI  216 (257)
T ss_pred             eEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhcccccccccccccccccccccee
Confidence            9999999987432                     4689999999999999754 33221                  113


Q ss_pred             chhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhh
Q 018622          157 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       157 ~~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~l  197 (353)
                      ++.+|+++.+++++++.+|.++|+|.|||||++|++||+.+
T Consensus       217 ~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~  257 (257)
T cd06428         217 RLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY  257 (257)
T ss_pred             eehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence            45579999999999999999999999999999999999753

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.92  E-value=1.6e-24  Score=190.01  Aligned_cols=156  Identities=23%  Similarity=0.385  Sum_probs=136.6

Q ss_pred             CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      |+.++|-|+|+..+++|+.+      ++|+|+.||+++..+++++++.+.++++++++++.++.+  |++||++.+|+++
T Consensus        80 Q~~p~GlA~Av~~a~~fv~~------~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d--P~rfGV~e~d~~~  151 (286)
T COG1209          80 QPEPDGLAHAVLIAEDFVGD------DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD--PSRYGVVEFDEDG  151 (286)
T ss_pred             cCCCCcHHHHHHHHHhhcCC------CceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC--cccceEEEEcCCC
Confidence            57889999999999999984      899999999998779999999999999999999999998  8999999999999


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCC-Cch-hhhhhhhhhhcCcE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS-NDF-GSEIIPAAIMEHDV  172 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~-~~~-~~d~l~~l~~~~~i  172 (353)
                      ++++++|||..|.                     |+|+-+|+|+|++++|+ +++...|+. .++ ++|++..++++++.
T Consensus       152 ~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElEITd~i~~~i~~G~~  209 (286)
T COG1209         152 KVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGELEITDAIDLYIEKGYL  209 (286)
T ss_pred             cEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCceEehHHHHHHHHcCcE
Confidence            9999999999875                     68999999999999997 566665542 232 57899999988655


Q ss_pred             E-EEEecceEeEcCCHHHHHHHHHhhccC
Q 018622          173 Q-AYIFRDYWEDIGTIKSFYEANMALTKE  200 (353)
Q Consensus       173 ~-~~~~~g~w~dIgtp~~y~~a~~~ll~~  200 (353)
                      . .....|+|.|.||+++|++|++.++..
T Consensus       210 ~~~~~~~G~WlDtGt~~slleA~~~i~~~  238 (286)
T COG1209         210 VVAILIRGWWLDTGTPESLLEANNFVRTV  238 (286)
T ss_pred             EEEEEccceEEecCChhhHHHHHHHHHHH
Confidence            4 556788999999999999999888763

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=99.90  E-value=8e-23  Score=183.20  Aligned_cols=152  Identities=26%  Similarity=0.379  Sum_probs=130.0

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECC-CC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-MG   94 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~-~g   94 (353)
                      ...+||+++|++++.++++    .+++|+|++||++++.++++++++|+++++++|+++.+.++  +++||++.+|+ ++
T Consensus        81 ~~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~~~  154 (233)
T cd06425          81 TEPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED--PSKYGVVVHDENTG  154 (233)
T ss_pred             CCCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC--ccccCeEEEcCCCC
Confidence            4568999999999999962    23679999999999999999999999999999999988765  57899999987 78


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQA  174 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~  174 (353)
                      +|+++.|||..+.                     ++++++|+|+|++++|+.+.+    ...++..++++.+++++++.+
T Consensus       155 ~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l~~----~~~~~~~~~~~~l~~~~~v~~  209 (233)
T cd06425         155 RIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRIPL----RPTSIEKEIFPKMASEGQLYA  209 (233)
T ss_pred             EEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhccc----CcccchhhhHHHHHhcCCEEE
Confidence            9999999987542                     368999999999999975432    223445688999999999999


Q ss_pred             EEecceEeEcCCHHHHHHHHHhhc
Q 018622          175 YIFRDYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       175 ~~~~g~w~dIgtp~~y~~a~~~ll  198 (353)
                      |+++|+|.|||||++|++|++.+|
T Consensus       210 ~~~~g~w~digt~~~~~~a~~~~l  233 (233)
T cd06425         210 YELPGFWMDIGQPKDFLKGMSLYL  233 (233)
T ss_pred             EeeCCEEEcCCCHHHHHHHHHHhC
Confidence            999999999999999999998764

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=99.90  E-value=1.1e-22  Score=187.67  Aligned_cols=158  Identities=16%  Similarity=0.222  Sum_probs=125.6

Q ss_pred             CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe--------cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcc
Q 018622           14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------MDYMDFIQSHVDRDADITISCAAVGESRASDY   85 (353)
Q Consensus        14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~--------~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~   85 (353)
                      .|++++||||||++|++++++      ++|+|++||++++        +++++++++|.++++.++++ ..++. .+++|
T Consensus       103 ~q~~~lGtg~Av~~a~~~l~~------~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~-~~~~~-~~~~y  174 (297)
T TIGR01105       103 RQAQPLGLGHSILCARPVVGD------NPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLA-KRMPG-DLSEY  174 (297)
T ss_pred             eCCCcCchHHHHHHHHHHhCC------CCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcEEEE-EEcCC-CCccc
Confidence            457899999999999999962      6899999999997        68999999998888766444 44332 27899


Q ss_pred             eEEEE----CCCCC---eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--CC
Q 018622           86 GLVKI----DNMGR---IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN  156 (353)
Q Consensus        86 g~v~~----d~~g~---V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~~  156 (353)
                      |++.+    |++|+   |.+|.|||..+..                  ..++++++|+|+|++++|+. ++...+.  ..
T Consensus       175 Gvv~~~~~~d~~g~v~~I~~~~EKP~~~~~------------------~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge  235 (297)
T TIGR01105       175 SVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLMAVGRYVLSADIWAE-LERTEPGAWGR  235 (297)
T ss_pred             eEEEecccccCCCCeeeEeEEEECCCCccc------------------CCcCEEEEEEEEECHHHHHH-HhcCCCCCCCe
Confidence            99998    44564   5899999965421                  02579999999999999974 5543322  11


Q ss_pred             chhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhc
Q 018622          157 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       157 ~~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll  198 (353)
                      ..++|+++.+++++++++|.++|+|+|+|+|++|++|+.++.
T Consensus       236 ~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~  277 (297)
T TIGR01105       236 IQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG  277 (297)
T ss_pred             eeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence            235689999999999999999999999999999999988764

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=99.90  E-value=7.6e-23  Score=184.82  Aligned_cols=160  Identities=33%  Similarity=0.555  Sum_probs=129.3

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCc--EEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDAD--ITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~--~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      +..+|||+||+++++++...  ..+++|+|++||++++.++.+++++|++++++  +++...+.++  +++||++.+|++
T Consensus        81 ~~~~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~  156 (248)
T PF00483_consen   81 PEPLGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVED--PSRYGVVEVDED  156 (248)
T ss_dssp             SSSSCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSG--GGGSEEEEEETT
T ss_pred             ccccchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhccccccccccccccccc--cccceeeeeccc
Confidence            45679999999999999841  01235999999999999999999999999884  4555555443  789999999998


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHH--hhCCCCCchhhhhhhhhhhcC-
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDFGSEIIPAAIMEH-  170 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~--~~~~~~~~~~~d~l~~l~~~~-  170 (353)
                      |+|.+|.|||..+..                    +.++++|+|+|++++|+.+++  +......+++.|+++.+++++ 
T Consensus       157 ~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~  216 (248)
T PF00483_consen  157 GRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGK  216 (248)
T ss_dssp             SEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTC
T ss_pred             eeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCC
Confidence            999999999986531                    468999999999999987654  122234567789999999886 


Q ss_pred             cEEEEEecc--eEeEcCCHHHHHHHHHhhcc
Q 018622          171 DVQAYIFRD--YWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       171 ~i~~~~~~g--~w~dIgtp~~y~~a~~~ll~  199 (353)
                      .+.++.+++  +|.|||+|++|++|++++++
T Consensus       217 ~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~  247 (248)
T PF00483_consen  217 KVYAFIFEGNAYWIDIGTPEDYLEANMDLLN  247 (248)
T ss_dssp             EEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred             ceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence            555889998  79999999999999999875

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=99.89  E-value=4.5e-22  Score=180.50  Aligned_cols=150  Identities=16%  Similarity=0.271  Sum_probs=128.2

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      ..++|||+||++++++++      +++|+|++||+++++|+++++++|.++++++|+++.+  +  +.+||++.+|+ ++
T Consensus       100 ~~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~--~--~~~yG~v~~d~-~~  168 (254)
T TIGR02623       100 GESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ--P--PGRFGALDLEG-EQ  168 (254)
T ss_pred             CCcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec--C--CCcccEEEECC-Ce
Confidence            356899999999999986      3789999999999999999999999999999987653  2  56799999985 69


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY  175 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~  175 (353)
                      |++|.|||..+                      +.++++|+|+|++++|+ .+++.   ..++.+|+++.+++++++.+|
T Consensus       169 V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~-~l~~~---~~~~~~d~i~~l~~~~~v~~~  222 (254)
T TIGR02623       169 VTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD-LIDGD---ATVWEQEPLETLAQRGELSAY  222 (254)
T ss_pred             EEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-hcccc---CchhhhhHHHHHHhCCCEEEE
Confidence            99999998532                      35899999999999995 55432   235678999999999999999


Q ss_pred             EecceEeEcCCHHHHHHHHHhhccCCC
Q 018622          176 IFRDYWEDIGTIKSFYEANMALTKESP  202 (353)
Q Consensus       176 ~~~g~w~dIgtp~~y~~a~~~ll~~~~  202 (353)
                      .++|+|.|||||++|.+++..+...+.
T Consensus       223 ~~~g~w~dIgt~~~~~~~~~~~~~~~~  249 (254)
T TIGR02623       223 EHSGFWQPMDTLRDKNYLEELWESGRA  249 (254)
T ss_pred             eCCCEEecCCchHHHHHHHHHHHcCCC
Confidence            999999999999999999988887653

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>PRK10122 GalU regulator GalF; Provisional

Probab=99.89  E-value=4.6e-22  Score=183.91  Aligned_cols=157  Identities=16%  Similarity=0.200  Sum_probs=126.0

Q ss_pred             CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe--------cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcc
Q 018622           14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------MDYMDFIQSHVDRDADITISCAAVGESRASDY   85 (353)
Q Consensus        14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~--------~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~   85 (353)
                      .|+.++||||||++|++++.      +++|+|++||++++        +|+++++++|.+++++++++....+  .+++|
T Consensus       103 ~q~~~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~--~~~~y  174 (297)
T PRK10122        103 RQGQPLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPG--DLSEY  174 (297)
T ss_pred             ecCCcCchHHHHHHHHHHcC------CCCEEEEECCeeccCccccccchhHHHHHHHHHHhCCcEEEEEECCC--CCCCc
Confidence            44668999999999999996      26899999999986        5899999999988887554443333  37899


Q ss_pred             eEEEEC----CCC---CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--CC
Q 018622           86 GLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN  156 (353)
Q Consensus        86 g~v~~d----~~g---~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~~  156 (353)
                      |++.+|    ++|   +|..|.|||..+..                  ..++++++|+|+|++++|..+ .+..+.  ..
T Consensus       175 Gvv~~d~~~~~~g~v~~I~~~~EKp~~~~~------------------~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~~e  235 (297)
T PRK10122        175 SVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLMAVGRYVLSADIWPEL-ERTEPGAWGR  235 (297)
T ss_pred             eEEEecCcccCCCCeeeEEEEEECCCCccc------------------CCccEEEEEEEEECHHHHHHH-HhCCCCCCCe
Confidence            999996    356   78999999964421                  025789999999999999865 433222  22


Q ss_pred             chhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhh
Q 018622          157 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       157 ~~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~l  197 (353)
                      ..++|+++.+++++++.+|.++|+|+|+|+|++|++|+.++
T Consensus       236 ~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~  276 (297)
T PRK10122        236 IQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             eeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999998

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=99.89  E-value=4.3e-22  Score=184.46  Aligned_cols=155  Identities=21%  Similarity=0.246  Sum_probs=127.2

Q ss_pred             CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe--------cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcce
Q 018622           15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------MDYMDFIQSHVDRDADITISCAAVGESRASDYG   86 (353)
Q Consensus        15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~--------~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g   86 (353)
                      |..++|||+|+++|++++.      +++|+|++||++++        .|+.+++++|.+++++ |+++.+++.  +..||
T Consensus       109 q~~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~~--~~~yG  179 (302)
T PRK13389        109 QGLAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVAD--VTAYG  179 (302)
T ss_pred             cCCCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC-EEEEEEccc--CCcce
Confidence            4667999999999999986      37899999999975        7999999999888876 777777755  67899


Q ss_pred             EEEECC-------CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--CCc
Q 018622           87 LVKIDN-------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SND  157 (353)
Q Consensus        87 ~v~~d~-------~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~~~  157 (353)
                      ++..|+       +++|..|.|||.....                   .++++++|+|+|++++|+ .+++..+.  ...
T Consensus       180 vv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s~~~~~GiYi~~~~il~-~l~~~~~~~~~e~  239 (302)
T PRK13389        180 VVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEI  239 (302)
T ss_pred             EEEecCcccccCCcceEEEEEECCCCCCC-------------------CccEEEEEEEEECHHHHH-HHHhCCCCCCCee
Confidence            998863       3579999999974321                   146899999999999996 56543322  223


Q ss_pred             hhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhc
Q 018622          158 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       158 ~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll  198 (353)
                      +.+|+++.+++++++.+|.++|+|+|||+|++|++|+.++-
T Consensus       240 ~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~  280 (302)
T PRK13389        240 QLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG  280 (302)
T ss_pred             eHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999998874

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=99.87  E-value=3e-21  Score=177.44  Aligned_cols=153  Identities=24%  Similarity=0.383  Sum_probs=126.5

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE-EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i-~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      +.++|||+|++++++++++      ++|+|++||++ ++.++.+++++|.++++++|+++.++++  +++||++.+|++|
T Consensus        80 ~~~~Gta~al~~a~~~l~~------~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~--p~~yGvv~~d~~g  151 (286)
T TIGR01207        80 PSPDGLAQAFIIGEDFIGG------DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD--PERYGVVEFDSNG  151 (286)
T ss_pred             cCCCCHHHHHHHHHHHhCC------CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC--HHHCceEEECCCC
Confidence            4678999999999999973      67999999975 5889999999999888899999988876  6789999999889


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-CCc-hhhhhhhhhhhcCcE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SND-FGSEIIPAAIMEHDV  172 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~~~-~~~d~l~~l~~~~~i  172 (353)
                      +|++|.|||..+.                     ++++++|+|+|++++++ ++++..++ ..+ ..+|+++.+++++++
T Consensus       152 ~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~eitdv~~~~l~~g~l  209 (286)
T TIGR01207       152 RAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGELEITDLNRVYLEEGRL  209 (286)
T ss_pred             eEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcEeHHHHHHHHHHcCCc
Confidence            9999999997542                     46899999999999986 45543332 122 346899999998877


Q ss_pred             EEEEe-cce-EeEcCCHHHHHHHHHhhc
Q 018622          173 QAYIF-RDY-WEDIGTIKSFYEANMALT  198 (353)
Q Consensus       173 ~~~~~-~g~-w~dIgtp~~y~~a~~~ll  198 (353)
                      .++.+ +|+ |+|+|||++|++|+..+.
T Consensus       210 ~v~~~~~g~~W~DiGt~~~l~~A~~~~~  237 (286)
T TIGR01207       210 SVELLGRGYAWLDTGTHDSLLEASNFIQ  237 (286)
T ss_pred             EEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence            76666 675 999999999999987664

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=99.87  E-value=5.7e-21  Score=171.93  Aligned_cols=153  Identities=20%  Similarity=0.284  Sum_probs=126.0

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      +..+||++||++++++++      +++|+|++||+++ +.++.+++++|.++++++|+++.+.++  +++||++.+|++|
T Consensus        81 ~~~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~g  152 (240)
T cd02538          81 PKPGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--PERYGVVEFDENG  152 (240)
T ss_pred             CCCCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCc--hhcCceEEecCCC
Confidence            456899999999999986      2689999999754 678999999999889999999988765  5789999999889


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-CC-chhhhhhhhhhhcCcE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SN-DFGSEIIPAAIMEHDV  172 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~~-~~~~d~l~~l~~~~~i  172 (353)
                      +|+.|.|||..+.                     +.++++|+|+|++++|+ .+++..+. .. ....++++.+++++++
T Consensus       153 ~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~~~~l~~~g~~  210 (240)
T cd02538         153 RVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGELEITDVNNEYLEKGKL  210 (240)
T ss_pred             cEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCeEEhHHHHHHHHHhCCe
Confidence            9999999986542                     35889999999999996 55543221 11 2346899999988888


Q ss_pred             EEEEec--ceEeEcCCHHHHHHHHHhhc
Q 018622          173 QAYIFR--DYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       173 ~~~~~~--g~w~dIgtp~~y~~a~~~ll  198 (353)
                      .++.++  |+|.|||||++|++|++.+.
T Consensus       211 ~~~~~~~~g~w~digt~~~~~~a~~~~~  238 (240)
T cd02538         211 SVELLGRGFAWLDTGTHESLLEASNFVQ  238 (240)
T ss_pred             EEEEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence            888877  99999999999999998653

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=99.86  E-value=8.5e-21  Score=174.74  Aligned_cols=152  Identities=22%  Similarity=0.341  Sum_probs=125.8

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE-EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i-~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      +.++|||+|++.+++++.+      ++|++++||.+ ++.|+++++++|.++++++|+++.++++  +++||++.+|++|
T Consensus        84 ~~~~Gta~Al~~a~~~i~~------~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~--p~~yGvv~~d~~g  155 (292)
T PRK15480         84 PSPDGLAQAFIIGEEFIGG------DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDQNG  155 (292)
T ss_pred             CCCCCHHHHHHHHHHHhCC------CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCC--cccCcEEEECCCC
Confidence            5578999999999999962      56999999976 4899999999999888899999888766  7899999999889


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcCc
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEHD  171 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~~  171 (353)
                      +|++|.|||..+.                     ++++++|+|+|++++++. +++..+.   ..+ .+|+++.++++++
T Consensus       156 ~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~-~~~~~~~~~ge~~-itd~~~~~l~~g~  212 (292)
T PRK15480        156 TAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEM-AKNLKPSARGELE-ITDINRIYMEQGR  212 (292)
T ss_pred             cEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHHH-HhhcCCCCCCeeE-hHHHHHHHHhcCC
Confidence            9999999997543                     578999999999999974 4443332   223 4689999998887


Q ss_pred             EEE-EEecc-eEeEcCCHHHHHHHHHhhc
Q 018622          172 VQA-YIFRD-YWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       172 i~~-~~~~g-~w~dIgtp~~y~~a~~~ll  198 (353)
                      +.. +..+| +|+|+|||++|.+|+..+.
T Consensus       213 ~~~~~~~~g~~W~DiGt~~~l~~a~~~~~  241 (292)
T PRK15480        213 LSVAMMGRGYAWLDTGTHQSLIEASNFIA  241 (292)
T ss_pred             eEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence            754 46678 5999999999999998765

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=99.86  E-value=1.1e-20  Score=172.83  Aligned_cols=158  Identities=23%  Similarity=0.267  Sum_probs=125.1

Q ss_pred             CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEec---CHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEEC
Q 018622           15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID   91 (353)
Q Consensus        15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~---dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d   91 (353)
                      +++++|||+||+++++++++      ++|+|++||.++..   +++++++.|++++++ ++++.+.+.+.+.+||++.+|
T Consensus       100 ~~~~~Gt~~al~~~~~~i~~------~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~v~~d  172 (267)
T cd02541         100 QKEPLGLGHAVLCAKPFIGD------EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIAVEEVPPEDVSKYGIVKGE  172 (267)
T ss_pred             cCCCCChHHHHHHHHHHhCC------CceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEEEEEcChhcCccceEEEee
Confidence            36679999999999999962      78999999998865   499999999887775 466666554446789999998


Q ss_pred             C----CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC-CCCchhhhhhhhh
Q 018622           92 N----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSNDFGSEIIPAA  166 (353)
Q Consensus        92 ~----~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~-~~~~~~~d~l~~l  166 (353)
                      +    +++|..|.|||.....                   .+.++++|+|+|++++|..+.+.... ....+..++++.+
T Consensus       173 ~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l  233 (267)
T cd02541         173 KIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKL  233 (267)
T ss_pred             cCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHH
Confidence            5    2489999999863211                   14688999999999999755331111 1223456899999


Q ss_pred             hhcCcEEEEEecceEeEcCCHHHHHHHHHhhc
Q 018622          167 IMEHDVQAYIFRDYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       167 ~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll  198 (353)
                      ++++++.+|.++|+|.|||||++|++|++++.
T Consensus       234 ~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~  265 (267)
T cd02541         234 LEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA  265 (267)
T ss_pred             HhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence            98899999999999999999999999999875

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=99.85  E-value=6.2e-20  Score=166.51  Aligned_cols=149  Identities=17%  Similarity=0.285  Sum_probs=126.7

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCe
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI   96 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V   96 (353)
                      ..+||++|+++|++++.+     +++|+|++||++++.|+.++++.|.++++++|+++..  +  ..+||++.+|++|+|
T Consensus       100 ~~~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--~--~~~~g~v~~d~~g~V  170 (253)
T cd02524         100 LNTMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--P--PGRFGELDLDDDGQV  170 (253)
T ss_pred             cccccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--C--CCcccEEEECCCCCE
Confidence            357899999999999862     2689999999999999999999999999999987763  2  567999999988999


Q ss_pred             eEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEEE
Q 018622           97 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYI  176 (353)
Q Consensus        97 ~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~~  176 (353)
                      ..+.|||..+                      +.++++|+|+|++++|+. +++.   ..++.+++++.+++++++.+|.
T Consensus       171 ~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~-l~~~---~~~~~~d~l~~li~~~~v~~~~  224 (253)
T cd02524         171 TSFTEKPQGD----------------------GGWINGGFFVLEPEVFDY-IDGD---DTVFEREPLERLAKDGELMAYK  224 (253)
T ss_pred             EEEEECCCCC----------------------CceEEEEEEEECHHHHHh-hccc---cchhhHHHHHHHHhcCCEEEEe
Confidence            9999998643                      247899999999999874 4332   3455678999999999999999


Q ss_pred             ecceEeEcCCHHHHHHHHHhhccC
Q 018622          177 FRDYWEDIGTIKSFYEANMALTKE  200 (353)
Q Consensus       177 ~~g~w~dIgtp~~y~~a~~~ll~~  200 (353)
                      ++|+|.||+|+++|.+|+..+...
T Consensus       225 ~~g~w~~I~t~~~~~~~~~~~~~~  248 (253)
T cd02524         225 HTGFWQCMDTLRDKQTLEELWNSG  248 (253)
T ss_pred             cCCEEEeCcCHHHHHHHHHHHHcC
Confidence            999999999999999999777554

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=99.84  E-value=3.4e-20  Score=168.85  Aligned_cols=154  Identities=20%  Similarity=0.223  Sum_probs=121.5

Q ss_pred             CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEec---CHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEE
Q 018622           14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI   90 (353)
Q Consensus        14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~---dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~   90 (353)
                      .+++++||++||+++++++.      +++|+|++||+++..   ++++++++|+++++++ +++...+.+.+.+||++.+
T Consensus        99 ~~~~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~  171 (260)
T TIGR01099        99 RQKEQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDG  171 (260)
T ss_pred             ecCCCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEEECChhhcccCceEEe
Confidence            34678999999999999985      378999999999864   6999999999988876 5555555444678999998


Q ss_pred             CC----CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-CCchhhhhhhh
Q 018622           91 DN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SNDFGSEIIPA  165 (353)
Q Consensus        91 d~----~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~~~~~~d~l~~  165 (353)
                      |+    +++|+.|.|||.....                   .++++++|+|+|++++|..+.+..... ......|+++.
T Consensus       172 d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~  232 (260)
T TIGR01099       172 EGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRK  232 (260)
T ss_pred             ccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHH
Confidence            62    3699999999953211                   146899999999999998654322111 12335689999


Q ss_pred             hhhcCcEEEEEecceEeEcCCHHHHHHH
Q 018622          166 AIMEHDVQAYIFRDYWEDIGTIKSFYEA  193 (353)
Q Consensus       166 l~~~~~i~~~~~~g~w~dIgtp~~y~~a  193 (353)
                      +++++++++|.++|+|.|||||++|++|
T Consensus       233 l~~~~~v~~~~~~g~w~digs~~~y~~a  260 (260)
T TIGR01099       233 LLEKETVYAYKFKGKRYDCGSKLGYLKA  260 (260)
T ss_pred             HHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence            9998999999999999999999999874

Built to distinquish between the highly similar genes galU and galF

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=99.81  E-value=1.1e-18  Score=156.51  Aligned_cols=153  Identities=26%  Similarity=0.367  Sum_probs=126.0

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      ++.+||+++++.++.+++      +++|++++||++++.++.++++.|.++++++++++.+.++  +.+||++.+|+ ++
T Consensus        80 ~~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~-~~  150 (236)
T cd04189          80 EEPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED--PRRFGVAVVDD-GR  150 (236)
T ss_pred             CCCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC--cccceEEEEcC-Ce
Confidence            456799999999999886      2689999999999999999999999999999999888765  57799988875 59


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--CCchhhhhhhhhhhc-CcE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIME-HDV  172 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~~~~~~d~l~~l~~~-~~i  172 (353)
                      |..+.|||..+.                     +.++++|+|+|++++|+.+ +...+.  ......++++.++++ .++
T Consensus       151 v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~d~~~~~i~~g~~v  208 (236)
T cd04189         151 IVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELEITDAIQWLIDRGRRV  208 (236)
T ss_pred             EEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEEHHHHHHHHHHcCCcE
Confidence            999999986432                     3578999999999999754 432221  112246889988876 469


Q ss_pred             EEEEecceEeEcCCHHHHHHHHHhhcc
Q 018622          173 QAYIFRDYWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       173 ~~~~~~g~w~dIgtp~~y~~a~~~ll~  199 (353)
                      .+|.++++|.|||||++|.+|++.+++
T Consensus       209 ~~~~~~~~~~~i~t~~dl~~a~~~~l~  235 (236)
T cd04189         209 GYSIVTGWWKDTGTPEDLLEANRLLLD  235 (236)
T ss_pred             EEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999875

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=99.81  E-value=3.2e-19  Score=158.49  Aligned_cols=140  Identities=14%  Similarity=0.178  Sum_probs=117.8

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHH--HCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV--DRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~--~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      +.+||+++|+.++.++++      ++|+|++||++++.|+.++++.|+  +.++.+++...+.+.  ...||++.+|+++
T Consensus        80 ~~~g~~~~l~~~~~~~~~------~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~~  151 (221)
T cd06422          80 ELLETGGGIKKALPLLGD------EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPG--HNGVGDFSLDADG  151 (221)
T ss_pred             cccccHHHHHHHHHhcCC------CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCC--CCCcceEEECCCC
Confidence            567999999999999862      789999999999999999999998  466777777666554  6789999999889


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQA  174 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~  174 (353)
                      +|..+.|||..                        +++++|+|+|++++|..+.+.     ....+++++.+++++++.+
T Consensus       152 ~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~~d~~~~l~~~~~~~~  202 (221)
T cd06422         152 RLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSLNPLWDRAIAAGRLFG  202 (221)
T ss_pred             cEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccHHHHHHHHHHcCCeEE
Confidence            99999888742                        478999999999999764321     2235689999999999999


Q ss_pred             EEecceEeEcCCHHHHHHH
Q 018622          175 YIFRDYWEDIGTIKSFYEA  193 (353)
Q Consensus       175 ~~~~g~w~dIgtp~~y~~a  193 (353)
                      |.++|+|.|||||++|.+|
T Consensus       203 ~~~~g~w~di~t~~~~~~a  221 (221)
T cd06422         203 LVYDGLWFDVGTPERLLAA  221 (221)
T ss_pred             EecCCEEEcCCCHHHHhhC
Confidence            9999999999999999875

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=99.80  E-value=1.5e-18  Score=153.93  Aligned_cols=145  Identities=26%  Similarity=0.429  Sum_probs=123.0

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      ...+||+++|+.+++++.      +++|++++||++++.++.++++.|++.++++++++.+.+.  ...|+.+.+|++++
T Consensus        78 ~~~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~v~~d~~~~  149 (223)
T cd06915          78 PEPLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGR  149 (223)
T ss_pred             CCCCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--CCcceeEEECCCCe
Confidence            346899999999999884      3789999999999999999999999888889998888654  56799999988899


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY  175 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~  175 (353)
                      |..+.|||....                     +.++++|+|+|++++|..+.+.    ..++.+++++.+++++++.+|
T Consensus       150 v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~~~~l~~~~~v~~~  204 (223)
T cd06915         150 VIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEADVLPALVKRGRLYGF  204 (223)
T ss_pred             EEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHHHHHHHHhcCcEEEE
Confidence            999999876431                     4688999999999999754221    234567899999988899999


Q ss_pred             EecceEeEcCCHHHHHHH
Q 018622          176 IFRDYWEDIGTIKSFYEA  193 (353)
Q Consensus       176 ~~~g~w~dIgtp~~y~~a  193 (353)
                      +++++|.||+||++|.+|
T Consensus       205 ~~~~~~~dI~t~~dl~~a  222 (223)
T cd06915         205 EVDGYFIDIGIPEDYARA  222 (223)
T ss_pred             ecCCeEEecCCHHHHHhh
Confidence            999999999999999987

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.79  E-value=1.6e-18  Score=152.37  Aligned_cols=164  Identities=20%  Similarity=0.238  Sum_probs=137.8

Q ss_pred             CCCCCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEec---CHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceE
Q 018622           11 GESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHVDRDADITISCAAVGESRASDYGL   87 (353)
Q Consensus        11 ~~~~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~---dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~   87 (353)
                      .-.+|..++|.|||+++|++++.+      |+|.|+.||.++..   .+.+|++.+.+.+. .++.+.+++++..++||+
T Consensus       100 ~~vRQ~e~~GLGhAVl~A~~~vg~------EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~-svi~v~ev~~e~v~kYGv  172 (291)
T COG1210         100 SFVRQKEPLGLGHAVLCAKPFVGD------EPFAVLLPDDLVDSEKPCLKQMIELYEETGG-SVIGVEEVPPEDVSKYGV  172 (291)
T ss_pred             EEEecCCCCcchhHHHhhhhhcCC------CceEEEeCCeeecCCchHHHHHHHHHHHhCC-cEEEEEECCHHHCcccce
Confidence            345778999999999999999984      89999999999875   47899999988887 467778888777899999


Q ss_pred             EE----ECCC-CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCC--Cchhh
Q 018622           88 VK----IDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--NDFGS  160 (353)
Q Consensus        88 v~----~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~--~~~~~  160 (353)
                      +.    .+.+ .+|..+.|||...++                   .|+++-.|-|+|+|++|+ +|++..+..  .-.++
T Consensus       173 i~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GRYil~p~IFd-~L~~~~~G~ggEiQLT  232 (291)
T COG1210         173 IDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGRYVLTPEIFD-ILEETKPGAGGEIQLT  232 (291)
T ss_pred             EecCccccCCeEEEEEEEECCCCCCC-------------------CcceeeeeeeecCHHHHH-HHhhCCCCCCCEeeHH
Confidence            98    4333 489999999976543                   479999999999999997 677765532  22368


Q ss_pred             hhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhccCC
Q 018622          161 EIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES  201 (353)
Q Consensus       161 d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~  201 (353)
                      |.+..++++..+++|.++|..+|+|++..|.+|+.++..++
T Consensus       233 Dai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~  273 (291)
T COG1210         233 DAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR  273 (291)
T ss_pred             HHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999887654

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=99.79  E-value=3.4e-18  Score=151.07  Aligned_cols=140  Identities=32%  Similarity=0.536  Sum_probs=119.4

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      +.++||+++|+.+++++.      +++|+|++||++++.|+.++++.|+++++++|+++.+.+.  +.+|+++.+|++++
T Consensus        78 ~~~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~d~~~~  149 (217)
T cd04181          78 EEPLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED--PSRYGVVELDDDGR  149 (217)
T ss_pred             CCCCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCC--CCcceEEEEcCCCc
Confidence            345799999999999883      3899999999999999999999999999999999988764  67899999998899


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY  175 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~  175 (353)
                      |..+.|||..+.                     ..++++|+|+|++++|+ .++.......++..++++.++++.++.+|
T Consensus       150 v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~l~~~~~v~~~  207 (217)
T cd04181         150 VTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDAIPLLIEEGKVYGY  207 (217)
T ss_pred             EEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHHHHHHHhcCCEEEE
Confidence            999999987542                     36899999999999996 45543222346678999999988999999


Q ss_pred             EecceEeEcC
Q 018622          176 IFRDYWEDIG  185 (353)
Q Consensus       176 ~~~g~w~dIg  185 (353)
                      +++|+|.|+|
T Consensus       208 ~~~g~w~dig  217 (217)
T cd04181         208 PVDGYWLDIG  217 (217)
T ss_pred             EcCCEEecCC
Confidence            9999999987

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=99.77  E-value=1.3e-17  Score=147.88  Aligned_cols=142  Identities=26%  Similarity=0.437  Sum_probs=116.4

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      +.++||+++++.+.+...       ++|+|++||.+++.++.++++.|+++++++++++.+...  ...||++..|+ ++
T Consensus        78 ~~~~g~~~~l~~~~~~~~-------~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~-~~  147 (220)
T cd06426          78 DKPLGTAGALSLLPEKPT-------DPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--QVPYGVVETEG-GR  147 (220)
T ss_pred             CCCCcchHHHHHHHhhCC-------CCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--CCcceEEEECC-CE
Confidence            456899999987776543       789999999999999999999999999999998877543  46699999986 89


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc-CcEEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQA  174 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~-~~i~~  174 (353)
                      |..+.|||..                       +.++++|+|+|++++++.+ ++   .......++++.++++ .++.+
T Consensus       148 v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~~~~~~i~~~~~i~~  200 (220)
T cd06426         148 ITSIEEKPTH-----------------------SFLVNAGIYVLEPEVLDLI-PK---NEFFDMPDLIEKLIKEGKKVGV  200 (220)
T ss_pred             EEEEEECCCC-----------------------CCeEEEEEEEEcHHHHhhc-CC---CCCcCHHHHHHHHHHCCCcEEE
Confidence            9999999753                       2578999999999998743 32   1222246788888877 46999


Q ss_pred             EEecceEeEcCCHHHHHHHH
Q 018622          175 YIFRDYWEDIGTIKSFYEAN  194 (353)
Q Consensus       175 ~~~~g~w~dIgtp~~y~~a~  194 (353)
                      |+++++|+|+|||++|++||
T Consensus       201 ~~~~~~w~~igt~~dl~~a~  220 (220)
T cd06426         201 FPIHEYWLDIGRPEDYEKAN  220 (220)
T ss_pred             EEeCCeEEeCCCHHHHHhhC
Confidence            99999999999999999875

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.70  E-value=4.8e-17  Score=144.57  Aligned_cols=134  Identities=25%  Similarity=0.352  Sum_probs=76.3

Q ss_pred             chhhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhccCCCcc----cccCCCC-ceecCCCCCCCeEEeceeee
Q 018622          157 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAF----HFYDPKT-PFYTSPRFLPPTKIDNCRIK  231 (353)
Q Consensus       157 ~~~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~~~----~~~~~~~-~i~~~~~i~~~~~i~~~~i~  231 (353)
                      +| .|.++.+++.+   ++.++|||.|+   ++|++++++++......    ....+.. .+..++.+.+++.+.+    
T Consensus        29 ~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g----   97 (231)
T TIGR03532        29 DF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD----   97 (231)
T ss_pred             cc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC----
Confidence            44 57888888766   89999999999   99999999999764210    0000110 1122223333333322    


Q ss_pred             ceEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcc--------
Q 018622          232 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN--------  301 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~--------  301 (353)
                      ++.||++|.|+ ++.| .+++||++|.|++++.|.+.++++++                  |.|++++.|.+        
T Consensus        98 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~------------------~~Ig~~~~I~~~~~~~~~~  159 (231)
T TIGR03532        98 QVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKN------------------VHIGAGAVLAGVIEPPSAK  159 (231)
T ss_pred             CeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCC------------------cEEcCCcEEccccccccCC
Confidence            34444444444 2322 24666666666666666543334333                  66666666653        


Q ss_pred             -eEeCCCCEECCCeEEccC
Q 018622          302 -CIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       302 -~iig~~~~Ig~~~~i~~~  319 (353)
                       ++||+++.||+++++..+
T Consensus       160 ~v~IGd~v~IG~gsvI~~g  178 (231)
T TIGR03532       160 PVVIEDNVLIGANAVILEG  178 (231)
T ss_pred             CeEECCCcEECCCCEEcCC
Confidence             566666666666666543

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=99.69  E-value=7.6e-16  Score=137.67  Aligned_cols=144  Identities=22%  Similarity=0.311  Sum_probs=113.9

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      +..+||++++++|+.++.     ++++|++++||++++.++.+++++|.+.+++.++++.+. +  ..+|+++.+|++|+
T Consensus        79 ~~~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~--~~~~~~v~~d~~~~  150 (231)
T cd04183          79 GETLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS-S--HPRWSYVKLDENGR  150 (231)
T ss_pred             CCCCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC-C--CCCeEEEEECCCCC
Confidence            457899999999999885     137899999999999999999999988888888777654 2  45799999998999


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHH-HHHHHHHhhC----CC-CCchhhhhhhhhhhc
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRWRY----PT-SNDFGSEIIPAAIME  169 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~-vl~~~l~~~~----~~-~~~~~~d~l~~l~~~  169 (353)
                      |..+.||+..                       +.++++|+|+|+++ .|...++...    .. ...+..++++.++++
T Consensus       151 v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~  207 (231)
T cd04183         151 VIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILD  207 (231)
T ss_pred             EEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHc
Confidence            9999988531                       35789999999997 5544554311    11 122356899999877


Q ss_pred             C-cEEEEEe-cceEeEcCCHHHH
Q 018622          170 H-DVQAYIF-RDYWEDIGTIKSF  190 (353)
Q Consensus       170 ~-~i~~~~~-~g~w~dIgtp~~y  190 (353)
                      + ++.+|.+ +++|.|+|||++|
T Consensus       208 g~~v~~~~~~~~~w~di~t~~dl  230 (231)
T cd04183         208 GKKVGIYLIDKDDYHSFGTPEDL  230 (231)
T ss_pred             CCEEEEEEeccccEEEcCChHhc
Confidence            5 6999999 6999999999987

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=99.62  E-value=1.9e-15  Score=138.44  Aligned_cols=157  Identities=17%  Similarity=0.265  Sum_probs=111.9

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe--cCHHHHHHHHHH---CCCcEEEEEEEeCCCCCCcceEEEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVD---RDADITISCAAVGESRASDYGLVKI   90 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~--~dl~~~~~~h~~---~~a~~tll~~~~~~~~~~~~g~v~~   90 (353)
                      +..+||++|++.+..++.+  ..+++.++|++||+++.  .+|.++++.|.+   +++.+|+.+.+..+  .+.||++..
T Consensus        81 p~~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~--~t~yGyI~~  156 (274)
T cd02509          81 PEGRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRP--ETGYGYIEA  156 (274)
T ss_pred             CCCCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCC--CCCeEEEEe
Confidence            4467999999999998863  22457899999999886  567777765543   67788888887654  578999999


Q ss_pred             CCCC-----CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCC---------
Q 018622           91 DNMG-----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN---------  156 (353)
Q Consensus        91 d~~g-----~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~---------  156 (353)
                      |++.     +|.+|.|||+.+++++..             ....+++|+|+|+|++++|...+++..|...         
T Consensus       157 ~~~~~~~~~~V~~f~EKP~~~~a~~~~-------------~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~  223 (274)
T cd02509         157 GEKLGGGVYRVKRFVEKPDLETAKEYL-------------ESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAA  223 (274)
T ss_pred             CCcCCCCceEEeEEEECcChHHHHHHh-------------hcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHh
Confidence            8653     899999999866543211             1124689999999999888777765543211         


Q ss_pred             -------chhhhhhhh---------hhh-cCcEEEEEecceEeEcCCHHH
Q 018622          157 -------DFGSEIIPA---------AIM-EHDVQAYIFRDYWEDIGTIKS  189 (353)
Q Consensus       157 -------~~~~d~l~~---------l~~-~~~i~~~~~~g~w~dIgtp~~  189 (353)
                             .+..+.++.         .++ ..++.+++.+..|.|+|++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~  273 (274)
T cd02509         224 AGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA  273 (274)
T ss_pred             cCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence                   111233333         122 267888999999999999865

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.62  E-value=5.2e-15  Score=125.18  Aligned_cols=125  Identities=14%  Similarity=0.281  Sum_probs=95.7

Q ss_pred             CCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhh
Q 018622          209 PKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLL  284 (353)
Q Consensus       209 ~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~  284 (353)
                      +...+.+.+.+++++.|.. +.+. +++||++|.|+ ++.|. +++|+++|.|++++.|.++++..+             
T Consensus        10 ~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~-------------   76 (163)
T cd05636          10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG-------------   76 (163)
T ss_pred             CCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC-------------
Confidence            4444555555666666643 5554 58889999998 67775 699999999999999999888877             


Q ss_pred             cCCCcceEeCCCeEEcceEeCCCCEECCCeEEccC------------------------CCcccccCCCCceEEccCeEE
Q 018622          285 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK------------------------DDVQEADRPELGFYIRSGITI  340 (353)
Q Consensus       285 ~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~------------------------~~~~~~~~~~~~~~i~~~~~v  340 (353)
                            +.|++++.+.+++|++++.|++++++.+.                        ..+++.+.++.++.|..+ +.
T Consensus        77 ------~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g-~~  149 (163)
T cd05636          77 ------TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG-VK  149 (163)
T ss_pred             ------CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC-cE
Confidence                  89999999999999999999999988652                        234455556666666555 35


Q ss_pred             ecCCcEECCCccC
Q 018622          341 IMEKATIEDGMVI  353 (353)
Q Consensus       341 ig~~~~i~~g~vv  353 (353)
                      ||++++|++|++|
T Consensus       150 ig~~~~i~agsvV  162 (163)
T cd05636         150 IGPGSWVYPGCVV  162 (163)
T ss_pred             ECCCCEECCCcEe
Confidence            6888888888875

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=99.58  E-value=1.6e-14  Score=128.93  Aligned_cols=145  Identities=14%  Similarity=0.148  Sum_probs=107.4

Q ss_pred             ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622           18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA   97 (353)
Q Consensus        18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~   97 (353)
                      .+|++++++.++.++.       ++|++++||++++.   ++++.|.++++++|+++.+..+.....|+....|+ +++.
T Consensus        78 ~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~  146 (229)
T cd02523          78 ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDLDDA-GVLL  146 (229)
T ss_pred             hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeeecCc-cceE
Confidence            5799999999999884       78999999999865   56777888888999988874433344566555443 7899


Q ss_pred             EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHh---hCC--CCCchhhhhhhhhhhcCc-
Q 018622           98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYP--TSNDFGSEIIPAAIMEHD-  171 (353)
Q Consensus        98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~---~~~--~~~~~~~d~l~~l~~~~~-  171 (353)
                      .+.+||..+.                    ...+.++|+|+|++++|..+.+.   ..+  ...++.+++++.++++.+ 
T Consensus       147 ~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~  206 (229)
T cd02523         147 GIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGV  206 (229)
T ss_pred             eecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCe
Confidence            9999986543                    13578999999999998755332   111  123556789999887444 


Q ss_pred             -EEEEEecceEeEcCCHHHHHHHH
Q 018622          172 -VQAYIFRDYWEDIGTIKSFYEAN  194 (353)
Q Consensus       172 -i~~~~~~g~w~dIgtp~~y~~a~  194 (353)
                       +..+.. ++|.|||+|++|++|+
T Consensus       207 ~v~~~~~-~~w~dI~~~ed~~~a~  229 (229)
T cd02523         207 KVKDISD-GFWYEIDDLEDLERAE  229 (229)
T ss_pred             eEEEcCC-CCEEEeCCHHHHHhhC
Confidence             445555 8999999999999873

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.57  E-value=6.9e-14  Score=127.19  Aligned_cols=96  Identities=11%  Similarity=0.091  Sum_probs=47.1

Q ss_pred             eEcCCHHHHHHHHHhhccCCCc-cc------ccCCCCceecCCCCCCCeEEec-eeee-ce------EECCCcEEC-ceE
Q 018622          182 EDIGTIKSFYEANMALTKESPA-FH------FYDPKTPFYTSPRFLPPTKIDN-CRIK-DA------IISHGCFLR-ECT  245 (353)
Q Consensus       182 ~dIgtp~~y~~a~~~ll~~~~~-~~------~~~~~~~i~~~~~i~~~~~i~~-~~i~-~~------~ig~~~~i~-~~~  245 (353)
                      +-..+|.-.+....+++.+.+. ..      .++|.+.+..++.++++++|+. +.|. ++      +||++|+|+ ++.
T Consensus        76 Lv~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~  155 (338)
T COG1044          76 LVVKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTV  155 (338)
T ss_pred             EEeCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcE
Confidence            3334466666665555543211 11      3345555555555666666652 4442 34      444444444 222


Q ss_pred             E-eeeEEcCCcEECCCCEEeceEEECCccccch
Q 018622          246 V-EHSIVGERSRLDYGVELKDTVMLGADYYQTE  277 (353)
Q Consensus       246 v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~  277 (353)
                      + .+++|++++.||++|.|+...+++.+.++..
T Consensus       156 i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a  188 (338)
T COG1044         156 IHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYA  188 (338)
T ss_pred             EcCCCEEecCcEECCceEECCCCEEccCccccc
Confidence            2 2455555555555555555555555555444

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.57  E-value=2.1e-14  Score=124.94  Aligned_cols=142  Identities=22%  Similarity=0.276  Sum_probs=96.2

Q ss_pred             CCCCceecCCCCCCCeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEEC-CccccchhHH-HHh
Q 018622          208 DPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLG-ADYYQTESEI-ASL  283 (353)
Q Consensus       208 ~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~-~~~~~~~~~~-~~~  283 (353)
                      ++.+.+.+++.++++++|+. +.+.++.|+++|.|+ ++.+.+++|++++.|++++.|+..+.++ +..++...+. .+.
T Consensus        25 ~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~  104 (193)
T cd03353          25 DPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKST  104 (193)
T ss_pred             CCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecce
Confidence            34444555555666666653 667777888888888 6777888888888888888887554444 3334444433 245


Q ss_pred             hcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCC-------cccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          284 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       284 ~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      ++++   +.|++.+.+.+|+||+++.||+++.+.+...       +++.++++.++.+..+ ..||++++|++|++|
T Consensus       105 ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V  177 (193)
T cd03353         105 IGEG---SKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTI  177 (193)
T ss_pred             EcCC---CEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEE
Confidence            5555   6777777777899999999999998876432       3344444444444444 357999999999875

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.56  E-value=4e-14  Score=138.89  Aligned_cols=163  Identities=16%  Similarity=0.258  Sum_probs=111.9

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe--cCHHHHHHHH---HHCCCcEEEEEEEeCCCCCCcceEEEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSH---VDRDADITISCAAVGESRASDYGLVKI   90 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~--~dl~~~~~~h---~~~~a~~tll~~~~~~~~~~~~g~v~~   90 (353)
                      +.++|||+|+..|..++.+.. .+++.++|++||++..  .+|.++++++   .++++.+|+...+..+  .+.||++..
T Consensus        81 p~~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p--~t~YGyI~~  157 (468)
T TIGR01479        81 PVGRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHP--ETGYGYIRR  157 (468)
T ss_pred             ccccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCC--CCCceEEEe
Confidence            567899999999887774200 1345699999998764  3488887764   4456667777766544  578999999


Q ss_pred             CC------CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCC---------
Q 018622           91 DN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS---------  155 (353)
Q Consensus        91 d~------~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~---------  155 (353)
                      |+      .++|.+|.|||+.++++++             +..++++||+|+|+|+++.|...+++..|..         
T Consensus       158 ~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~  224 (468)
T TIGR01479       158 GEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVE  224 (468)
T ss_pred             CCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHH
Confidence            73      2589999999986543221             1113469999999999776655555443311         


Q ss_pred             --------Cchhhhhhhh---------hhhc-CcEEEEEecceEeEcCCHHHHHHHH
Q 018622          156 --------NDFGSEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEAN  194 (353)
Q Consensus       156 --------~~~~~d~l~~---------l~~~-~~i~~~~~~g~w~dIgtp~~y~~a~  194 (353)
                              ..+..++++.         ++++ .++.+.+.+..|.|+|++++++++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~  281 (468)
T TIGR01479       225 ASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS  281 (468)
T ss_pred             hccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence                    1111234442         2233 5789999999999999999998864

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.56  E-value=1.1e-14  Score=128.99  Aligned_cols=121  Identities=17%  Similarity=0.285  Sum_probs=95.6

Q ss_pred             ccccccHHHHHHH--HHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHC-----CCcEEEEEEEeCCCCC----Cc
Q 018622           16 NWFQGTADAVRQF--TWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR-----DADITISCAAVGESRA----SD   84 (353)
Q Consensus        16 ~~~lGT~~al~~a--~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~-----~a~~tll~~~~~~~~~----~~   84 (353)
                      +...|||+|++..  +.++.       ++|+|++||++++.|+.+++++|+++     ++++|+++.+++++..    ..
T Consensus        85 ~~~~~~~~al~~~~~~~~~~-------~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~  157 (217)
T cd04197          85 EDCRSLGDALRDLDAKGLIR-------GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGE  157 (217)
T ss_pred             CCcCccchHHHHHhhccccC-------CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCC
Confidence            4567899999654  33443       68999999999999999999999984     8899999988765331    23


Q ss_pred             ceEEEECCC-CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHH
Q 018622           85 YGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL  144 (353)
Q Consensus        85 ~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl  144 (353)
                      ++++.+|++ ++|+.|.|||..+....+.++.+++..+++. .+++++.++|+|+|++++|
T Consensus       158 ~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl  217 (217)
T cd04197         158 EFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL  217 (217)
T ss_pred             ceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence            678888866 8999999999877655556666666666654 4678999999999999875

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=99.54  E-value=1e-13  Score=121.32  Aligned_cols=112  Identities=46%  Similarity=0.818  Sum_probs=94.2

Q ss_pred             CCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           14 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        14 ~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      ++++++|||+||+++++++++   .++++|+|++||++++.++.++++.|+++++++|+++.                  
T Consensus        88 ~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------------------  146 (200)
T cd02508          88 GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------------------  146 (200)
T ss_pred             CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------------------
Confidence            347889999999999999962   12478999999999999999999999999988888765                  


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC-CCCchhhhhhhhhhhcCcE
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSNDFGSEIIPAAIMEHDV  172 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~-~~~~~~~d~l~~l~~~~~i  172 (353)
                                                            +++|+|+|++++|..+++.... ...++.+|+++.+++++++
T Consensus       147 --------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v  188 (200)
T cd02508         147 --------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKI  188 (200)
T ss_pred             --------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcE
Confidence                                                  1679999999999767665322 2346788999999999999


Q ss_pred             EEEEecceEeEc
Q 018622          173 QAYIFRDYWEDI  184 (353)
Q Consensus       173 ~~~~~~g~w~dI  184 (353)
                      .+|.++|+|.||
T Consensus       189 ~~~~~~g~w~di  200 (200)
T cd02508         189 YAYEFNGYWADI  200 (200)
T ss_pred             EEEEeCCeEecC
Confidence            999999999986

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.53  E-value=2.2e-13  Score=127.34  Aligned_cols=47  Identities=11%  Similarity=-0.070  Sum_probs=27.7

Q ss_pred             eEeEcCCHHHHHHHHHhhccCCC-cccccCCCCceecCCCCCCCeEEe
Q 018622          180 YWEDIGTIKSFYEANMALTKESP-AFHFYDPKTPFYTSPRFLPPTKID  226 (353)
Q Consensus       180 ~w~dIgtp~~y~~a~~~ll~~~~-~~~~~~~~~~i~~~~~i~~~~~i~  226 (353)
                      .++-+++|...+..-..++...+ ....++|.+.+++++.++++++|.
T Consensus        66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~  113 (324)
T TIGR01853        66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIG  113 (324)
T ss_pred             eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEEC
Confidence            46778899877766666664332 223355666666655555555553

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.51  E-value=2.9e-13  Score=122.11  Aligned_cols=165  Identities=15%  Similarity=0.175  Sum_probs=107.8

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe-EE-ecCHHHHHHHHHHCCCcEEEEEEEeCC----CCCCcceEEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVGE----SRASDYGLVK   89 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~-i~-~~dl~~~~~~h~~~~a~~tll~~~~~~----~~~~~~g~v~   89 (353)
                      +++.||+++...+. .+..   ...+.|++++||+ +. ..+++++++.|+++++++++++.+..+    ..++.++++ 
T Consensus        71 ~~~~gt~~~~~~~~-~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-  145 (245)
T PRK05450         71 DHPSGTDRIAEAAA-KLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-  145 (245)
T ss_pred             cCCCchHHHHHHHH-hcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-
Confidence            45678887654433 3320   1236699999998 44 567899999988777777777666522    224567766 


Q ss_pred             ECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchh--hhhhhhhh
Q 018622           90 IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG--SEIIPAAI  167 (353)
Q Consensus        90 ~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~--~d~l~~l~  167 (353)
                      +|++|+|+.|.|||..+....  .+.     +    +..+.+.++|+|+|++++|..+.+.. +...+..  .+.++.+.
T Consensus       146 ~d~~g~v~~~~e~~~~~~~~~--~~~-----~----~~~~~~~~~Giy~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~  213 (245)
T PRK05450        146 LDADGRALYFSRAPIPYGRDA--FAD-----S----APTPVYRHIGIYAYRRGFLRRFVSLP-PSPLEKIESLEQLRALE  213 (245)
T ss_pred             eCCCCcEEEecCCCCCCCCCc--ccc-----c----cCccccEEEEEEecCHHHHHHHHhCC-CCccccchhHHHHHHHH
Confidence            888899999999985331100  000     0    00247999999999999998765422 2211111  11223223


Q ss_pred             hcCcEEEEEecc-eEeEcCCHHHHHHHHHhh
Q 018622          168 MEHDVQAYIFRD-YWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       168 ~~~~i~~~~~~g-~w~dIgtp~~y~~a~~~l  197 (353)
                      +..++.++..++ +|.|||+|++|.+|++.+
T Consensus       214 ~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~  244 (245)
T PRK05450        214 NGYRIHVVVVEEAPSIGVDTPEDLERVRALL  244 (245)
T ss_pred             CCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence            346899999996 999999999999998754

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.50  E-value=3.4e-13  Score=105.16  Aligned_cols=103  Identities=32%  Similarity=0.531  Sum_probs=85.9

Q ss_pred             CeEEec-eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc
Q 018622          222 PTKIDN-CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR  300 (353)
Q Consensus       222 ~~~i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~  300 (353)
                      |++|+. +.+++++||++|.|+++.+.+|+|+++|.|++++.|.+++++++                   +.|+.++.+.
T Consensus         1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~   61 (104)
T cd04651           1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR   61 (104)
T ss_pred             CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence            355653 77788999999999988999999999999999999999999988                   8999999999


Q ss_pred             ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEE
Q 018622          301 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI  347 (353)
Q Consensus       301 ~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i  347 (353)
                      +|+|++++.|++++.+.+..... .   .+..+..++.++|+.++++
T Consensus        62 ~siig~~~~Ig~~~~v~~~~~~~-~---~~~~~~~~~~~~~~~~~~~  104 (104)
T cd04651          62 RAIIDKNVVIPDGVVIGGDPEED-R---ARFYVTEDGIVVVGKGMVI  104 (104)
T ss_pred             eEEECCCCEECCCCEECCCcccc-c---ccceEcCCeEEEEecccCC
Confidence            99999999999999998763221 1   1445567777788877653

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.49  E-value=2.1e-13  Score=123.96  Aligned_cols=143  Identities=13%  Similarity=0.236  Sum_probs=67.0

Q ss_pred             CCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEec------------eEEECC
Q 018622          208 DPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD------------TVMLGA  271 (353)
Q Consensus       208 ~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~------------~v~~~~  271 (353)
                      +|.+.+.+++.+++++.|++ +.+. ++.||++|.|+ ++.|. +++||++|.|+++|.|++            .+.+++
T Consensus         6 ~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~   85 (262)
T PRK05289          6 HPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGD   85 (262)
T ss_pred             CCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECC
Confidence            44444555554444444443 3332 45555555555 33333 456666666666666553            233332


Q ss_pred             c-cccchhHHH-Hh-hcCCCcceEeCCCeEEc-------ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEe
Q 018622          272 D-YYQTESEIA-SL-LAEGKVPIGVGRNTKIR-------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITII  341 (353)
Q Consensus       272 ~-~~~~~~~~~-~~-~~~~~~~~~ig~~~~i~-------~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vi  341 (353)
                      + .++..+.+. +. ...+.  +.||+++.|.       +|+||+++.+++++.+.+...+++.+.++.++.|..+ +.|
T Consensus        86 ~~~I~e~~~I~~~~~~~~~~--t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~-v~I  162 (262)
T PRK05289         86 NNTIREFVTINRGTVQGGGV--TRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQF-VRI  162 (262)
T ss_pred             CCEECCCeEEecccccCCCe--eEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCC-CEE
Confidence            2 222222221 00 00000  3445444443       3444444444444444444444444444444444444 246


Q ss_pred             cCCcEECCCccC
Q 018622          342 MEKATIEDGMVI  353 (353)
Q Consensus       342 g~~~~i~~g~vv  353 (353)
                      |++++|++||+|
T Consensus       163 g~~~~Ig~gs~V  174 (262)
T PRK05289        163 GAHAMVGGMSGV  174 (262)
T ss_pred             CCCCEEeeecce
Confidence            888888888875

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.49  E-value=3.2e-13  Score=122.45  Aligned_cols=62  Identities=11%  Similarity=0.107  Sum_probs=34.0

Q ss_pred             eEeCCCeEE-cceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          291 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       291 ~~ig~~~~i-~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +.|++++.| .+|+||+++.|++++.+..+..+++.+.++.++.|..+ +.||++++|+++++|
T Consensus       109 ~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V  171 (254)
T cd03351         109 NLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF-CRIGRHAMVGGGSGV  171 (254)
T ss_pred             CEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC-cEECCCCEECcCCEE
Confidence            344444444 24455555555555544444445555555555555545 345888888888764

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=99.49  E-value=4.2e-13  Score=120.62  Aligned_cols=158  Identities=14%  Similarity=0.222  Sum_probs=105.7

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHC-CCcEEEEEEEeCCCC----CCcceEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR-DADITISCAAVGESR----ASDYGLV   88 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~-~a~~tll~~~~~~~~----~~~~g~v   88 (353)
                      .+++||++ +..+...+..    ..+.|++++||+  +...+++.+++.|.+. ++++++++.+.+++.    ...|+ |
T Consensus        71 ~~~~gt~~-~~~~~~~~~~----~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v  144 (239)
T cd02517          71 DHPSGTDR-IAEVAEKLDA----DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVK-V  144 (239)
T ss_pred             ccCchhHH-HHHHHHhcCC----CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCE-E
Confidence            44678986 5555555541    136799999997  4567899999988776 788898888865411    22334 5


Q ss_pred             EECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhh--hh
Q 018622           89 KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIP--AA  166 (353)
Q Consensus        89 ~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~--~l  166 (353)
                      .+|++|+|+.|.+||..+...  +.            +....++++|+|+|++++|+.+.+.. ....+ ..+.++  .+
T Consensus       145 ~~~~~~~v~~~~~~~~~~~~~--~~------------~~~~~~~~~Giy~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~  208 (239)
T cd02517         145 VLDKDGYALYFSRSPIPYPRD--SS------------EDFPYYKHIGIYAYRRDFLLRFAALP-PSPLE-QIESLEQLRA  208 (239)
T ss_pred             EECCCCCEEEecCCCCCCCCC--CC------------CCCceeEEEEEEEECHHHHHHHHhCC-Cchhh-hhhhHHHHHH
Confidence            567789999998765322100  00            00136899999999999998665421 11111 123332  34


Q ss_pred             hhc-CcEEEEEecceEeEcCCHHHHHHHHH
Q 018622          167 IME-HDVQAYIFRDYWEDIGTIKSFYEANM  195 (353)
Q Consensus       167 ~~~-~~i~~~~~~g~w~dIgtp~~y~~a~~  195 (353)
                      +++ .++.++..+++|.|||||++|.+|++
T Consensus       209 ~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~  238 (239)
T cd02517         209 LENGYKIKVVETDHESIGVDTPEDLERVEA  238 (239)
T ss_pred             HHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence            555 46999999999999999999999874

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.48  E-value=2.5e-13  Score=123.54  Aligned_cols=145  Identities=18%  Similarity=0.234  Sum_probs=91.5

Q ss_pred             cCCCCceecCCCCCCCeEEec-eee-eceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEE-------------
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVML-------------  269 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i-~~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~-------------  269 (353)
                      +.++..|.+++.|++++.|.. +.| .++.||++|+|. ++.|. ++.||++|.|+++++|+...-.             
T Consensus       120 ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q  199 (338)
T COG1044         120 IGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQ  199 (338)
T ss_pred             cCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcce
Confidence            345566666666666666653 555 367777777777 56664 4888888888888888754221             


Q ss_pred             -CCccccchhHHH--HhhcCCCc-ceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEE----
Q 018622          270 -GADYYQTESEIA--SLLAEGKV-PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI----  340 (353)
Q Consensus       270 -~~~~~~~~~~~~--~~~~~~~~-~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~v----  340 (353)
                       +...++..+|+.  +.+.++.. .|.|+.++.|. .+.|++||.||++|.+.+..++.+.+.||+.+.|++.+.+    
T Consensus       200 ~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~  279 (338)
T COG1044         200 IGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHL  279 (338)
T ss_pred             eceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCce
Confidence             122223333332  22222211 15667777776 4778888888888888888888888888888888766443    


Q ss_pred             -ecCCcEECCCc
Q 018622          341 -IMEKATIEDGM  351 (353)
Q Consensus       341 -ig~~~~i~~g~  351 (353)
                       ||++++|++.+
T Consensus       280 ~IgD~~~I~~~~  291 (338)
T COG1044         280 EIGDGVTIGARS  291 (338)
T ss_pred             EEcCCCEEeccc
Confidence             55555555443

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.47  E-value=8.5e-13  Score=124.83  Aligned_cols=52  Identities=19%  Similarity=0.158  Sum_probs=27.2

Q ss_pred             eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeE-----EecCCcEECCCccC
Q 018622          302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMVI  353 (353)
Q Consensus       302 ~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----vig~~~~i~~g~vv  353 (353)
                      +.|+++|.||+++.+.....+...+++|+++.|+.+..     .||++++|+++++|
T Consensus       238 v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v  294 (343)
T PRK00892        238 VQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV  294 (343)
T ss_pred             eEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence            34444455555554444444444455555555544433     35777777777654

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.47  E-value=7e-13  Score=119.70  Aligned_cols=63  Identities=17%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeE-----EecCCcEECCCccC
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMVI  353 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----vig~~~~i~~g~vv  353 (353)
                      ++||+++.+. ++.|+++|.||+++.+.++..+...++|+++++|+.++.     .||++++|++|++|
T Consensus       102 t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V  170 (255)
T PRK12461        102 TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRI  170 (255)
T ss_pred             EEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceE
Confidence            6677777665 666777777777777777666666666666666665533     36777777777764

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.46  E-value=2.1e-13  Score=126.78  Aligned_cols=99  Identities=22%  Similarity=0.369  Sum_probs=72.1

Q ss_pred             eeEEcCCcEECCCCEEeceEEECCccccchhHH-HHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccc
Q 018622          248 HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEA  325 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~  325 (353)
                      ++.||++|+||++|+|.+|.+-.+..+..++.+ .|.++++   +.||+.++++ ++.|+++++||..+.+.+. .++..
T Consensus       286 ~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~---~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a-~ig~g  361 (460)
T COG1207         286 NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG---ATVGPFARLRPGAVLGADVHIGNFVEVKKA-TIGKG  361 (460)
T ss_pred             eEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC---cccCCccccCCcCcccCCCeEeeeEEEecc-cccCC
Confidence            455555555555555555555544444444444 2444444   8999999999 9999999999999999874 58888


Q ss_pred             cCCCCceEEccCeEEecCCcEECCCcc
Q 018622          326 DRPELGFYIRSGITIIMEKATIEDGMV  352 (353)
Q Consensus       326 ~~~~~~~~i~~~~~vig~~~~i~~g~v  352 (353)
                      ++.++.+||++  ..||+++.||+||+
T Consensus       362 sKa~HLtYlGD--A~iG~~~NiGAGtI  386 (460)
T COG1207         362 SKAGHLTYLGD--AEIGENVNIGAGTI  386 (460)
T ss_pred             ccccceeeecc--ceecCCceeccceE
Confidence            89999999988  56799999999886

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.46  E-value=5.6e-13  Score=120.87  Aligned_cols=94  Identities=12%  Similarity=0.133  Sum_probs=52.1

Q ss_pred             eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEE-cceEeCCCCEECCCeEEccCCCccccc
Q 018622          248 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEAD  326 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i-~~~iig~~~~Ig~~~~i~~~~~~~~~~  326 (353)
                      +++||++|.|+++|+|..+...+..        .+.++++   +.|++++.| .+|.||+++.|++++.+..+..+++.+
T Consensus        76 ~v~IG~~~~I~~~~~I~~~~~~~~~--------~~~IG~~---~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~  144 (254)
T TIGR01852        76 ELIIGDNNTIREFVTINRGTASGGG--------VTRIGNN---NLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYA  144 (254)
T ss_pred             eEEECCCCEECCCCEECCcccCCCC--------cEEECCC---CEECCCCEEccCCEECCCCEECCCCEECCCcEECCCc
Confidence            4556666666666666554332200        0112222   444444444 356666666666666666555566666


Q ss_pred             CCCCceEEccCeEEecCCcEECCCccC
Q 018622          327 RPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       327 ~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      .++.++.|..+ +.||++++|+++++|
T Consensus       145 ~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V  170 (254)
T TIGR01852       145 IIGGLVAVHQF-VRIGRYAMIGGLSAV  170 (254)
T ss_pred             EEeccCEECCC-cEECCCCEEeeeeeE
Confidence            66666666555 345888888888764

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.46  E-value=1.5e-12  Score=116.00  Aligned_cols=151  Identities=22%  Similarity=0.312  Sum_probs=114.3

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      ..+||++++++++.++++    ..+.|++++||.  +...++.++++.|.+.++++++++.+.++  +..|+.+..|+++
T Consensus        71 ~~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~  144 (229)
T cd02540          71 EQLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED--PTGYGRIIRDGNG  144 (229)
T ss_pred             CCCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC--CCCccEEEEcCCC
Confidence            347999999999999862    247899999998  44678999999998888888887777654  6789988888789


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-C
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME-H  170 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~-~  170 (353)
                      +|..+.||+.....+                 ....++++|+|+|+++.|..+++....   ....+..++++.++++ .
T Consensus       145 ~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~  207 (229)
T cd02540         145 KVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGL  207 (229)
T ss_pred             CEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCC
Confidence            999999987532110                 012578999999999877666665332   1234567899999876 5


Q ss_pred             cEEEEEecce--EeEcCCHHHH
Q 018622          171 DVQAYIFRDY--WEDIGTIKSF  190 (353)
Q Consensus       171 ~i~~~~~~g~--w~dIgtp~~y  190 (353)
                      +|.+|.++||  |+.+++|.++
T Consensus       208 ~v~~~~~~~~~~~~~~~~~~~~  229 (229)
T cd02540         208 KVAAVLADDEEEVLGVNDRVQL  229 (229)
T ss_pred             EEEEEEcCCcceEecCCChHhC
Confidence            7999999865  6778888763

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.46  E-value=4.9e-13  Score=121.25  Aligned_cols=62  Identities=13%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      ++||+++.|. ++.|++++.||+++.+.+...+...++|++++.|+.+ +.|..+++|+++++|
T Consensus       103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~-~~i~~~v~Ig~~~~I  165 (254)
T cd03351         103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGL-SAVHQFCRIGRHAMV  165 (254)
T ss_pred             eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCc-ceECCCcEECCCCEE
Confidence            6777777776 6777777777777888777777777888888888777 455777888888764

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.43  E-value=6.9e-13  Score=110.38  Aligned_cols=100  Identities=17%  Similarity=0.345  Sum_probs=61.8

Q ss_pred             ceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcc
Q 018622          212 PFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVP  290 (353)
Q Consensus       212 ~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~  290 (353)
                      .+.+++.+.|.+.|-+    ++.||+++.|+ +++++.-.  ...+||+++.|++.++++..     ...+.++|++   
T Consensus        13 ~i~~~a~Va~~A~viG----dV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~-----~~~p~~IG~~---   78 (176)
T COG0663          13 KIDPTAFVAPSATVIG----DVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHAD-----PGYPVTIGDD---   78 (176)
T ss_pred             CCCCceEECCCCEEEE----eEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecC-----CCCCeEECCC---
Confidence            3445555555555433    45555555555 23332111  33555555666655555542     1134556666   


Q ss_pred             eEeCCCeEEcceEeCCCCEECCCeEEccCCCcccc
Q 018622          291 IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA  325 (353)
Q Consensus       291 ~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~  325 (353)
                      +.||+++.|++|.|+++|.||.++++.++..+++.
T Consensus        79 vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~  113 (176)
T COG0663          79 VTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDG  113 (176)
T ss_pred             cEEcCccEEEEeEECCCcEEecCceEeCCcEECCC
Confidence            89999999999999999999999999987444333

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.42  E-value=9.4e-13  Score=123.04  Aligned_cols=62  Identities=23%  Similarity=0.286  Sum_probs=37.8

Q ss_pred             EeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeE-----EecCCcEECCCccC
Q 018622          292 GVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMVI  353 (353)
Q Consensus       292 ~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----vig~~~~i~~g~vv  353 (353)
                      .||+++.|. .+.|++++.||+++.+.+...+...+++|+++.++.+..     .||++++|+++++|
T Consensus       219 ~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V  286 (324)
T TIGR01853       219 IIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV  286 (324)
T ss_pred             eecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence            444444444 455666666666666666655555666666666654432     36888888887764

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.42  E-value=2.2e-12  Score=116.97  Aligned_cols=139  Identities=15%  Similarity=0.179  Sum_probs=73.2

Q ss_pred             CCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEec------------eEEECCc-c
Q 018622          209 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKD------------TVMLGAD-Y  273 (353)
Q Consensus       209 ~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~------------~v~~~~~-~  273 (353)
                      +.+.+..++.|+|.++|.+    ++.|+++|.|+ ++.| .++.||++|.|+++++|+.            .+.++.+ .
T Consensus         9 ~~a~Ig~~~~I~~~~~I~~----~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~   84 (254)
T TIGR01852         9 PGAEIGENVEIGPFCIVGP----GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNT   84 (254)
T ss_pred             CCCEECCCCEECCCCEECC----CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCE
Confidence            3333444444444444432    45555555555 3333 3578888888888888863            3444433 1


Q ss_pred             ccchhHHH-HhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCc
Q 018622          274 YQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM  351 (353)
Q Consensus       274 ~~~~~~~~-~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~  351 (353)
                      ++....+. ....+ ...+.||+++.|. ++.|++++.||+++.+.++..+...++|++++.|+.+ +.|..+++|++++
T Consensus        85 I~~~~~I~~~~~~~-~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~-~~i~~~v~Ig~~~  162 (254)
T TIGR01852        85 IREFVTINRGTASG-GGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGL-VAVHQFVRIGRYA  162 (254)
T ss_pred             ECCCCEECCcccCC-CCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEecc-CEECCCcEECCCC
Confidence            22222211 11110 0014555555554 5555566666666666666656666666666666666 3446667777766


Q ss_pred             cC
Q 018622          352 VI  353 (353)
Q Consensus       352 vv  353 (353)
                      +|
T Consensus       163 ~I  164 (254)
T TIGR01852       163 MI  164 (254)
T ss_pred             EE
Confidence            54

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.41  E-value=2e-12  Score=111.76  Aligned_cols=99  Identities=16%  Similarity=0.348  Sum_probs=67.8

Q ss_pred             eecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEe-----ceEEECCccccchhHHHH
Q 018622          213 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK-----DTVMLGADYYQTESEIAS  282 (353)
Q Consensus       213 i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~-----~~v~~~~~~~~~~~~~~~  282 (353)
                      +.+++.|.+.+.|.+    ++.||++|.|+ ++.|.    ..+||++|.||++|+|.     ++++.++           
T Consensus        11 i~~~~~I~~~a~I~G----~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~-----------   75 (192)
T TIGR02287        11 VHPEAYVHPTAVLIG----DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN-----------   75 (192)
T ss_pred             CCCCcEECCCCEEEe----eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC-----------
Confidence            444555555555543    45666666666 44443    47889999999999994     4555555           


Q ss_pred             hhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEE
Q 018622          283 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI  334 (353)
Q Consensus       283 ~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i  334 (353)
                              +.|++++.|.+|+|++++.||.++.+.++..+++.+.++.++.+
T Consensus        76 --------~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V  119 (192)
T TIGR02287        76 --------GHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFV  119 (192)
T ss_pred             --------CEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEE
Confidence                    89999999999999999999999998776444444433333333

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.40  E-value=2.7e-12  Score=108.51  Aligned_cols=111  Identities=14%  Similarity=0.129  Sum_probs=72.6

Q ss_pred             ceEECCCcEEC-ceEE----eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCC
Q 018622          232 DAIISHGCFLR-ECTV----EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK  306 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v----~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~  306 (353)
                      ++.||++|.|+ ++.+    ..++||++|.|+++|.|.+++.+...     ......++++   +.+..++.+.+++||+
T Consensus        17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~-----~~~~v~IG~~---~~i~~~~~i~~~~IGd   88 (164)
T cd04646          17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPA-----EPKPMIIGSN---NVFEVGCKCEALKIGN   88 (164)
T ss_pred             ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCC-----CCCCeEECCC---CEECCCcEEEeeEECC
Confidence            45566666665 3444    24799999999999999887553210     0000112222   6777788888899999


Q ss_pred             CCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCc
Q 018622          307 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM  351 (353)
Q Consensus       307 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~  351 (353)
                      +|.||+++.+..+..+++.+.++.+++|..+ +.|+++++++.+.
T Consensus        89 ~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~-~~i~~~~vi~g~~  132 (164)
T cd04646          89 NNVFESKSFVGKNVIITDGCIIGAGCKLPSS-EILPENTVIYGAD  132 (164)
T ss_pred             CCEEeCCCEECCCCEECCCCEEeCCeEECCC-cEECCCeEEeCCc
Confidence            9999999999887666666666666666555 2336666665543

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.39  E-value=3.4e-12  Score=110.96  Aligned_cols=95  Identities=16%  Similarity=0.334  Sum_probs=58.2

Q ss_pred             cCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCCc
Q 018622          215 TSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKV  289 (353)
Q Consensus       215 ~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~~  289 (353)
                      +.+.+++++.|.. +.+. ++.||++|.|+ ++.|.++.|+++|.|++++.|+++++.++..++....+  .+.++++  
T Consensus        14 ~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~--   91 (193)
T cd03353          14 GDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG--   91 (193)
T ss_pred             CCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC--
Confidence            3344445555542 4443 68889999998 68888899999999999999998888777433333322  1333333  


Q ss_pred             ceEeCCCeEEcceEeCCCCEECC
Q 018622          290 PIGVGRNTKIRNCIIDKNVKIGK  312 (353)
Q Consensus       290 ~~~ig~~~~i~~~iig~~~~Ig~  312 (353)
                       +.|++++.+.+++|++++.|+.
T Consensus        92 -~~Ig~~~~i~~s~ig~~~~i~~  113 (193)
T cd03353          92 -VHIGNFVEIKKSTIGEGSKANH  113 (193)
T ss_pred             -CEECCcEEEecceEcCCCEecc
Confidence             3444444444444444444443

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.37  E-value=5e-12  Score=106.00  Aligned_cols=96  Identities=19%  Similarity=0.438  Sum_probs=66.5

Q ss_pred             ceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEE-----eceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcc
Q 018622          232 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN  301 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~  301 (353)
                      ++.||++|.|+ ++.|.    .+.||++|.|+++|+|     .++++..+                   +.|++++.+.+
T Consensus        18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~   78 (155)
T cd04745          18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN-------------------GHIGHGAILHG   78 (155)
T ss_pred             cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC-------------------CEECCCcEEEC
Confidence            45666666665 44454    4789999999999999     44555555                   89999999999


Q ss_pred             eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEE
Q 018622          302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI  347 (353)
Q Consensus       302 ~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i  347 (353)
                      ++||+++.||.++++..+..+++.+.++.++++..+ +.|++++++
T Consensus        79 ~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~-~~i~~~~~v  123 (155)
T cd04745          79 CTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAG-TVIPPRSLI  123 (155)
T ss_pred             CEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCC-CEeCCCCEE
Confidence            999999999999999876555555555544444433 233444443

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PLN02296 carbonate dehydratase

Probab=99.36  E-value=5.3e-12  Score=114.37  Aligned_cols=114  Identities=11%  Similarity=0.249  Sum_probs=69.6

Q ss_pred             CCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhh
Q 018622          210 KTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLL  284 (353)
Q Consensus       210 ~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~  284 (353)
                      ...+.+++.+.|++.+.+    ++.||++|.|+ ++.|.    +++||++|.|+++|+|..+..-..     .....+++
T Consensus        52 ~p~I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~-----g~~~~siI  122 (269)
T PLN02296         52 APVVDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLS-----GKVLPTII  122 (269)
T ss_pred             CCccCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCccc-----CCCCCcEe
Confidence            334555566666666544    45555555555 34443    468999999999998863210000     00001223


Q ss_pred             cCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEc
Q 018622          285 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIR  335 (353)
Q Consensus       285 ~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~  335 (353)
                      +++   +.|++++.|.+|+||++|.||.++++..+..+++.+.++.+++|.
T Consensus       123 G~~---v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~  170 (269)
T PLN02296        123 GDN---VTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVR  170 (269)
T ss_pred             CCC---CEECCCceecCCEECCCcEECCCcEECCCeEECCCCEECCCCEEe
Confidence            333   899999999999999999999999998765554444444444443

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.36  E-value=4e-12  Score=120.26  Aligned_cols=61  Identities=23%  Similarity=0.210  Sum_probs=28.6

Q ss_pred             eEeCCCeEEc-----ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCcc
Q 018622          291 IGVGRNTKIR-----NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV  352 (353)
Q Consensus       291 ~~ig~~~~i~-----~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~v  352 (353)
                      +.||+++.|.     +++||+++.|+.++.|..+..+++.+.+..++.|.++ +.||+++.|+.++.
T Consensus       210 v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~-~~iG~~~~ig~~~~  275 (343)
T PRK00892        210 VEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGS-TKIGRYCMIGGQVG  275 (343)
T ss_pred             cEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCC-CEECCceEECCCCE
Confidence            4555555553     3444444444444444444334444444443334333 33466665555543

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.36  E-value=5.6e-12  Score=93.70  Aligned_cols=65  Identities=15%  Similarity=0.456  Sum_probs=43.6

Q ss_pred             ECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCC
Q 018622          235 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD  313 (353)
Q Consensus       235 ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~  313 (353)
                      ||++|.|+ ++.+.++.|+++|.|+++|.|++++++++                   +.|++++.|.++++++++.|+++
T Consensus         2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~   62 (81)
T cd04652           2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK   62 (81)
T ss_pred             ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence            44555555 44455677777777777777777666666                   67777777777777777777777


Q ss_pred             eEEcc
Q 018622          314 VVIVN  318 (353)
Q Consensus       314 ~~i~~  318 (353)
                      +.+.+
T Consensus        63 ~~v~~   67 (81)
T cd04652          63 CKLKD   67 (81)
T ss_pred             CEEcc
Confidence            77653

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.36  E-value=5.9e-12  Score=124.49  Aligned_cols=83  Identities=14%  Similarity=0.237  Sum_probs=64.7

Q ss_pred             ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhHH-HHhhcCCCcceEeCCCeEEc-ceEeCCC
Q 018622          232 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKN  307 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~ig~~~~i~-~~iig~~  307 (353)
                      ++.||++|.|+ ++.|. ++.||++|+|+++|.|+++++++++.+++.+.+ .++++++   +.|++++.+. +++||++
T Consensus       270 ~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~---~~ig~~~~i~~~~~Ig~~  346 (481)
T PRK14358        270 TVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAG---SDVGPFARLRPGTVLGEG  346 (481)
T ss_pred             CcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCc---eEECCccEEcCCcEECCC
Confidence            45566666666 34443 478999999999999999999998888777765 3667777   7888888886 7888888


Q ss_pred             CEECCCeEEc
Q 018622          308 VKIGKDVVIV  317 (353)
Q Consensus       308 ~~Ig~~~~i~  317 (353)
                      +.|++++.+.
T Consensus       347 ~~Ig~~~~i~  356 (481)
T PRK14358        347 VHIGNFVETK  356 (481)
T ss_pred             CEECCCEEEC
Confidence            8888877764

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.35  E-value=7.6e-12  Score=108.46  Aligned_cols=103  Identities=16%  Similarity=0.296  Sum_probs=64.7

Q ss_pred             eecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCC
Q 018622          213 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG  287 (353)
Q Consensus       213 i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~  287 (353)
                      +++++.|.+.+.|.+    ++.||++|.|+ ++.|+    .++|+++|.||++|+|......           .++++++
T Consensus        13 i~~~a~I~~~a~I~g----~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~-----------~siIg~~   77 (196)
T PRK13627         13 VHPTAFVHPSAVLIG----DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDT-----------DTIVGEN   77 (196)
T ss_pred             cCCCeEECCCCEEEC----ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCC-----------CCEECCC
Confidence            334444555555433    45555555555 34443    3578888888888888654211           1222333


Q ss_pred             CcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceE
Q 018622          288 KVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFY  333 (353)
Q Consensus       288 ~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~  333 (353)
                         +.||+++.+.+|+||+++.||.++++.++..+++.+.++.+++
T Consensus        78 ---~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~  120 (196)
T PRK13627         78 ---GHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSF  120 (196)
T ss_pred             ---CEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCE
Confidence               8999999999999999999999999877644444433333333

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.35  E-value=4e-12  Score=114.77  Aligned_cols=139  Identities=13%  Similarity=0.211  Sum_probs=70.5

Q ss_pred             CCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhH-HHH
Q 018622          208 DPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESE-IAS  282 (353)
Q Consensus       208 ~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~-~~~  282 (353)
                      +|.+.|.+++.+++++.|++ +.+. ++.||++|.|+ ++.|. ++.||+++.|++++.|+....  +  +....+ ...
T Consensus         3 hp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq--~--~~~~g~~~~v   78 (255)
T PRK12461          3 HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQ--D--FTYKGEESRL   78 (255)
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCc--c--ccccCcccee
Confidence            45555555555555555543 4442 56666666666 44443 456666666666665553100  0  000000 011


Q ss_pred             hhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCe-----EEecCCcEECCCccC
Q 018622          283 LLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGMVI  353 (353)
Q Consensus       283 ~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~-----~vig~~~~i~~g~vv  353 (353)
                      .+|++   +.|++++.|. ++..+..+.||+++.+..+..+.++|.+++++.|+.++     +.||+++.|+++++|
T Consensus        79 ~IG~~---~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V  152 (255)
T PRK12461         79 EIGDR---NVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLV  152 (255)
T ss_pred             EECCc---eEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEE
Confidence            22222   6666666665 33344455566665555555555556666555554432     346777777776653

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.35  E-value=1.1e-11  Score=111.35  Aligned_cols=155  Identities=17%  Similarity=0.276  Sum_probs=101.9

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCC-cEEEEEEEeCC-C---CCCcceEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDA-DITISCAAVGE-S---RASDYGLV   88 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a-~~tll~~~~~~-~---~~~~~g~v   88 (353)
                      ....||++ ++.+...+.      .+.|++++||.  +...++.++++.|.+.+. ++++++.+.+. .   ++..+++ 
T Consensus        72 ~~~~g~~~-~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-  143 (238)
T PRK13368         72 DHLSGTDR-LAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-  143 (238)
T ss_pred             cCCCccHH-HHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-
Confidence            44567884 666666553      37899999996  567889999999876653 56666665442 1   1344554 


Q ss_pred             EECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCC-Cchhh-hhhhhh
Q 018622           89 KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS-NDFGS-EIIPAA  166 (353)
Q Consensus        89 ~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~-~~~~~-d~l~~l  166 (353)
                      .++++|+++.|.|+|.....+.+               ....+.++|+|+|++++|..+ +...... .++.. +++ .+
T Consensus       144 ~~~~~g~v~~~~~~~~~~~~~~~---------------~~~~~~n~giy~~~~~~l~~~-~~~~~~~~~~~~~~~~~-~~  206 (238)
T PRK13368        144 VVDKNGDALYFSRSPIPSRRDGE---------------SARYLKHVGIYAFRRDVLQQF-SQLPETPLEQIESLEQL-RA  206 (238)
T ss_pred             EECCCCCEEEeeCCCCCCCCCCC---------------CCceeEEEEEEEeCHHHHHHH-HcCCCChhhhhhhHHHH-HH
Confidence            44567899999876522111000               013478999999999999864 3211111 11222 455 55


Q ss_pred             hh-cCcEEEEEecceEeEcCCHHHHHHHHH
Q 018622          167 IM-EHDVQAYIFRDYWEDIGTIKSFYEANM  195 (353)
Q Consensus       167 ~~-~~~i~~~~~~g~w~dIgtp~~y~~a~~  195 (353)
                      ++ ..++.+|..+++|+|||+|++|.+|+.
T Consensus       207 ~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~  236 (238)
T PRK13368        207 LEHGEKIRMVEVAATSIGVDTPEDLERVRA  236 (238)
T ss_pred             HHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence            54 456999999999999999999999875

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.34  E-value=6e-12  Score=114.49  Aligned_cols=60  Identities=12%  Similarity=0.201  Sum_probs=28.3

Q ss_pred             CceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEEC
Q 018622          211 TPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLG  270 (353)
Q Consensus       211 ~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~~  270 (353)
                      ..|++++.|.|.+.|+. +.|. .++|+++++|+ ++.|. +++|..+++||++|.|...+.++
T Consensus         3 ~~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig   66 (262)
T PRK05289          3 AKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIG   66 (262)
T ss_pred             cccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceec
Confidence            34666666666666654 3332 23444444444 23331 34444444445555554444443

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.34  E-value=4.9e-12  Score=124.23  Aligned_cols=96  Identities=17%  Similarity=0.244  Sum_probs=61.6

Q ss_pred             CCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCCcc
Q 018622          216 SPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVP  290 (353)
Q Consensus       216 ~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~~~  290 (353)
                      .+.+++++.|.. +.|. +++||++|.|+ ++.|.+++|+++|.|+++|.|+++++..+..++....+  .+.++++   
T Consensus       261 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~---  337 (451)
T TIGR01173       261 TVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAG---  337 (451)
T ss_pred             ccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCC---
Confidence            344455555653 5554 58888899998 67888899999999999999988887777544444433  2444444   


Q ss_pred             eEeCCCeEEcceEeCCCCEECCCe
Q 018622          291 IGVGRNTKIRNCIIDKNVKIGKDV  314 (353)
Q Consensus       291 ~~ig~~~~i~~~iig~~~~Ig~~~  314 (353)
                      +.|++++.+.+++||+++.|+..+
T Consensus       338 ~~Ig~~~~i~~~~ig~~~~i~~~~  361 (451)
T TIGR01173       338 VHIGNFVETKNARIGKGSKAGHLS  361 (451)
T ss_pred             cEEccceeecCcEECCCcEeccee
Confidence            455555555555555554444433

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.34  E-value=6.1e-12  Score=110.42  Aligned_cols=52  Identities=19%  Similarity=0.100  Sum_probs=28.1

Q ss_pred             ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          301 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       301 ~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      ++.+++++.|+.++.+.+...+++.++++.++.|..+ +.||+++.|+++++|
T Consensus       132 ~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~-~~ig~~~~i~~~s~v  183 (205)
T cd03352         132 NVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGH-LTIGDGVVIGAGSGV  183 (205)
T ss_pred             CCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCC-cEECCCCEEcCCCEE
Confidence            3444444444444444444445555555555555554 345777777777754

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=99.33  E-value=3e-12  Score=113.39  Aligned_cols=119  Identities=15%  Similarity=0.222  Sum_probs=92.6

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHH--HHHCCCcEEEEEEEeCCCC-------CCcce
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS--HVDRDADITISCAAVGESR-------ASDYG   86 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~--h~~~~a~~tll~~~~~~~~-------~~~~g   86 (353)
                      ....|||++++++++++.       ++|+|++||+++++|+.+++++  +..+++++|+.+...++..       ...++
T Consensus        86 ~~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
T cd02507          86 CESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEED  158 (216)
T ss_pred             CCCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCc
Confidence            457899999999999885       7899999999999999999975  5556667776666544321       45689


Q ss_pred             EEEECCC---CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHH
Q 018622           87 LVKIDNM---GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL  144 (353)
Q Consensus        87 ~v~~d~~---g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl  144 (353)
                      ++.+|++   .+++.+.|++....  .+.+..+++..+|. +..++++.++|+|+|++++|
T Consensus       159 ~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl  216 (216)
T cd02507         159 VIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL  216 (216)
T ss_pred             EEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence            9999987   57888888876542  34456777777775 45688999999999999874

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PLN02472 uncharacterized protein

Probab=99.31  E-value=1.1e-11  Score=110.75  Aligned_cols=122  Identities=14%  Similarity=0.211  Sum_probs=72.2

Q ss_pred             ceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcC
Q 018622          212 PFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAE  286 (353)
Q Consensus       212 ~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~  286 (353)
                      .+..++.+.|++.+.+    ++.||++|.|+ +++++    ..+||+++.|+++|+|.....-..     .....+++++
T Consensus        61 ~i~~~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~-----~i~~~tvIG~  131 (246)
T PLN02472         61 KVAVDAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPT-----GLPAETLIDR  131 (246)
T ss_pred             ccCCCCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCcccc-----CCCCCcEECC
Confidence            3455555666665544    45555555555 33332    368999999999999953110000     0000112222


Q ss_pred             CCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCcc
Q 018622          287 GKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV  352 (353)
Q Consensus       287 ~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~v  352 (353)
                      +   +.||+++.|.+|+|++++.||.++++..+..      |++++.|+.+ +++.++..|++|++
T Consensus       132 ~---v~IG~~s~L~~~~Igd~v~IG~~svI~~gav------Ig~~~~Ig~g-svV~~g~~Ip~g~~  187 (246)
T PLN02472        132 Y---VTIGAYSLLRSCTIEPECIIGQHSILMEGSL------VETHSILEAG-SVLPPGRRIPTGEL  187 (246)
T ss_pred             C---CEECCCcEECCeEEcCCCEECCCCEECCCCE------ECCCCEECCC-CEECCCCEeCCCCE
Confidence            2   8999999999999999999999999887643      4444444444 23355555555543

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.31  E-value=1e-11  Score=108.61  Aligned_cols=34  Identities=6%  Similarity=0.069  Sum_probs=15.1

Q ss_pred             ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEec
Q 018622          232 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD  265 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~  265 (353)
                      ++.||++|.|+ ++.+.+++||+++.|++++.|.+
T Consensus        19 ~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~   53 (204)
T TIGR03308        19 ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIY   53 (204)
T ss_pred             ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEee
Confidence            34444444444 34444444444444444444443

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.30  E-value=2.8e-11  Score=102.37  Aligned_cols=109  Identities=17%  Similarity=0.257  Sum_probs=76.9

Q ss_pred             cCCCCceecCCCC------CCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccch
Q 018622          207 YDPKTPFYTSPRF------LPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE  277 (353)
Q Consensus       207 ~~~~~~i~~~~~i------~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~  277 (353)
                      ++++..+.+++.+      ++++.|+. +.++ +++|+++|.|+ ++.+.+|+|++++.|+.++.++++++.++      
T Consensus        20 ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~------   93 (163)
T cd05636          20 IGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN------   93 (163)
T ss_pred             EcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC------
Confidence            3444444444444      44444432 5555 58999999999 68899999999999999999999988777      


Q ss_pred             hHHHHhhcCCCcceEeCCCeEEc-------------------------ceEeCCCCEECCCeEEccCCCcccccCCCCce
Q 018622          278 SEIASLLAEGKVPIGVGRNTKIR-------------------------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGF  332 (353)
Q Consensus       278 ~~~~~~~~~~~~~~~ig~~~~i~-------------------------~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~  332 (353)
                                   +.|++++.+.                         +++|++++.||.++.+..+            +
T Consensus        94 -------------~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g------------~  148 (163)
T cd05636          94 -------------VNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG------------V  148 (163)
T ss_pred             -------------CEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC------------c
Confidence                         7788887773                         4677777777777777655            4


Q ss_pred             EEccCeEEecCCcEE
Q 018622          333 YIRSGITIIMEKATI  347 (353)
Q Consensus       333 ~i~~~~~vig~~~~i  347 (353)
                      .|+.+ +.|+++++|
T Consensus       149 ~ig~~-~~i~agsvV  162 (163)
T cd05636         149 KIGPG-SWVYPGCVV  162 (163)
T ss_pred             EECCC-CEECCCcEe
Confidence            45454 344666554

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.29  E-value=1.5e-11  Score=121.03  Aligned_cols=81  Identities=17%  Similarity=0.389  Sum_probs=54.9

Q ss_pred             CCCCCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEe
Q 018622          217 PRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV  293 (353)
Q Consensus       217 ~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i  293 (353)
                      +.+++++.|.+ +.+. ++.||++|.|+ ++.|.+|+||++|.|+++|.|+++++.++                   +.|
T Consensus       270 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~~I  330 (456)
T PRK14356        270 ATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG-------------------CSV  330 (456)
T ss_pred             cEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc-------------------cEE
Confidence            34444444433 4442 58899999998 78888999999999999999988888877                   455


Q ss_pred             CCCeEEc-ceEeCCCCEECCCeEE
Q 018622          294 GRNTKIR-NCIIDKNVKIGKDVVI  316 (353)
Q Consensus       294 g~~~~i~-~~iig~~~~Ig~~~~i  316 (353)
                      |+++.|. +++||+++.||.++.+
T Consensus       331 g~~~~i~~~~~ig~~~~ig~~~~i  354 (456)
T PRK14356        331 GPYARLRPGAVLEEGARVGNFVEM  354 (456)
T ss_pred             CCceEECCCCEECCCCEecCCcee
Confidence            5555554 4555555555554433

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.29  E-value=3.4e-11  Score=108.81  Aligned_cols=166  Identities=17%  Similarity=0.291  Sum_probs=113.3

Q ss_pred             eeecCcccCCCCCCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecC--HHHHHHH---HHHCCCcEEEEEEE
Q 018622            2 FVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQS---HVDRDADITISCAA   76 (353)
Q Consensus         2 ~~~~~~~~~~~~~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~d--l~~~~~~---h~~~~a~~tll~~~   76 (353)
                      |+++|.++          .||.|+..+.-.+..  ..++.-++|+.+|++..-.  |.+.++.   ..+++..+|+...|
T Consensus        80 illEP~gR----------nTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~P  147 (333)
T COG0836          80 IILEPEGR----------NTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPP  147 (333)
T ss_pred             eEeccCCC----------CcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence            56666666          399999888776653  2334568999999987543  6555554   33466777777776


Q ss_pred             eCCCCCCcceEEEECCC------CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHh
Q 018622           77 VGESRASDYGLVKIDNM------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW  150 (353)
Q Consensus        77 ~~~~~~~~~g~v~~d~~------g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~  150 (353)
                      ..+  .+.||++...+.      -+|.+|.|||+..+++++.             ..+.++||+|+|+|+..++...+++
T Consensus       148 t~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~l~e~~~  212 (333)
T COG0836         148 TRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVFLEELKK  212 (333)
T ss_pred             CCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHHHHHHHh
Confidence            655  579999997542      2799999999987765432             2246899999999999977656665


Q ss_pred             hCCCC-------------Cchh---hhhhhh--------h-h-hcCcEEEEEecceEeEcCCHHHHHHHH
Q 018622          151 RYPTS-------------NDFG---SEIIPA--------A-I-MEHDVQAYIFRDYWEDIGTIKSFYEAN  194 (353)
Q Consensus       151 ~~~~~-------------~~~~---~d~l~~--------l-~-~~~~i~~~~~~g~w~dIgtp~~y~~a~  194 (353)
                      ..|..             .++.   .+.+..        . + +..++.+.+.+..|.|+|++.++++..
T Consensus       213 ~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~  282 (333)
T COG0836         213 HQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL  282 (333)
T ss_pred             hCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence            54321             0000   111111        1 1 227889999999999999999998644

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.29  E-value=2.3e-11  Score=90.39  Aligned_cols=77  Identities=13%  Similarity=0.404  Sum_probs=68.2

Q ss_pred             CCCCeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCC
Q 018622          219 FLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN  296 (353)
Q Consensus       219 i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~  296 (353)
                      +++++.|+. +.+.++.|+++|.|+ ++.+.+++|++++.|+.+|.|.++++.++                   +.|+++
T Consensus         2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~   62 (81)
T cd04652           2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK   62 (81)
T ss_pred             ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence            455666653 667789999999998 68899999999999999999999999988                   899999


Q ss_pred             eEEcceEeCCCCEECCCe
Q 018622          297 TKIRNCIIDKNVKIGKDV  314 (353)
Q Consensus       297 ~~i~~~iig~~~~Ig~~~  314 (353)
                      +.+.+|++++++.|++++
T Consensus        63 ~~v~~~ii~~~~~i~~~~   80 (81)
T cd04652          63 CKLKDCLVGSGYRVEAGT   80 (81)
T ss_pred             CEEccCEECCCcEeCCCC
Confidence            999999999999999875

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.29  E-value=4.1e-11  Score=101.72  Aligned_cols=116  Identities=21%  Similarity=0.320  Sum_probs=72.7

Q ss_pred             eecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe-----eeEEcCCcEECCCCEEec----eEEECCccccchhHHHH
Q 018622          213 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKD----TVMLGADYYQTESEIAS  282 (353)
Q Consensus       213 i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~-----~~~ig~~~~ig~~~~i~~----~v~~~~~~~~~~~~~~~  282 (353)
                      +.+++.|.|.+.|.+    ++.||++|+|+ ++.|.     ++.||++|.|++++.|..    .+.++.+          
T Consensus         5 ig~~~~I~~~a~i~~----~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~----------   70 (167)
T cd00710           5 IDPSAYVHPTAVVIG----DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKN----------   70 (167)
T ss_pred             eCCCeEECCCCEEEe----eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCC----------
Confidence            334444444444433    34444444444 23332     467888888888888742    3444443          


Q ss_pred             hhcCCCcceEeCCCeEEcc-eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          283 LLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       283 ~~~~~~~~~~ig~~~~i~~-~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                              +.|++++.|.+ ++||+++.||.++.+.+ ..+++.+.++.++.|. + ..|++++.+++++++
T Consensus        71 --------~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~v  131 (167)
T cd00710          71 --------VSIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAVI  131 (167)
T ss_pred             --------ceECCCCEEeCCEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCEE
Confidence                    77788888774 88888888888888763 4566777777777774 3 356888888877753

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.29  E-value=2.6e-11  Score=89.51  Aligned_cols=66  Identities=26%  Similarity=0.572  Sum_probs=53.4

Q ss_pred             ECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCC
Q 018622          235 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD  313 (353)
Q Consensus       235 ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~  313 (353)
                      |+++|.|+ ++.+.+++||++|+|++++.|++++++++                   ++|++++.|.+++|++++.|+++
T Consensus         2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~   62 (79)
T cd03356           2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN   62 (79)
T ss_pred             ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence            56666666 56666788899999998899988888877                   78888888888888888888888


Q ss_pred             eEEccC
Q 018622          314 VVIVNK  319 (353)
Q Consensus       314 ~~i~~~  319 (353)
                      +.+.++
T Consensus        63 ~~i~~~   68 (79)
T cd03356          63 VRVVNL   68 (79)
T ss_pred             CEEcCC
Confidence            887653

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.26  E-value=6.2e-11  Score=99.14  Aligned_cols=88  Identities=15%  Similarity=0.280  Sum_probs=61.1

Q ss_pred             ceEECCCcEEC-ceEEee----eEEcCCcEECCCCEEece----EEECCccccchhHHHHhhcCCCcceEeCCCeEEcce
Q 018622          232 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC  302 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~~----~~ig~~~~ig~~~~i~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~  302 (353)
                      ++.||++|.|+ ++.|..    .+||++|.|+++|.|...    ++++++                  +.|++++.+.++
T Consensus        18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~   79 (154)
T cd04650          18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY------------------VTIGHNAVVHGA   79 (154)
T ss_pred             eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC------------------CEECCCcEEECc
Confidence            45666666666 454543    588999999999988863    333332                  788888888889


Q ss_pred             EeCCCCEECCCeEEccCCCcccccCCCCceEEccC
Q 018622          303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG  337 (353)
Q Consensus       303 iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~  337 (353)
                      +||+++.|+.++.+.++..+++.+.++.++.+..+
T Consensus        80 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g  114 (154)
T cd04650          80 KVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPG  114 (154)
T ss_pred             EECCCCEEcCCCEEeCCCEECCCCEECCCCEECCC
Confidence            99999999999888776555555555554444443

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.26  E-value=7.5e-11  Score=98.63  Aligned_cols=97  Identities=20%  Similarity=0.398  Sum_probs=64.9

Q ss_pred             ceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEece----EEECCccccchhHHHHhhcCCCcceEeCCCeEEcce
Q 018622          232 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC  302 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~  302 (353)
                      ++.||++|.|+ ++.|.    .++||++|.|+++|.|.++    .+++++                  +.|+.++.+.++
T Consensus        17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~   78 (153)
T cd04645          17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN------------------VTVGHGAVLHGC   78 (153)
T ss_pred             eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC------------------cEECCCcEEeee
Confidence            45566666666 44443    4689999999999999885    333333                  789999999999


Q ss_pred             EeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEE
Q 018622          303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI  347 (353)
Q Consensus       303 iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i  347 (353)
                      +|++++.|++++.+..+..+++.+.++.++.+..+ +.|+.++++
T Consensus        79 ~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~-~~i~~~~~~  122 (153)
T cd04645          79 TIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPG-KVIPPGSLV  122 (153)
T ss_pred             EECCCCEECCCCEEcCCCEECCCCEECCCCEECCC-CEeCCCCEE
Confidence            99999999999888766555555555544444433 223444444

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.26  E-value=2.4e-11  Score=119.33  Aligned_cols=64  Identities=22%  Similarity=0.385  Sum_probs=36.8

Q ss_pred             ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCE
Q 018622          232 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK  309 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~  309 (353)
                      ++.||++|+|+ ++.|.+|+||++|.|. .+.+.++++.++                   +.|++++.|. +++||+++.
T Consensus       273 ~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~-------------------~~ig~~~~i~~~~~ig~~~~  332 (448)
T PRK14357        273 KTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDD-------------------VSVGPFSRLREGTVLKKSVK  332 (448)
T ss_pred             eeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCC-------------------cEECCCcEECCcccccCCcE
Confidence            46666666666 4566666666666664 345566666665                   4555555553 355555555


Q ss_pred             ECCCeE
Q 018622          310 IGKDVV  315 (353)
Q Consensus       310 Ig~~~~  315 (353)
                      ||+++.
T Consensus       333 Ig~~~~  338 (448)
T PRK14357        333 IGNFVE  338 (448)
T ss_pred             ecCcee
Confidence            555443

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.25  E-value=2.2e-11  Score=119.80  Aligned_cols=95  Identities=17%  Similarity=0.248  Sum_probs=61.2

Q ss_pred             CCCCCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCCcce
Q 018622          217 PRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPI  291 (353)
Q Consensus       217 ~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~~~~  291 (353)
                      +.+++++.|+. +.|. +++||++|.|+ ++.|.+|+|+++|.|+++|.|+++++.++..++..+.+  .+.++++   +
T Consensus       266 ~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~---~  342 (456)
T PRK09451        266 LTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEG---A  342 (456)
T ss_pred             EEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCC---c
Confidence            34556666653 6665 58899999998 78888999999999999999998877777444443332  2333333   4


Q ss_pred             EeCCCeEEcceEeCCCCEECCCe
Q 018622          292 GVGRNTKIRNCIIDKNVKIGKDV  314 (353)
Q Consensus       292 ~ig~~~~i~~~iig~~~~Ig~~~  314 (353)
                      .||+++.|++++|++++.++..+
T Consensus       343 ~ig~~~~i~~~~i~~~~~~~~~~  365 (456)
T PRK09451        343 HVGNFVEMKKARLGKGSKAGHLT  365 (456)
T ss_pred             eeccceeeeceeeCCCCccCccc
Confidence            44444444444444444444433

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.25  E-value=4.6e-11  Score=88.10  Aligned_cols=66  Identities=18%  Similarity=0.383  Sum_probs=55.1

Q ss_pred             ECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCC
Q 018622          235 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD  313 (353)
Q Consensus       235 ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~  313 (353)
                      ||++|.|+ ++.+.+++|+++|.|++++.|.+++++++                   ++|++++.|.+++|++++.|+++
T Consensus         2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~   62 (79)
T cd05787           2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG   62 (79)
T ss_pred             ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence            56666666 45666789999999999999999888887                   89999999999999999999988


Q ss_pred             eEEccC
Q 018622          314 VVIVNK  319 (353)
Q Consensus       314 ~~i~~~  319 (353)
                      +.+..+
T Consensus        63 ~~i~~~   68 (79)
T cd05787          63 CTIPPG   68 (79)
T ss_pred             CEECCC
Confidence            888654

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.25  E-value=4.8e-11  Score=104.74  Aligned_cols=56  Identities=18%  Similarity=0.318  Sum_probs=27.0

Q ss_pred             CCCCceecCCCCCCCeEEec-eee-eceEECCCcEEC-ceEEee-eEEcCCcEECCCCEE
Q 018622          208 DPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVEH-SIVGERSRLDYGVEL  263 (353)
Q Consensus       208 ~~~~~i~~~~~i~~~~~i~~-~~i-~~~~ig~~~~i~-~~~v~~-~~ig~~~~ig~~~~i  263 (353)
                      ++...+.+++.|+++++|.. +.+ .++.||++|.|+ ++.+.+ +.|+++|.|+++++|
T Consensus        11 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i   70 (205)
T cd03352          11 GPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI   70 (205)
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence            34444444444555555543 444 255566666665 333332 455555555555444

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.24  E-value=1.1e-11  Score=109.52  Aligned_cols=119  Identities=21%  Similarity=0.312  Sum_probs=93.5

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCC-----------CCc
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESR-----------ASD   84 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~-----------~~~   84 (353)
                      ...+|||++|+.+.+.+.       ++|+|++||.+++.++.++++.|+++++.+|+++++.+...           ...
T Consensus        84 ~~~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~  156 (214)
T cd04198          84 DEDMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADE  156 (214)
T ss_pred             CCCcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCC
Confidence            567899999999998875       68999999999999999999999999999999998754211           235


Q ss_pred             ceEEEECCC-CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHH
Q 018622           85 YGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL  144 (353)
Q Consensus        85 ~g~v~~d~~-g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl  144 (353)
                      +.++.+|++ ++++.+.+..+.+  ..+.++.+++..+|. +.++++|.++++|+|++++|
T Consensus       157 ~~~~~~d~~~~~ll~~~~~~~~~--~~~~~~~~~l~~~~~-~~i~~~l~D~hiyi~~~~v~  214 (214)
T cd04198         157 RDVIGLDEKTQRLLFITSEEDLD--EDLELRKSLLKRHPR-VTITTKLLDAHVYIFKRWVL  214 (214)
T ss_pred             CceEEEcCCCCEEEEECCHHHhh--hhhhHHHHHHHhCCC-EEEEcCcccceEEEEEeeeC
Confidence            677777764 6888776543322  244557778887775 35688999999999999874

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.24  E-value=3.6e-11  Score=108.47  Aligned_cols=107  Identities=12%  Similarity=0.209  Sum_probs=47.1

Q ss_pred             CCCceecCCCCCCCeEEec-eeeeceEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhc
Q 018622          209 PKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLA  285 (353)
Q Consensus       209 ~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~  285 (353)
                      +...+.+.+.+.++++|+. +.+.++.|+.++.|+ ++.| .++.||++|.||++|.|..++.+++.. .+.....++++
T Consensus       102 ~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~-~~~~~~~viIg  180 (272)
T PRK11830        102 AGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL-EPLQANPVIIE  180 (272)
T ss_pred             CCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCc-cccCcCCeEEc
Confidence            3344444444444444442 333333333333333 2222 235555555555555555555554311 00000123333


Q ss_pred             CCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          286 EGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       286 ~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                      ++   +.||.++.|. +++||+++.||+++.+..+
T Consensus       181 Dn---v~IGa~s~I~~Gv~IGdgavIgag~vV~~g  212 (272)
T PRK11830        181 DN---CFIGARSEVVEGVIVEEGSVLGMGVFLGQS  212 (272)
T ss_pred             CC---CEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence            33   4555555552 5555555555555555544

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.22  E-value=4.8e-11  Score=118.22  Aligned_cols=57  Identities=11%  Similarity=0.096  Sum_probs=37.1

Q ss_pred             cCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCc
Q 018622          215 TSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGAD  272 (353)
Q Consensus       215 ~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~  272 (353)
                      +.+.+++++.|.. +.|. ++.||++|.|+ ++.|.+++||++|.|+. +.+.++++.++.
T Consensus       270 ~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~  329 (482)
T PRK14352        270 VDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGA  329 (482)
T ss_pred             CCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCC
Confidence            3444555555543 4443 57788888887 67777788888887764 666666666663

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.19  E-value=1e-10  Score=114.20  Aligned_cols=162  Identities=19%  Similarity=0.272  Sum_probs=108.0

Q ss_pred             ccccccHHHHHHHHHHhhhhccCC--CCeEEEEeCCeEEecC--HHHHHHHH---HHCCCcEEEEEEEeCCCCCCcceEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRN--IENVAILCGDHLYRMD--YMDFIQSH---VDRDADITISCAAVGESRASDYGLV   88 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~--~~~flV~~gD~i~~~d--l~~~~~~h---~~~~a~~tll~~~~~~~~~~~~g~v   88 (353)
                      +..++||.|+..|..++.+  ...  ++.++|+++|++..-.  |.+.++..   .+++..+|+...+..+  .+.||++
T Consensus        86 P~~rnTApaialaa~~~~~--~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~P--eTgyGYI  161 (478)
T PRK15460         86 PAGRNTAPAIALAALAAKR--HSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLP--ETGYGYI  161 (478)
T ss_pred             CCCCChHHHHHHHHHHHHH--hcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCC--CCCCCeE
Confidence            3345799999888877753  222  4568999999987432  54444432   2346667777766555  5789999


Q ss_pred             EECCC---------CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCC---
Q 018622           89 KIDNM---------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN---  156 (353)
Q Consensus        89 ~~d~~---------g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~---  156 (353)
                      ..++.         -+|.+|.|||+..+++++             ++.+.++||+|||+|+.+.|...+++..|...   
T Consensus       162 ~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~y-------------l~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~  228 (478)
T PRK15460        162 RRGEVSAGEQDTVAFEVAQFVEKPNLETAQAY-------------VASGEYYWNSGMFLFRAGRYLEELKKYRPDILDAC  228 (478)
T ss_pred             EeCCccccccccCceEeeEEEeCCCHHHHHHH-------------HHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHH
Confidence            98642         269999999998776543             12245799999999999977666655443100   


Q ss_pred             -----------ch--h-hhhhhhh---------hh-cCcEEEEEecceEeEcCCHHHHHHHH
Q 018622          157 -----------DF--G-SEIIPAA---------IM-EHDVQAYIFRDYWEDIGTIKSFYEAN  194 (353)
Q Consensus       157 -----------~~--~-~d~l~~l---------~~-~~~i~~~~~~g~w~dIgtp~~y~~a~  194 (353)
                                 ++  . .+.++.+         ++ ..++.+.+.+..|.|+|++.++++..
T Consensus       229 ~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~  290 (478)
T PRK15460        229 EKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS  290 (478)
T ss_pred             HHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence                       00  0 2223222         11 25688889999999999999998754

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.19  E-value=1.3e-10  Score=95.51  Aligned_cols=29  Identities=21%  Similarity=0.410  Sum_probs=14.2

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                      +.|++++.|. ++.||+++.|++++++..+
T Consensus        82 ~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~  111 (139)
T cd03350          82 VFIGANCEVVEGVIVGKGAVLAAGVVLTQS  111 (139)
T ss_pred             CEECCCCEECCCCEECCCCEEcCCCEEcCC
Confidence            4455554443 4455555555555554444

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.19  E-value=2.5e-10  Score=98.71  Aligned_cols=61  Identities=16%  Similarity=0.094  Sum_probs=39.9

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeE-----EecCCcEECCCc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGM  351 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----vig~~~~i~~g~  351 (353)
                      |.||.+..+. ++-|.++|.||.+|++.|+..+..-..+++.++|++...     .||+.+.||..|
T Consensus       107 T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S  173 (260)
T COG1043         107 TRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLS  173 (260)
T ss_pred             EEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheecccc
Confidence            5666666665 566677777777777777766666666666666655432     367777776654

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.18  E-value=1.2e-10  Score=104.13  Aligned_cols=129  Identities=12%  Similarity=0.192  Sum_probs=61.7

Q ss_pred             CCCceecCCCCCCCeEEeceeee-ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCC
Q 018622          209 PKTPFYTSPRFLPPTKIDNCRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG  287 (353)
Q Consensus       209 ~~~~i~~~~~i~~~~~i~~~~i~-~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~  287 (353)
                      |.+.+..++.+++++.|..+.+. ++.||++|.|.    .+++||++|+||++|.|..++.+++. ..+....+++++++
T Consensus       105 p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~----~~a~IG~~v~IG~nv~I~~g~~IgG~-~ep~~~~~ViIgDn  179 (269)
T TIGR00965       105 PGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVD----TWATVGSCAQIGKNVHLSGGVGIGGV-LEPLQANPTIIEDN  179 (269)
T ss_pred             CCcEECCCcEECCCCEEeeeEEcCCcEECCCCEEC----CCcEECCCCEECCCCEEcCCcccCCC-cccCCCCCeEECCC
Confidence            34444444445555554432221 35566666665    23566666666666666655555431 11111112333334


Q ss_pred             CcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCc
Q 018622          288 KVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM  351 (353)
Q Consensus       288 ~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~  351 (353)
                         |.||+++.|. +++||+++.||++++|..+..+.+.. .+  .++.   ..|++++++-||+
T Consensus       180 ---v~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~-~g--~v~~---~~vp~~svv~~g~  235 (269)
T TIGR00965       180 ---CFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRE-TG--EIHY---GRVPAGSVVVSGN  235 (269)
T ss_pred             ---CEECCCCEEcCCCEECCCCEEeCCCEECCCCEEeccc-CC--ceee---eecCCCcEEecCC
Confidence               5566665554 55666666666666665544333321 11  1111   1357777776654

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.16  E-value=4.3e-10  Score=94.24  Aligned_cols=95  Identities=15%  Similarity=0.278  Sum_probs=72.0

Q ss_pred             ccCCCCceecCCCCCCCeEEec-eeee----ceEECCCcEEC-ceEE-----eeeEEcCCcEECCCCEEeceEEECCccc
Q 018622          206 FYDPKTPFYTSPRFLPPTKIDN-CRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYY  274 (353)
Q Consensus       206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~----~~~ig~~~~i~-~~~v-----~~~~ig~~~~ig~~~~i~~~v~~~~~~~  274 (353)
                      ++++++.+...+.++++++|+. +.+.    .+.||++|.|+ ++.|     .+++|+++|.|+.++++.++.+.++   
T Consensus         8 ~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~---   84 (155)
T cd04745           8 FVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN---   84 (155)
T ss_pred             EECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC---
Confidence            3455666666677777777753 6665    37888888888 5777     4688999999999988888766655   


Q ss_pred             cchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          275 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                                      +.|+.++.|. +++|++++.|++++.+..+
T Consensus        85 ----------------~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~  114 (155)
T cd04745          85 ----------------ALVGMNAVVMDGAVIGEESIVGAMAFVKAG  114 (155)
T ss_pred             ----------------CEECCCCEEeCCCEECCCCEECCCCEeCCC
Confidence                            7888888887 5888888888888887654

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=5.3e-11  Score=115.31  Aligned_cols=90  Identities=12%  Similarity=0.313  Sum_probs=77.8

Q ss_pred             CceecCCCCCCCeEEe-ceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCC
Q 018622          211 TPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK  288 (353)
Q Consensus       211 ~~i~~~~~i~~~~~i~-~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~  288 (353)
                      ..+..++.|+.++.|+ ++.|.||+||+||.|| ++.|.+|.||.+|+||+||+|++++++++                 
T Consensus       328 ~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~-----------------  390 (673)
T KOG1461|consen  328 VIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD-----------------  390 (673)
T ss_pred             ccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC-----------------
Confidence            3444555667777776 4888999999999999 89999999999999999999999999998                 


Q ss_pred             cceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          289 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       289 ~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                        +.|+.++++. +|+||.++.+|++-++--+
T Consensus       391 --v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n  420 (673)
T KOG1461|consen  391 --VKIGEGAILKPGSVLGFGVVVGRNFVLPKN  420 (673)
T ss_pred             --cEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence              8999999996 8999999999998777654

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.16  E-value=1e-10  Score=101.05  Aligned_cols=62  Identities=19%  Similarity=0.185  Sum_probs=41.7

Q ss_pred             ceEeCCCeEEc-ceEe------C-CCCEECCCeEEccCCCcccccCCCCceEEccCeEE-----ecCCcEECCCc
Q 018622          290 PIGVGRNTKIR-NCII------D-KNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-----IMEKATIEDGM  351 (353)
Q Consensus       290 ~~~ig~~~~i~-~~ii------g-~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~v-----ig~~~~i~~g~  351 (353)
                      .+.||+++.|+ .+.|      | .-+.||++..+.-+..+..+|+||+.+++..++++     ||+.++||-.+
T Consensus        81 ~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s  155 (260)
T COG1043          81 RLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS  155 (260)
T ss_pred             EEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence            46777777776 3333      2 34567777777777778888888888888777553     66666666543

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.16  E-value=1.8e-10  Score=113.05  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=45.4

Q ss_pred             eEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCccccc
Q 018622          249 SIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEAD  326 (353)
Q Consensus       249 ~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~  326 (353)
                      +.||++|.|+.++.|.++++.++..+++++.+  .++++++   +.||+++.+.+++|++++.++..+.+.+ ..+++.+
T Consensus       287 ~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~---~~Ig~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~  362 (446)
T PRK14353        287 VTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEG---AKVGNFVEVKNAKLGEGAKVNHLTYIGD-ATIGAGA  362 (446)
T ss_pred             CEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCC---eEEcCceEEeceEECCCCEECCeeEEcC-cEEcCCc
Confidence            34444444444444444443333334333333  3677777   8999999999888888877666655533 2344444


Q ss_pred             CCCCce
Q 018622          327 RPELGF  332 (353)
Q Consensus       327 ~~~~~~  332 (353)
                      .++.++
T Consensus       363 ~Ig~~~  368 (446)
T PRK14353        363 NIGAGT  368 (446)
T ss_pred             EECCce
Confidence            444443

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.15  E-value=2.6e-10  Score=84.47  Aligned_cols=64  Identities=20%  Similarity=0.312  Sum_probs=51.5

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECC
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK  312 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~  312 (353)
                      +.|++++.|+    .+++|+++|+||++|.|++++++++                   +.|++++.|.++++++++.|++
T Consensus         6 ~~I~~~~~i~----~~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~   62 (80)
T cd05824           6 AKIGKTAKIG----PNVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR   62 (80)
T ss_pred             CEECCCCEEC----CCCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence            4555555555    3578888999999999999888887                   7899999999999999999999


Q ss_pred             CeEEccC
Q 018622          313 DVVIVNK  319 (353)
Q Consensus       313 ~~~i~~~  319 (353)
                      ++.+.++
T Consensus        63 ~~~~~~~   69 (80)
T cd05824          63 WTRLENV   69 (80)
T ss_pred             CcEEecC
Confidence            8887653

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.15  E-value=2.8e-10  Score=88.73  Aligned_cols=61  Identities=26%  Similarity=0.451  Sum_probs=53.0

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECC
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK  312 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~  312 (353)
                      +.|+++|.     |.+|+||++|.|+ ++.|.+++++++                   ++|++++.|.+|+|++++.||+
T Consensus         2 ~~i~~~~~-----i~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~   56 (104)
T cd04651           2 PYIGRRGE-----VKNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGR   56 (104)
T ss_pred             ceecCCCE-----EEeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECC
Confidence            34555554     4579999999999 999999999988                   8999999999999999999999


Q ss_pred             CeEEcc
Q 018622          313 DVVIVN  318 (353)
Q Consensus       313 ~~~i~~  318 (353)
                      ++.+.+
T Consensus        57 ~~~i~~   62 (104)
T cd04651          57 NAVIRR   62 (104)
T ss_pred             CCEEEe
Confidence            999964

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.15  E-value=2.9e-10  Score=83.86  Aligned_cols=75  Identities=23%  Similarity=0.373  Sum_probs=64.6

Q ss_pred             CCCCeEEe-ceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCC
Q 018622          219 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN  296 (353)
Q Consensus       219 i~~~~~i~-~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~  296 (353)
                      +++++.|. ++.+.++.|+++|.|+ ++.+.+++|+++++|+++|.|.+++++++                   +.|+++
T Consensus         2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~   62 (79)
T cd03356           2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN   62 (79)
T ss_pred             ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence            45666775 3777789999999998 78899999999999999999999998877                   899999


Q ss_pred             eEEcc-eEeCCCCEECC
Q 018622          297 TKIRN-CIIDKNVKIGK  312 (353)
Q Consensus       297 ~~i~~-~iig~~~~Ig~  312 (353)
                      +.+.+ +++++++.|++
T Consensus        63 ~~i~~~~~ig~~~~i~~   79 (79)
T cd03356          63 VRVVNLCIIGDDVVVED   79 (79)
T ss_pred             CEEcCCeEECCCeEECc
Confidence            99986 88888888764

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.15  E-value=1.5e-10  Score=113.92  Aligned_cols=79  Identities=13%  Similarity=0.293  Sum_probs=39.9

Q ss_pred             ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCCcceEeCCCeEEcceEeCCCC
Q 018622          232 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIGVGRNTKIRNCIIDKNV  308 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~~i~~~iig~~~  308 (353)
                      ++.||++|.|+ ++.|.+++||++|.|+. +.+.++++..+..++..+.+  .+.++++   ++|++++.|.+++|++++
T Consensus       283 ~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~---~~i~~~~~i~~~~i~~~~  358 (458)
T PRK14354        283 NTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVIEESKVGDNVTVGPFAHLRPGSVIGEE---VKIGNFVEIKKSTIGEGT  358 (458)
T ss_pred             ceEECCCCEECCCcEEeccEECCCCEEEE-EEEeCCEECCCcEECCceEecCCCEEeCC---cEECCceEEeeeEECCCC
Confidence            46667777776 56666677777777763 55556655555333332222  1333333   344444444444444444


Q ss_pred             EECCCe
Q 018622          309 KIGKDV  314 (353)
Q Consensus       309 ~Ig~~~  314 (353)
                      .++..+
T Consensus       359 ~i~~~~  364 (458)
T PRK14354        359 KVSHLT  364 (458)
T ss_pred             Eeccee
Confidence            444333

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.14  E-value=4.7e-10  Score=98.09  Aligned_cols=58  Identities=12%  Similarity=0.319  Sum_probs=37.0

Q ss_pred             cCCCCceecCCCCCCCeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEec
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD  265 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~  265 (353)
                      +++.+.+. .+.+++++.|+. +.+.++.||++|.|+ ++.+.++.||++|.|++++.|..
T Consensus        11 I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~   70 (204)
T TIGR03308        11 LHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA   70 (204)
T ss_pred             ECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence            34444443 345666666654 666667777777777 56666777777777777777664

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.13  E-value=2.6e-10  Score=112.09  Aligned_cols=65  Identities=25%  Similarity=0.423  Sum_probs=40.0

Q ss_pred             ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCE
Q 018622          232 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK  309 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~  309 (353)
                      ++.||++|.|+ ++.|.+|+|+++|+|+ ++.+.++++.++                   +.|++++.|. +++||++|.
T Consensus       280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~-------------------~~I~~~~~I~~~~~Ig~~~~  339 (450)
T PRK14360        280 NTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDG-------------------VKIGPYAHLRPEAQIGSNCR  339 (450)
T ss_pred             CcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCC-------------------cEECCCCEECCCCEEeCceE
Confidence            46677777776 5666677777777764 345555555554                   5666666665 466666666


Q ss_pred             ECCCeEE
Q 018622          310 IGKDVVI  316 (353)
Q Consensus       310 Ig~~~~i  316 (353)
                      ||+++.+
T Consensus       340 Ig~~~~i  346 (450)
T PRK14360        340 IGNFVEI  346 (450)
T ss_pred             ECCCEEE
Confidence            6665554

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.13  E-value=7.8e-10  Score=96.29  Aligned_cols=21  Identities=24%  Similarity=0.022  Sum_probs=12.2

Q ss_pred             ceEeEcCCHHHHHHHHHhhcc
Q 018622          179 DYWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       179 g~w~dIgtp~~y~~a~~~ll~  199 (353)
                      ..+..++.++...+....+..
T Consensus        61 ~~iiai~~~~~~~~i~~~l~~   81 (201)
T TIGR03570        61 DLVVAIGDNKLRRRLFEKLKA   81 (201)
T ss_pred             EEEEEcCCHHHHHHHHHHHHh
Confidence            456667666666655555443

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.13  E-value=2.1e-10  Score=91.50  Aligned_cols=83  Identities=12%  Similarity=0.194  Sum_probs=50.3

Q ss_pred             ceEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCE
Q 018622          232 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK  309 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~  309 (353)
                      ++.||++|.|+ ++.+ .+++|+++|.|++++.+.+..+..                    ..+..++.+.+++||+++.
T Consensus        16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------------------~~~~~~~~~~~~~Ig~~~~   75 (119)
T cd03358          16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR--------------------SKIYRKWELKGTTVKRGAS   75 (119)
T ss_pred             CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCc--------------------cccccccccCCcEECCCcE
Confidence            56777777776 4444 356777777777777666644333                    2444566677777888888


Q ss_pred             ECCCeEEccCCCcccccCCCCceEE
Q 018622          310 IGKDVVIVNKDDVQEADRPELGFYI  334 (353)
Q Consensus       310 Ig~~~~i~~~~~~~~~~~~~~~~~i  334 (353)
                      ||+++++..+..+++.+.++.++.+
T Consensus        76 Ig~~~~v~~~~~ig~~~~i~~~~~v  100 (119)
T cd03358          76 IGANATILPGVTIGEYALVGAGAVV  100 (119)
T ss_pred             ECcCCEEeCCcEECCCCEEccCCEE
Confidence            8887777655444444444433333

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.12  E-value=1.1e-09  Score=92.98  Aligned_cols=106  Identities=12%  Similarity=0.206  Sum_probs=79.0

Q ss_pred             ccCCCCceecCCCCCCCeEEec-eeee-----ceEECCCcEEC-ceEEe-----eeEEcCCcEECCCCEEeceEEECCcc
Q 018622          206 FYDPKTPFYTSPRFLPPTKIDN-CRIK-----DAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDTVMLGADY  273 (353)
Q Consensus       206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~-----~~~ig~~~~i~-~~~v~-----~~~ig~~~~ig~~~~i~~~v~~~~~~  273 (353)
                      ++++.+.+.+++.++++++|.. +.+.     ++.||++|.|+ ++.+.     ++.||+++.|+.++.|.+.+.+++. 
T Consensus        10 ~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~-   88 (167)
T cd00710          10 YVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN-   88 (167)
T ss_pred             EECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC-
Confidence            3455666666666667777754 5554     37899999998 56663     5889999999999999987777765 


Q ss_pred             ccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCC
Q 018622          274 YQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL  330 (353)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~  330 (353)
                                       +.||.++.|.++.||+++.||+++.+.+ ..+++...++.
T Consensus        89 -----------------~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~-~~i~~~~~v~~  127 (167)
T cd00710          89 -----------------CFIGFRSVVFNAKVGDNCVIGHNAVVDG-VEIPPGRYVPA  127 (167)
T ss_pred             -----------------CEECCCCEEECCEECCCCEEcCCCEEeC-CEeCCCCEECC
Confidence                             8999999999999999999999999853 33443333333

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.11  E-value=3.2e-10  Score=111.66  Aligned_cols=70  Identities=17%  Similarity=0.327  Sum_probs=47.5

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEEC
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG  311 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig  311 (353)
                      ++.|+++|.|+    .+++||++|.|+++|+|+++++.++                   +.|++++.+.+++|++++.||
T Consensus       274 ~~~I~~~~~I~----~~~~Ig~~~~I~~~~~I~~~~Ig~~-------------------~~I~~~~~i~~~~i~~~~~ig  330 (459)
T PRK14355        274 DTTIYPGVCIS----GDTRIGEGCTIEQGVVIKGCRIGDD-------------------VTVKAGSVLEDSVVGDDVAIG  330 (459)
T ss_pred             CCEEeCCcEEe----CCCEECCCCEECCCCEEeCCEEcCC-------------------CEECCCeEEeCCEECCCCEEC
Confidence            45555555554    3689999999999999998887777                   667777777666666666666


Q ss_pred             CCeEEccCCCccc
Q 018622          312 KDVVIVNKDDVQE  324 (353)
Q Consensus       312 ~~~~i~~~~~~~~  324 (353)
                      +++.+..+..+++
T Consensus       331 ~~~~i~~~~~i~~  343 (459)
T PRK14355        331 PMAHLRPGTELSA  343 (459)
T ss_pred             CCCEECCCCEeCC
Confidence            5555544433333

>PLN02296 carbonate dehydratase

Probab=99.10  E-value=4.2e-10  Score=102.01  Aligned_cols=97  Identities=22%  Similarity=0.388  Sum_probs=66.7

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEece---EEECCccccchhHHHHhhcCCCcceEeCCCeEEc---------
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR---------  300 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~---------  300 (353)
                      +.|.+++.|.    .++.||++|.|+.+|+|+..   +.++++                  +.|++++.|.         
T Consensus        59 ~~I~p~A~V~----G~V~IG~~~~I~~gavI~g~~~~I~IG~~------------------~~I~d~~vI~~~~~~~~g~  116 (269)
T PLN02296         59 AFVAPSASVI----GDVQVGRGSSIWYGCVLRGDVNSISVGSG------------------TNIQDNSLVHVAKTNLSGK  116 (269)
T ss_pred             CEECCCcEEE----cceEECCCCEECCCCEEEcCCCceEECCC------------------CEECCCCEEEeCCCcccCC
Confidence            4455555544    35677888888888877765   355543                  7777777774         


Q ss_pred             --ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          301 --NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       301 --~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                        +|+||++|+||.++++.+ ..+++.+.|+.++.|.++ ++|+++++|++|++|
T Consensus       117 ~~~siIG~~v~IG~~avI~g-~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV  169 (269)
T PLN02296        117 VLPTIIGDNVTIGHSAVLHG-CTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV  169 (269)
T ss_pred             CCCcEeCCCCEECCCceecC-CEECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence              578888888888887754 456777777777777776 455777777777764

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.09  E-value=1.1e-09  Score=94.56  Aligned_cols=96  Identities=13%  Similarity=0.267  Sum_probs=70.7

Q ss_pred             ccCCCCceecCCCCCCCeEEe-ceeee----ceEECCCcEEC-ceEE-----eeeEEcCCcEECCCCEEeceEEECCccc
Q 018622          206 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYY  274 (353)
Q Consensus       206 ~~~~~~~i~~~~~i~~~~~i~-~~~i~----~~~ig~~~~i~-~~~v-----~~~~ig~~~~ig~~~~i~~~v~~~~~~~  274 (353)
                      ++++.+.+.+.+.|++++.|. ++.|.    .++||++|.|+ ++.|     .+|+|+++++|+++|.|.++++.++   
T Consensus        16 ~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~---   92 (192)
T TIGR02287        16 YVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN---   92 (192)
T ss_pred             EECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC---
Confidence            345555555666666666665 35554    35777777777 5555     4689999999999999888877776   


Q ss_pred             cchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCC
Q 018622          275 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD  320 (353)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~  320 (353)
                                      +.||.++.+. +++||+++.|++++.+..+.
T Consensus        93 ----------------~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~  123 (192)
T TIGR02287        93 ----------------ALVGMNAVVMDGAVIGENSIVAASAFVKAGA  123 (192)
T ss_pred             ----------------CEECCCcccCCCeEECCCCEEcCCCEECCCC
Confidence                            7888888886 68888888888888887653

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>PLN02472 uncharacterized protein

Probab=99.08  E-value=6.2e-10  Score=99.61  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=75.9

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEece---EEECCccccchhHHHHhhcCCCcceEeCCCeEEc--------
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR--------  300 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~--------  300 (353)
                      ++.|.++++|.    .++.||+++.|..+++|++.   +.++.+                  +.|+++|.|.        
T Consensus        65 ~~~I~p~a~i~----G~V~Ig~~a~I~~gavirgd~~~I~IG~~------------------t~Ig~~~vI~~~~~~~~~  122 (246)
T PLN02472         65 DAYVAPNVVLA----GQVTVWDGASVWNGAVLRGDLNKITVGFC------------------SNVQERCVLHAAWNSPTG  122 (246)
T ss_pred             CCEECCCCEEe----cCEEECCCCEEcCCCEEecCCcceEECCC------------------CEECCCCEEeecCccccC
Confidence            45666666665    35788999999888888865   666654                  7888888884        


Q ss_pred             ---ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          301 ---NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       301 ---~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                         +++||++|+||.++.+. +..+++.+.||.++.|.++ ++||++++|++|++|
T Consensus       123 i~~~tvIG~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsvV  176 (246)
T PLN02472        123 LPAETLIDRYVTIGAYSLLR-SCTIEPECIIGQHSILMEG-SLVETHSILEAGSVL  176 (246)
T ss_pred             CCCCcEECCCCEECCCcEEC-CeEEcCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence               58999999999999886 4567788888888888777 566888888888764

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.08  E-value=1.1e-09  Score=92.29  Aligned_cols=99  Identities=16%  Similarity=0.186  Sum_probs=63.4

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEEC
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG  311 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig  311 (353)
                      ++.|+++|+|. +.+.++.||++|.|+++|+|+++..+.+...   ......++++   +.|++++.+.+++|++++.||
T Consensus        27 ~~~I~~~~~I~-g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~---~~~~v~Ig~~---~~Ig~~~~i~~~~Ig~~v~Ig   99 (161)
T cd03359          27 KTIIQSDVIIR-GDLATVSIGRYCILSEGCVIRPPFKKFSKGV---AFFPLHIGDY---VFIGENCVVNAAQIGSYVHIG   99 (161)
T ss_pred             ceEEcCCCEEe-CCCcceEECCCcEECCCCEEeCCccccCCCc---cccCeEECCc---cEECCCCEEEeeEEcCCcEEC
Confidence            45666666555 1223578999999999999997653332110   0011233444   788999999899999999999


Q ss_pred             CCeEEccCCCcccccCCCCceEEccC
Q 018622          312 KDVVIVNKDDVQEADRPELGFYIRSG  337 (353)
Q Consensus       312 ~~~~i~~~~~~~~~~~~~~~~~i~~~  337 (353)
                      +++.++.+..+++.+.++.++++..+
T Consensus       100 ~~~~Ig~~~~I~~~~~i~~g~~V~~~  125 (161)
T cd03359         100 KNCVIGRRCIIKDCVKILDGTVVPPD  125 (161)
T ss_pred             CCCEEcCCCEECCCcEECCCCEECCC
Confidence            99988776555544444444444433

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.06  E-value=2.3e-09  Score=92.57  Aligned_cols=28  Identities=14%  Similarity=0.313  Sum_probs=13.7

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEcc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~  318 (353)
                      +.|++++.+. +++||+++.||.++.+..
T Consensus       139 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~  167 (197)
T cd03360         139 VHIAPGVVLSGGVTIGEGAFIGAGATIIQ  167 (197)
T ss_pred             CEECCCCEEcCCcEECCCCEECCCCEEcC
Confidence            4444444443 345555555555554443

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.06  E-value=3e-09  Score=88.97  Aligned_cols=95  Identities=13%  Similarity=0.154  Sum_probs=75.1

Q ss_pred             ccCCCCceecCCCCCCCeEEec-eeeec----eEECCCcEEC-ceEEee-----eEEcCCcEECCCCEEeceEEECCccc
Q 018622          206 FYDPKTPFYTSPRFLPPTKIDN-CRIKD----AIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADYY  274 (353)
Q Consensus       206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~~----~~ig~~~~i~-~~~v~~-----~~ig~~~~ig~~~~i~~~v~~~~~~~  274 (353)
                      ++++.+.+.+.+.+++++.|.. +.|.+    +.||++|.|+ ++.|..     ++||+++.|+.++.+.++++-++   
T Consensus         8 ~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~---   84 (154)
T cd04650           8 YVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY---   84 (154)
T ss_pred             EECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC---
Confidence            4566677777777888888864 66654    5899999998 677754     78999999999999987765555   


Q ss_pred             cchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          275 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                                      +.|+.++.+. +++|++++.|++++.+..+
T Consensus        85 ----------------~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g  114 (154)
T cd04650          85 ----------------VIVGMGAILLNGAKIGDHVIIGAGAVVTPG  114 (154)
T ss_pred             ----------------CEEcCCCEEeCCCEECCCCEECCCCEECCC
Confidence                            8899998885 7889999999988888765

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.05  E-value=1.3e-09  Score=92.05  Aligned_cols=98  Identities=14%  Similarity=0.181  Sum_probs=69.6

Q ss_pred             cCCCCceecCCCCCCCeEEec-eeee----ceEECCCcEEC-ceEEee-----------eEEcCCcEECCCCEEeceEEE
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRIK----DAIISHGCFLR-ECTVEH-----------SIVGERSRLDYGVELKDTVML  269 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i~----~~~ig~~~~i~-~~~v~~-----------~~ig~~~~ig~~~~i~~~v~~  269 (353)
                      +++.+.+.+.+.+++++.|.. +.+.    .+.||++|.|+ ++.|.+           +.||+++.++.++.|.++++.
T Consensus         8 I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IG   87 (164)
T cd04646           8 VCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIG   87 (164)
T ss_pred             ECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEEC
Confidence            455555666666777777754 5553    36888888888 666754           457788888888888874444


Q ss_pred             CCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcc
Q 018622          270 GADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQ  323 (353)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~  323 (353)
                      ++                   +.||+++.|. ++.||+++.||+++++..+..++
T Consensus        88 d~-------------------~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~  123 (164)
T cd04646          88 NN-------------------NVFESKSFVGKNVIITDGCIIGAGCKLPSSEILP  123 (164)
T ss_pred             CC-------------------CEEeCCCEECCCCEECCCCEEeCCeEECCCcEEC
Confidence            44                   7888888885 78888888888888887653333

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.04  E-value=1.6e-09  Score=79.69  Aligned_cols=75  Identities=19%  Similarity=0.390  Sum_probs=60.9

Q ss_pred             CCCCeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCC
Q 018622          219 FLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN  296 (353)
Q Consensus       219 i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~  296 (353)
                      +++++.|+. +.+.++.|+++|.|+ ++.+.+++|++++.|++++.|.++++.++                   +.|+++
T Consensus         2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~   62 (79)
T cd05787           2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKG   62 (79)
T ss_pred             ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCC
Confidence            456666654 667788999999998 68888999999999999999998888877                   788888


Q ss_pred             eEEc-ceEeCCCCEECC
Q 018622          297 TKIR-NCIIDKNVKIGK  312 (353)
Q Consensus       297 ~~i~-~~iig~~~~Ig~  312 (353)
                      +.|. ++++++++.||+
T Consensus        63 ~~i~~~~~v~~~~~ig~   79 (79)
T cd05787          63 CTIPPGSLISFGVVIGD   79 (79)
T ss_pred             CEECCCCEEeCCcEeCc
Confidence            8776 577777776663

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.04  E-value=1.8e-09  Score=79.95  Aligned_cols=74  Identities=19%  Similarity=0.299  Sum_probs=60.2

Q ss_pred             CCCeEEec-eee-eceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCC
Q 018622          220 LPPTKIDN-CRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN  296 (353)
Q Consensus       220 ~~~~~i~~-~~i-~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~  296 (353)
                      +++++|+. +.+ .+++|+++|.|+ ++.|.+++|++++.|++++.|.++++..+                   +.|+++
T Consensus         3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~   63 (80)
T cd05824           3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRW   63 (80)
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCC
Confidence            34444432 444 268999999998 78889999999999999999999998888                   899999


Q ss_pred             eEEcc-eEeCCCCEECC
Q 018622          297 TKIRN-CIIDKNVKIGK  312 (353)
Q Consensus       297 ~~i~~-~iig~~~~Ig~  312 (353)
                      +.+.+ +++++++.|++
T Consensus        64 ~~~~~~~~ig~~~~i~~   80 (80)
T cd05824          64 TRLENVTVLGDDVTIKD   80 (80)
T ss_pred             cEEecCEEECCceEECC
Confidence            99985 88888877763

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.03  E-value=1.9e-09  Score=96.49  Aligned_cols=99  Identities=22%  Similarity=0.295  Sum_probs=62.7

Q ss_pred             CCCCCCeEEeceeeeceEECCCcEECceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCC
Q 018622          217 PRFLPPTKIDNCRIKDAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR  295 (353)
Q Consensus       217 ~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~  295 (353)
                      +++.|++.+..    ++.||++|+|..+.+ .++.||++|.|+.++.|++++.++.+                  |+|+.
T Consensus       101 ~rv~p~a~i~~----ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~n------------------v~I~~  158 (269)
T TIGR00965       101 FRVVPGAAVRQ----GAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLSG  158 (269)
T ss_pred             EEECCCcEECC----CcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCC------------------CEEcC
Confidence            34444444432    567777777763322 24567777777777777766666654                  67777


Q ss_pred             CeEE---------cceEeCCCCEECCCeEEccCCCcccccCCCCceEEccC
Q 018622          296 NTKI---------RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG  337 (353)
Q Consensus       296 ~~~i---------~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~  337 (353)
                      ++.|         ..++|+++|.||+++.|.++..+++.+.++.+++|+.+
T Consensus       159 g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~  209 (269)
T TIGR00965       159 GVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQS  209 (269)
T ss_pred             CcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCC
Confidence            7766         34788888888888888777555555555555555444

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=6.1e-10  Score=102.36  Aligned_cols=119  Identities=16%  Similarity=0.209  Sum_probs=91.2

Q ss_pred             ceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcE
Q 018622          179 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSR  256 (353)
Q Consensus       179 g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~  256 (353)
                      +.+++++.++-+.+...+-.   +-.......+-+.....+++++.|+. +.|+.|+||++|.|+ .+.|.+|+|.++++
T Consensus       300 ~~y~eiN~~k~~~~l~~e~~---~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~  376 (433)
T KOG1462|consen  300 LSYMEINRDKKLKKLCSEAK---FVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVV  376 (433)
T ss_pred             HHHHhhhHHHHHHHhccccc---cccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcE
Confidence            46778886555543322111   10111111233455667889999984 999999999999999 79999999999999


Q ss_pred             ECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622          257 LDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       257 ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~  319 (353)
                      ||+||.|++|++..+                   +.||++|.+.+|+||.+-.|.+....++.
T Consensus       377 vg~G~~IensIIg~g-------------------A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e  420 (433)
T KOG1462|consen  377 VGDGVNIENSIIGMG-------------------AQIGSGSKLKNCIIGPGYVVEAKGKHGGE  420 (433)
T ss_pred             ecCCcceecceeccc-------------------ceecCCCeeeeeEecCCcEEccccccccc
Confidence            999999999999988                   89999999999999999999987766553

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.03  E-value=1.4e-09  Score=106.21  Aligned_cols=65  Identities=12%  Similarity=0.190  Sum_probs=43.7

Q ss_pred             eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeC
Q 018622          228 CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID  305 (353)
Q Consensus       228 ~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig  305 (353)
                      +.+. ++.||++|.|+ ++.+++|+|+++|.|+. +++.++++..+                   ++|++++.|.+|.||
T Consensus       260 ~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~-------------------~~i~~~~~i~~~~ig  319 (430)
T PRK14359        260 VEFEGECELEEGVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPL-------------------AHIRPKSEIKNTHIG  319 (430)
T ss_pred             cEEcCceEECCCCEECCCeEEEeeEECCCCEEec-cEEeCCEECCC-------------------CEECCCcEEeccEEc
Confidence            4443 58888888888 67777888888888876 66677766665                   555555555555555


Q ss_pred             CCCEECC
Q 018622          306 KNVKIGK  312 (353)
Q Consensus       306 ~~~~Ig~  312 (353)
                      +++.|+.
T Consensus       320 ~~~~i~~  326 (430)
T PRK14359        320 NFVETKN  326 (430)
T ss_pred             CcEEEcc
Confidence            5554433

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.03  E-value=2.2e-09  Score=96.99  Aligned_cols=102  Identities=20%  Similarity=0.263  Sum_probs=64.0

Q ss_pred             ecCCCCCCCeEEeceeeeceEECCCcEECceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceE
Q 018622          214 YTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIG  292 (353)
Q Consensus       214 ~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  292 (353)
                      ..++++.|+++++.    ++.|+++++|.++.+ .++.|+++|.|+.++.|++++.++.+                  ++
T Consensus       101 ~~~~rI~p~a~V~~----ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~n------------------v~  158 (272)
T PRK11830        101 EAGVRVVPGAVVRR----GAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VH  158 (272)
T ss_pred             cCCcEEcCCeEECC----CCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCC------------------cE
Confidence            34444555554443    566666666653222 24566666666666666666555543                  67


Q ss_pred             eCCCeEEcc---------eEeCCCCEECCCeEEccCCCcccccCCCCceEEccC
Q 018622          293 VGRNTKIRN---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG  337 (353)
Q Consensus       293 ig~~~~i~~---------~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~  337 (353)
                      |++++.|.+         ++||++|.||.++++..+..+++.+.++.+++|..+
T Consensus       159 I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g  212 (272)
T PRK11830        159 LSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS  212 (272)
T ss_pred             ECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence            777776653         788888888888888766666666666666666555

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.03  E-value=2.2e-09  Score=88.27  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=19.0

Q ss_pred             eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCC
Q 018622          302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEK  344 (353)
Q Consensus       302 ~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~  344 (353)
                      ++|++++.||+++++..+..+++.+.++.+++|..+ +.|+++
T Consensus        76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~-~~I~~~  117 (139)
T cd03350          76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQS-TPIYDR  117 (139)
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCC-eEeccc
Confidence            445555555555555444333334444444555444 233444

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=98.99  E-value=4.9e-09  Score=87.64  Aligned_cols=95  Identities=12%  Similarity=0.169  Sum_probs=75.5

Q ss_pred             ccCCCCceecCCCCCCCeEEec-eeeec----eEECCCcEEC-ceEEee-----eEEcCCcEECCCCEEeceEEECCccc
Q 018622          206 FYDPKTPFYTSPRFLPPTKIDN-CRIKD----AIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADYY  274 (353)
Q Consensus       206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~~----~~ig~~~~i~-~~~v~~-----~~ig~~~~ig~~~~i~~~v~~~~~~~  274 (353)
                      ++++.+.+.+.+.+++++.|.+ +.|.+    ++||++|.|+ ++.|..     ++|++++.|+.+|.|.++++.++   
T Consensus         7 ~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~---   83 (153)
T cd04645           7 FIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN---   83 (153)
T ss_pred             EECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC---
Confidence            3456666666677777887764 66653    6899999998 677765     59999999999999998776666   


Q ss_pred             cchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          275 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                                      +.|++++.+. +++|++++.|++++.+..+
T Consensus        84 ----------------~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~  113 (153)
T cd04645          84 ----------------CLIGMGAIILDGAVIGKGSIVAAGSLVPPG  113 (153)
T ss_pred             ----------------CEECCCCEEcCCCEECCCCEECCCCEECCC
Confidence                            8999999997 8889999999988887654

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=98.95  E-value=4.4e-09  Score=91.25  Aligned_cols=95  Identities=19%  Similarity=0.250  Sum_probs=59.6

Q ss_pred             cCCCCceecCCCCCCCeEEec-eeeec----eEECCCcEEC-ceEE-----eeeEEcCCcEECCCCEEeceEEECCcccc
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRIKD----AIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYYQ  275 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i~~----~~ig~~~~i~-~~~v-----~~~~ig~~~~ig~~~~i~~~v~~~~~~~~  275 (353)
                      +++++.+.+.+.|++++.|.. +.|++    ++|+++|.|+ ++.|     .+++|+++++||.+|.+.++++-++    
T Consensus        19 I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~----   94 (196)
T PRK13627         19 VHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRD----   94 (196)
T ss_pred             ECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCC----
Confidence            344444445555555555542 44432    3445555555 3333     3577888888888887777765545    


Q ss_pred             chhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCC
Q 018622          276 TESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD  320 (353)
Q Consensus       276 ~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~  320 (353)
                                     +.||.++.|. ++.||+++.|++++++..+.
T Consensus        95 ---------------v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~  125 (196)
T PRK13627         95 ---------------ALVGMNSVIMDGAVIGEESIVAAMSFVKAGF  125 (196)
T ss_pred             ---------------CEECcCCccCCCcEECCCCEEcCCCEEeCCc
Confidence                           7788887776 67788888888888776653

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=98.93  E-value=1e-08  Score=85.63  Aligned_cols=97  Identities=11%  Similarity=0.206  Sum_probs=66.9

Q ss_pred             ccCCCCceecCCCCCCCeEEec-eeee----ceEECCCcEECceEEe------eeEEcCCcEECCCCEEeceEEECCccc
Q 018622          206 FYDPKTPFYTSPRFLPPTKIDN-CRIK----DAIISHGCFLRECTVE------HSIVGERSRLDYGVELKDTVMLGADYY  274 (353)
Q Consensus       206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~----~~~ig~~~~i~~~~v~------~~~ig~~~~ig~~~~i~~~v~~~~~~~  274 (353)
                      |++|++.+-.++.|++++.|.. +.++    ...||++|-|.++++.      .+.||++++||.+|.|.++.+-++   
T Consensus        19 ~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~---   95 (176)
T COG0663          19 FVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN---   95 (176)
T ss_pred             EECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC---
Confidence            6677777777777888877753 5554    4677888888743332      467777777777777777544444   


Q ss_pred             cchhHHHHhhcCCCcceEeCCCeEEcc-eEeCCCCEECCCeEEccCCC
Q 018622          275 QTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDD  321 (353)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~ig~~~~i~~-~iig~~~~Ig~~~~i~~~~~  321 (353)
                                      +.||-|+.|-+ |.||++|.||+++.+..+..
T Consensus        96 ----------------~lIGmgA~vldga~IG~~~iVgAgalV~~~k~  127 (176)
T COG0663          96 ----------------VLIGMGATVLDGAVIGDGSIVGAGALVTPGKE  127 (176)
T ss_pred             ----------------cEEecCceEeCCcEECCCcEEccCCcccCCcC
Confidence                            67777777764 77777788777777766543

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=98.93  E-value=5.6e-09  Score=84.84  Aligned_cols=61  Identities=16%  Similarity=0.220  Sum_probs=29.6

Q ss_pred             eEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCC
Q 018622          249 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD  320 (353)
Q Consensus       249 ~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~  320 (353)
                      ++|+++|.||++|.|. +. +.+     ....+..++++   +.||.++.| +..||++++||+++++..+.
T Consensus        48 a~Ighd~~IG~~~~I~-~~-l~G-----~~~~pV~IG~~---~~IG~ga~I-gv~IG~~~vIGaGsvV~k~t  108 (147)
T cd04649          48 VIVGKGSDVGGGASIM-GT-LSG-----GGNNVISIGKR---CLLGANSGI-GISLGDNCIVEAGLYVTAGT  108 (147)
T ss_pred             EEECCCCEECCCCEEE-EE-CCC-----CcccCEEECCC---CEECCCCEE-eEEECCCCEECCCCEEeCCe
Confidence            5555555555555555 11 111     11122344444   555555555 55566666666665555443

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=98.91  E-value=9.5e-09  Score=91.52  Aligned_cols=94  Identities=16%  Similarity=0.255  Sum_probs=67.2

Q ss_pred             cCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEec--------eEEECCccc
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD--------TVMLGADYY  274 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~--------~v~~~~~~~  274 (353)
                      +++.+.+.+.+.+++++.|.. +.+. ++.||++|.|+ ++.+. +++||++|+||.++.|.+        .++++++  
T Consensus        89 I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~--  166 (231)
T TIGR03532        89 IEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDN--  166 (231)
T ss_pred             ECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCC--
Confidence            345555666666666666653 5554 68888888888 66664 788999999999998875        2333332  


Q ss_pred             cchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEcc
Q 018622          275 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~  318 (353)
                                      +.||.++.|. ++.||+++.|++++++..
T Consensus       167 ----------------v~IG~gsvI~~g~~Ig~~~~IgagsvV~~  195 (231)
T TIGR03532       167 ----------------VLIGANAVILEGVRVGKGAVVAAGAIVTE  195 (231)
T ss_pred             ----------------cEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence                            7888888875 788888888888887765

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PLN02694 serine O-acetyltransferase

Probab=98.89  E-value=6.4e-09  Score=94.10  Aligned_cols=79  Identities=23%  Similarity=0.376  Sum_probs=45.8

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhH-HHHhhcCCCcceEeCCCeEE-cceEeCCCCEE
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESE-IASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI  310 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~ig~~~~i-~~~iig~~~~I  310 (353)
                      +.||+++.|.++  ..++||++|.||++|.|..++.+++..  .... -.++++++   +.||.++.| .++.||+++.|
T Consensus       167 A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g--~~~~~r~piIGd~---V~IGagA~Ilggi~IGd~a~I  239 (294)
T PLN02694        167 AKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTG--KACGDRHPKIGDG---VLIGAGATILGNVKIGEGAKI  239 (294)
T ss_pred             ceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCcc--cccCCCccEECCC---eEECCeeEECCCCEECCCCEE
Confidence            444445444421  246777777777777777777776521  0000 12344444   666766666 36777777777


Q ss_pred             CCCeEEcc
Q 018622          311 GKDVVIVN  318 (353)
Q Consensus       311 g~~~~i~~  318 (353)
                      |+++++..
T Consensus       240 GAgSVV~k  247 (294)
T PLN02694        240 GAGSVVLI  247 (294)
T ss_pred             CCCCEECC
Confidence            77776654

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=98.88  E-value=1.1e-08  Score=88.92  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=10.3

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEE
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVI  316 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i  316 (353)
                      +.|+.++.+. ++.|++++.|++++++
T Consensus       160 ~~ig~~~~v~~~~~i~~~~~i~~~~~v  186 (201)
T TIGR03570       160 VFIGAGATIIQGVTIGAGAIVGAGAVV  186 (201)
T ss_pred             CEECCCCEEeCCCEECCCCEECCCCEE
Confidence            3344443333 3344444444444333

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.88  E-value=9.5e-09  Score=79.49  Aligned_cols=66  Identities=11%  Similarity=0.229  Sum_probs=46.1

Q ss_pred             ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCE
Q 018622          232 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK  309 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~  309 (353)
                      +++||++|.|+ ++.|. +++||++|.||.  .|.+++++++                   +.+++++.|.+++||+++.
T Consensus        29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~   87 (101)
T cd05635          29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN   87 (101)
T ss_pred             CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence            45666666665 34443 466666676654  4667777766                   6788888888888888888


Q ss_pred             ECCCeEEcc
Q 018622          310 IGKDVVIVN  318 (353)
Q Consensus       310 Ig~~~~i~~  318 (353)
                      ||+++.+.|
T Consensus        88 ig~~~~~~~   96 (101)
T cd05635          88 LGAGTNNSD   96 (101)
T ss_pred             ECCCceecc
Confidence            888887765

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=98.86  E-value=1.4e-08  Score=87.66  Aligned_cols=8  Identities=25%  Similarity=0.339  Sum_probs=4.5

Q ss_pred             eEeEcCCH
Q 018622          180 YWEDIGTI  187 (353)
Q Consensus       180 ~w~dIgtp  187 (353)
                      .+..++++
T Consensus        59 ~iiai~~~   66 (197)
T cd03360          59 FVVAIGDN   66 (197)
T ss_pred             EEEecCCH
Confidence            44555666

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.85  E-value=8.6e-09  Score=99.07  Aligned_cols=90  Identities=13%  Similarity=0.216  Sum_probs=70.8

Q ss_pred             cCCCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhc
Q 018622          207 YDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLA  285 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~  285 (353)
                      +++++.+ ..+.|++++.|.+ .+++|+||++|.|+ ++.|.+|+|+++|.|+++|+|.++++.++              
T Consensus       285 i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~--------------  348 (380)
T PRK05293        285 IAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN--------------  348 (380)
T ss_pred             ECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC--------------
Confidence            3444444 2344566666642 45679999999999 78899999999999999999999888877              


Q ss_pred             CCCcceEeCCCeEEcc-----eEeCCCCEECCCeEEc
Q 018622          286 EGKVPIGVGRNTKIRN-----CIIDKNVKIGKDVVIV  317 (353)
Q Consensus       286 ~~~~~~~ig~~~~i~~-----~iig~~~~Ig~~~~i~  317 (353)
                           +.|++++.+.+     .+||+++.|+++++|+
T Consensus       349 -----~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~  380 (380)
T PRK05293        349 -----AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG  380 (380)
T ss_pred             -----CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence                 89999999986     7888888888887763

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.82  E-value=2.6e-08  Score=77.05  Aligned_cols=80  Identities=14%  Similarity=0.263  Sum_probs=46.0

Q ss_pred             eEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEE
Q 018622          233 AIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI  310 (353)
Q Consensus       233 ~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~I  310 (353)
                      +.|+++|.|+ ++.+ ..+.||+++.|+++|.|++.+.++.+                  +.|+.  .|.+|+|++++.|
T Consensus        12 v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~i   71 (101)
T cd05635          12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSNK   71 (101)
T ss_pred             EEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCEe
Confidence            4444444444 2222 23666666666666666655555443                  55543  3456666666666


Q ss_pred             CCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCcc
Q 018622          311 GKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV  352 (353)
Q Consensus       311 g~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~v  352 (353)
                      +.++.+++                    ++||+++.|+++++
T Consensus        72 ~~~~~lg~--------------------siIg~~v~ig~~~~   93 (101)
T cd05635          72 QHDGFLGH--------------------SYLGSWCNLGAGTN   93 (101)
T ss_pred             cCcCEEee--------------------eEECCCCEECCCce
Confidence            66655542                    57788888888765

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=98.78  E-value=5.7e-08  Score=78.98  Aligned_cols=13  Identities=15%  Similarity=0.401  Sum_probs=7.0

Q ss_pred             EecCCcEECCCcc
Q 018622          340 IIMEKATIEDGMV  352 (353)
Q Consensus       340 vig~~~~i~~g~v  352 (353)
                      .||++++|++|++
T Consensus        91 ~IG~~~vIGaGsv  103 (147)
T cd04649          91 SLGDNCIVEAGLY  103 (147)
T ss_pred             EECCCCEECCCCE
Confidence            3455555555554

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PRK10502 putative acyl transferase; Provisional

Probab=98.77  E-value=4.7e-08  Score=84.04  Aligned_cols=51  Identities=10%  Similarity=0.050  Sum_probs=27.4

Q ss_pred             eecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe---eeEEcCCcEECCCCEEec
Q 018622          213 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKD  265 (353)
Q Consensus       213 i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~---~~~ig~~~~ig~~~~i~~  265 (353)
                      +..++.|.+++.|...  .+..||++|.|+ ++.+.   .+.||++|.|++++.|..
T Consensus        54 iG~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~  108 (182)
T PRK10502         54 IGKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCT  108 (182)
T ss_pred             cCCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEEC
Confidence            3344444555544310  135556666665 33332   467777777777777653

>PLN02917 CMP-KDO synthetase

Probab=98.76  E-value=1.7e-07  Score=86.71  Aligned_cols=162  Identities=16%  Similarity=0.152  Sum_probs=104.9

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEEEEEE--EeCCCCCCcceEEE--
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCA--AVGESRASDYGLVK--   89 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~tll~~--~~~~~~~~~~g~v~--   89 (353)
                      ..+.||+++ ..+.+.++.    ..+.+++++||.-  ....+.++++.+.+. .++++++.  +...+.+..||.+.  
T Consensus       117 ~~~~GT~~~-~~a~~~l~~----~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv  190 (293)
T PLN02917        117 SCRNGTERC-NEALKKLEK----KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCV  190 (293)
T ss_pred             ccCCchHHH-HHHHHhccC----CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEE
Confidence            456789987 577777752    2468999999993  456789999988654 34444333  22223367899885  


Q ss_pred             ECCCCCeeEEEeCCC--ccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhh
Q 018622           90 IDNMGRIAQFAEKPS--GANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIP  164 (353)
Q Consensus        90 ~d~~g~V~~~~ekp~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~  164 (353)
                      +|++|+++.|..++-  ......          .    +....+.++|+|+|+.+.|. .+.+..++   ...+++|+. 
T Consensus       191 ~~~~g~alyfsr~~Ipe~kd~~~----------~----~~~i~~~n~Giy~f~~~~L~-~l~~l~~~n~e~e~yLtdl~-  254 (293)
T PLN02917        191 VDNQGYAIYFSRGLIPYNKSGKV----------N----PQFPYLLHLGIQSYDAKFLK-IYPELPPTPLQLEEDLEQLK-  254 (293)
T ss_pred             ECCCCeEEEeecCcCCcCCCccc----------c----cccceEEEEEEEEeCHHHHH-HHHcCCCCcccchhccHHHH-
Confidence            787888775553321  100000          0    00135889999999999998 44443322   234566665 


Q ss_pred             hhhhc-CcEEEEEecceEeEcCCHHHHHHHHHhhccC
Q 018622          165 AAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKE  200 (353)
Q Consensus       165 ~l~~~-~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~  200 (353)
                       ++++ .+|.++..+...+-|+|++++.++++.+.++
T Consensus       255 -~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~  290 (293)
T PLN02917        255 -VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER  290 (293)
T ss_pred             -HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence             4444 5788888766677999999999999877543

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.75  E-value=6.7e-08  Score=87.63  Aligned_cols=15  Identities=13%  Similarity=0.264  Sum_probs=7.3

Q ss_pred             eEeCCCCEECCCeEE
Q 018622          302 CIIDKNVKIGKDVVI  316 (353)
Q Consensus       302 ~iig~~~~Ig~~~~i  316 (353)
                      +.||++|.||.++.+
T Consensus       251 V~IGe~~lIGagA~I  265 (341)
T TIGR03536       251 ISVGEGCLLGANAGI  265 (341)
T ss_pred             EEECCCcEECCCCEE
Confidence            444444555554444

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=98.75  E-value=1.3e-07  Score=79.70  Aligned_cols=68  Identities=22%  Similarity=0.374  Sum_probs=45.0

Q ss_pred             eEECCCcEEC-ceEEe-------------eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeE
Q 018622          233 AIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK  298 (353)
Q Consensus       233 ~~ig~~~~i~-~~~v~-------------~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~  298 (353)
                      +.||++|.|+ ++.|.             ++.||+++.|++++.+.++.+..+                   +.|++++.
T Consensus        43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~-------------------v~Ig~~~~  103 (161)
T cd03359          43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSY-------------------VHIGKNCV  103 (161)
T ss_pred             eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCC-------------------cEECCCCE
Confidence            4566666665 44443             356788888888888777666555                   67777777


Q ss_pred             Ec-ceEeCCCCEECCCeEEccC
Q 018622          299 IR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       299 i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                      |. +++|++++.|++++++..+
T Consensus       104 Ig~~~~I~~~~~i~~g~~V~~~  125 (161)
T cd03359         104 IGRRCIIKDCVKILDGTVVPPD  125 (161)
T ss_pred             EcCCCEECCCcEECCCCEECCC
Confidence            65 6667777777776666554

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=98.73  E-value=3.7e-08  Score=89.11  Aligned_cols=81  Identities=25%  Similarity=0.421  Sum_probs=44.3

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEE
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI  310 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~I  310 (353)
                      ++.||+++.|++.  ...+||++|.||++|.|.+.+.+++..-.. ....+.++++   +.||.|+.|. ++.||+++.|
T Consensus       147 ~a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg~~~~~-~~~~p~IGd~---V~IGaga~Ilggv~IG~~a~I  220 (273)
T PRK11132        147 AAKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGGTGKTS-GDRHPKIREG---VMIGAGAKILGNIEVGRGAKI  220 (273)
T ss_pred             cceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEecCcccC-CCcCCEECCC---cEEcCCCEEcCCCEECCCCEE
Confidence            3455555555521  135777777777777777766665421000 0001334444   5666666665 5666666666


Q ss_pred             CCCeEEcc
Q 018622          311 GKDVVIVN  318 (353)
Q Consensus       311 g~~~~i~~  318 (353)
                      |+++++..
T Consensus       221 GAgSvV~~  228 (273)
T PRK11132        221 GAGSVVLQ  228 (273)
T ss_pred             CCCCEECc
Confidence            66666654

>PLN02357 serine acetyltransferase

Probab=98.72  E-value=4.8e-08  Score=90.93  Aligned_cols=68  Identities=25%  Similarity=0.395  Sum_probs=44.2

Q ss_pred             eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          248 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                      .++||++++||++|.|..++.+++...... .-.++++++   +.||.|+.|. ++.||+++.||+++++..+
T Consensus       246 giVIGe~avIGdnV~I~~gVtIGg~g~~~g-~~~piIGd~---V~IGagA~IlggV~IGdga~IGAgSVV~~d  314 (360)
T PLN02357        246 GVVIGETAVVGNNVSILHNVTLGGTGKQSG-DRHPKIGDG---VLIGAGTCILGNITIGEGAKIGAGSVVLKD  314 (360)
T ss_pred             ceEECCCCEECCCCEEeCCceecCccccCC-ccCceeCCC---eEECCceEEECCeEECCCCEECCCCEECcc
Confidence            366777777777777777766665311100 112455566   7888887774 7888888888888888754

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=3.1e-08  Score=88.33  Aligned_cols=92  Identities=17%  Similarity=0.311  Sum_probs=67.9

Q ss_pred             ccCCCCceecCCCCCCCeEEe-------ceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccch
Q 018622          206 FYDPKTPFYTSPRFLPPTKID-------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE  277 (353)
Q Consensus       206 ~~~~~~~i~~~~~i~~~~~i~-------~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~  277 (353)
                      +++|++.++++++|+|++.|+       ++++++|+|-++|.|. +++|.+|+||+++.||.|++++..-+..+-     
T Consensus       290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~-----  364 (407)
T KOG1460|consen  290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSP-----  364 (407)
T ss_pred             EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCC-----
Confidence            457777777777777776664       3677789999999999 789999999999999999999988776651     


Q ss_pred             hHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622          278 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       278 ~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~  319 (353)
                                       .....--+++|..+.+++.+.+.|.
T Consensus       365 -----------------~~~~~a~Tilga~v~v~dev~v~~s  389 (407)
T KOG1460|consen  365 -----------------NLPFAALTILGADVSVEDEVIVLNS  389 (407)
T ss_pred             -----------------CCCcceeEEecccceecceeEEeee
Confidence                             1112234666677777777666664

>TIGR01172 cysE serine O-acetyltransferase

Probab=98.72  E-value=6.3e-08  Score=81.64  Aligned_cols=37  Identities=27%  Similarity=0.449  Sum_probs=17.8

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECC
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA  271 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~  271 (353)
                      +.||+++.|++.  ..++|++++.||++|.|.+++.++.
T Consensus        68 ~~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig~  104 (162)
T TIGR01172        68 ARIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLGG  104 (162)
T ss_pred             CEECCCeEECCC--CeEEECCCCEECCCCEEcCCCEECC
Confidence            344444444411  1345555555555555555555543

Cysteine biosynthesis

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=98.71  E-value=5.7e-08  Score=85.85  Aligned_cols=107  Identities=11%  Similarity=0.173  Sum_probs=61.6

Q ss_pred             cCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhh
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLL  284 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~  284 (353)
                      +.|.+.+...+++++++.+.. +-|. ++.++.+|.|+    .+.++|..++||++|.|+..+.+.+ .+.+-...+..+
T Consensus       111 I~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd----~~as~G~~a~VGkn~higgGa~I~G-VLep~~a~Pv~I  185 (271)
T COG2171         111 IVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVD----GRASVGSCAQVGKNSHIGGGASIGG-VLEPLQANPVII  185 (271)
T ss_pred             ecCccEEeeccEECCCcEEcccceEEECcccCcceEEe----eeeeeeccEEECCCcccCCcceEeE-EecCCCCCCeEE
Confidence            346667777777777777764 5554 67788888887    2334444444444444444433333 223333344455


Q ss_pred             cCCCcceEeCCCe-EEcceEeCCCCEECCCeEEccCCC
Q 018622          285 AEGKVPIGVGRNT-KIRNCIIDKNVKIGKDVVIVNKDD  321 (353)
Q Consensus       285 ~~~~~~~~ig~~~-~i~~~iig~~~~Ig~~~~i~~~~~  321 (353)
                      +++   |.||.++ .+.++.+|++|.|++++.|..++.
T Consensus       186 gdn---cliGAns~~veGV~vGdg~VV~aGv~I~~~tk  220 (271)
T COG2171         186 GDN---CLIGANSEVVEGVIVGDGCVVAAGVFITQDTK  220 (271)
T ss_pred             CCc---cEeccccceEeeeEeCCCcEEecceEEeCCcc
Confidence            555   6666666 444667777777777766665543

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.71  E-value=9.5e-08  Score=86.20  Aligned_cols=20  Identities=20%  Similarity=0.473  Sum_probs=10.6

Q ss_pred             eEeEcCC--HHHHHHHHHhhcc
Q 018622          180 YWEDIGT--IKSFYEANMALTK  199 (353)
Q Consensus       180 ~w~dIgt--p~~y~~a~~~ll~  199 (353)
                      .|-.-|-  ++.+.+....+..
T Consensus       109 ~Wt~~Gp~~l~~f~~~~~~~~~  130 (319)
T TIGR03535       109 VWTNHGPCAVDDFELTRARLRA  130 (319)
T ss_pred             hhhcCCCcchhhhhhhhHHHhc
Confidence            5666665  5555544444433

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.70  E-value=1.1e-07  Score=69.38  Aligned_cols=34  Identities=12%  Similarity=0.367  Sum_probs=20.3

Q ss_pred             EECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceE
Q 018622          234 IISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTV  267 (353)
Q Consensus       234 ~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v  267 (353)
                      .|+++|.|+ ++.|. ++.||++|.|+++|.|.++.
T Consensus         2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~   37 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAAT   37 (78)
T ss_pred             EECCCeEECCCCEEeCcEEECCCCEECCCCEEEecc
Confidence            445555555 33333 37777777777777777653

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.68  E-value=3.2e-08  Score=78.51  Aligned_cols=109  Identities=14%  Similarity=0.156  Sum_probs=76.6

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEEC
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG  311 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig  311 (353)
                      .++|.++|+|+ +.+.++.+|+.|+++.+++|+...-.-+.....++   --+|+.   +.|++.|.+..+.||+.+++|
T Consensus        39 KtIv~~g~iIR-GDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp---~hiGdh---VFieE~cVVnAAqIgsyVh~G  111 (184)
T KOG3121|consen   39 KTIVEEGVIIR-GDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFP---VHIGDH---VFIEEECVVNAAQIGSYVHLG  111 (184)
T ss_pred             cEEEeeCcEEe-cccccceEcceEEeccccccCCchHHhcCCceeee---eeecce---EEEecceEeehhhheeeeEec
Confidence            58899999998 56778999999999999999977432111110000   111222   778888888889999999999


Q ss_pred             CCeEEccCCCcccccCCCCceEEccCeEEecCCcEEC
Q 018622          312 KDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIE  348 (353)
Q Consensus       312 ~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~  348 (353)
                      .+++|++...+++.|+|.+++++... +++.+.++++
T Consensus       112 knaviGrrCVlkdCc~ild~tVlPpe-t~vppy~~~~  147 (184)
T KOG3121|consen  112 KNAVIGRRCVLKDCCRILDDTVLPPE-TLVPPYSTIG  147 (184)
T ss_pred             cceeEcCceEhhhheeccCCcccCcc-cccCCceEEc
Confidence            99999998888888777776666444 3335555444

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.67  E-value=1.2e-07  Score=69.18  Aligned_cols=68  Identities=29%  Similarity=0.533  Sum_probs=41.8

Q ss_pred             eEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcc---------eEeCCCCEECCCeEEccC
Q 018622          249 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       249 ~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~---------~iig~~~~Ig~~~~i~~~  319 (353)
                      +.||+++.|++++.|.+.+.++.+                  +.|++++.|.+         +.||+++.|+.++.+.. 
T Consensus         1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~-   61 (78)
T cd00208           1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG-   61 (78)
T ss_pred             CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeC-
Confidence            356777777777777765555554                  67777777664         44555555555544433 


Q ss_pred             CCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          320 DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       320 ~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                                       + +.||+++.|+++++|
T Consensus        62 -----------------~-~~ig~~~~i~~~s~v   77 (78)
T cd00208          62 -----------------G-VKIGDNAVIGAGAVV   77 (78)
T ss_pred             -----------------C-CEECCCCEECcCcEe
Confidence                             3 455777777777654

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=98.66  E-value=2.1e-07  Score=80.72  Aligned_cols=34  Identities=9%  Similarity=0.143  Sum_probs=21.8

Q ss_pred             eEECCCcEEC-ceEEe---eeEEcCCcEECCCCEEece
Q 018622          233 AIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDT  266 (353)
Q Consensus       233 ~~ig~~~~i~-~~~v~---~~~ig~~~~ig~~~~i~~~  266 (353)
                      ..||++|.|+ ++.+.   ++.||++|.|+.++.|.+.
T Consensus        66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~  103 (192)
T PRK09677         66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH  103 (192)
T ss_pred             EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence            5566666665 34332   5777777777777777653

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.66  E-value=9.7e-08  Score=91.14  Aligned_cols=64  Identities=22%  Similarity=0.378  Sum_probs=53.1

Q ss_pred             ECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCC
Q 018622          235 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD  313 (353)
Q Consensus       235 ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~  313 (353)
                      +.+.+.|+ .+.+.+|+||++|+|+.+ .+.++++..+                   |+|+++|.|.+|+|++++.||.+
T Consensus       280 ~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~  339 (361)
T TIGR02091       280 LPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRG  339 (361)
T ss_pred             CCCceEecCCCEEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCC
Confidence            34445555 335567999999999986 8899988877                   89999999999999999999999


Q ss_pred             eEEcc
Q 018622          314 VVIVN  318 (353)
Q Consensus       314 ~~i~~  318 (353)
                      +.+.+
T Consensus       340 ~~l~~  344 (361)
T TIGR02091       340 AVIRN  344 (361)
T ss_pred             CEEee
Confidence            99864

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=98.65  E-value=1.3e-07  Score=75.35  Aligned_cols=80  Identities=15%  Similarity=0.244  Sum_probs=45.8

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeC-------
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID-------  305 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig-------  305 (353)
                      +.|+++++|+    .+++||++|.|+.++.|.+.+.++.+                  +.|++++.+.++.+.       
T Consensus         5 ~~I~~~~~i~----~~~~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~   62 (119)
T cd03358           5 CIIGTNVFIE----NDVKIGDNVKIQSNVSIYEGVTIEDD------------------VFIGPNVVFTNDLYPRSKIYRK   62 (119)
T ss_pred             CEECCCcEEC----CCcEECCCcEECCCcEEeCCeEECCC------------------cEEcCCeEEecCCCCccccccc
Confidence            4455555554    25788888888888888655555544                  677777777654332       


Q ss_pred             ---CCCEECCCeEEccCCCcccccCCCCceEE
Q 018622          306 ---KNVKIGKDVVIVNKDDVQEADRPELGFYI  334 (353)
Q Consensus       306 ---~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i  334 (353)
                         .++.||+++.++.+..+.+.+++++++.|
T Consensus        63 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i   94 (119)
T cd03358          63 WELKGTTVKRGASIGANATILPGVTIGEYALV   94 (119)
T ss_pred             cccCCcEECCCcEECcCCEEeCCcEECCCCEE
Confidence               34556666666555433333333333333

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=98.64  E-value=1.9e-07  Score=81.27  Aligned_cols=50  Identities=14%  Similarity=0.177  Sum_probs=30.8

Q ss_pred             ecCCCCCCCeEEeceeeeceEECCCcEEC-ceEE---eeeEEcCCcEECCCCEEec
Q 018622          214 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKD  265 (353)
Q Consensus       214 ~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v---~~~~ig~~~~ig~~~~i~~  265 (353)
                      ..++.|.+|+++.-.  .++.||+++.|+ ++.+   .+..||++|.|+++|.|..
T Consensus        59 g~~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~  112 (203)
T PRK09527         59 GENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSV  112 (203)
T ss_pred             CCCcEEcCCEEEeeC--CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEe
Confidence            345556666665310  145666666666 4444   2478888888888888863

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=98.63  E-value=6.3e-08  Score=85.60  Aligned_cols=99  Identities=22%  Similarity=0.287  Sum_probs=72.0

Q ss_pred             CCCCCCeEEeceeeeceEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeC
Q 018622          217 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG  294 (353)
Q Consensus       217 ~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig  294 (353)
                      ++|.|++.+..    +++|++|++|- ++-| .++.++.++.|.-++.++.++.++.+                  ++||
T Consensus       109 ~RI~p~a~VR~----ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn------------------~hig  166 (271)
T COG2171         109 VRIVPGAIVRL----GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKN------------------SHIG  166 (271)
T ss_pred             eeecCccEEee----ccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCC------------------cccC
Confidence            55555555542    57777777777 3544 46888888888888888888888876                  8888


Q ss_pred             CCeEEcc---------eEeCCCCEECCCeEEccCCCcccccCCCCceEEccC
Q 018622          295 RNTKIRN---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG  337 (353)
Q Consensus       295 ~~~~i~~---------~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~  337 (353)
                      .|+.|.+         ++||+||.||+++++..+..+++.|.+..+.+|..+
T Consensus       167 gGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~  218 (271)
T COG2171         167 GGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQD  218 (271)
T ss_pred             CcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCC
Confidence            8888864         789999999999877666555556555555555544

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.63  E-value=1.3e-07  Score=90.58  Aligned_cols=61  Identities=21%  Similarity=0.441  Sum_probs=52.4

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEEC
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG  311 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig  311 (353)
                      ++.|+++|.|     .+|+||++|+|+  +.|++|+++.+                   |.|+++|.|.+|+|++++.|+
T Consensus       278 p~~i~~~~~i-----~~~~Ig~~~~i~--~~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~I~  331 (369)
T TIGR02092       278 PTYYAENSKV-----ENSLVANGCIIE--GKVENSILSRG-------------------VHVGKDALIKNCIIMQRTVIG  331 (369)
T ss_pred             CcEEcCCCEE-----EEeEEcCCCEEe--eEEeCCEECCC-------------------CEECCCCEEEeeEEeCCCEEC
Confidence            3555555544     689999999997  46999999988                   899999999999999999999


Q ss_pred             CCeEEcc
Q 018622          312 KDVVIVN  318 (353)
Q Consensus       312 ~~~~i~~  318 (353)
                      +++.+.+
T Consensus       332 ~~~~i~~  338 (369)
T TIGR02092       332 EGAHLEN  338 (369)
T ss_pred             CCCEEEE
Confidence            9999876

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.62  E-value=1.4e-07  Score=79.72  Aligned_cols=81  Identities=26%  Similarity=0.402  Sum_probs=52.4

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEEC
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIG  311 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig  311 (353)
                      +.||++..|.++  ...+||+.+.||++|.|..++.+++..-... .--.+++++   +.||+|+.|- +-.||+|+.||
T Consensus        74 A~IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~~g-~RhPtIg~~---V~IGagAkILG~I~IGd~akIG  147 (194)
T COG1045          74 AKIGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKESG-KRHPTIGNG---VYIGAGAKILGNIEIGDNAKIG  147 (194)
T ss_pred             CeECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCcCC-CCCCccCCC---eEECCCCEEEcceEECCCCEEC
Confidence            344555555522  3467777777777777777777776321111 011456666   7888888876 77888888888


Q ss_pred             CCeEEccC
Q 018622          312 KDVVIVNK  319 (353)
Q Consensus       312 ~~~~i~~~  319 (353)
                      +|+++..+
T Consensus       148 A~sVVlkd  155 (194)
T COG1045         148 AGSVVLKD  155 (194)
T ss_pred             CCceEccC
Confidence            88888654

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.62  E-value=1.5e-07  Score=85.35  Aligned_cols=28  Identities=14%  Similarity=0.185  Sum_probs=14.6

Q ss_pred             eEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622          291 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       291 ~~ig~~~~i~~~iig~~~~Ig~~~~i~~~  319 (353)
                      |.||.|+.| +..||++|+||+++++..+
T Consensus       257 ~lIGagA~I-GI~IGd~~iIGAGavVtag  284 (341)
T TIGR03536       257 CLLGANAGI-GIPLGDRCTVEAGLYITAG  284 (341)
T ss_pred             cEECCCCEE-eeEECCCCEECCCCEEeCC
Confidence            455555555 5555555555555555444

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.62  E-value=1.3e-07  Score=92.36  Aligned_cols=99  Identities=15%  Similarity=0.137  Sum_probs=75.5

Q ss_pred             EECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCC-------
Q 018622          234 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK-------  306 (353)
Q Consensus       234 ~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~-------  306 (353)
                      .+.+.+.+.++.+.+|.||++|.| ++|.|++|++..+                   |+||+++.|.+|+|..       
T Consensus       294 ~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~  353 (429)
T PRK02862        294 RYLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESS  353 (429)
T ss_pred             CCCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCcccccc
Confidence            344555555567778999999999 8999999988877                   8999999999999965       


Q ss_pred             ------------CCEECCCeEEccCCCcccccCCCCceEEccCe-----------EEecCC-cEECCCccC
Q 018622          307 ------------NVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----------TIIMEK-ATIEDGMVI  353 (353)
Q Consensus       307 ------------~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~-----------~vig~~-~~i~~g~vv  353 (353)
                                  ++.||++|.|.+ ..++..+++++++.+.++.           .+|+.+ ++|+.++++
T Consensus       354 ~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (429)
T PRK02862        354 EEREELRKEGKPPLGIGEGTTIKR-AIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI  423 (429)
T ss_pred             cccccccccCCcccEECCCCEEEE-EEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence                        699999999975 3456677777777774332           345666 667777654

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.61  E-value=1.5e-07  Score=88.05  Aligned_cols=64  Identities=19%  Similarity=0.331  Sum_probs=55.9

Q ss_pred             EECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECC
Q 018622          234 IISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK  312 (353)
Q Consensus       234 ~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~  312 (353)
                      ...|-+.+. .+.+.+|.|+.||.|..  .|++|++..+                   ++|+.+|.|.+|+|-++|.||+
T Consensus       281 ~~~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~IG~  339 (393)
T COG0448         281 KNLPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEIGE  339 (393)
T ss_pred             CCCCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEECC
Confidence            344555555 45678999999999987  9999999998                   8999999999999999999999


Q ss_pred             CeEEcc
Q 018622          313 DVVIVN  318 (353)
Q Consensus       313 ~~~i~~  318 (353)
                      +|.+.+
T Consensus       340 ~~~l~~  345 (393)
T COG0448         340 GAVLRR  345 (393)
T ss_pred             CCEEEE
Confidence            999986

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=2.2e-07  Score=88.32  Aligned_cols=25  Identities=40%  Similarity=0.605  Sum_probs=10.1

Q ss_pred             EeCCCeEEcceEeCCCCEECCCeEE
Q 018622          292 GVGRNTKIRNCIIDKNVKIGKDVVI  316 (353)
Q Consensus       292 ~ig~~~~i~~~iig~~~~Ig~~~~i  316 (353)
                      .|+.++.|.+|+|.+++.|+.++.+
T Consensus       287 ~I~~~~~i~~Sii~~~~~i~~~~~i  311 (358)
T COG1208         287 TIGNGVEIKNSIIMDNVVIGHGSYI  311 (358)
T ss_pred             EECCCcEEEeeEEEcCCEECCCCEE
Confidence            3333344444444444444443333

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.57  E-value=2.5e-07  Score=71.55  Aligned_cols=20  Identities=35%  Similarity=0.419  Sum_probs=10.2

Q ss_pred             EcceEeCCCCEECCCeEEcc
Q 018622          299 IRNCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       299 i~~~iig~~~~Ig~~~~i~~  318 (353)
                      +..++||+++.|+.++.+..
T Consensus        52 ~~~~~Ig~~~~Ig~~~~i~~   71 (101)
T cd03354          52 KRHPTIGDNVVIGAGAKILG   71 (101)
T ss_pred             CCCCEECCCcEEcCCCEEEC
Confidence            34555555555555555543

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.57  E-value=1.9e-07  Score=90.98  Aligned_cols=55  Identities=13%  Similarity=0.308  Sum_probs=50.6

Q ss_pred             eEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEcc
Q 018622          244 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       244 ~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~  318 (353)
                      +.+.+|+||++|+| ++|.|++|+++.+                   |+|++++.|.+|+|+++|.||+++.+.+
T Consensus       323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~  377 (425)
T PRK00725        323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRR  377 (425)
T ss_pred             ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEee
Confidence            45678999999999 7999999998888                   8999999999999999999999999965

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.56  E-value=3.8e-07  Score=71.28  Aligned_cols=33  Identities=18%  Similarity=0.377  Sum_probs=21.4

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEece
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT  266 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~  266 (353)
                      ++.|+++|.|.+.  .++.||++|.|+++|.|.++
T Consensus         7 ~~~I~~~~~i~~~--~~v~IG~~~~Ig~~~~i~~~   39 (109)
T cd04647           7 NVYIGPGCVISAG--GGITIGDNVLIGPNVTIYDH   39 (109)
T ss_pred             CcEECCCCEEecC--CceEECCCCEECCCCEEECC
Confidence            3444444444411  25888888888888888876

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.56  E-value=2.4e-07  Score=89.94  Aligned_cols=54  Identities=19%  Similarity=0.433  Sum_probs=49.8

Q ss_pred             EEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEcc
Q 018622          245 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       245 ~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~  318 (353)
                      .+.+++||++|.|+ ++.|+++++..+                   |.|++++.|.+|+|+++|.||+++.+.+
T Consensus       312 ~~~~~~ig~~~~I~-~~~i~~svIg~~-------------------~~I~~~~~i~~sii~~~~~i~~~~~i~~  365 (407)
T PRK00844        312 SAQDSLVSAGSIIS-GATVRNSVLSPN-------------------VVVESGAEVEDSVLMDGVRIGRGAVVRR  365 (407)
T ss_pred             eEEeCEEcCCCEEC-CeeeEcCEECCC-------------------CEECCCCEEeeeEECCCCEECCCCEEEe
Confidence            45789999999999 999999888777                   8999999999999999999999999976

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.54  E-value=3.2e-07  Score=87.33  Aligned_cols=92  Identities=11%  Similarity=0.116  Sum_probs=52.9

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEEC
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG  311 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig  311 (353)
                      +++|+++|.|     .+++|++.|.||++|.|+++++.++                   +.|+++|.|.+|.|. ++.|+
T Consensus       254 ~~~i~~~~~i-----~~~~i~~~~~Ig~~~~I~~~~i~~~-------------------~~Ig~~~~i~~~~i~-~s~i~  308 (353)
T TIGR01208       254 RVVVGEGAKI-----VNSVIRGPAVIGEDCIIENSYIGPY-------------------TSIGEGVVIRDAEVE-HSIVL  308 (353)
T ss_pred             CEEECCCCEE-----eCCEEECCcEECCCCEEcCcEECCC-------------------CEECCCCEEeeeEEE-eeEEc
Confidence            3555555555     4678888899999999998887777                   677777776644442 44444


Q ss_pred             CCeEEccC------CCcccccCCCCceEEcc-CeEEecCCcEEC
Q 018622          312 KDVVIVNK------DDVQEADRPELGFYIRS-GITIIMEKATIE  348 (353)
Q Consensus       312 ~~~~i~~~------~~~~~~~~~~~~~~i~~-~~~vig~~~~i~  348 (353)
                      +++.+...      ..+++.++++.++.+.. ...++|++++|+
T Consensus       309 ~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~  352 (353)
T TIGR01208       309 DESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE  352 (353)
T ss_pred             CCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCceec
Confidence            44444332      22334444444444432 123455555553

Alternate name: dTDP-D-glucose synthase

>PLN02739 serine acetyltransferase

Probab=98.54  E-value=2.4e-07  Score=85.72  Aligned_cols=28  Identities=14%  Similarity=0.195  Sum_probs=20.4

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEcc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~  318 (353)
                      +.||.|+.|. ++.||+++.||+|+++..
T Consensus       264 V~IGagA~IlG~V~IGd~aiIGAGSVV~k  292 (355)
T PLN02739        264 ALLGACVTILGNISIGAGAMVAAGSLVLK  292 (355)
T ss_pred             CEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence            6777777775 677777777777777764

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=98.52  E-value=3.2e-07  Score=89.81  Aligned_cols=93  Identities=17%  Similarity=0.238  Sum_probs=68.7

Q ss_pred             CCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCC----------
Q 018622          237 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK----------  306 (353)
Q Consensus       237 ~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~----------  306 (353)
                      +++.+.++.+.+|+|+++|+|+ +|.|++|++..+                   |.|+++|.|.+|++..          
T Consensus       304 ~~~~~~~~~i~~s~I~~~~~I~-~~~I~~svI~~~-------------------~~Ig~~~~I~~sii~g~~~~~~~~~~  363 (436)
T PLN02241        304 PPSKIEDCRITDSIISHGCFLR-ECKIEHSVVGLR-------------------SRIGEGVEIEDTVMMGADYYETEEEI  363 (436)
T ss_pred             CCcEecCCeEEEeEEcCCcEEc-CeEEEeeEEcCC-------------------CEECCCCEEEEeEEECCCcccccccc
Confidence            4455555666779999999999 999999987777                   8999999999887744          


Q ss_pred             ------C---CEECCCeEEccCCCcccccCCCCceEEccC-----eEEecCCcEECCC
Q 018622          307 ------N---VKIGKDVVIVNKDDVQEADRPELGFYIRSG-----ITIIMEKATIEDG  350 (353)
Q Consensus       307 ------~---~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~-----~~vig~~~~i~~g  350 (353)
                            +   +.||+++.+.+ ..+.++++||.++.|...     ..++|++++|++|
T Consensus       364 ~~~~~~~~~~~~Ig~~~~i~~-~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~  420 (436)
T PLN02241        364 ASLLAEGKVPIGIGENTKIRN-AIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSG  420 (436)
T ss_pred             ccccccCCcceEECCCCEEcc-eEecCCCEECCCcEEecccccCCccccccccEEeCC
Confidence                  2   37999988874 447777788877777522     2234555555555

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=98.51  E-value=1.2e-06  Score=76.24  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=11.2

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIV  317 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~  317 (353)
                      +.||.++.|. ++.||+++.||+++++.
T Consensus       138 v~IG~~~~I~~gv~IG~~~vIgagsvV~  165 (203)
T PRK09527        138 VWIGSHVVINPGVTIGDNSVIGAGSVVT  165 (203)
T ss_pred             cEECCCCEEcCCCEECCCCEECCCCEEc
Confidence            3344443333 34444444444444443

>TIGR01172 cysE serine O-acetyltransferase

Probab=98.50  E-value=4.7e-07  Score=76.35  Aligned_cols=29  Identities=28%  Similarity=0.533  Sum_probs=21.6

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                      +.|++++.|. +++||+++.||+++++..+
T Consensus       120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~d  149 (162)
T TIGR01172       120 VMIGAGAKVLGNIEVGENAKIGANSVVLKD  149 (162)
T ss_pred             cEEcCCCEEECCcEECCCCEECCCCEECCC
Confidence            6777777776 5778888888888777653

Cysteine biosynthesis

>PRK10191 putative acyl transferase; Provisional

Probab=98.50  E-value=1.2e-06  Score=72.31  Aligned_cols=29  Identities=28%  Similarity=0.522  Sum_probs=19.5

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                      +.||+++.+. ++.||+++.||+++++..+
T Consensus        99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~d  128 (146)
T PRK10191         99 VELGANVIILGDITIGNNVTVGAGSVVLDS  128 (146)
T ss_pred             cEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence            6666666665 5777777777777766653

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=98.45  E-value=2.7e-06  Score=82.28  Aligned_cols=95  Identities=21%  Similarity=0.306  Sum_probs=65.0

Q ss_pred             CeEEEEeCCeE-EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC---------CeeEEEeCCCcccccc
Q 018622           41 ENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG---------RIAQFAEKPSGANLKA  110 (353)
Q Consensus        41 ~~flV~~gD~i-~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g---------~V~~~~ekp~~~~~~~  110 (353)
                      .-++|+.+|.+ ...+ ...+. +  .+..++++..+.+.+..++.|+..+|+++         .+.+|..||..++...
T Consensus        54 pGv~V~s~D~vl~~~~-~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~  129 (414)
T PF07959_consen   54 PGVLVCSGDMVLSVPD-DPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA  129 (414)
T ss_pred             cceEEEecccccccCc-cccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh
Confidence            35899999944 4333 22332 2  23677888888766556889999999988         8999999998765310


Q ss_pred             ccccccccCCCccccccCCcccceeeEEecHHHHHHHHH
Q 018622          111 MQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR  149 (353)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~  149 (353)
                                .......+..+.++|+..|+.+..+.++.
T Consensus       130 ----------~~av~~~~~~~ldsG~~~~s~~~~e~L~~  158 (414)
T PF07959_consen  130 ----------SGAVLPDGNVLLDSGIVFFSSKAVESLLY  158 (414)
T ss_pred             ----------CCcccCCCcccccccceeccHHHHHHHHH
Confidence                      01111234567899999999988876654

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=98.45  E-value=2.3e-06  Score=72.66  Aligned_cols=35  Identities=14%  Similarity=0.375  Sum_probs=21.9

Q ss_pred             ceEECCCcEEC-ceEE---eeeEEcCCcEECCCCEEece
Q 018622          232 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDT  266 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v---~~~~ig~~~~ig~~~~i~~~  266 (353)
                      ++.||++|.|+ ++.+   .+..||+++.|+++|.|..+
T Consensus        62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~  100 (169)
T cd03357          62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTA  100 (169)
T ss_pred             cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeC
Confidence            34555555555 3333   25688888888888888643

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=98.45  E-value=1.9e-06  Score=78.09  Aligned_cols=72  Identities=14%  Similarity=0.153  Sum_probs=36.5

Q ss_pred             ceEECCCcEECceEEeeeEEc--CCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCC---eEEcceEeCC
Q 018622          232 DAIISHGCFLRECTVEHSIVG--ERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN---TKIRNCIIDK  306 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig--~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~---~~i~~~iig~  306 (353)
                      ++.|+++|.|+.    ++.|+  .+++||++|.|++.+.+..+                  +++|..   +...+.+||+
T Consensus       141 gidI~~~a~IG~----g~~I~h~~givIG~~a~IGdnv~I~~~------------------VtiGg~~~~~~~~~p~IGd  198 (273)
T PRK11132        141 QVDIHPAAKIGR----GIMLDHATGIVIGETAVIENDVSILQS------------------VTLGGTGKTSGDRHPKIRE  198 (273)
T ss_pred             eeEecCcceECC----CeEEcCCCCeEECCCCEECCCCEEcCC------------------cEEecCcccCCCcCCEECC
Confidence            466666666662    23333  34566666666665544443                  444421   1122456666


Q ss_pred             CCEECCCeEEccCCCcccc
Q 018622          307 NVKIGKDVVIVNKDDVQEA  325 (353)
Q Consensus       307 ~~~Ig~~~~i~~~~~~~~~  325 (353)
                      +|.||+++.|.++..+++.
T Consensus       199 ~V~IGaga~Ilggv~IG~~  217 (273)
T PRK11132        199 GVMIGAGAKILGNIEVGRG  217 (273)
T ss_pred             CcEEcCCCEEcCCCEECCC
Confidence            6666666666554333333

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=98.45  E-value=1.1e-06  Score=74.62  Aligned_cols=9  Identities=11%  Similarity=0.541  Sum_probs=3.5

Q ss_pred             eEEcCCcEE
Q 018622          249 SIVGERSRL  257 (353)
Q Consensus       249 ~~ig~~~~i  257 (353)
                      +.|+++|.|
T Consensus        89 v~Ig~~~~I   97 (169)
T cd03357          89 VLIGPNVQI   97 (169)
T ss_pred             CEECCCCEE
Confidence            333333333

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PRK10191 putative acyl transferase; Provisional

Probab=98.45  E-value=6.1e-07  Score=73.97  Aligned_cols=36  Identities=11%  Similarity=0.172  Sum_probs=16.7

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEEC
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG  270 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~  270 (353)
                      +.||+++.|+++  .+++|++++.||+++.|++.+.++
T Consensus        48 a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG   83 (146)
T PRK10191         48 ATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIG   83 (146)
T ss_pred             CEECCCeEECCC--CeEEECCCcEECCCCEECCCCEEC
Confidence            344444544421  234445555555555555444443

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.44  E-value=1.1e-06  Score=79.43  Aligned_cols=25  Identities=8%  Similarity=0.222  Sum_probs=9.9

Q ss_pred             eEeCCCeEEcceEeCCCCEECCCeEE
Q 018622          291 IGVGRNTKIRNCIIDKNVKIGKDVVI  316 (353)
Q Consensus       291 ~~ig~~~~i~~~iig~~~~Ig~~~~i  316 (353)
                      |.||.||.| +..||++|+||+++++
T Consensus       232 ~~IGagA~I-GI~IGd~~VVGAGaVV  256 (319)
T TIGR03535       232 CLLGANSGL-GISLGDDCVVEAGLYV  256 (319)
T ss_pred             cEECCCCEE-CeEECCCCEECCCCEE
Confidence            333333333 3334444444444333

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK10502 putative acyl transferase; Provisional

Probab=98.43  E-value=9.7e-07  Score=75.91  Aligned_cols=38  Identities=16%  Similarity=0.192  Sum_probs=23.4

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEec--eEEECCc
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKD--TVMLGAD  272 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~--~v~~~~~  272 (353)
                      +.|++++.|...  .+..||+++.|+++|.|.+  .+.++++
T Consensus        58 ~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~   97 (182)
T PRK10502         58 VVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAH   97 (182)
T ss_pred             cEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCC
Confidence            444444444310  2588999999999998874  3444443

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=98.42  E-value=1.3e-06  Score=75.08  Aligned_cols=34  Identities=15%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             ceEECCCcEEC-ceEEe---eeEEcCCcEECCCCEEec
Q 018622          232 DAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKD  265 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~---~~~ig~~~~ig~~~~i~~  265 (353)
                      ++.||+++.|+ ++.+.   ...||++|.|+++|.|..
T Consensus        73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t  110 (183)
T PRK10092         73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYT  110 (183)
T ss_pred             CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEc
Confidence            45555555555 33332   237777777777777763

>PLN02357 serine acetyltransferase

Probab=98.41  E-value=2.3e-06  Score=79.88  Aligned_cols=53  Identities=11%  Similarity=0.334  Sum_probs=34.0

Q ss_pred             eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEcc
Q 018622          248 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~  318 (353)
                      +++||++|.||.+|.|.+.+.++++                  +.||.++.|...+-...+.+|.-+.+.+
T Consensus       278 ~piIGd~V~IGagA~IlggV~IGdg------------------a~IGAgSVV~~dVP~~~~v~G~PArvv~  330 (360)
T PLN02357        278 HPKIGDGVLIGAGTCILGNITIGEG------------------AKIGAGSVVLKDVPPRTTAVGNPARLIG  330 (360)
T ss_pred             CceeCCCeEECCceEEECCeEECCC------------------CEECCCCEECcccCCCcEEECCCeEEEc
Confidence            3677777777777777666666654                  6777777776655555555565555544

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.39  E-value=1.9e-06  Score=67.33  Aligned_cols=32  Identities=16%  Similarity=0.343  Sum_probs=19.6

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEec
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKD  265 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~  265 (353)
                      ++.|+++|+|..  .....||++|.|++++.|..
T Consensus         9 ~~~I~~~~~i~~--~~~i~IG~~~~I~~~~~I~~   40 (107)
T cd05825           9 NSWIGEGVWIYN--LAPVTIGSDACISQGAYLCT   40 (107)
T ss_pred             CCEECCCCEEee--CCceEECCCCEECCCeEeec
Confidence            345555555541  02467888888888887754

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>PLN02694 serine O-acetyltransferase

Probab=98.37  E-value=1.9e-06  Score=78.26  Aligned_cols=14  Identities=14%  Similarity=0.387  Sum_probs=5.6

Q ss_pred             EEcCCcEECCCCEE
Q 018622          250 IVGERSRLDYGVEL  263 (353)
Q Consensus       250 ~ig~~~~ig~~~~i  263 (353)
                      +||++|.||.+|.|
T Consensus       214 iIGd~V~IGagA~I  227 (294)
T PLN02694        214 KIGDGVLIGAGATI  227 (294)
T ss_pred             EECCCeEECCeeEE
Confidence            34444444444333

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=98.37  E-value=3.9e-06  Score=72.09  Aligned_cols=8  Identities=25%  Similarity=0.285  Sum_probs=3.6

Q ss_pred             ECCCcEEC
Q 018622          235 ISHGCFLR  242 (353)
Q Consensus       235 ig~~~~i~  242 (353)
                      +|.++.|+
T Consensus        70 ~g~~i~iG   77 (183)
T PRK10092         70 YGYNIFLG   77 (183)
T ss_pred             ecCCcEEc
Confidence            34444444

>PLN02739 serine acetyltransferase

Probab=98.35  E-value=2.3e-06  Score=79.30  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=19.9

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECC
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA  271 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~  271 (353)
                      +.||+++.|.++  ..++||++|.||++|.|..++.+++
T Consensus       212 A~IG~Gv~IdHg--~GVVIG~~avIGdnv~I~~gVTIGg  248 (355)
T PLN02739        212 ARIGKGILLDHG--TGVVIGETAVIGDRVSILHGVTLGG  248 (355)
T ss_pred             ccccCceEEecC--CceEECCCCEECCCCEEcCCceeCC
Confidence            344444444411  2456666666666666666665554

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=98.30  E-value=3.9e-06  Score=72.79  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=32.4

Q ss_pred             CCCCCeEEec-eee---eceEECCCcEECceEEeeeEEcCCcEECCCCEEe--ceEEECCc
Q 018622          218 RFLPPTKIDN-CRI---KDAIISHGCFLRECTVEHSIVGERSRLDYGVELK--DTVMLGAD  272 (353)
Q Consensus       218 ~i~~~~~i~~-~~i---~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~--~~v~~~~~  272 (353)
                      .+.+|-++.. ..+   +++.++.+|++.--......||+++.|++++.|.  ..+.++++
T Consensus        31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~   91 (192)
T PRK09677         31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRD   91 (192)
T ss_pred             EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCC
Confidence            3455655542 222   2566777776641011356888888888888887  35666654

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.27  E-value=3.7e-06  Score=64.95  Aligned_cols=28  Identities=39%  Similarity=0.617  Sum_probs=20.0

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEcc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~  318 (353)
                      +.|++++.+. ++.|++++.|++++.+..
T Consensus        61 ~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~   89 (101)
T cd03354          61 VVIGAGAKILGNITIGDNVKIGANAVVTK   89 (101)
T ss_pred             cEEcCCCEEECcCEECCCCEECCCCEECc
Confidence            6777777776 477777777777777764

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=98.26  E-value=1.1e-05  Score=84.43  Aligned_cols=216  Identities=16%  Similarity=0.160  Sum_probs=137.0

Q ss_pred             eEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC--CCeeEEEeCCCccccccccccccccC
Q 018622           42 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM--GRIAQFAEKPSGANLKAMQVDTSLLG  119 (353)
Q Consensus        42 ~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~--g~V~~~~ekp~~~~~~~~~~~~~~~~  119 (353)
                      .++|+.||++..++-. +.+   -..++++......+.+..++.|++..|.+  +++..|..||..++...+.       
T Consensus       154 g~li~~gDv~~~f~~~-~~~---~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~-------  222 (974)
T PRK13412        154 HTLIASGDVYIRSEQP-LQD---IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS-------  222 (974)
T ss_pred             ceEEEecchhhhcccc-ccC---CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-------
Confidence            7999999988766521 111   23466777666666555688999999887  6899999999876532211       


Q ss_pred             CCccccccCCcccceeeEEecHHHHHHHHHhhCC------CCCchhhhhhhhhh----------hcCcEEEEEe-cceEe
Q 018622          120 FSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP------TSNDFGSEIIPAAI----------MEHDVQAYIF-RDYWE  182 (353)
Q Consensus       120 ~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~------~~~~~~~d~l~~l~----------~~~~i~~~~~-~g~w~  182 (353)
                            +.+..+.++|+|+|+.+..+.++.....      ...|+..|++..|-          +..++..... .+.++
T Consensus       223 ------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~  296 (974)
T PRK13412        223 ------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFY  296 (974)
T ss_pred             ------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeE
Confidence                  2245799999999999988776654211      12344445554432          2245555555 45899


Q ss_pred             EcCCHHHHHHHHHhhccC---CCcccccCCCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceE-EeeeEEcCCcEE
Q 018622          183 DIGTIKSFYEANMALTKE---SPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECT-VEHSIVGERSRL  257 (353)
Q Consensus       183 dIgtp~~y~~a~~~ll~~---~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~-v~~~~ig~~~~i  257 (353)
                      .+||-..|+.....+.+.   ++.  +++      .++.-.|.     +.+.++++++++.++ +.. |++|.|+.+++|
T Consensus       297 H~GTs~E~l~~~~~~q~~~~~~~~--i~~------~~~~~~~~-----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~i  363 (974)
T PRK13412        297 HYGTSRELISSTLAVQNLVTDQRR--IMH------RKVKPHPA-----MFVQNAVLSGKLTAENATLWIENSHVGEGWKL  363 (974)
T ss_pred             EecCcHHHhcCchhHHHHhhhhhh--hhc------cccCCCCc-----eEEEeeEecCCcccCCCeEEEEeeEecCCeEE
Confidence            999998888543332221   111  111      11111121     234578888888888 333 688999999999


Q ss_pred             CCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeC
Q 018622          258 DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID  305 (353)
Q Consensus       258 g~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig  305 (353)
                      |.+|+|.+....+-.                  ..|.++..|...=++
T Consensus       364 g~~~Iisgv~~~~~~------------------~~vP~~~ci~~vpl~  393 (974)
T PRK13412        364 ASRSIITGVPENSWN------------------LDLPEGVCIDVVPVG  393 (974)
T ss_pred             cCCcEEecccccccc------------------eecCCCcEEEEEEcC
Confidence            999999888543321                  567777777655553

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.22  E-value=1.9e-05  Score=61.74  Aligned_cols=15  Identities=7%  Similarity=0.082  Sum_probs=6.7

Q ss_pred             cEECCCCEEeceEEE
Q 018622          255 SRLDYGVELKDTVML  269 (353)
Q Consensus       255 ~~ig~~~~i~~~v~~  269 (353)
                      ++||++|.|...+.+
T Consensus        24 i~IG~~~~I~~~~~I   38 (107)
T cd05825          24 VTIGSDACISQGAYL   38 (107)
T ss_pred             eEECCCCEECCCeEe
Confidence            444444444444433

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.14  E-value=2.6e-06  Score=77.41  Aligned_cols=90  Identities=18%  Similarity=0.158  Sum_probs=66.8

Q ss_pred             eceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEE
Q 018622          231 KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI  310 (353)
Q Consensus       231 ~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~I  310 (353)
                      .+.++.+-+.+|    .+|.||+++.||++|+|++.|.+.+          |++.+.   ..++..+.|..+++|.++.|
T Consensus       263 ~nvlvd~~~~iG----~~C~Ig~~vvIG~r~~i~~gV~l~~----------s~il~~---~~~~~~s~i~s~ivg~~~~I  325 (371)
T KOG1322|consen  263 GNVLVDSIASIG----ENCSIGPNVVIGPRVRIEDGVRLQD----------STILGA---DYYETHSEISSSIVGWNVPI  325 (371)
T ss_pred             ccEeeccccccC----CccEECCCceECCCcEecCceEEEe----------eEEEcc---ceechhHHHHhhhccccccc
Confidence            456666666666    5799999999999999999999987          333333   46677777778999999999


Q ss_pred             CCCeEEccCCCcccccCCCCceEEccC
Q 018622          311 GKDVVIVNKDDVQEADRPELGFYIRSG  337 (353)
Q Consensus       311 g~~~~i~~~~~~~~~~~~~~~~~i~~~  337 (353)
                      |.++.+.+.+.++++..+.+.-++.++
T Consensus       326 G~~~~id~~a~lG~nV~V~d~~~vn~g  352 (371)
T KOG1322|consen  326 GIWARIDKNAVLGKNVIVADEDYVNEG  352 (371)
T ss_pred             cCceEEecccEeccceEEecccccccc
Confidence            999999887655555555554454333

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.14  E-value=1.7e-05  Score=61.88  Aligned_cols=11  Identities=9%  Similarity=0.235  Sum_probs=6.1

Q ss_pred             ceEECCCcEEC
Q 018622          232 DAIISHGCFLR  242 (353)
Q Consensus       232 ~~~ig~~~~i~  242 (353)
                      ++.||++|.|+
T Consensus        21 ~v~IG~~~~Ig   31 (109)
T cd04647          21 GITIGDNVLIG   31 (109)
T ss_pred             ceEECCCCEEC
Confidence            35555555555

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.13  E-value=1.4e-05  Score=67.84  Aligned_cols=90  Identities=13%  Similarity=0.245  Sum_probs=59.7

Q ss_pred             CCceecCCCCCCCeEEec---eee-eceEECCCcEEC-ceEEe---------eeEEcCCcEECCCCEEeceEEECCcccc
Q 018622          210 KTPFYTSPRFLPPTKIDN---CRI-KDAIISHGCFLR-ECTVE---------HSIVGERSRLDYGVELKDTVMLGADYYQ  275 (353)
Q Consensus       210 ~~~i~~~~~i~~~~~i~~---~~i-~~~~ig~~~~i~-~~~v~---------~~~ig~~~~ig~~~~i~~~v~~~~~~~~  275 (353)
                      .-.|++.+.|+++..|..   ..| +.+.||++|.|. +.++.         +-.||+++.||++|.|=+.+.++++   
T Consensus        67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~---  143 (194)
T COG1045          67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDN---  143 (194)
T ss_pred             ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCC---
Confidence            455677777777777742   223 246666666666 34442         4489999999999998888888876   


Q ss_pred             chhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEc
Q 018622          276 TESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV  317 (353)
Q Consensus       276 ~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~  317 (353)
                                     ++||+||.+...+=.+-+.+|--+.+.
T Consensus       144 ---------------akIGA~sVVlkdVP~~~tvvGvPArii  170 (194)
T COG1045         144 ---------------AKIGAGSVVLKDVPPNATVVGVPARVI  170 (194)
T ss_pred             ---------------CEECCCceEccCCCCCceEecCcceEe
Confidence                           788888888765444444445544443

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.10  E-value=2.3e-05  Score=68.51  Aligned_cols=142  Identities=11%  Similarity=0.126  Sum_probs=84.8

Q ss_pred             cccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHH-HHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622           19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYM-DFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA   97 (353)
Q Consensus        19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~-~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~   97 (353)
                      .+|+.+|..|++++.       +.|++++||+++...+- .+++    ......++ ...+......-.....+++|++.
T Consensus        83 tN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e~l~~----a~~~~li~-d~~~~~~~~~ea~kv~~e~G~i~  150 (239)
T COG1213          83 TNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILERLLE----APGEGLIV-DRRPRYVGVEEATKVKDEGGRIV  150 (239)
T ss_pred             CCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHHHHHh----CcCCcEEE-eccccccccCceeEEEecCCEEe
Confidence            357999999999997       67999999999987753 3333    22222332 22221111112223344778888


Q ss_pred             EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEEEe
Q 018622           98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIF  177 (353)
Q Consensus        98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~~~  177 (353)
                      .+..+-..                       ..-.++|++.|+++.|....+-.... ..   ..+.++.+...+.+-..
T Consensus       151 ~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~~~e~-~~---~~~~~~~~~~~~~~~~~  203 (239)
T COG1213         151 EIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYELLVER-SE---YDYREVEKEAGLPFTEV  203 (239)
T ss_pred             hhcCCccc-----------------------ccceeeeeEEechHHHHHHHHHHhhh-hh---HHHHHHHHHhCCceEEe
Confidence            77654331                       24568999999999886543322111 11   11222333322222222


Q ss_pred             -----cceEeEcCCHHHHHHHHHhhcc
Q 018622          178 -----RDYWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       178 -----~g~w~dIgtp~~y~~a~~~ll~  199 (353)
                           ...|++|.|||++.+|.+.+..
T Consensus       204 di~~~g~~w~EVDtpeDl~~ar~~~~~  230 (239)
T COG1213         204 DIHVDGLFWMEVDTPEDLERARKYLVP  230 (239)
T ss_pred             eccccCceeEecCCHHHHHHHHHHHHH
Confidence                 3589999999999999987764

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.07  E-value=6.2e-06  Score=70.84  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=17.7

Q ss_pred             eeEEcCCcEECCCCEEeceEEECC
Q 018622          248 HSIVGERSRLDYGVELKDTVMLGA  271 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i~~~v~~~~  271 (353)
                      ..+||+-++||.++.|-+.+.+++
T Consensus       168 gvvigeTAvvg~~vSilH~Vtlgg  191 (269)
T KOG4750|consen  168 GVVIGETAVVGDNVSILHPVTLGG  191 (269)
T ss_pred             ceeecceeEeccceeeecceeecc
Confidence            467777777777777777777765

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.05  E-value=2.5e-05  Score=64.53  Aligned_cols=19  Identities=16%  Similarity=0.204  Sum_probs=13.9

Q ss_pred             eeEEcCCcEECCCCEEece
Q 018622          248 HSIVGERSRLDYGVELKDT  266 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i~~~  266 (353)
                      .+.||++|.|++++.|...
T Consensus        21 ~i~IG~~~~I~~~v~i~~~   39 (145)
T cd03349          21 KLSIGKFCSIAPGVKIGLG   39 (145)
T ss_pred             CeEECCCCEECCCCEECCC
Confidence            5777777777777777655

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=97.96  E-value=2.6e-05  Score=67.35  Aligned_cols=35  Identities=17%  Similarity=0.366  Sum_probs=20.5

Q ss_pred             ceEECCCcEEC-ceEE---eeeEEcCCcEECCCCEEece
Q 018622          232 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDT  266 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v---~~~~ig~~~~ig~~~~i~~~  266 (353)
                      ...+|.+|.++ ++.+   .+..||+++.+++++.|...
T Consensus        67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~  105 (190)
T COG0110          67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN  105 (190)
T ss_pred             ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC
Confidence            45666666666 3332   24556666666666666654

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=97.88  E-value=2.1e-05  Score=62.68  Aligned_cols=36  Identities=11%  Similarity=0.272  Sum_probs=23.2

Q ss_pred             ceEECCCcEEC-ceEEe-------------eeEEcCCcEECCCCEEeceE
Q 018622          232 DAIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELKDTV  267 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~-------------~~~ig~~~~ig~~~~i~~~v  267 (353)
                      ++.+|..|++. .+.|+             +..||++++|+++|++...-
T Consensus        54 nVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAq  103 (184)
T KOG3121|consen   54 NVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQ  103 (184)
T ss_pred             cceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhh
Confidence            46666666666 44442             56778888887777765443

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=97.81  E-value=2.6e-05  Score=62.68  Aligned_cols=108  Identities=13%  Similarity=0.325  Sum_probs=70.0

Q ss_pred             cCCCCCCCeEEe-ceeee-ceEECCCcEECc-eEE----eeeEEcCCcEECCCCEEece-------------EEEC-Ccc
Q 018622          215 TSPRFLPPTKID-NCRIK-DAIISHGCFLRE-CTV----EHSIVGERSRLDYGVELKDT-------------VMLG-ADY  273 (353)
Q Consensus       215 ~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~~-~~v----~~~~ig~~~~ig~~~~i~~~-------------v~~~-~~~  273 (353)
                      .++.|.|.+.+. ++.++ +++|+++|+|.. +++    ..-+||+++.|++.+.|.+.             .+++ .+.
T Consensus         7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~Nv   86 (190)
T KOG4042|consen    7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNV   86 (190)
T ss_pred             ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccce
Confidence            456777888875 47775 689999999984 443    35799999999999988872             2222 222


Q ss_pred             ccchhH-HHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccc
Q 018622          274 YQTESE-IASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEA  325 (353)
Q Consensus       274 ~~~~~~-~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~  325 (353)
                      +.-.+- ....+|++   .+|+..+++. ++.+.++|.||+.|.+-....+++.
T Consensus        87 FeVgc~s~A~kvGd~---NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpen  137 (190)
T KOG4042|consen   87 FEVGCKSSAKKVGDR---NVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPEN  137 (190)
T ss_pred             EEeechhhhhhhcCc---ceEeeeeEecCCcEEcCCceeccceEEecccccCCc
Confidence            222221 13455666   5677777776 6777777777777777665444433

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=97.73  E-value=8.6e-05  Score=76.61  Aligned_cols=35  Identities=17%  Similarity=0.119  Sum_probs=18.6

Q ss_pred             ceEECCCcEECceEE---eeeEEcCCcEECCCCEEece
Q 018622          232 DAIISHGCFLRECTV---EHSIVGERSRLDYGVELKDT  266 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v---~~~~ig~~~~ig~~~~i~~~  266 (353)
                      ++.||+||.|....+   ....||++|.|+++|.+.+.
T Consensus       112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~  149 (695)
T TIGR02353       112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGY  149 (695)
T ss_pred             CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcc
Confidence            345555555552111   23456666666666666543

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=97.72  E-value=0.00012  Score=75.69  Aligned_cols=34  Identities=18%  Similarity=0.419  Sum_probs=22.4

Q ss_pred             ceEECCCcEECceEE---eeeEEcCCcEECCCCEEec
Q 018622          232 DAIISHGCFLRECTV---EHSIVGERSRLDYGVELKD  265 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v---~~~~ig~~~~ig~~~~i~~  265 (353)
                      ++.||++|.|+...+   .-+.||++|.|+++|.|+.
T Consensus       597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~  633 (695)
T TIGR02353       597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQT  633 (695)
T ss_pred             CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEe
Confidence            456666666663211   1268888888888888875

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=97.68  E-value=0.00045  Score=60.99  Aligned_cols=140  Identities=17%  Similarity=0.159  Sum_probs=88.4

Q ss_pred             cccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC-C
Q 018622           19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG-R   95 (353)
Q Consensus        19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g-~   95 (353)
                      .|+.++++.+..++++. ....+.|+++.||.  +...++.++++.+.+.++++++.+.+..+  ...++.+.. ++| .
T Consensus        78 ~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~  153 (223)
T cd02513          78 ASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHR--FPWRALGLD-DNGLE  153 (223)
T ss_pred             CCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCc--CcHHheeec-cCCce
Confidence            47899999999888620 01136899999999  55678999999998888887777766543  233333332 222 2


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY  175 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~  175 (353)
                      +..+.++... ..+.          .|     .....++|+|+++++.|....        .    .+     ..++..|
T Consensus       154 ~~~~~~~~~~-~~q~----------~~-----~~~~~n~~~y~~~~~~~~~~~--------~----~~-----g~~~~~~  200 (223)
T cd02513         154 PVNYPEDKRT-RRQD----------LP-----PAYHENGAIYIAKREALLESN--------S----FF-----GGKTGPY  200 (223)
T ss_pred             eccCcccccC-CcCC----------Ch-----hHeeECCEEEEEEHHHHHhcC--------C----cc-----CCCeEEE
Confidence            2222221110 0000          00     135678899999999875310        1    01     4577777


Q ss_pred             Eecc-eEeEcCCHHHHHHHHH
Q 018622          176 IFRD-YWEDIGTIKSFYEANM  195 (353)
Q Consensus       176 ~~~g-~w~dIgtp~~y~~a~~  195 (353)
                      .++. .-+||.+++|+..|..
T Consensus       201 ~~~~~~~~dI~~~~D~~~ae~  221 (223)
T cd02513         201 EMPRERSIDIDTEEDFELAEA  221 (223)
T ss_pred             EeCccceeCCCCHHHHHHHHH
Confidence            7765 5899999999988764

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=97.32  E-value=0.0018  Score=57.01  Aligned_cols=136  Identities=15%  Similarity=0.063  Sum_probs=87.7

Q ss_pred             cHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeE
Q 018622           21 TADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ   98 (353)
Q Consensus        21 T~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~   98 (353)
                      ..++++.+...++     +.+.++++.||.  +....+.++++.+++.+  +++++.+..      .++..+|++|.+..
T Consensus        77 ~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~------~~v~~~~~~g~~~~  143 (217)
T TIGR00453        77 RQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKAG--AAILALPVA------DTLKRVEADGFIVE  143 (217)
T ss_pred             HHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--cEEEeEecc------ceEEEEcCCCceee
Confidence            3578888887762     137899999998  44566889998876543  444444432      34555666677877


Q ss_pred             EEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhh-cCcEEEEEe
Q 018622           99 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIM-EHDVQAYIF  177 (353)
Q Consensus        99 ~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~-~~~i~~~~~  177 (353)
                      +.|+..                        ...+++ .|+|++..|..++......... ..|....+.+ ..++..+..
T Consensus       144 ~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~~~-~~d~~~~~~~~g~~i~~~~~  197 (217)
T TIGR00453       144 TVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEEGFE-ITDDASAVEKLGGKVALVEG  197 (217)
T ss_pred             cCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhcCCC-CCcHHHHHHHcCCCeEEEec
Confidence            766421                        134455 6999999998776543222222 2333333332 357777777


Q ss_pred             cceEeEcCCHHHHHHHHH
Q 018622          178 RDYWEDIGTIKSFYEANM  195 (353)
Q Consensus       178 ~g~w~dIgtp~~y~~a~~  195 (353)
                      +..+++|++|+||..|..
T Consensus       198 ~~~~~~I~~~~Dl~~ae~  215 (217)
T TIGR00453       198 DALNFKITTPEDLALAEA  215 (217)
T ss_pred             CccccccCCHHHHHHHHH
Confidence            777789999999988765

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.31  E-value=0.0019  Score=56.06  Aligned_cols=57  Identities=23%  Similarity=0.376  Sum_probs=34.2

Q ss_pred             EEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          245 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       245 ~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                      .|...++..+++|+.||.+.++++..++                  .+||++++|. .-++..+-.||+++.|.++
T Consensus        47 ~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~gdLdig~dV~Iegg  104 (277)
T COG4801          47 RIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVIGDLDIGADVIIEGG  104 (277)
T ss_pred             EEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEecccccccceEEecC
Confidence            3334555566666666666666666665                  5666666666 3445555666666666554

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=97.30  E-value=0.00019  Score=57.80  Aligned_cols=90  Identities=8%  Similarity=0.150  Sum_probs=48.3

Q ss_pred             CceecCCCCCCCeEEec-eee----eceEECCCcEEC-ceEEee--------------eEEcCCcEECCCCEEeceEEEC
Q 018622          211 TPFYTSPRFLPPTKIDN-CRI----KDAIISHGCFLR-ECTVEH--------------SIVGERSRLDYGVELKDTVMLG  270 (353)
Q Consensus       211 ~~i~~~~~i~~~~~i~~-~~i----~~~~ig~~~~i~-~~~v~~--------------~~ig~~~~ig~~~~i~~~v~~~  270 (353)
                      +.+.+.+.+.+++.+++ +.+    ..-+||+||.|+ .+.|.|              -+||...+..-+|..+..-+.+
T Consensus        21 s~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd  100 (190)
T KOG4042|consen   21 SDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGD  100 (190)
T ss_pred             cccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcC
Confidence            34445555555555554 333    256777777777 344432              2555555555555544444444


Q ss_pred             CccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCC
Q 018622          271 ADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKD  313 (353)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~  313 (353)
                      +++++.+             +++|+|+.+. +|++|..|+|-..
T Consensus       101 ~NViesk-------------ayvg~gv~vssgC~vGA~c~v~~~  131 (190)
T KOG4042|consen  101 RNVIESK-------------AYVGDGVSVSSGCSVGAKCTVFSH  131 (190)
T ss_pred             cceEeee-------------eEecCCcEEcCCceeccceEEecc
Confidence            4433333             5666666665 6666666665443

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.29  E-value=0.0018  Score=56.27  Aligned_cols=79  Identities=23%  Similarity=0.263  Sum_probs=58.5

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEE
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI  310 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~I  310 (353)
                      +++||+++.+.     ..++++...+|+++.|.+.++..+                   ++|+..|.+. |.+++.++.|
T Consensus        22 dViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayi   77 (277)
T COG4801          22 DVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYI   77 (277)
T ss_pred             cEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEE
Confidence            56777776654     569999999999999999999866                   8999999887 7788888888


Q ss_pred             CCCeEEccCCCcccccCCCCceEE
Q 018622          311 GKDVVIVNKDDVQEADRPELGFYI  334 (353)
Q Consensus       311 g~~~~i~~~~~~~~~~~~~~~~~i  334 (353)
                      |+++.|.+.-....+=.+|..+.|
T Consensus        78 GE~~sI~gkl~v~gdLdig~dV~I  101 (277)
T COG4801          78 GEFSSIKGKLTVIGDLDIGADVII  101 (277)
T ss_pred             eccceeeeeEEEecccccccceEE
Confidence            888887765333333333433444

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=97.28  E-value=0.0052  Score=55.12  Aligned_cols=143  Identities=10%  Similarity=0.147  Sum_probs=85.3

Q ss_pred             CCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEEEEEEEeCCCC---CCcceEEEECCCCCeeEEEeCCCcccccccccc
Q 018622           40 IENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAAVGESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVD  114 (353)
Q Consensus        40 ~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~tll~~~~~~~~---~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~  114 (353)
                      .+.++++.||.-  ....+.++++.+.+.+.+++.+..+..+..   ..+...+..|.+|+.+.|...+-......+   
T Consensus        88 ~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~---  164 (238)
T TIGR00466        88 DERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF---  164 (238)
T ss_pred             CCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc---
Confidence            356889999993  345688899887666667777777754311   122334455778888777654321100000   


Q ss_pred             ccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCch-hhhhhhhhhhcCcEEEEEecce-EeEcCCHHHH
Q 018622          115 TSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF-GSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSF  190 (353)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~-~~d~l~~l~~~~~i~~~~~~g~-w~dIgtp~~y  190 (353)
                        .....|.   ....+...|+|.|++++|..+........... .-+.|+.+-...+|.+...+.. -..++||+|+
T Consensus       165 --~~~~tpq---~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~  237 (238)
T TIGR00466       165 --AKRQTPV---GDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL  237 (238)
T ss_pred             --ccccccc---ccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence              0000111   01246689999999999987765322111111 1135665556688999888765 4599999986

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.20  E-value=0.00032  Score=42.97  Aligned_cols=13  Identities=38%  Similarity=0.598  Sum_probs=4.4

Q ss_pred             eEeCCCCEECCCe
Q 018622          302 CIIDKNVKIGKDV  314 (353)
Q Consensus       302 ~iig~~~~Ig~~~  314 (353)
                      +.||+++.|++++
T Consensus        20 ~~Ig~~~~I~~~~   32 (36)
T PF00132_consen   20 VVIGDNCVIGPGV   32 (36)
T ss_dssp             EEE-TTEEEETTE
T ss_pred             CEECCCCEEcCCC
Confidence            3333333333333

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=96.98  E-value=0.0018  Score=53.44  Aligned_cols=24  Identities=17%  Similarity=0.119  Sum_probs=15.0

Q ss_pred             eEEcCCcEECC-CCEEec-eEEECCc
Q 018622          249 SIVGERSRLDY-GVELKD-TVMLGAD  272 (353)
Q Consensus       249 ~~ig~~~~ig~-~~~i~~-~v~~~~~  272 (353)
                      ..||+++.|+. .+.+.. .+.++++
T Consensus         2 ~~iG~~s~i~~~~~~~~~~~i~IG~~   27 (145)
T cd03349           2 ISVGDYSYGSGPDCDVGGDKLSIGKF   27 (145)
T ss_pred             EEEeCceeeCCCCceEeCCCeEECCC
Confidence            46788888887 455553 4555554

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=96.96  E-value=0.00091  Score=40.92  Aligned_cols=10  Identities=10%  Similarity=0.375  Sum_probs=4.4

Q ss_pred             eEECCCcEEC
Q 018622          233 AIISHGCFLR  242 (353)
Q Consensus       233 ~~ig~~~~i~  242 (353)
                      +.|+++|.|+
T Consensus         2 ~~Ig~~~~i~   11 (36)
T PF00132_consen    2 VVIGDNVIIG   11 (36)
T ss_dssp             EEEETTEEEE
T ss_pred             CEEcCCCEEC
Confidence            3444444444

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=96.92  E-value=0.0022  Score=55.54  Aligned_cols=27  Identities=33%  Similarity=0.400  Sum_probs=16.1

Q ss_pred             CCCCceEEccCeE-----EecCCcEECCCccC
Q 018622          327 RPELGFYIRSGIT-----IIMEKATIEDGMVI  353 (353)
Q Consensus       327 ~~~~~~~i~~~~~-----vig~~~~i~~g~vv  353 (353)
                      +||+++.|+.|++     .||+|++|++|++|
T Consensus       202 ~Igd~vliGaGvtILgnV~IGegavIaAGsvV  233 (269)
T KOG4750|consen  202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVV  233 (269)
T ss_pred             cccCCeEEccccEEeCCeeECCCcEEeccceE
Confidence            3444444444433     36888888888875

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=96.91  E-value=0.007  Score=53.71  Aligned_cols=140  Identities=16%  Similarity=0.066  Sum_probs=86.0

Q ss_pred             ccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622           20 GTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA   97 (353)
Q Consensus        20 GT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~   97 (353)
                      +.+++++.+...+.+     .+.++++.||.  +....++++++.+.+.+  ..++..+..+    .+..+  +++|.+.
T Consensus        81 ~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~----~~~~v--~~~g~~~  147 (227)
T PRK00155         81 ERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVKD----TIKRS--DDGGGIV  147 (227)
T ss_pred             hHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEeccc----cEEEE--cCCCcee
Confidence            358899999887742     36789999997  34567899999876654  3344444332    13333  4556665


Q ss_pred             EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhh-cCcEEEEE
Q 018622           98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIM-EHDVQAYI  176 (353)
Q Consensus        98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~-~~~i~~~~  176 (353)
                      ++.++..                        .....+ .|+|+.+.|..+++...... .+..|....+.+ ..++..+.
T Consensus       148 ~~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~-~~~~d~~~~~~~~~~~i~~~~  201 (227)
T PRK00155        148 DTPDRSG------------------------LWAAQT-PQGFRIELLREALARALAEG-KTITDDASAVERLGKPVRLVE  201 (227)
T ss_pred             ecCChHH------------------------heeeeC-CccchHHHHHHHHHHHHhcC-CCcCcHHHHHHHcCCCeEEEe
Confidence            5432110                        122333 89999999987776432211 122333332222 24677777


Q ss_pred             ecceEeEcCCHHHHHHHHHhhc
Q 018622          177 FRDYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       177 ~~g~w~dIgtp~~y~~a~~~ll  198 (353)
                      .+..+++|+||+||..|...+.
T Consensus       202 ~~~~~~~Idt~~Dl~~ae~~~~  223 (227)
T PRK00155        202 GRYDNIKITTPEDLALAEAILK  223 (227)
T ss_pred             cCcccccCCCHHHHHHHHHHHH
Confidence            6767889999999999876554

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=96.79  E-value=0.007  Score=53.18  Aligned_cols=136  Identities=15%  Similarity=0.072  Sum_probs=87.0

Q ss_pred             ccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622           20 GTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA   97 (353)
Q Consensus        20 GT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~   97 (353)
                      +.+++++.+...+++   ...+.++++.||.  +....++++++.+.+.++  .+...+...      ++...|++|.+.
T Consensus        79 ~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~~------~~~~~~~~g~~~  147 (218)
T cd02516          79 TRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVTD------TIKRVDDDGVVV  147 (218)
T ss_pred             HHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEeccc------cEEEecCCCcee
Confidence            347889999888741   1246789999997  345668999998865543  333333322      223456778888


Q ss_pred             EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc-CcEEEEE
Q 018622           98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQAYI  176 (353)
Q Consensus        98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~-~~i~~~~  176 (353)
                      .+.|...                        ...+.++ ++|+.+.|..++...... .-+.+|...-+.+. .++..+.
T Consensus       148 ~~~~r~~------------------------~~~~~~P-~~f~~~~~~~~~~~~~~~-~~~~td~~~~~~~~~~~v~~v~  201 (218)
T cd02516         148 ETLDREK------------------------LWAAQTP-QAFRLDLLLKAHRQASEE-GEEFTDDASLVEAAGGKVALVE  201 (218)
T ss_pred             ecCChHH------------------------hhhhcCC-CcccHHHHHHHHHHHHhc-CCCcCcHHHHHHHcCCCeEEEe
Confidence            8876422                        2467778 999999998887654322 22234443333332 4677766


Q ss_pred             ecceEeEcCCHHHHHH
Q 018622          177 FRDYWEDIGTIKSFYE  192 (353)
Q Consensus       177 ~~g~w~dIgtp~~y~~  192 (353)
                      -+..-+||.||++|..
T Consensus       202 ~~~~~~~i~t~~dl~~  217 (218)
T cd02516         202 GSEDNIKITTPEDLAL  217 (218)
T ss_pred             cCcccccCCCHHHHhh
Confidence            6556679999999953

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=96.76  E-value=0.038  Score=49.00  Aligned_cols=141  Identities=12%  Similarity=0.166  Sum_probs=90.9

Q ss_pred             ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE--ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~--~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      ..|+.++++++...+++  ..+.+.++++.+|.-+  ..++.++++.+.+.+++..+.+.+...  ...+. ...+++|+
T Consensus        75 ~~~~~~si~~~l~~l~~--~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~--~~~~~-~~~~~~g~  149 (222)
T TIGR03584        75 FTGTAPVVKHAIEELKL--QKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAF--PIQRA-FKLKENGG  149 (222)
T ss_pred             CCCchHHHHHHHHHHhh--cCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCC--ChHHh-eEECCCCc
Confidence            45788999999988752  1124679999999944  467999999988877887777766432  12222 24445676


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY  175 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~  175 (353)
                      +..+.........+.++               .....+.++|+++++.|..   .     ..+    +     .+++..|
T Consensus       150 ~~~~~~~~~~~~rQd~~---------------~~y~~nga~y~~~~~~~~~---~-----~~~----~-----~~~~~~~  197 (222)
T TIGR03584       150 VEMFFPEHFNTRSQDLE---------------EAYHDAGQFYWGKSQAWLE---S-----GPI----F-----SPHSIPI  197 (222)
T ss_pred             EEecCCCcccCCCCCCc---------------hheeeCCeEEEEEHHHHHh---c-----CCc----c-----CCCcEEE
Confidence            65554221111111110               1246799999999998742   1     011    1     3577888


Q ss_pred             Eecc-eEeEcCCHHHHHHHHH
Q 018622          176 IFRD-YWEDIGTIKSFYEANM  195 (353)
Q Consensus       176 ~~~g-~w~dIgtp~~y~~a~~  195 (353)
                      .++. .-+||.+++|+..|..
T Consensus       198 ~m~~~~~iDID~~~D~~~ae~  218 (222)
T TIGR03584       198 VLPRHLVQDIDTLEDWERAEL  218 (222)
T ss_pred             EeCccceeCCCCHHHHHHHHH
Confidence            8765 5899999999998865

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=96.70  E-value=0.0021  Score=38.92  Aligned_cols=29  Identities=24%  Similarity=0.544  Sum_probs=11.1

Q ss_pred             EECCCcEEC-ceEEeeeEEcCCcEECCCCEE
Q 018622          234 IISHGCFLR-ECTVEHSIVGERSRLDYGVEL  263 (353)
Q Consensus       234 ~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i  263 (353)
                      .||++|.|+ ++.+ ...||++|.|+++++|
T Consensus         3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I   32 (34)
T PF14602_consen    3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVI   32 (34)
T ss_dssp             EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred             EECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence            455555555 2222 2444555555554444

...

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=96.64  E-value=0.0056  Score=52.67  Aligned_cols=19  Identities=32%  Similarity=0.414  Sum_probs=10.9

Q ss_pred             ceEeCCCCEECCCeEEccC
Q 018622          301 NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       301 ~~iig~~~~Ig~~~~i~~~  319 (353)
                      .++||++|.||+++++..+
T Consensus       124 ~v~IG~~vwIG~~a~IlpG  142 (190)
T COG0110         124 PVTIGEDVWIGAGAVILPG  142 (190)
T ss_pred             CeEECCCeEEcCccEECCC
Confidence            3556666666666655544

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=96.20  E-value=0.077  Score=46.40  Aligned_cols=165  Identities=12%  Similarity=0.158  Sum_probs=101.5

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE--ecCHHHHHHHHHHCCCcEEEEEEEeCCC-C--CCcceEEEEC
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGES-R--ASDYGLVKID   91 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~--~~dl~~~~~~h~~~~a~~tll~~~~~~~-~--~~~~g~v~~d   91 (353)
                      -+.||= .+..+...+..   .+++-++=+-||.-+  ...+.++++..+..+++|.=+..+..++ +  ..+-..+..|
T Consensus        73 h~SGTd-R~~Ev~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d  148 (247)
T COG1212          73 HQSGTD-RLAEVVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLD  148 (247)
T ss_pred             CCCccH-HHHHHHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEc
Confidence            344554 45555555542   234556667899843  3457888887777777665555554332 1  1234456688


Q ss_pred             CCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchh-hhhhhhhhhcC
Q 018622           92 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG-SEIIPAAIMEH  170 (353)
Q Consensus        92 ~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~-~d~l~~l~~~~  170 (353)
                      .+|+-+.|.-.|-...... .-        +     ...+--.|+|.|++.+|+++...........+ .+-|+-|-...
T Consensus       149 ~~g~ALYFSRs~iP~~rd~-~~--------~-----~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~  214 (247)
T COG1212         149 KEGYALYFSRAPIPYGRDN-FG--------G-----TPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGE  214 (247)
T ss_pred             CCCcEEEEEcCCCCCcccc-cC--------C-----cchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCC
Confidence            8899999976654221100 00        0     13567889999999999988765422111111 12344444558


Q ss_pred             cEEEEEecceE-eEcCCHHHHHHHHHhhcc
Q 018622          171 DVQAYIFRDYW-EDIGTIKSFYEANMALTK  199 (353)
Q Consensus       171 ~i~~~~~~g~w-~dIgtp~~y~~a~~~ll~  199 (353)
                      +|.+...+..- ..++||+|+.++.+.+.+
T Consensus       215 kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~  244 (247)
T COG1212         215 KIHVEIVKEVPSIGVDTPEDLERVRKILSN  244 (247)
T ss_pred             eeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence            99998888655 899999999998876653

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=96.19  E-value=0.063  Score=51.49  Aligned_cols=129  Identities=13%  Similarity=0.067  Sum_probs=83.1

Q ss_pred             cHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeE
Q 018622           21 TADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ   98 (353)
Q Consensus        21 T~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~   98 (353)
                      ..+++++++..++      ++.+++..||.  +....++++++..++.  ++++...++.+  +..|+...+|. ..+..
T Consensus        83 r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~D--tik~~~~tldR-~~l~~  151 (378)
T PRK09382         83 RQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVAD--TLKRANETVDR-EGLKL  151 (378)
T ss_pred             HHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEecc--CcEEeeeEcCc-ccEEE
Confidence            5678999998875      26788888885  3344578888766543  56777778766  66777656654 34543


Q ss_pred             EEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc-CcEEEEEe
Q 018622           99 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQAYIF  177 (353)
Q Consensus        99 ~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~-~~i~~~~~  177 (353)
                      + ++|+...                                 .+.+....+    ...+ .+|..+.+.+. .+|..+.-
T Consensus       152 ~-QTPQ~f~---------------------------------~~~l~~a~~----~~~~-~TDd~sl~~~~G~~V~~v~g  192 (378)
T PRK09382        152 I-QTPQLSR---------------------------------TKTLKAAAD----GRGD-FTDDSSAAEAAGGKVALVEG  192 (378)
T ss_pred             E-ECCCCCC---------------------------------HHHHHHHHh----CCCC-cccHHHHHHHcCCcEEEEEC
Confidence            3 6776431                                 111221211    1122 34555554433 57888888


Q ss_pred             cceEeEcCCHHHHHHHHHhhcc
Q 018622          178 RDYWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       178 ~g~w~dIgtp~~y~~a~~~ll~  199 (353)
                      +..|++|++|+|+..|+..+..
T Consensus       193 ~~~n~KITtpeDL~~A~~~l~~  214 (378)
T PRK09382        193 SEDLHKLTYKEDLKMADLLLSP  214 (378)
T ss_pred             CCcccCCCCHHHHHHHHHHhcc
Confidence            8999999999999999876653

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=94.95  E-value=0.23  Score=44.11  Aligned_cols=137  Identities=12%  Similarity=0.060  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHhhhhccCCCCeEEEEeCCeE-E-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeEE
Q 018622           22 ADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF   99 (353)
Q Consensus        22 ~~al~~a~~~i~~~~~~~~~~flV~~gD~i-~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~   99 (353)
                      .++++.+...+++     .+.++++.||.- . ...+.++++.+.+.++.  +.+.+..+      .+... .+|.+...
T Consensus        85 ~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~~d------ti~~~-~~~~~~~~  150 (230)
T PRK13385         85 QESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEVKD------TVKRV-KDKQVIET  150 (230)
T ss_pred             HHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEeccc------eEEEE-cCCeeEec
Confidence            3888888887752     355788899993 3 34578999888766543  33333221      12222 23544333


Q ss_pred             EeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhh-hcCcEEEEEec
Q 018622          100 AEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFR  178 (353)
Q Consensus       100 ~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~-~~~~i~~~~~~  178 (353)
                      .++.   .                      .+..-+.|.|+.+.|..+.+....... +.+|....+. ...+|..++-+
T Consensus       151 i~r~---~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~~~-~~td~~~~~~~~g~~v~~v~~~  204 (230)
T PRK13385        151 VDRN---E----------------------LWQGQTPQAFELKILQKAHRLASEQQF-LGTDEASLVERSPHPVKLVQGS  204 (230)
T ss_pred             cCHH---H----------------------HhhhcCCceeeHHHHHHHHHHHHhcCC-CcCcHHHHHHHcCCCEEEEECC
Confidence            2211   0                      122234788999888776653221222 2344333332 23677778777


Q ss_pred             ceEeEcCCHHHHHHHHHhhc
Q 018622          179 DYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       179 g~w~dIgtp~~y~~a~~~ll  198 (353)
                      ...+.|.+|+|+..|...+.
T Consensus       205 ~~n~kItt~eDl~~a~~~l~  224 (230)
T PRK13385        205 YYNIKLTTPEDMPLAKAILQ  224 (230)
T ss_pred             cccCcCCCHHHHHHHHHHHh
Confidence            78899999999999976654

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=94.24  E-value=0.35  Score=41.14  Aligned_cols=50  Identities=10%  Similarity=0.104  Sum_probs=35.7

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEE
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADIT   71 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~t   71 (353)
                      +..|++++++.+..+..     ..+.|+++.||..  ....++++++.+...+..++
T Consensus        72 ~~~g~~~si~~~l~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~  123 (188)
T TIGR03310        72 YAEGQSSSIKLGLELPV-----QSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIV  123 (188)
T ss_pred             hhcCHHHHHHHHhcCCC-----CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEE
Confidence            44689999998886222     2478999999983  34568889888766555443

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase

Probab=93.93  E-value=4.9  Score=39.64  Aligned_cols=251  Identities=11%  Similarity=0.106  Sum_probs=127.7

Q ss_pred             cccccHHHHHHHHH--HhhhhccCCCCeEEEEeCCeEEe-cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           17 WFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYR-MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        17 ~~lGT~~al~~a~~--~i~~~~~~~~~~flV~~gD~i~~-~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      .+-|.|+-......  .+++.....-+++.|.+.|++.. .| -.++.+|.++++++++=+.+-..+ ..+-|.+.. .+
T Consensus       188 ~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vD-p~~lg~~~~~~~e~~~ev~~Kt~~-d~kgG~l~~-~d  264 (469)
T PLN02474        188 YPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVD-LKILNHLIQNKNEYCMEVTPKTLA-DVKGGTLIS-YE  264 (469)
T ss_pred             eeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccC-HHHHHHHHhcCCceEEEEeecCCC-CCCccEEEE-EC
Confidence            36677765443221  22222234568999999999754 44 467888889999888755443221 123354442 34


Q ss_pred             C--CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC--------CC------Cc
Q 018622           94 G--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--------TS------ND  157 (353)
Q Consensus        94 g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~--------~~------~~  157 (353)
                      |  +++.+.|-|...... ..          ..  ....+.|++.+.|+-++|+++++....        ..      ..
T Consensus       265 gk~~lvEysqvp~e~~~~-f~----------~~--~kf~~fNtnn~w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q  331 (469)
T PLN02474        265 GKVQLLEIAQVPDEHVNE-FK----------SI--EKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQ  331 (469)
T ss_pred             CEEEEEEEecCCHHHHHh-hc----------cc--ccceeeeeeeEEEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEE
Confidence            5  466666655432110 00          00  124678999999999999887653210        00      00


Q ss_pred             h---hhhhhhhhhhcCcEEEEEec-ceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEec--eeee
Q 018622          158 F---GSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN--CRIK  231 (353)
Q Consensus       158 ~---~~d~l~~l~~~~~i~~~~~~-g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~--~~i~  231 (353)
                      |   .-++++.+   .+..++... ..+.-+.+..+++.+..++..-....-...+.....+    .|...++.  ..+.
T Consensus       332 ~Et~ig~ai~~f---~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~~l~~~~~~~~~~----~p~IeL~~~f~~v~  404 (469)
T PLN02474        332 LETAAGAAIRFF---DNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDGFVIRNKARTNPS----NPSIELGPEFKKVA  404 (469)
T ss_pred             eHHHHHHHHHhC---CCceEEEEchhhccCCCCCCCHHHHHHHHHHhccCeEEecCcccCCC----CCcEEECcccccHH
Confidence            0   01122111   233333332 2477788877888777776643211100001100111    11112221  1111


Q ss_pred             c--eEE-CCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCC
Q 018622          232 D--AII-SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN  307 (353)
Q Consensus       232 ~--~~i-g~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~  307 (353)
                      +  ..+ +--..++   ..+-.|.-++..|.++++.+.|++...              ...+..|.+|+.+.+.++..+
T Consensus       405 ~f~~rf~~iPsl~~---~d~LtV~Gdv~fG~~v~l~G~v~i~~~--------------~~~~~~ip~g~~l~~~~~~~~  466 (469)
T PLN02474        405 NFLSRFKSIPSIVE---LDSLKVSGDVWFGSGIVLKGKVTITAK--------------SGVKLEIPDGAVLENKDINGP  466 (469)
T ss_pred             hHHHhcCCCCCccc---CCeEEEeeeeEECCCcEEEEEEEEEcC--------------CCCeeecCCCcEecceeeccc
Confidence            0  000 1111111   123344555888888888888888753              111267888999988887654

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=92.17  E-value=0.27  Score=40.67  Aligned_cols=54  Identities=17%  Similarity=0.038  Sum_probs=42.2

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEEEEEE
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCA   75 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~tll~~   75 (353)
                      +..|++++|+.+...+.     ..+.|++++||..  ....+.++++.+.+++++++++..
T Consensus        68 ~~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~  123 (160)
T PF12804_consen   68 PGQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF  123 (160)
T ss_dssp             SSCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             ccCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence            35789999999998873     2489999999994  345689999998877877766544

...

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=91.99  E-value=0.32  Score=47.36  Aligned_cols=36  Identities=17%  Similarity=0.256  Sum_probs=16.6

Q ss_pred             ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceE
Q 018622          232 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTV  267 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v  267 (353)
                      ++++..++.++ ++.|.+|.|+.++.||++|.|.+.-
T Consensus       284 nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~  320 (414)
T PF07959_consen  284 NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVD  320 (414)
T ss_pred             EeEecCCceECCCCEEEeeecCCCCEECCCCEEECCc
Confidence            34444444444 3344444555555555554444443

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=90.99  E-value=2.7  Score=35.97  Aligned_cols=40  Identities=13%  Similarity=-0.074  Sum_probs=29.6

Q ss_pred             cccHHHHHHHHHHhhhhccCCCCeEEEEeCCe-EEe-cCHHHHHHHHH
Q 018622           19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHV   64 (353)
Q Consensus        19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~-i~~-~dl~~~~~~h~   64 (353)
                      .|+.++++.+....+      .+.++++.||. +.+ ..+..+++.+.
T Consensus        74 ~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~  115 (193)
T PRK00317         74 PGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAG  115 (193)
T ss_pred             CCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence            678899998887543      47899999999 334 45777877653

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=85.93  E-value=8.7  Score=33.18  Aligned_cols=42  Identities=21%  Similarity=-0.028  Sum_probs=31.9

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE--ecCHHHHHHHHH
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHV   64 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~--~~dl~~~~~~h~   64 (353)
                      +..|..++++.+...++      .+.++|+.||.-+  ...+..+++.+.
T Consensus        76 ~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~  119 (200)
T PRK02726         76 PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE  119 (200)
T ss_pred             CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            34689999999998775      3789999999943  445677877653

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=84.66  E-value=1.7  Score=36.59  Aligned_cols=49  Identities=16%  Similarity=0.255  Sum_probs=36.3

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCc
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDAD   69 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~   69 (353)
                      +..|++++++.+..++..    ..+.++++.||+  +....++.+++.+.+.+++
T Consensus        72 ~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~  122 (186)
T cd04182          72 WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG  122 (186)
T ss_pred             hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence            446899999999988751    247899999998  3456688888877654443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=84.37  E-value=9.1  Score=33.47  Aligned_cols=138  Identities=18%  Similarity=0.183  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeEE
Q 018622           22 ADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF   99 (353)
Q Consensus        22 ~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~   99 (353)
                      -+++.++.+.++.    ..+..+++.+-.  +...+++++++.+..++++..+.+.+.+.   ..|-.... .+|.+..+
T Consensus        83 ~~~~lh~le~~~~----~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~---~p~k~f~~-~~~~~~~~  154 (228)
T COG1083          83 IDAALHALESFNI----DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEH---HPYKAFSL-NNGEVKPV  154 (228)
T ss_pred             HHHHHHHHHHhcc----ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeeccc---chHHHHHh-cCCceeec
Confidence            3566777776653    234466666554  56788999999999998888877777653   11211122 34788888


Q ss_pred             EeCCCccc-cccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEEEec
Q 018622          100 AEKPSGAN-LKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR  178 (353)
Q Consensus       100 ~ekp~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~~~~  178 (353)
                      .|.|.... .+.++               ..+..+..+|+++.+.|..   +.    .-|          ......|.++
T Consensus       155 ~~~~~~~~rrQ~Lp---------------k~Y~~NgaiYi~~~~~l~e---~~----~~f----------~~~~~~y~m~  202 (228)
T COG1083         155 NEDPDFETRRQDLP---------------KAYRENGAIYINKKDALLE---ND----CFF----------IPNTILYEMP  202 (228)
T ss_pred             ccCCccccccccch---------------hhhhhcCcEEEehHHHHhh---cC----cee----------cCCceEEEcC
Confidence            88774321 11111               1346688899999998852   10    111          1244456554


Q ss_pred             -ceEeEcCCHHHHHHHHHhhcc
Q 018622          179 -DYWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       179 -g~w~dIgtp~~y~~a~~~ll~  199 (353)
                       ....||.+..++..|+..+..
T Consensus       203 ~~~~~DID~~~Dl~iae~l~~~  224 (228)
T COG1083         203 EDESIDIDTELDLEIAENLIFL  224 (228)
T ss_pred             cccccccccHHhHHHHHHHhhh
Confidence             357799999999998876553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	353
1yp2_A	451	Crystal Structure Of Potato Tuber Adp-Glucose Pyrop		1e-105
3brk_X	420	Crystal Structure Of Adp-Glucose Pyrophosphorylase		6e-29

>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451

Iteration: 1
 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/353 (49%), Positives = 252/353 (71%), Gaps = 7/353 (1%)
Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAA Q+P     +WFQGTADAVRQ+ W+FE+     +    IL GDHLYRMDY  FIQ+
Sbjct: 104 VLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQA 158
Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H + DADIT++   + E RA+ +GL+KID  GRI +FAEKP G  L+AM+VDT++LG   
Sbjct: 159 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDD 218
Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYW 181
           + A++ P++ASMG+YV  KDV+  LLR ++P +NDFGSE+IP A  +   VQAY++  YW
Sbjct: 219 KRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYW 278
Query: 182 EDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCF 240
           EDIGTI++FY AN+ +TK+  P F FYD   P YT PR+LPP+K+ +  + D++I  GC 
Sbjct: 279 EDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCV 338
Query: 241 LRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 300
           ++ C + HS+VG RS +  G  ++D++++GADYY+T+++   L A+G VPIG+G+N  I+
Sbjct: 339 IKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK 398
Query: 301 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
             IIDKN +IG +V I+NKD+VQEA R   G++I+SGI  +++ A I  G++I
Sbjct: 399 RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451

>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 157/345 (45%), Gaps = 59/345 (17%)
Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           +L A+Q   E+   W++GTADAV Q   + E       E   IL GDH+Y+ DY   +Q 
Sbjct: 94  ILPASQRVSET--QWYEGTADAVYQNIDIIEPYAP---EYXVILAGDHIYKXDYEYXLQQ 148
Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           HVD  AD+TI C  V    A+ +G+  ++    I  F EKP  A+   +  +    GF+ 
Sbjct: 149 HVDSGADVTIGCLEVPRXEATGFGVXHVNEKDEIIDFIEKP--ADPPGIPGNE---GFA- 202
Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRY--PTSN-DFGSEIIPAAIMEHDVQAYIFRD 179
                   +AS G+YVF    L + +R     PTS+ DFG +IIP  +      A+ F D
Sbjct: 203 --------LASXGIYVFHTKFLXEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFAD 254
Query: 180 -----------YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI--- 225
                      YW D+GTI ++++AN+ LT   P    YD   P +T     PP K    
Sbjct: 255 SCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHD 314
Query: 226 DNCRIKDA---IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIAS 282
           D  R   A   ++S  C +    +  S++    R +    L++ V+L +           
Sbjct: 315 DEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS----------- 363
Query: 283 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADR 327
                   + +GR+ ++ N +ID  V I  + +IV +D   +A R
Sbjct: 364 --------VKIGRHAQLSNVVIDHGVVI-PEGLIVGEDPELDAKR 399

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	0.0
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	1e-137
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	1e-13
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	2e-11
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	6e-05

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451

 Score =  513 bits (1324), Expect = 0.0
 Identities = 176/353 (49%), Positives = 251/353 (71%), Gaps = 7/353 (1%)

Query: 3   VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 62
           VLAA Q+P     +WFQGTADAVRQ+ W+FE+     +    IL GDHLYRMDY  FIQ+
Sbjct: 104 VLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQA 158

Query: 63  HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 122
           H + DADIT++   + E RA+ +GL+KID  GRI +FAEKP G  L+AM+VDT++LG   
Sbjct: 159 HRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDD 218

Query: 123 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYW 181
           + A++ P++ASMG+YV  KDV+  LLR ++P +NDFGSE+IP A  +   VQAY++  YW
Sbjct: 219 KRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYW 278

Query: 182 EDIGTIKSFYEANMALTK-ESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCF 240
           EDIGTI++FY AN+ +TK   P F FYD   P YT PR+LPP+K+ +  + D++I  GC 
Sbjct: 279 EDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCV 338

Query: 241 LRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 300
           ++ C + HS+VG RS +  G  ++D++++GADYY+T+++   L A+G VPIG+G+N  I+
Sbjct: 339 IKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK 398

Query: 301 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 353
             IIDKN +IG +V I+NKD+VQEA R   G++I+SGI  +++ A I  G++I
Sbjct: 399 RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score =  396 bits (1019), Expect = e-137
 Identities = 99/368 (26%), Positives = 160/368 (43%), Gaps = 64/368 (17%)

Query: 2   FVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQ 61
            +L A+Q   E+   W++GTADAV Q   + E       E + IL GDH+Y+MDY   +Q
Sbjct: 93  DILPASQRVSET--QWYEGTADAVYQNIDIIEPY---APEYMVILAGDHIYKMDYEYMLQ 147

Query: 62  SHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFS 121
            HVD  AD+TI C  V    A+ +G++ ++    I  F EKP+                 
Sbjct: 148 QHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKPADPP-------------- 193

Query: 122 PQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIMEHDVQAYIFR 178
                +   +ASMG+YVF    L + +R       +S DFG +IIP  +      A+ F 
Sbjct: 194 GIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFA 253

Query: 179 D-----------YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-- 225
           D           YW D+GTI ++++AN+ LT   P    YD   P +T     PP K   
Sbjct: 254 DSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVH 313

Query: 226 ----DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIA 281
                      +++S  C +    +  S++    R +    L++ V+L +          
Sbjct: 314 DDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS---------- 363

Query: 282 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI-RSGITI 340
                    + +GR+ ++ N +ID  V I + +++  +D   +A R    F    SGI +
Sbjct: 364 ---------VKIGRHAQLSNVVIDHGVVIPEGLIV-GEDPELDAKR----FRRTESGICL 409

Query: 341 IMEKATIE 348
           I +    +
Sbjct: 410 ITQSMIDK 417

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 68/347 (19%), Positives = 116/347 (33%), Gaps = 79/347 (22%)

Query: 20  GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 79
           GT  A+         AK    +   I+ GD            +  +    IT+   A+  
Sbjct: 79  GTGAAILS-------AKFN--DEALIIYGDLF--------FSNEKEICNIITLKENAIIG 121

Query: 80  SRASD---YGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 136
            + S+   YG++ +DN   +++  EKP                  P        + + G+
Sbjct: 122 VKVSNPKDYGVLVLDNQNNLSKIIEKPEI---------------PPSN------LINAGI 160

Query: 137 YVFKKDVLFKLLR-----WR---YPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIK 188
           Y    D +F  L       R     T      + I     +H V+   +  YW DIG   
Sbjct: 161 YKLNSD-IFTYLDKISISERGELELT------DAINLMAKDHRVKVIEYEGYWMDIGKPW 213

Query: 189 SFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV-- 246
           +  + N           F         + +      I+    +DA I  G ++       
Sbjct: 214 NIIDVNKWALDNL---VFSQNLGNVEDNVKIKGKVIIE----EDAEIKSGTYIEGPVYIG 266

Query: 247 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEG-KVPIGVGRNTKIRNCII 304
           + S +G  S L     L +   +GA       E+  S++ EG K+P      + + + +I
Sbjct: 267 KGSEIGPNSYLRPYTILVEKNKIGAS-----VEVKESVIMEGSKIP----HLSYVGDSVI 317

Query: 305 DKNVKIGKDVVIVN-KDDVQEADRPELGFYIRSGITIIMEKATIEDG 350
            ++V  G   +I N + D +E      G  I SG       A I   
Sbjct: 318 AEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSG--RRKLGAFIGGH 362

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 42/176 (23%)

Query: 20  GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 79
           G   ++         AKN   +   +  GDH+Y      FI+  V  +  I        +
Sbjct: 95  GNGYSLLV-------AKNHVEDRFILTMGDHVYSQQ---FIEKAVRGEGVIADREPRFVD 144

Query: 80  SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVF 139
               +   +++++ GR+A+  +     +                           G +V 
Sbjct: 145 I--GEATKIRVED-GRVAKIGKDLREFDC-----------------------VDTGFFVL 178

Query: 140 KKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQA-YIFRDYWEDIGTIKSFYEAN 194
              + F+          D     +   +    +   Y+  + W D+ T +    AN
Sbjct: 179 DDSI-FEHA----EKLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN 229

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 14/174 (8%), Positives = 46/174 (26%), Gaps = 40/174 (22%)

Query: 35  AKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG 94
            K     +  I   ++L++    +  ++ + R    ++          ++   +   +  
Sbjct: 114 VKEELANSYVIDADNYLFK----NMFRNDLTRSTYFSVY-----REDCTNEWFLVYGDDY 164

Query: 95  RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR----- 149
           ++                                      GV  +      K++      
Sbjct: 165 KVQDIIVDSKAGR------------------------ILSGVSFWDAPTAEKIVSFIDKA 200

Query: 150 -WRYPTSNDFGSEIIPAAIMEHDVQAYIF-RDYWEDIGTIKSFYEANMALTKES 201
                  + +   ++   I E DV       +   +I +++ + +    L  E+
Sbjct: 201 YVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKNEN 254

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 49/352 (13%), Positives = 96/352 (27%), Gaps = 130/352 (36%)

Query: 13  SGKNWFQGTADAVRQFT----------WVFEDAKNRN-----IENVAILCGDHLYRMDYM 57
           SGK W     D    +           W+  + KN N     +E +  L     Y++D  
Sbjct: 161 SGKTWV--ALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLL----YQIDPN 212

Query: 58  DFIQSHVDRDADITISCAAVGES-----RASDY--GLVKIDNM----------------- 93
               S  D  ++I +   ++        ++  Y   L+ + N+                 
Sbjct: 213 W--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 94  -GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR----KC----------------PYVA 132
             R  Q  +  S A    + +D   +  +P E +    K                 P   
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 133 SMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI---MEHDVQAY-----IFRD----- 179
           S+ +    +D L     W++   +   + II +++      + +       +F       
Sbjct: 331 SI-IAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 180 ------YWEDIGTIKSFYEANMALTKESPAFHFY-----DPKTPFYTSPRFLPPTKIDNC 228
                  W D+       +  + + K     H Y      PK                  
Sbjct: 389 TILLSLIWFDV----IKSDVMVVVNK----LHKYSLVEKQPKESTI-------------- 426

Query: 229 RIKDAIISHGCFLRE-CTVE-----HSIVGERSRLDYGVELKDTVMLGADYY 274
            I         +L     +E     H  + +   +    +  D +    D Y
Sbjct: 427 SI------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 293 VGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELG--FYIRSGITIIMEKATIED 349
           +  N  I +   I     +G+ +V    D + +     +G    IR+   +I     I D
Sbjct: 35  IRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTE-NVIYGDTIIGD 93

Query: 350 GMVI 353
               
Sbjct: 94  NFQT 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	353
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	100.0
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	100.0
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	100.0
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	100.0
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	100.0
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.97
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.97
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	99.87
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.87
3pnn_A	303	Conserved domain protein; structural genomics, PSI	99.84
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	99.83
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	99.8
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	99.79
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	99.78
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	99.76
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	99.74
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	99.73
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	99.71
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	99.7
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	99.7
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.67
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	99.64
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.58
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	99.58
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.57
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.57
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.55
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.55
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.54
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.54
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.54
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.53
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.51
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.51
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.5
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.49
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.48
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.47
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.46
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.46
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.45
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.45
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.44
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.44
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.43
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.43
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.42
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.4
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.4
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.39
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.38
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.37
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.36
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.36
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.35
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.35
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.35
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.34
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.34
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	99.33
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.33
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.32
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.32
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.31
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.31
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.31
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.31
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	99.31
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.3
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.28
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.28
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.27
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.27
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	99.26
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.26
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.26
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.24
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.24
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.23
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.22
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.21
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.19
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.16
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.14
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.14
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.14
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.13
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	99.12
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.12
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.11
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	99.09
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.09
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.07
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.06
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.05
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.05
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.05
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.04
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.04
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.04
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.03
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.01
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	98.99
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	98.98
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	98.96
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	98.96
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	98.93
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	98.93
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	98.92
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	98.9
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	98.89
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	98.88
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	98.88
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	98.85
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	98.83
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	98.83
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	98.8
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	98.79
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	98.77
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	98.76
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	98.75
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	98.75
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	98.72
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	98.72
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	98.71
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	98.7
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	98.7
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	98.7
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	98.68
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	98.67
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	98.6
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	98.58
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	98.51
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.5
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	98.49
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	98.47
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	98.46
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	98.43
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	98.41
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.37
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.35
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.34
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	98.26
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	98.25
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	98.22
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.22
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	98.18
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.13
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	98.07
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	98.01
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	97.83
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	97.81
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	97.6
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	97.37
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	97.25
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	97.18
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	97.03
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	96.99
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	96.95
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	96.79
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	96.74
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	96.3
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	96.06
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	95.21
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	94.88
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	90.51
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	88.56
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	83.04
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	82.05

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=100.00  E-value=7.1e-45  Score=355.23  Aligned_cols=336  Identities=51%  Similarity=0.978  Sum_probs=275.5

Q ss_pred             CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      ++|++||+++|+.++.++++   ..+++|+|++||++++.+|.+++++|+++++++|+++.+.+.+.+.+||++.+|+++
T Consensus       114 ~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~~  190 (451)
T 1yp2_A          114 PDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG  190 (451)
T ss_dssp             CCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTS
T ss_pred             cccccCcHHHHHHHHHHHHh---cCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEECCCC
Confidence            46789999999999999862   234789999999999999999999999999999999888752225789999999889


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc-CcEE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQ  173 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~-~~i~  173 (353)
                      +|+.|.|||..+...++.++.+++..++...+..++++++|+|+|++++|..++++..+...++.+++|+.++++ .++.
T Consensus       191 ~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l~~~i~~g~~v~  270 (451)
T 1yp2_A          191 RIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQ  270 (451)
T ss_dssp             BEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEE
T ss_pred             CEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHHHHHHhcCCceE
Confidence            999999999865433333333333322211111246899999999999987677654334456677899998887 7999


Q ss_pred             EEEecceEeEcCCHHHHHHHHHhhccCC-CcccccCCCCceecCCCCCCCeEEeceeeeceEECCCcEECceEEeeeEEc
Q 018622          174 AYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVG  252 (353)
Q Consensus       174 ~~~~~g~w~dIgtp~~y~~a~~~ll~~~-~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v~~~~ig  252 (353)
                      +|.++++|.|+|||++|++++++++.+. +...++++.+.+++++.++++++|.++.|.++.||++|+|+++.+.+++||
T Consensus       271 ~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~~~Ig~~~~I~~~~i~~~~Ig  350 (451)
T 1yp2_A          271 AYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVG  350 (451)
T ss_dssp             EEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEEEEEEECTTCEEEEEEEESCEEC
T ss_pred             EEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEEeCeEECCCCEEcceEEeccEEC
Confidence            9999999999999999999999999876 556678899999999999999999778888999999999997788899999


Q ss_pred             CCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCce
Q 018622          253 ERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGF  332 (353)
Q Consensus       253 ~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~  332 (353)
                      ++|.||++|.|.++++++++.+............+.+.+.||+++.|.+++||++|.||+++++.+..++....+||+++
T Consensus       351 ~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~  430 (451)
T 1yp2_A          351 LRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGY  430 (451)
T ss_dssp             TTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTE
T ss_pred             CCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeCCcccccCceeCCCE
Confidence            99999999999999999885444443332222223233799999999999999999999999999988776666899999


Q ss_pred             EEccCeEEecCCcEECCCccC
Q 018622          333 YIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       333 ~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +|+.++++||++++||+||+|
T Consensus       431 ~ig~~~v~Ig~~a~i~agsvv  451 (451)
T 1yp2_A          431 FIKSGIVTVIKDALIPSGIII  451 (451)
T ss_dssp             EEETTEEEECTTCEECTTCBC
T ss_pred             EEcCCEEEECCCcEECCCccC
Confidence            999998889999999999987

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=100.00  E-value=9.4e-38  Score=302.16  Aligned_cols=287  Identities=32%  Similarity=0.579  Sum_probs=230.1

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      .|.+||+++|++++.++.+   ...++|+|++||++++.++.++++.|+++++++|+++.+.+.+.+.+||++.+|++++
T Consensus       105 ~~~~Gt~~al~~a~~~l~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~g~  181 (420)
T 3brk_X          105 QWYEGTADAVYQNIDIIEP---YAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDE  181 (420)
T ss_dssp             -CCCCHHHHHHTTHHHHHH---HCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECTTSB
T ss_pred             ccccCCHHHHHHHHHHHHh---cCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECCCCc
Confidence            4568999999999999863   1247899999999999999999999999999999999887543367899999998899


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhcCcE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIMEHDV  172 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~~~i  172 (353)
                      |+.|.|||..+...  ..            ...++++++|+|+|++++|..++++..+   ...+|..++++.+++++++
T Consensus       182 v~~~~ekp~~~~~~--~~------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g~v  247 (420)
T 3brk_X          182 IIDFIEKPADPPGI--PG------------NEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKA  247 (420)
T ss_dssp             EEEEEESCSSCCCB--TT------------BTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHSCE
T ss_pred             EEEeEeCCCccccc--cc------------cccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhCcE
Confidence            99999998643210  00            0024689999999999998666654332   1235667899999988899


Q ss_pred             EEEEe-----------cceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEe------ceeeeceEE
Q 018622          173 QAYIF-----------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID------NCRIKDAII  235 (353)
Q Consensus       173 ~~~~~-----------~g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~------~~~i~~~~i  235 (353)
                      .+|.+           +++|.|+|||++|++|++.++.+.+...++.+.+++++.+.+.|++.++      ++.++++.|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~i~~~~i  327 (420)
T 3brk_X          248 VAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVV  327 (420)
T ss_dssp             EEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCCCEEECBCSSCBCEEESCEE
T ss_pred             EEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCCcEEecccccCCcEecCCEE
Confidence            99999           8999999999999999999998876666677788899999999999996      367789999


Q ss_pred             CCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeE
Q 018622          236 SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVV  315 (353)
Q Consensus       236 g~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~  315 (353)
                      |++|+|.++.|.+|+||++|+||++|.|++++++++                   +.||+++.|.+|+||+++.||++++
T Consensus       328 g~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~ig~~~~i~~~~~  388 (420)
T 3brk_X          328 SGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRHAQLSNVVIDHGVVIPEGLI  388 (420)
T ss_dssp             CSSCEEESCEEESCEECTTCEECTTCEEEEEEECTT-------------------CEECTTCEEEEEEECTTCEECTTCE
T ss_pred             CCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCC-------------------CEECCCCEEeceEECCCCEECCCCE
Confidence            999999767889999999999999999999888877                   8999999999999999999999999


Q ss_pred             EccCCCcccccCCCCceEE-ccCeEEecC
Q 018622          316 IVNKDDVQEADRPELGFYI-RSGITIIME  343 (353)
Q Consensus       316 i~~~~~~~~~~~~~~~~~i-~~~~~vig~  343 (353)
                      +.+....+     ..+.++ .+|.++|+.
T Consensus       389 i~~~~~~~-----~~~~~~~~~~~~~~~~  412 (420)
T 3brk_X          389 VGEDPELD-----AKRFRRTESGICLITQ  412 (420)
T ss_dssp             ESSCHHHH-----HHHSEECTTSCEEECH
T ss_pred             EeCCCCCC-----CceEEEecCceEEEec
Confidence            98653322     112455 455445443

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=100.00  E-value=2.9e-34  Score=281.29  Aligned_cols=311  Identities=18%  Similarity=0.246  Sum_probs=209.2

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      ++++||+++|+.++.++++    .++.|++++||.  +...+++++++.|+++++++++++.+.++  +..||++.+|++
T Consensus        82 ~~~~G~~~sl~~a~~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~--~~~~g~v~~d~~  155 (468)
T 1hm9_A           82 SEQLGTGHAVMMTEPILEG----LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN--PFGYGRIVRNDN  155 (468)
T ss_dssp             SSCCCHHHHHHTTHHHHTT----CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC--CTTSCEEEECTT
T ss_pred             CccCChHHHHHHHHHHhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCC--CCceeEEEECCC
Confidence            4568999999999998862    247899999999  67889999999999999999998888765  678999999988


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhc-
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIME-  169 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~-  169 (353)
                      |+|+.|.|||......                 ...+++++|+|+|+++.|..++++....   ...+.+|+++.++++ 
T Consensus       156 g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g  218 (468)
T 1hm9_A          156 AEVLRIVEQKDATDFE-----------------KQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETG  218 (468)
T ss_dssp             CCEEEEECTTTCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCTTHHHHHHHHHT
T ss_pred             CCEEEEEECCCCChHH-----------------hcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEHHHHHHHHHHCC
Confidence            9999999997522110                 0246899999999999775566543322   123457899988876 


Q ss_pred             CcEEEEEecceEeEcC--CHHHHHHHHHhhccCC-------------CcccccCCCC------------ceecCCCCCCC
Q 018622          170 HDVQAYIFRDYWEDIG--TIKSFYEANMALTKES-------------PAFHFYDPKT------------PFYTSPRFLPP  222 (353)
Q Consensus       170 ~~i~~~~~~g~w~dIg--tp~~y~~a~~~ll~~~-------------~~~~~~~~~~------------~i~~~~~i~~~  222 (353)
                      .++.+|.++++|.+++  ||++|.+++..+..+.             +...++++..            .+.+.+.|+++
T Consensus       219 ~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~  298 (468)
T 1hm9_A          219 EKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAE  298 (468)
T ss_dssp             CCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCEECSSCEEESSCEECTT
T ss_pred             CEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCEECCCcEECCCCEECCC
Confidence            5899999999998755  9999999986654221             1001122222            22223333333


Q ss_pred             eEEec-eeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEec-eEEECCccccchhHH-HHhhcCCCcceEeCCCeEE
Q 018622          223 TKIDN-CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKI  299 (353)
Q Consensus       223 ~~i~~-~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~-~v~~~~~~~~~~~~~-~~~~~~~~~~~~ig~~~~i  299 (353)
                      +.|+. +.|+++.||++|.|+++.+.++.||++|.||++|.|++ +++..+..++..+++ .+.++++   +.|++.+.+
T Consensus       299 ~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~---~~i~~~~~i  375 (468)
T 1hm9_A          299 TVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGEN---TKAGHLTYI  375 (468)
T ss_dssp             CEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTT---CEEEEEEEE
T ss_pred             CEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCC---cEeCCceEE
Confidence            33332 44445556666666655556677777777777777773 333333334444333 2333344   455555555


Q ss_pred             cceEeCCCCEECCCeEEccC-------CCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          300 RNCIIDKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       300 ~~~iig~~~~Ig~~~~i~~~-------~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      .++.||++|.||+++++.+.       ..+++.++||.++.|..+ +.||++++|++|++|
T Consensus       376 ~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~-v~Ig~~~~i~~~s~v  435 (468)
T 1hm9_A          376 GNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAP-VELGDNSLVGAGSTI  435 (468)
T ss_dssp             ESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESS-CEECTTCEECTTCEE
T ss_pred             ccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCC-cEECCCCEECCCCEE
Confidence            67789999999999988773       334455555555555544 346999999988875

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=100.00  E-value=5.9e-33  Score=274.27  Aligned_cols=314  Identities=19%  Similarity=0.189  Sum_probs=215.3

Q ss_pred             CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE-E-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECC
Q 018622           15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN   92 (353)
Q Consensus        15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i-~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~   92 (353)
                      |++++||||||++|++++++   ...+++++++||.. . ..++.+|+++|+++++++|+++.++++  +.+||++..|+
T Consensus        89 q~~~lGTa~Av~~a~~~l~~---~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~d--p~~yG~i~~~~  163 (501)
T 3st8_A           89 QDRPLGTGHAVLCGLSALPD---DYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDD--PFGYGRILRTQ  163 (501)
T ss_dssp             CSSCCCHHHHHHHHHTTSCT---TCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC--CTTSCEEEECT
T ss_pred             cCCCCCcHHHHHHHHHHhcc---ccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccCC--chhcccccccc
Confidence            57899999999999999973   23468999999973 3 456899999999999999999999887  88999999999


Q ss_pred             CCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhc
Q 018622           93 MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIME  169 (353)
Q Consensus        93 ~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~  169 (353)
                      +|+|+.|.|||+.+..+.                 ..+++|+|+|+|++++|..++++....   ...+++|++..+...
T Consensus       164 ~g~v~~ivEk~~~~~~~~-----------------~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~~~~~~  226 (501)
T 3st8_A          164 DHEVMAIVEQTDATPSQR-----------------EIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSD  226 (501)
T ss_dssp             TCCEEEEECGGGCCHHHH-----------------HCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHT
T ss_pred             ceeEEeeccccCCChhhc-----------------cceeeeceeeeecchhHHHhhhhhcccccccccchhhHHHHHHhc
Confidence            999999999987543211                 257899999999999998887764432   234566777766655


Q ss_pred             -CcEEEEEecceEeEcC--CHHHHHHHHHhhccC--------C-----CcccccCCCCceecCCCCCCCeEEec-eee--
Q 018622          170 -HDVQAYIFRDYWEDIG--TIKSFYEANMALTKE--------S-----PAFHFYDPKTPFYTSPRFLPPTKIDN-CRI--  230 (353)
Q Consensus       170 -~~i~~~~~~g~w~dIg--tp~~y~~a~~~ll~~--------~-----~~~~~~~~~~~i~~~~~i~~~~~i~~-~~i--  230 (353)
                       ..+..+..+.+|...+  +...+.++...+..+        .     +...++.++..+.+.+.|.+++.+.+ +.+  
T Consensus       227 g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv~I~~~v~i~g~~~Ig~  306 (501)
T 3st8_A          227 GQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGG  306 (501)
T ss_dssp             TCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTCEECSSEEEETTCEECT
T ss_pred             CceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcceecceeeecCcccccc
Confidence             5677778777766554  444444333222111        1     11123334444445555555554432 222  


Q ss_pred             ----------eceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECC-ccccchhHHH-HhhcCCCcceEeCCCeE
Q 018622          231 ----------KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA-DYYQTESEIA-SLLAEGKVPIGVGRNTK  298 (353)
Q Consensus       231 ----------~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~-~~~~~~~~~~-~~~~~~~~~~~ig~~~~  298 (353)
                                .++.++.++.+..+.+..+.+++++.|++++++++.++++. ..++.+++++ ++++++   ++|++.++
T Consensus       307 ~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~g---skI~~~~~  383 (501)
T 3st8_A          307 RCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTG---TKVPHLTY  383 (501)
T ss_dssp             TCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESCEECTT---CEEEESCE
T ss_pred             ceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEccceecCC---cEEeccce
Confidence                      23333333333333344556666666666666665544443 3355555553 666666   88999999


Q ss_pred             EcceEeCCCCEECCCeEEccCCCccc-ccCCCCceEEccCeE-----EecCCcEECCCccC
Q 018622          299 IRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGIT-----IIMEKATIEDGMVI  353 (353)
Q Consensus       299 i~~~iig~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~i~~~~~-----vig~~~~i~~g~vv  353 (353)
                      +.+|+||++|.||+++++.|.+++.. .+.||++++|+.++.     .||++|+|++||+|
T Consensus       384 i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v  444 (501)
T 3st8_A          384 VGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVV  444 (501)
T ss_dssp             EESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred             ecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEE
Confidence            99999999999999999999766443 366676666665543     47999999999985

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=100.00  E-value=5.8e-32  Score=259.85  Aligned_cols=277  Identities=19%  Similarity=0.292  Sum_probs=211.6

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe--cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~--~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      +++|++++|+.+.+  .       ++|++++||+++.  .+++++++     ++++++++.+.++  +..|+++..|++|
T Consensus        76 ~~~g~~~~l~~~~~--~-------~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~~--~~~~~~v~~~~~g  139 (401)
T 2ggo_A           76 DIKGTGAAILSAKF--N-------DEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVSN--PKDYGVLVLDNQN  139 (401)
T ss_dssp             TCCBSTTTGGGCCC--S-------SEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECSC--CSSSCEEEECTTS
T ss_pred             CCCChHHHHHHhcc--C-------CCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcCC--CcceeEEEECCCC
Confidence            36799999987753  2       7899999999987  66777776     4568888888765  5679999998889


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-C
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME-H  170 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~-~  170 (353)
                      ++..|.|||..+.                     ++++++|+|+|++++|+. +++..+   ...+ ..++++.+ +. .
T Consensus       140 ~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~~-~~~~~~~~-~~g~  195 (401)
T 2ggo_A          140 NLSKIIEKPEIPP---------------------SNLINAGIYKLNSDIFTY-LDKISISERGELE-LTDAINLM-AKDH  195 (401)
T ss_dssp             SEEEEECSCSSCS---------------------CSEEEEEEEEEETHHHHH-HHHSCCCSSSCBC-HHHHHHHH-HHHS
T ss_pred             eEEEEEECCCCCC---------------------CcEEEEEEEEEcHHHHHH-hhhcCcCCCCceE-HHHHHHHH-HCCC
Confidence            9999999986432                     468999999999999974 554321   1223 35778777 54 6


Q ss_pred             cEEEEEecceEeEcCCHHHHHHHHHhhccCCC-c-c-cccCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ce
Q 018622          171 DVQAYIFRDYWEDIGTIKSFYEANMALTKESP-A-F-HFYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-EC  244 (353)
Q Consensus       171 ~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~-~-~-~~~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~  244 (353)
                      ++..+..+++|.|++||++|.+|++.++.+.. . . ..+++.+.+.+.+.+++++.|.. +.+. ++.||++|.|+ ++
T Consensus       196 ~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~  275 (401)
T 2ggo_A          196 RVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNS  275 (401)
T ss_dssp             CEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSC
T ss_pred             cEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCC
Confidence            89999999999999999999999998876543 1 1 13445555555556666666643 5553 57888888887 56


Q ss_pred             EEe-eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEcc-----
Q 018622          245 TVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN-----  318 (353)
Q Consensus       245 ~v~-~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~-----  318 (353)
                      .|. +++||++|.||++|.|+++++.++                   +.|++++.|.+++||+++.||+++.+.+     
T Consensus       276 ~i~~~~~Ig~~~~ig~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~  336 (401)
T 2ggo_A          276 YLRPYTILVEKNKIGASVEVKESVIMEG-------------------SKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDE  336 (401)
T ss_dssp             EECTTEEECSSCEEEETCEEESEEECTT-------------------CEEEESCEEESCEECTTCEECTTCEECCSCTTC
T ss_pred             EEcCCcEECCCCEECCCCEEecCEEcCC-------------------cEECCCceEcceEECCCcEECCCcEEcCcccCC
Confidence            665 689999999999999988777776                   8999999999999999999999999973     


Q ss_pred             -------------------CCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          319 -------------------KDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       319 -------------------~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                                         +..+++.++||.++.|..+ +.||++++|++|++|
T Consensus       337 ~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~g-v~Ig~~~vi~~gsvv  389 (401)
T 2ggo_A          337 KEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPG-VKIGAYARIYPGAVV  389 (401)
T ss_dssp             SCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred             CceeEEECCceEEecccccCcEECCCeEECCCcEEcCC-cEECCCcEECCCCeE
Confidence                               3445566666666666666 346888888888875

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.97  E-value=1.8e-31  Score=260.71  Aligned_cols=307  Identities=15%  Similarity=0.165  Sum_probs=196.0

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      ++.+||+++|+.++.++.+     .+.|++++||.  +...+++++++.|++  .++++++.+..+  +..|+++..| +
T Consensus        80 ~~~~g~~~~i~~~~~~~~~-----~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~--~~~~g~v~~~-~  149 (459)
T 4fce_A           80 AEQLGTGHAMQQAAPHFAD-----DEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLDN--PSGYGRIVRE-N  149 (459)
T ss_dssp             SSCCCHHHHHHHHGGGSCT-----TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSC--CTTSCEEEEE-T
T ss_pred             CCCCCcHHHHHHHHHhcCC-----CCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecCC--CCcccEEEeC-C
Confidence            5578999999999988862     47999999999  677889999998864  567887777665  6789999987 7


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME-  169 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~-  169 (353)
                      +++..|.|||......                 ...+++++|+|+|+++.|..+++....   ....+..|+++.+.+. 
T Consensus       150 g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g  212 (459)
T 4fce_A          150 GDVVGIVEHKDASDAQ-----------------REINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADG  212 (459)
T ss_dssp             TEEEEEECGGGCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCCTTHHHHHHHHTT
T ss_pred             CcEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEEHHHHHHHHHHCC
Confidence            9999999987532211                 024689999999999988667765321   1223457888887776 


Q ss_pred             CcEEEEEecceE--eEcCCHHHHHHHHHhhccCC-------------CcccccCCCCceecCCCCCCCe-----------
Q 018622          170 HDVQAYIFRDYW--EDIGTIKSFYEANMALTKES-------------PAFHFYDPKTPFYTSPRFLPPT-----------  223 (353)
Q Consensus       170 ~~i~~~~~~g~w--~dIgtp~~y~~a~~~ll~~~-------------~~~~~~~~~~~i~~~~~i~~~~-----------  223 (353)
                      .++.++..+++|  ++|+||++|..|+..+..+.             |....+++...+.+++.|++++           
T Consensus       213 ~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~  292 (459)
T 4fce_A          213 KKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDR  292 (459)
T ss_dssp             CCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSCEECTTEEEEEEEEECTT
T ss_pred             CeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCcEECCCeeeccceEECCC
Confidence            589999999766  67999999999986554321             0000111112222222233322           


Q ss_pred             -EEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEEC-CccccchhHH-HHhhcCCCcceEeCCCeE
Q 018622          224 -KIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLG-ADYYQTESEI-ASLLAEGKVPIGVGRNTK  298 (353)
Q Consensus       224 -~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~-~~~~~~~~~~-~~~~~~~~~~~~ig~~~~  298 (353)
                       .|+. +.+.++.||++|.|+ ++.+.++.||++|.||++|.|...+.++ +..++..+.+ .+.++++   +.+++.+.
T Consensus       293 ~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~---~~i~~~~~  369 (459)
T 4fce_A          293 VRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKG---SKAGHLSY  369 (459)
T ss_dssp             CEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEEEECTT---CEEEEEEE
T ss_pred             CEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEeeeEEcCC---CEECCceE
Confidence             2221 333345555555555 4444455555555555555555322222 2223333322 1233333   44455555


Q ss_pred             EcceEeCCCCEECCCeEEccC-------CCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          299 IRNCIIDKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       299 i~~~iig~~~~Ig~~~~i~~~-------~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +.+++||+++.||+++.+.+.       ..+++.+.||.++.|..+ +.||++++||+|++|
T Consensus       370 i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~g-v~Ig~~~~igagsvV  430 (459)
T 4fce_A          370 LGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVANGATIGAGTTV  430 (459)
T ss_dssp             EEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESS-EEECTTCEECTTCEE
T ss_pred             ECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCC-cEECCCCEECCCCEE
Confidence            566788889999999888773       345555666666666666 346999999999875

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.97  E-value=5.6e-31  Score=257.01  Aligned_cols=307  Identities=19%  Similarity=0.216  Sum_probs=206.1

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      ++++||+++|+++++++++     .+.|++++||.  +...+++++++.|++  +++++++.+.++  +..|+.+..| +
T Consensus        77 ~~~~g~~~~~~~~~~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~--~~~~g~v~~~-~  146 (456)
T 2v0h_A           77 TEQLGTAHAVQQAAPFFKD-----NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLDN--PTGYGRIIRE-N  146 (456)
T ss_dssp             SCCCCHHHHHHHHGGGCCT-----TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSS--CTTSCEEEEE-T
T ss_pred             CCCCCcHHHHHHHHHhcCC-----CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecCC--CCccceEEEc-C
Confidence            4568999999999988852     47899999999  667889999998866  578888877665  5679988887 7


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhc-
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIME-  169 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~-  169 (353)
                      +++..|.|||.....+                 ...+++++|+|+|+++.|..+++.....   ...+..++++.+++. 
T Consensus       147 g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g  209 (456)
T 2v0h_A          147 GNVVAIVEQKDANAEQ-----------------LNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDN  209 (456)
T ss_dssp             TEEEEEECTTTCCHHH-----------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCCGGGHHHHHHHTT
T ss_pred             CcEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhccccccccEEHHHHHHHHHHcC
Confidence            8999999987632110                 0246899999999999776666543221   122357888887766 


Q ss_pred             CcEEEEEecce--EeEcCCHHHHHHHHHhhccCC------CcccccCC-CCceecCCCCCCCeEEec-eeee-ceEECCC
Q 018622          170 HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDP-KTPFYTSPRFLPPTKIDN-CRIK-DAIISHG  238 (353)
Q Consensus       170 ~~i~~~~~~g~--w~dIgtp~~y~~a~~~ll~~~------~~~~~~~~-~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~  238 (353)
                      .++..+..+++  |++++||++|.+|++.+..+.      ....+++| ...+.+++.+++++.|+. +.+. ++.||++
T Consensus       210 ~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~  289 (456)
T 2v0h_A          210 CQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDR  289 (456)
T ss_dssp             CCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSSCEECSSEEEEEEEEECTT
T ss_pred             CEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCCCEEcCCcEEcCCcEECCC
Confidence            58999999765  568999999999987655321      00111232 233555555566666653 5553 5777777


Q ss_pred             cEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCCcceEeCCCeEE----------------
Q 018622          239 CFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIGVGRNTKI----------------  299 (353)
Q Consensus       239 ~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~~i----------------  299 (353)
                      |.|+ ++.|.++.||++|.|+++|.|.++.+..+..++..+.+  .+.++++   +.||+++.|                
T Consensus       290 ~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~---~~ig~~~~i~~~~i~~~~~i~~~~~  366 (456)
T 2v0h_A          290 VKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAE---THVGNFVEIKKSTVGKGSKVNHLTY  366 (456)
T ss_dssp             CEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTT---CEEEEEEEEESCEECTTCEEEEEEE
T ss_pred             CEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCC---CEECCCCEEeccEECCCCEecccee
Confidence            7777 66777777777777777777766554444334333322  1222222   233322222                


Q ss_pred             -cceEeCCCCEECCCeEEcc-------CCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          300 -RNCIIDKNVKIGKDVVIVN-------KDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       300 -~~~iig~~~~Ig~~~~i~~-------~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                       .++.||++|.||+++++.+       ...+++.++||.++.|..+ +.||++++|++|++|
T Consensus       367 ~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~-v~Ig~~~~ig~~s~v  427 (456)
T 2v0h_A          367 VGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VKVANGATIGAGTTI  427 (456)
T ss_dssp             EESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEES-EEECTTCEECTTCEE
T ss_pred             ecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCC-cEECCCCEECCCCEE
Confidence             3458888888898888876       3445555666666666555 346999999998875

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=99.87  E-value=1.8e-21  Score=177.89  Aligned_cols=158  Identities=19%  Similarity=0.286  Sum_probs=132.3

Q ss_pred             CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecC-----HHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEE
Q 018622           15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-----YMDFIQSHVDRDADITISCAAVGESRASDYGLVK   89 (353)
Q Consensus        15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~d-----l~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~   89 (353)
                      +++++||++||++++++++      +++|+|++||++++.+     ++++++.|+++++ .++++..++.+.+.+||++.
T Consensus       102 ~~~~~Gt~~al~~a~~~l~------~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~  174 (281)
T 3juk_A          102 QKQMKGLGHAILTGEALIG------NEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKYGVIR  174 (281)
T ss_dssp             CSSCCCHHHHHHHTHHHHC------SSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CEEEEEECCTTTGGGSEEEE
T ss_pred             cCCCCCcHHHHHHHHHHcC------CCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CEEEEEEechhhcccCCEEE
Confidence            3568899999999999996      3789999999999999     9999999998887 78888777554578999999


Q ss_pred             ECC--CC--CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhh
Q 018622           90 IDN--MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEI  162 (353)
Q Consensus        90 ~d~--~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~  162 (353)
                      +|+  +|  +|..|.|||.....                   .++++++|+|+|++++|+ .+++..+   ...+ ..++
T Consensus       175 ~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~GiYi~~~~~l~-~l~~~~~~~~~e~~-l~d~  233 (281)
T 3juk_A          175 GEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVIGRYILTPDIFE-ILSETKPGKNNEIQ-ITDA  233 (281)
T ss_dssp             EEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEEEEEEECTTHHH-HHHTCCCCGGGSCC-HHHH
T ss_pred             eccCCCCceEEeEEEECcCCCCC-------------------CcceeEEEEEEECHHHHH-HHHhcCCCCCCcee-HHHH
Confidence            986  78  99999999974321                   247899999999999996 4554322   2234 4789


Q ss_pred             hhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhccC
Q 018622          163 IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE  200 (353)
Q Consensus       163 l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~  200 (353)
                      ++.+++++++.+|.++++|.|||||++|++|++.++..
T Consensus       234 i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~  271 (281)
T 3juk_A          234 LRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKK  271 (281)
T ss_dssp             HHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence            99999889999999999999999999999999998865

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.87  E-value=6e-23  Score=195.17  Aligned_cols=103  Identities=12%  Similarity=0.069  Sum_probs=61.5

Q ss_pred             CeEEEEeCCeEEec--CHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECC--CCCeeEEEeCCCcccccccccccc
Q 018622           41 ENVAILCGDHLYRM--DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN--MGRIAQFAEKPSGANLKAMQVDTS  116 (353)
Q Consensus        41 ~~flV~~gD~i~~~--dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~--~g~V~~~~ekp~~~~~~~~~~~~~  116 (353)
                      ..=||--||+++++  ||++|+++|.     +|+..  .+  ++..||+..+|+  +++| .|.|||.....        
T Consensus        11 ~~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g--~~--~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~--------   72 (374)
T 2iu8_A           11 SSGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG--NG--ATLLSGVEEIEEAKTAHI-TFLDNEKYAKH--------   72 (374)
T ss_dssp             ----------CCSCCEEHHHHHHHTT-----CEEES--CT--TCEECEECCTTTCCTTEE-EECCSSSTHHH--------
T ss_pred             ccCcccCccccccCcCcHHHHHHhhC-----CEEEC--CC--cceEEEEeccccCCCCeE-EEEeCchhhhh--------
Confidence            34578889999997  9999999984     36653  22  367899888874  4577 99999975321        


Q ss_pred             ccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEEEecceEeE
Q 018622          117 LLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWED  183 (353)
Q Consensus       117 ~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~~~~g~w~d  183 (353)
                                  ..+.++|+|+|++++|+.+.        ++ .+++| ++.+.+..+|....+|++
T Consensus        73 ------------~~~~~aGiyI~~~~~l~~~~--------~~-~~~~p-l~~~~~~~a~~~~~~~~~  117 (374)
T 2iu8_A           73 ------------LKSSEAGAIIISRTQFQKYR--------DL-NKNFL-ITSESPSLVFQKCLELFI  117 (374)
T ss_dssp             ------------HHTCCCSEEEEEHHHHHTST--------TS-CSCEE-EESSCHHHHHHHHHTTTS
T ss_pred             ------------hhcCCcEEEEeChhHhhhcc--------cc-ccceE-EEeCCHHHHHHHHHHHhc
Confidence                        24679999999998875221        12 34566 555444444444444544

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=99.84  E-value=1.2e-20  Score=174.31  Aligned_cols=172  Identities=14%  Similarity=0.100  Sum_probs=127.2

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecC-HHHHHHHHHH---CCCcEEEEEEEeCCCCCCcc-----e
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD---RDADITISCAAVGESRASDY-----G   86 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~d-l~~~~~~h~~---~~a~~tll~~~~~~~~~~~~-----g   86 (353)
                      .+++||++||++|+++++       ++|+|++||++++.+ +++++++|.+   +++++++++.+++++ .+.|     |
T Consensus        98 ~~~~Gt~~al~~a~~~i~-------~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~-~~~~g~~~~G  169 (303)
T 3pnn_A           98 EKPWGTNHAVLMGRDAIR-------EPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNT-LSESGGVSRG  169 (303)
T ss_dssp             CSCCCHHHHHHTTTTTCC-------SCEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEEEEEEGGGS-CBTTBCEEEE
T ss_pred             cccCCcHHHHHHHHHhcC-------CCEEEEECCeecCHHHHHHHHHHHHHhccccCceEEEEEECCCc-cCccCceeee
Confidence            368899999999999885       789999999999886 9999999986   678899999987652 1455     6


Q ss_pred             EEEECCCCCeeEEEeCCCcccccc-ccccccccCCCcc-ccccCCcccceeeEEecHHHHHHHHH-------hhCC--CC
Q 018622           87 LVKIDNMGRIAQFAEKPSGANLKA-MQVDTSLLGFSPQ-EARKCPYVASMGVYVFKKDVLFKLLR-------WRYP--TS  155 (353)
Q Consensus        87 ~v~~d~~g~V~~~~ekp~~~~~~~-~~~~~~~~~~~~~-~~~~~~~l~~~Giyi~~~~vl~~~l~-------~~~~--~~  155 (353)
                      ++.+|++|+|+.|.|||..+.... +....    .... .....++++++|+|+|++++|+.+.+       +..+  ..
T Consensus       170 ~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~----~~g~~~~~~~~~~i~~GiY~f~~~~~~~l~~~~~~~l~~~~~~~~~  245 (303)
T 3pnn_A          170 VCQVDEKHLLTGVVERTGIERTDGTISFRD----ETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFINFLNAHGQEPKS  245 (303)
T ss_dssp             EEEECTTSBEEEEEEEEEEEEETTEEEEEC----TTSCEEEECTTCEEEEEEEEECTHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred             eEeeCCCCcEEEEEECCCCccccccccccc----cccccccCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHhcCCCcCC
Confidence            899998999999999996531100 00000    0000 00002579999999999999975432       1111  12


Q ss_pred             CchhhhhhhhhhhcC--cEEEEEecceEeEcCCHHHHHHHHHhhcc
Q 018622          156 NDFGSEIIPAAIMEH--DVQAYIFRDYWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       156 ~~~~~d~l~~l~~~~--~i~~~~~~g~w~dIgtp~~y~~a~~~ll~  199 (353)
                      ..++.|+++.+++++  ++.+|.++++|+|||||++|.+|++.+..
T Consensus       246 e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~  291 (303)
T 3pnn_A          246 EFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRE  291 (303)
T ss_dssp             CCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHH
T ss_pred             cEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHH
Confidence            234678999988886  79999999999999999999999987654

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=99.83  E-value=8.7e-20  Score=165.71  Aligned_cols=155  Identities=17%  Similarity=0.281  Sum_probs=130.8

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      ++++||+++|+.++.+++      +++|+|++||++++.++.++++.|+++++++++++.+.++  +..||++..| +|+
T Consensus       105 ~~~~G~~~al~~a~~~~~------~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d-~g~  175 (269)
T 4ecm_A          105 DKAGGIAQALGLCEDFVG------NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDD--PERFGVANIQ-NRK  175 (269)
T ss_dssp             SSCCCHHHHHHTTHHHHT------TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECSC--GGGSEEEEEE-TTE
T ss_pred             CccCcHHHHHHHHHHhcC------CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECCC--CCCceEEEEc-CCE
Confidence            567899999999999886      3899999999999999999999999999999999988776  6789999997 499


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-CC-chhhhhhhhhhhcCcEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SN-DFGSEIIPAAIMEHDVQ  173 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~~-~~~~d~l~~l~~~~~i~  173 (353)
                      |+.|.|||..+.                     ++++++|+|+|++++|+ .+++..+. .. -...++++.+++++++.
T Consensus       176 v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~-~l~~~~~~~~ge~~l~d~l~~l~~~g~v~  233 (269)
T 4ecm_A          176 IIEIEEKPKEPK---------------------SSYAVTGIYLYDSKVFS-YIKELKPSARGELEITDINNWYLKRGVLT  233 (269)
T ss_dssp             EEEEEESCSSCS---------------------CSEEEEEEEEECTTHHH-HHTSCCBCTTSCBCHHHHHHHHHHTTCEE
T ss_pred             EEEEEECCCCCC---------------------CcEEEEEEEEECHHHHH-hhhhcCCCCCCeeeHHHHHHHHHHcCCEE
Confidence            999999986432                     46899999999999996 45543221 11 22578999999888999


Q ss_pred             EEEecceEeEcCCHHHHHHHHHhhccCC
Q 018622          174 AYIFRDYWEDIGTIKSFYEANMALTKES  201 (353)
Q Consensus       174 ~~~~~g~w~dIgtp~~y~~a~~~ll~~~  201 (353)
                      ++.++++|.|||||++|.+|++.+++..
T Consensus       234 ~~~~~~~~~dIgt~~dl~~a~~~l~~~~  261 (269)
T 4ecm_A          234 YNEMSGWWTDAGTHVSLQRANALARDIN  261 (269)
T ss_dssp             EEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred             EEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999887653

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=99.80  E-value=1e-18  Score=161.31  Aligned_cols=158  Identities=22%  Similarity=0.247  Sum_probs=125.7

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEec--------CHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--------DYMDFIQSHVDRDADITISCAAVGESRASDYGL   87 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~--------dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~   87 (353)
                      ++++||++||+++++++.      +++|+|++||++++.        +++++++.|+++++ +|+++.+.++  ++.||+
T Consensus       110 ~~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~--~~~yg~  180 (302)
T 2e3d_A          110 GLAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPVAD--VTAYGV  180 (302)
T ss_dssp             SSCCCHHHHHHHTHHHHC------SSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-EEEEEEECSC--GGGSEE
T ss_pred             CccCCHHHHHHHHHHHcC------CCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-cEEEEEEccC--CCCccE
Confidence            567899999999999886      278999999999973        79999999988877 7888777644  678999


Q ss_pred             EEEC----CCC---CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--CCch
Q 018622           88 VKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF  158 (353)
Q Consensus        88 v~~d----~~g---~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~~~~  158 (353)
                      +..+    ++|   +|..|.|||.....                   .++++++|+|+|++++|+ .+++..+.  ..-+
T Consensus       181 v~~~~~~~~~g~~~~v~~~~ekp~~~~~-------------------~~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~  240 (302)
T 2e3d_A          181 VDCKGVELAPGESVPMVGVVEKPKADVA-------------------PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQ  240 (302)
T ss_dssp             EECTTCCCCTTCEEEECEEEESCCTTTC-------------------SCSEEEEEEEEECTTHHH-HHTCCCC----CCC
T ss_pred             EEecccccCCCCceeEEEEEECCCCCcc-------------------ccceEEEEEEEECHHHHH-HHHhhCCCCCCcee
Confidence            9874    457   89999999864221                   246899999999999886 45543321  1123


Q ss_pred             hhhhhhhhhhcCcEEEEEecceEeEcCCHHHHHHHHHhhccCCC
Q 018622          159 GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESP  202 (353)
Q Consensus       159 ~~d~l~~l~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~  202 (353)
                      ..++++.+++++++.+|.++++|.|||||++|++|++.++...+
T Consensus       241 l~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~~~  284 (302)
T 2e3d_A          241 LTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHN  284 (302)
T ss_dssp             HHHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhcCc
Confidence            46888888877899999999999999999999999977765443

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=99.79  E-value=1.5e-18  Score=156.36  Aligned_cols=150  Identities=17%  Similarity=0.279  Sum_probs=123.7

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      +..+||+++|+.|++++..     +++|++++||++++.++.++++.|+++++++|+...+  +  ++.||++.+| +|+
T Consensus       103 ~~~~gt~~al~~a~~~~~~-----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~~--~--~~~~g~v~~~-~g~  172 (259)
T 1tzf_A          103 GDSSMTGGRLKRVAEYVKD-----DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--P--PGRFGALDIQ-AGQ  172 (259)
T ss_dssp             CSSCCHHHHHHHTGGGTTT-----SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEEC--C--CCCSEEEEEE-TTE
T ss_pred             ccccCcHHHHHHHHHhcCC-----CCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEec--C--CCCccEEEEc-CCE
Confidence            3468999999999988841     3789999999999999999999999888888875433  2  5679999988 799


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY  175 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~  175 (353)
                      |..|.|||..+                      .+++++|+|+|++++|+ .+++   ...++..++++.+++++++.+|
T Consensus       173 v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~-~l~~---~~~~~~~~~i~~~~~~~~v~~~  226 (259)
T 1tzf_A          173 VRSFQEKPKGD----------------------GAMINGGFFVLNPSVID-LIDN---DATTWEQEPLMTLAQQGELMAF  226 (259)
T ss_dssp             EEEEEESCSCC----------------------SCCEECCCEEECGGGGG-GCCS---TTCCTTTHHHHHHHHTTCEEEE
T ss_pred             EEEEEecCCCC----------------------CceEEEEEEEeCHHHHH-hhcc---cccccHHHHHHHHHHcCCEEEE
Confidence            99999998642                      25889999999999885 3322   2234567888888888899999


Q ss_pred             EecceEeEcCCHHHHHHHHHhhccCC
Q 018622          176 IFRDYWEDIGTIKSFYEANMALTKES  201 (353)
Q Consensus       176 ~~~g~w~dIgtp~~y~~a~~~ll~~~  201 (353)
                      .++++|.|||||++|.++++.+....
T Consensus       227 ~~~~~~~dI~t~~d~~~a~~~~~~~~  252 (259)
T 1tzf_A          227 EHPGFWQPMDTLRDKVYLEGLWEKGK  252 (259)
T ss_dssp             EECSCEEECCSHHHHHHHHHHHHTTC
T ss_pred             EeCcEEEeCCCHHHHHHHHHHHhcCC
Confidence            99999999999999999999887643

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=99.78  E-value=1e-18  Score=160.90  Aligned_cols=160  Identities=17%  Similarity=0.199  Sum_probs=108.7

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe---cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR---MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN   92 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~---~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~   92 (353)
                      ++++||+++|++++++++      +++|+|++||++++   .+++++++.|+++++ .++++.+.+.+.+..||++.+|+
T Consensus       114 ~~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~  186 (297)
T 2ux8_A          114 QEPMGLGHAVWCARDIVG------DEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGT  186 (297)
T ss_dssp             CSCCCHHHHHHTTHHHHC------SSCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-----------CCCCCC
T ss_pred             CCCCChHHHHHHHHHHcC------CCcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEecCcccCCCCCeEEecc
Confidence            567899999999999885      37899999999988   679999999988776 67777665433367899888763


Q ss_pred             --CC--CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--CCchhhhhhhhh
Q 018622           93 --MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAA  166 (353)
Q Consensus        93 --~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~~~~~~d~l~~l  166 (353)
                        ++  +|..|.|||.....                   .++++++|+|+|++++|+ .+++..+.  ..-...++++.+
T Consensus       187 ~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l  246 (297)
T 2ux8_A          187 QDGVLTEVKGLVEKPAPGTA-------------------PSNLSVIGRYILQPEVMR-ILENQGKGAGGEIQLTDAMQRM  246 (297)
T ss_dssp             BCSSEEEC---------------------------------CCCEEEEEEECTHHHH-HHHHTC--------CCTTGGGG
T ss_pred             cCCCceeEEEEEECCCCCCC-------------------CccEEEEEEEEECHHHHH-HHHhhCCCCCCeeEHHHHHHHH
Confidence              55  89999999853221                   246899999999999886 45543321  111246788888


Q ss_pred             hhcCcEEEEEecceEeEcCCHHHHHHHHHhhccCCC
Q 018622          167 IMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESP  202 (353)
Q Consensus       167 ~~~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~  202 (353)
                      ++++++.++.++++|.|||||++|++|++.++...+
T Consensus       247 ~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~~  282 (297)
T 2ux8_A          247 IGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSRP  282 (297)
T ss_dssp             TTTSCEEEEECSSEEEETTSHHHHHHHHHHHHHHCT
T ss_pred             HhcCCEEEEEecceEEeCCCHHHHHHHHHHHHhcCh
Confidence            888899999999999999999999999988776543

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.76  E-value=8.8e-18  Score=156.50  Aligned_cols=161  Identities=22%  Similarity=0.294  Sum_probs=125.2

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEe--cCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEEC--
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID--   91 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~--~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d--   91 (353)
                      ++++||+++|++++.++.+    ..+.|+|++||++++  .+++++++.|++.++ .++++.+++.+.+..||++.+|  
T Consensus       113 ~~~~Gt~~al~~a~~~l~~----~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~  187 (323)
T 2pa4_A          113 DKPLGLGHAVGLAESVLDD----DEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEAD  187 (323)
T ss_dssp             SSCCCHHHHHHTTGGGSCS----SCCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEEEEECCGGGGGGSEEEEEEEC
T ss_pred             CccCCcHHHHHHHHHHhcC----CCCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEEEEEecccccCCccEEEeCCc
Confidence            5678999999999988852    123399999999997  679999999988776 5777776643336789999886  


Q ss_pred             --CCC--CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhh
Q 018622           92 --NMG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIP  164 (353)
Q Consensus        92 --~~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~  164 (353)
                        +++  +|..|.|||.....                   .++++++|+|+|++++|+. +++..+.   ..+ ..++++
T Consensus       188 ~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~~GiY~~~~~~~~~-l~~~~~~~~ge~~-l~d~i~  246 (323)
T 2pa4_A          188 TKDSDVKKVKGMVEKPAIEDA-------------------PSRLAATGRYLLDRKIFDA-LRRITPGAGGELQ-LTDAID  246 (323)
T ss_dssp             CSSTTEEEEEEEEESCCTTTC-------------------SCSEEEEEEEEEETHHHHH-HHHCCCCGGGCCC-HHHHHH
T ss_pred             ccCCCceeEEEEEECCCCccc-------------------cccEEEEEEEEECHHHHHH-HHhhCCCCCCeEe-HHHHHH
Confidence              454  99999999853221                   2468899999999998864 4543322   222 368898


Q ss_pred             hhhhc-CcEEEEEecceEeEcCCHHHHHHHHHhhccCCC
Q 018622          165 AAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESP  202 (353)
Q Consensus       165 ~l~~~-~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~  202 (353)
                      .++++ .++.+|.++++|.|||||++|.+|++.++...+
T Consensus       247 ~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~~  285 (323)
T 2pa4_A          247 LLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHP  285 (323)
T ss_dssp             HHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTCT
T ss_pred             HHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcCh
Confidence            88887 799999999999999999999999988876544

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=99.74  E-value=1.1e-17  Score=150.52  Aligned_cols=151  Identities=13%  Similarity=0.136  Sum_probs=113.1

Q ss_pred             CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      +++++|||+||++|++++.+.....+++|+|++||+++ +.++.++     .+++++++++.+.++  + +||++..|++
T Consensus        81 ~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~--p-~yG~v~~d~~  152 (255)
T 4evw_A           81 HTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGG--D-NWSFAKPEHA  152 (255)
T ss_dssp             SSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCS--S-CSCEEEESST
T ss_pred             CCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCC--C-ceeEEEECCC
Confidence            36788999999999999931000124789999999998 5666553     256778999988765  4 8999999988


Q ss_pred             C--CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHH-HHHHHHHh----hCC---CCCchhhhhh
Q 018622           94 G--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRW----RYP---TSNDFGSEII  163 (353)
Q Consensus        94 g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~-vl~~~l~~----~~~---~~~~~~~d~l  163 (353)
                      |  +|++|.||+..                       ++++++|+|+|++. .|...+.+    ..+   ....+.+|++
T Consensus       153 g~~~V~~i~EK~~~-----------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i  209 (255)
T 4evw_A          153 GSTKVIQTAEKNPI-----------------------SDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLY  209 (255)
T ss_dssp             TCCBEEEEESSSCS-----------------------SSEEEEEEEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHH
T ss_pred             CCeEEEEEEeccCc-----------------------cCcEEEeEEEECcHHHHHHHHHHHHhcccccccCCeEehHHHH
Confidence            8  99999999431                       46899999999986 33323322    111   2233567899


Q ss_pred             hhhhhcC-cEEEEEec-ceEeEcCCHHHHHHHHHh
Q 018622          164 PAAIMEH-DVQAYIFR-DYWEDIGTIKSFYEANMA  196 (353)
Q Consensus       164 ~~l~~~~-~i~~~~~~-g~w~dIgtp~~y~~a~~~  196 (353)
                      +.+++++ ++.++.++ ++|.|+|||++|.++...
T Consensus       210 ~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~  244 (255)
T 4evw_A          210 NELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQ  244 (255)
T ss_dssp             HHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC
T ss_pred             HHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhc
Confidence            9998774 78999985 999999999999988643

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=99.73  E-value=1.6e-16  Score=145.87  Aligned_cols=153  Identities=23%  Similarity=0.325  Sum_probs=123.4

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      +.++||+++++.+++++.+      ++|++++||.++ +.++.++++.|.+++.++++++.++.+  +.+||++.+|++|
T Consensus        83 ~~~~G~~~al~~a~~~i~~------~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p~~~g~v~~d~~g  154 (293)
T 1fxo_A           83 PSPDGLAQAFLIGESFIGN------DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGG  154 (293)
T ss_dssp             SSCCCGGGHHHHTHHHHTT------SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSC--GGGSEEEEECTTS
T ss_pred             CCCCCHHHHHHHHHHHhCC------CCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECCC--cccCcEEEECCCC
Confidence            4578999999999999862      789999999865 678999999998777788888887766  6789999999999


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-CCc-hhhhhhhhhhhcCcE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SND-FGSEIIPAAIMEHDV  172 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~~~-~~~d~l~~l~~~~~i  172 (353)
                      +++.|.|||..+.                     ++++++|+|+|++++|+. +.+..+. ..+ ..+|+++.+++++++
T Consensus       155 ~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~-~~~~~~~~~ge~~~td~~~~~l~~g~~  212 (293)
T 1fxo_A          155 KAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVDI-ARDLKPSPRGELEITDVNRAYLERGQL  212 (293)
T ss_dssp             CEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHHH-HHHCCCCTTSSCCHHHHHHHHHHTTCE
T ss_pred             cEEEEEECCCCCC---------------------CCeEEEEEEEEcHHHHHH-HHhcCcccCCceeHHHHHHHHHhcCCe
Confidence            9999999986432                     468999999999999874 4443322 111 246788888888888


Q ss_pred             EEEEec-c-eEeEcCCHHHHHHHHHhhc
Q 018622          173 QAYIFR-D-YWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       173 ~~~~~~-g-~w~dIgtp~~y~~a~~~ll  198 (353)
                      .++.+. + .|.|+|||++|.+|+..+.
T Consensus       213 ~v~~~~~g~~w~Digt~edl~~a~~~~~  240 (293)
T 1fxo_A          213 SVEIMGRGYAWLDTGTHDSLLEAGQFIA  240 (293)
T ss_dssp             EEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence            888875 7 4999999999999987654

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=99.71  E-value=2.7e-16  Score=144.42  Aligned_cols=152  Identities=20%  Similarity=0.311  Sum_probs=122.3

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      +.++||++|++.+++++.+      +++++++||.++ +.++.++++.|.+++..+++++.++.+  +.+||++.+|++|
T Consensus        84 ~~~~G~~~al~~a~~~i~~------~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p~~~g~v~~d~~g  155 (295)
T 1lvw_A           84 EEPRGIADAFIVGKDFIGD------SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD--PRPFGVVEFDSEG  155 (295)
T ss_dssp             SSCCCGGGHHHHTHHHHTT------SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSC--CTTSEEEEECTTS
T ss_pred             CCCCChHHHHHHHHHHhCC------CcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECCC--cccCCEEEECCCC
Confidence            4467999999999999862      678888899864 689999999998777788888888766  6689999999999


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC---CCchhhhhhhhhhhcCc
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---SNDFGSEIIPAAIMEHD  171 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~---~~~~~~d~l~~l~~~~~  171 (353)
                      +|+.|.|||..+.                     ++++++|+|+|++++|+. +.+..+.   ..+ .+|+++.++++++
T Consensus       156 ~v~~~~ekp~~~~---------------------s~~~~~Giy~f~~~~l~~-~~~~~~~~~ge~~-~td~~~~~l~~g~  212 (295)
T 1lvw_A          156 RVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVEI-ARRIEPSDRGELE-ITSVNEEYLRMGK  212 (295)
T ss_dssp             BEEEEEESCSSCS---------------------CSEECCSEEEECTTHHHH-HHHCCCCTTSCCC-HHHHHHHHHHTTC
T ss_pred             cEEEEEECCCCCC---------------------CCEEEEEeEEEcHHHHHH-HHhcCCcccCcee-HHHHHHHHHHcCC
Confidence            9999999986442                     368999999999999874 4433222   122 4678888888888


Q ss_pred             EEEEEec-c-eEeEcCCHHHHHHHHHhhc
Q 018622          172 VQAYIFR-D-YWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       172 i~~~~~~-g-~w~dIgtp~~y~~a~~~ll  198 (353)
                      +.++.+. + .|.|+|||++|.+|+..+.
T Consensus       213 ~~v~~~~~g~~w~Digt~edl~~a~~~~~  241 (295)
T 1lvw_A          213 LRVELMGRGMAWLDTGTHDGLLEASSFIE  241 (295)
T ss_dssp             EEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred             cEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence            8888775 6 4999999999999987654

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=99.70  E-value=2.6e-17  Score=152.32  Aligned_cols=162  Identities=18%  Similarity=0.340  Sum_probs=107.1

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE-ecC-HHHHHHH---HHHCCCcEEEEEEEeCCCCCCcceEEEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQS---HVDRDADITISCAAVGESRASDYGLVKI   90 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~-~~d-l~~~~~~---h~~~~a~~tll~~~~~~~~~~~~g~v~~   90 (353)
                      +.++||+++|+.++.++..     ++.|+|++||+++ +.+ |.++++.   |.++++++|+++.+..+  +..||++.+
T Consensus        85 ~~~~gt~~al~~a~~~l~~-----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~g~i~~  157 (308)
T 2qh5_A           85 SLSKNTANAIALSALMSDK-----EDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKP--NTEFGYIES  157 (308)
T ss_dssp             SSCCCHHHHHHHHHHTSCT-----TSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSC--CTTSEEEEC
T ss_pred             CCCCChHHHHHHHHHHhCC-----CCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCC--CCCceEEEE
Confidence            4567999999999988841     3569999999998 677 9999987   77788888998887655  578999998


Q ss_pred             CCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--------------C-
Q 018622           91 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--------------S-  155 (353)
Q Consensus        91 d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--------------~-  155 (353)
                      |++++|+.|.|||.....+...             ...++++++|+|+|++++|...+++..+.              . 
T Consensus       158 d~~~~V~~~~Ekp~~~~~~~~~-------------~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~  224 (308)
T 2qh5_A          158 PNGLDVKRFIEKPSLDKAIEFQ-------------KSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAY  224 (308)
T ss_dssp             SSSSBCSEEEESCCHHHHHHHH-------------HHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEEC
T ss_pred             CCCCEEEEEEECCChHHHHHHh-------------hcCCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhcccccc
Confidence            8779999999999754321100             00146899999999999864444432211              0 


Q ss_pred             ---Cchh---hhhhhh---------hhhc-CcEEEEEecceEeEcCCHHHHHHHHHhh
Q 018622          156 ---NDFG---SEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       156 ---~~~~---~d~l~~---------l~~~-~~i~~~~~~g~w~dIgtp~~y~~a~~~l  197 (353)
                         .++.   .++++.         ++++ .++.++.++++|.|+|||++|++++...
T Consensus       225 ~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~  282 (308)
T 2qh5_A          225 FFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE  282 (308)
T ss_dssp             CSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred             ccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence               1111   344442         4554 6899999999999999999999987644

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=99.70  E-value=1.4e-16  Score=146.47  Aligned_cols=154  Identities=19%  Similarity=0.266  Sum_probs=122.8

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      +.++||++|++.+++++.+      +++++++||.++ +.++.++++.|.+++.++++++.++.+  +.+||++.+|++|
T Consensus        84 ~~~~G~~~al~~a~~~i~~------~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p~~yg~v~~d~~g  155 (296)
T 1mc3_A           84 PSPDGLAQAFIIGETFLNG------EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD--PERFGVVEFDDNF  155 (296)
T ss_dssp             SSCCCSTHHHHHTHHHHTT------SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC--CSSSBBCEEETTE
T ss_pred             CCCCCHHHHHHHHHHHhCC------CCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECCC--cccCCEEEECCCC
Confidence            4568999999999999862      678888899865 678999999998777788888887766  6689999999899


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-CCc-hhhhhhhhhhhcCcE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SND-FGSEIIPAAIMEHDV  172 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~~~-~~~d~l~~l~~~~~i  172 (353)
                      +|+.|.|||..+.                     ++++++|+|+|++++|+. ++...+. ..+ ..+|+++.+++++++
T Consensus       156 ~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~-~~~~~~~~~ge~~~td~~~~~l~~g~~  213 (296)
T 1mc3_A          156 RAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVEY-AKQVKPSERGELEITSINQMYLEAGNL  213 (296)
T ss_dssp             EEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHHH-HHSCCCCSSSSCCHHHHHHHHHHTTCE
T ss_pred             cEEEEEECCCCCC---------------------CCEEEEEEEEEcHHHHHH-HHhcCccccCCccHHHHHHHHHhcCCe
Confidence            9999999986442                     468999999999999864 4443322 111 246788888888888


Q ss_pred             EEEEec-ce-EeEcCCHHHHHHHHHhhcc
Q 018622          173 QAYIFR-DY-WEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       173 ~~~~~~-g~-w~dIgtp~~y~~a~~~ll~  199 (353)
                      .++.+. ++ |.|+|||++|.+|+..+..
T Consensus       214 ~v~~~~~g~~w~Digt~edl~~a~~~~~~  242 (296)
T 1mc3_A          214 TVELLGRGFAWLDTGTHDSLIEASTFVQT  242 (296)
T ss_dssp             EEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence            888875 74 9999999999999876653

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.67  E-value=4.7e-18  Score=165.13  Aligned_cols=250  Identities=9%  Similarity=0.010  Sum_probs=151.1

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEe----CCeEEecCHHHHHHHHHHC--C---------CcEEEEEEEeCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILC----GDHLYRMDYMDFIQSHVDR--D---------ADITISCAAVGES   80 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~----gD~i~~~dl~~~~~~h~~~--~---------a~~tll~~~~~~~   80 (353)
                      +.++||+++++.+.+.+.       + ++|++    +|...++++++++..|.++  +         ...++.+..+.+.
T Consensus       121 ~~pL~~a~~i~~~d~~~~-------~-t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~L~~l~d~  192 (496)
T 3c8v_A          121 MIPLHDDEVITIKDSFLN-------K-TLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVDLSTIHNS  192 (496)
T ss_dssp             EEECSSCCEEEEESCEEE-------S-CEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEESCEEESC
T ss_pred             ccchhHhhhHHhhhhcCC-------c-eEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceeeHHHHHHH
Confidence            568899998655543221       2 38888    6888888888887778753  2         2445555555442


Q ss_pred             CCCcceEEEECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhh
Q 018622           81 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGS  160 (353)
Q Consensus        81 ~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~  160 (353)
                      -...|+.+.   .|++..+.++|.....                   .+......+|.|++++|+.++....        
T Consensus       193 li~~~~~~~---~g~i~~~~~~pg~~~i-------------------~~~~~lnf~Y~f~~~~L~~~l~~~~--------  242 (496)
T 3c8v_A          193 VVRYFSYVQ---TGELVGKCVEPGQIWI-------------------KSGDELEFHYSFDKAILDKYISQEA--------  242 (496)
T ss_dssp             EECTTCEEE---SSEEESCEECTTEEEE-------------------ECTTSEEEEEECCHHHHTTTCBCCT--------
T ss_pred             HHHHHhhhc---CCceEEeeecCCceec-------------------ccccccceEEEcCHHHHHHHHhhcc--------
Confidence            114677663   4777777777753110                   1223455599999988864332110        


Q ss_pred             hhhhhhhhcCcEEEEEecceEeEc--CCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEeceeeeceEECCC
Q 018622          161 EIIPAAIMEHDVQAYIFRDYWEDI--GTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHG  238 (353)
Q Consensus       161 d~l~~l~~~~~i~~~~~~g~w~dI--gtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~  238 (353)
                              ...     .++.|.|+  +.+++++++.......        +...+.+++.+.|.+.+.    .++.||++
T Consensus       243 --------~~n-----~~g~~~Dll~~~~~d~~~i~~~~~~~--------~~~~I~~~a~I~p~a~i~----g~v~IG~~  297 (496)
T 3c8v_A          243 --------GSC-----PTGVLMEFVEVRQEDFEEVFASGHMA--------SGAGSASGASVSGYAVIK----GDTVIGEN  297 (496)
T ss_dssp             --------TSC-----CBSHHHHHHHTTTHHHHHHHHC----------------CCTTCEECTTSEEE----SSCEECTT
T ss_pred             --------Ccc-----ccceeeehhccchHHHHHHhhccccc--------cCcccCCCcEECCCcEEe----CCeEECCC
Confidence                    000     12334343  3455555433221110        112222233333333333    26788888


Q ss_pred             cEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEc
Q 018622          239 CFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV  317 (353)
Q Consensus       239 ~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~  317 (353)
                      |.|+ ++.|.+++||++|.|+++|+|.++++.++                   +.|++++.|.+++||++|.||++++|.
T Consensus       298 ~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~-------------------~~Ig~~a~I~gv~IGd~v~IG~~a~I~  358 (496)
T 3c8v_A          298 VLVSQRAYLDNAWMGKGSNAQENCYIINSRLERN-------------------CVTAHGGKIINAHLGDMIFTGFNSFLQ  358 (496)
T ss_dssp             CEECTTCEEEEEEECTTCEECTTCEEEEEEEEES-------------------CEECTTCEEESEEEEETCEECTTCEEE
T ss_pred             CEECCCcEEeceEecCCCEECCCceEeceEeCCC-------------------CEECCCcEEcCceECCCcEECCCCEEe
Confidence            8888 67778899999999999999998888877                   899999999999999999999999998


Q ss_pred             cC----CCcccccCCCCceEEc--cCeEEecCCcEEC
Q 018622          318 NK----DDVQEADRPELGFYIR--SGITIIMEKATIE  348 (353)
Q Consensus       318 ~~----~~~~~~~~~~~~~~i~--~~~~vig~~~~i~  348 (353)
                      ++    ..+++.+.++.++.|.  .+ ..|++++.++
T Consensus       359 ~~~~~~v~IG~~a~IGagsvV~~~~~-~~I~~~s~v~  394 (496)
T 3c8v_A          359 GSESSPLKIGDGCVVMPHTIIDLEEP-LEIPAGHLVW  394 (496)
T ss_dssp             CCSSSCEEECTTCEECTTCEEECSSC-EEECSSEEEC
T ss_pred             CCCCcceEECCCCEECCCCEEecCCC-cEeCCCCEEE
Confidence            76    4444444444444444  33 2334444443

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=99.64  E-value=2.4e-16  Score=147.37  Aligned_cols=158  Identities=20%  Similarity=0.241  Sum_probs=113.6

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEec--CH----HHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DY----MDFIQSHVDRDADITISCAAVGESRASDYGLVK   89 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~--dl----~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~   89 (353)
                      +.++||++|++.+..++.     .++.|+|++||+++..  +|    ++++++|+++++.+|+.+.+..+  .+.||++.
T Consensus        81 ~~~~gta~ai~~a~~~~~-----~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~--~~~yG~I~  153 (336)
T 2x65_A           81 PMKKNTAPACFIGTKLAD-----DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRP--ETGYGYIE  153 (336)
T ss_dssp             SSCCCHHHHHHHHHTTSC-----TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSC--CSSSEEEE
T ss_pred             CCCCCcHHHHHHHHHhhC-----CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccC--CCCceEEE
Confidence            446799999999887553     2467999999998754  44    44555677767788888777654  47899999


Q ss_pred             ECCC-----CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCC---------
Q 018622           90 IDNM-----GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS---------  155 (353)
Q Consensus        90 ~d~~-----g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~---------  155 (353)
                      .|++     ++|..|.|||..+.+++.             +....+++|+|+|+|++++|...+++..+..         
T Consensus       154 ~~~~~~~~~~~V~~f~EKp~~~~a~~~-------------~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~  220 (336)
T 2x65_A          154 IGEELEEGVHKVAQFREKPDLETAKKF-------------VESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDP  220 (336)
T ss_dssp             EEEEEETTEEEEEEEEESCCHHHHHHH-------------HHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTCCT
T ss_pred             ECCccCCCccEEEEEEECCChHHHHHH-------------HhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHhhh
Confidence            8764     799999999986532110             0012368999999999998844444432210         


Q ss_pred             -C-chhhhhhhh---------hhhc-CcEEEEEecceEeEcCCHHHHHHH
Q 018622          156 -N-DFGSEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEA  193 (353)
Q Consensus       156 -~-~~~~d~l~~---------l~~~-~~i~~~~~~g~w~dIgtp~~y~~a  193 (353)
                       . +|..+.++.         ++++ .++.+++++++|.|+|||++|+++
T Consensus       221 ~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~  270 (336)
T 2x65_A          221 RNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI  270 (336)
T ss_dssp             TCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred             hhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence             0 334566665         3444 789999999999999999999998

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.58  E-value=1.4e-16  Score=142.01  Aligned_cols=30  Identities=13%  Similarity=0.169  Sum_probs=21.4

Q ss_pred             hcCcEEEEEecce----EeEcCCHHHHHHHHHhhccC
Q 018622          168 MEHDVQAYIFRDY----WEDIGTIKSFYEANMALTKE  200 (353)
Q Consensus       168 ~~~~i~~~~~~g~----w~dIgtp~~y~~a~~~ll~~  200 (353)
                      ...++++|...++    |.|+++   |+++++.++..
T Consensus        37 ~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~   70 (240)
T 3r8y_A           37 ETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVD   70 (240)
T ss_dssp             TTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEE
T ss_pred             CcceEEEcCCCeEEEccHHHHHH---HHHhccceech
Confidence            4467777766665    888887   88888877643

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=99.58  E-value=2.8e-15  Score=140.22  Aligned_cols=159  Identities=21%  Similarity=0.299  Sum_probs=110.3

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEec--CHHH----HHHHHHHCCCcEEEEEEEeCCCCCCcceEEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DYMD----FIQSHVDRDADITISCAAVGESRASDYGLVK   89 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~--dl~~----~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~   89 (353)
                      +.++||++|+..+.. +..  ...++.|+|++||+++..  +|.+    ++++|++ ++.+|+.+.+..+  .+.||++.
T Consensus        79 ~~~~gta~ai~~a~~-l~~--~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~i~p~~~--~t~yG~I~  152 (337)
T 2cu2_A           79 PLGRDTAGAVLLGVA-EAL--KEGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALGLRPTRP--ETEYGYIR  152 (337)
T ss_dssp             SSCCHHHHHHHHHHH-HHH--HHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEEECCSSC--CSSSCEEE
T ss_pred             CCCCCcHHHHHHHHH-Hhc--cCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEeeccCCC--CCCceEEE
Confidence            457799999999887 642  112478999999998853  3444    4444544 6778888877655  56899999


Q ss_pred             ECCC----CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCC-ch------
Q 018622           90 IDNM----GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN-DF------  158 (353)
Q Consensus        90 ~d~~----g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~-~~------  158 (353)
                      .|++    ++|..|.|||..+.++.+             .... +++++|+|+|++++|...+++..+... .+      
T Consensus       153 ~~~~~~~~~~V~~f~EKp~~~~a~~~-------------~~~g-~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~  218 (337)
T 2cu2_A          153 LGPREGAWYRGEGFVEKPSYAEALEY-------------IRKG-YVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAG  218 (337)
T ss_dssp             EEEEETTEEEEEEEECCCCHHHHHHH-------------HHTT-CEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred             ECCcccccCeEEEEEeCCChHHHHHH-------------hhcC-CEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcC
Confidence            8765    799999999985432211             0001 689999999999988445554332110 00      


Q ss_pred             --hhhhhhh---------hhhc-CcEEEEEecceEeEcCCHHHHHHHH
Q 018622          159 --GSEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEAN  194 (353)
Q Consensus       159 --~~d~l~~---------l~~~-~~i~~~~~~g~w~dIgtp~~y~~a~  194 (353)
                        ..+.++.         ++++ .++.+++++++|.|+|||++|+++.
T Consensus       219 ~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~  266 (337)
T 2cu2_A          219 ASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF  266 (337)
T ss_dssp             CCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred             CcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence              1234443         3444 6899999999999999999999875

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.57  E-value=1.8e-14  Score=135.70  Aligned_cols=47  Identities=4%  Similarity=-0.107  Sum_probs=27.3

Q ss_pred             eEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeEEe
Q 018622          180 YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID  226 (353)
Q Consensus       180 ~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~i~  226 (353)
                      .|+-+.+|...+.....++...+....++|.+.+.+++.++++++|+
T Consensus        78 ~~i~~~~p~~~~~~~~~~~~~~~~~~~i~p~a~I~~~a~ig~~~~I~  124 (357)
T 4e79_A           78 NFIIVDNPYLAFAILTHVFDKKISSTGIESTARIHPSAVISETAYIG  124 (357)
T ss_dssp             EEEECSCHHHHHHHHHTTSSCCCCCCEECTTCEECTTCEECTTCEEC
T ss_pred             cEEEECCHHHHHHHHHHHhccccccCeeCCCCEECCCCEECCCCEEC
Confidence            56777888877766566665433224455655555555555555444

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.57  E-value=1.6e-14  Score=129.66  Aligned_cols=169  Identities=12%  Similarity=0.143  Sum_probs=117.3

Q ss_pred             CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcc-----eE
Q 018622           15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDY-----GL   87 (353)
Q Consensus        15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~-----g~   87 (353)
                      ++.++||++ +..+...++   ....+.|++++||.  +...+++++++.|.++++++++++.++++  +..|     |.
T Consensus        70 ~~~~~Gt~~-~~~~~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~--~~~~~~p~~g~  143 (252)
T 3oam_A           70 PNHQSGTER-LAEVVAKMA---IPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIED--EAEVFNPNAVK  143 (252)
T ss_dssp             TTCCSHHHH-HHHHHHHTT---CCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECC--HHHHTCTTSCE
T ss_pred             CCCCCcHHH-HHHHHHhcC---cCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCC--HHHhhCCCceE
Confidence            356789998 445555552   01247899999998  55778999999999888899999999876  5556     99


Q ss_pred             EEECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhh----hhh
Q 018622           88 VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGS----EII  163 (353)
Q Consensus        88 v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~----d~l  163 (353)
                      |.+|++|+++.|.+||-........-..        ......++.++|+|+|++++|+.+.... +.  ++..    +.+
T Consensus       144 vv~d~~g~v~~fsr~~i~~~~~~~~~~~--------~~~~~~~~~n~GiY~~~~~~l~~~~~~~-~~--~~e~~E~le~l  212 (252)
T 3oam_A          144 VITDKSGYALYFSRATIPWDRDNFAKAD--------KAIVQPLLRHIGIYAYRAGFINTYLDWQ-PS--QLEKIECLEQL  212 (252)
T ss_dssp             EEECTTSBEEEEESSCSSCCHHHHHSSS--------CCCCSCEEEEEEEEEEETTHHHHHHHSC-CC--HHHHHHTCTTH
T ss_pred             EEECCCCeEEEEeCCCCCCCCCcccccc--------ccccccceEEEEEEEcCHHHHHHHHcCC-CC--cccccchhHHH
Confidence            9999999999999987432210000000        0000247899999999999998765432 21  1111    223


Q ss_pred             hhhhhcCcEEEEEec-ceEeEcCCHHHHHHHHHhhccC
Q 018622          164 PAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKE  200 (353)
Q Consensus       164 ~~l~~~~~i~~~~~~-g~w~dIgtp~~y~~a~~~ll~~  200 (353)
                      ..+-...+|.++..+ .+|.||+||++|.+|++.+..+
T Consensus       213 r~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r  250 (252)
T 3oam_A          213 RVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER  250 (252)
T ss_dssp             HHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             HHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence            322234689998764 5789999999999999877643

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.55  E-value=1.5e-14  Score=132.15  Aligned_cols=144  Identities=10%  Similarity=0.156  Sum_probs=86.2

Q ss_pred             ccCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEec------------eEEE
Q 018622          206 FYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD------------TVML  269 (353)
Q Consensus       206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~------------~v~~  269 (353)
                      .++|.+.|.+++.+++++.|+. +.|. ++.||++|.|+ ++.|. ++.||++|.|+++|.|..            .+.+
T Consensus        24 ~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~I  103 (283)
T 4eqy_A           24 RIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVI  103 (283)
T ss_dssp             CBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCCCCCEEEE
T ss_pred             ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccCCCceEEE
Confidence            3556666666666666666653 5553 56667777776 45554 577777777777777731            2222


Q ss_pred             C-CccccchhHHH---------HhhcCCCcceEeCCCeEE-cceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCe
Q 018622          270 G-ADYYQTESEIA---------SLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI  338 (353)
Q Consensus       270 ~-~~~~~~~~~~~---------~~~~~~~~~~~ig~~~~i-~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~  338 (353)
                      + +..++..+.+.         +.++++   +.|+++++| .+|+||+++.|+.++.+.+...+++.++++.++.|..+ 
T Consensus       104 G~~~~Ig~~~~I~~g~~~~~~~~~IG~~---~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~-  179 (283)
T 4eqy_A          104 GDRNTIREFTTIHTGTVQDAGVTTLGDD---NWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQY-  179 (283)
T ss_dssp             CSSCEECTTEEEECCCTTTTSEEEECSS---CEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT-
T ss_pred             CCCcccCcceeEccceecCCCceEECCC---cEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCC-
Confidence            2 22222222211         333333   555556666 36677777777777777666667777777777777666 


Q ss_pred             EEecCCcEECCCccC
Q 018622          339 TIIMEKATIEDGMVI  353 (353)
Q Consensus       339 ~vig~~~~i~~g~vv  353 (353)
                      +.||++++|+++++|
T Consensus       180 v~Ig~~~vvg~~s~V  194 (283)
T 4eqy_A          180 VRIGAHSMLGGASAL  194 (283)
T ss_dssp             CEECTTCEECTTCEE
T ss_pred             eEECCCcEECCCCeE
Confidence            345888888888764

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.55  E-value=4.3e-14  Score=133.65  Aligned_cols=46  Identities=13%  Similarity=0.053  Sum_probs=26.4

Q ss_pred             EeEcCCHHHHHHHHHhhccCCC-cccccCCCCceecCCCCCCCeEEe
Q 018622          181 WEDIGTIKSFYEANMALTKESP-AFHFYDPKTPFYTSPRFLPPTKID  226 (353)
Q Consensus       181 w~dIgtp~~y~~a~~~ll~~~~-~~~~~~~~~~i~~~~~i~~~~~i~  226 (353)
                      ++-+.+|+..+.....++...+ ....++|.+.+.+++.++++++|+
T Consensus        95 ~l~~~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I~  141 (372)
T 3pmo_A           95 ALVVANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVG  141 (372)
T ss_dssp             EEECSCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTCEEC
T ss_pred             EEEECCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCCEEC
Confidence            5667778777765556665433 223456666666555555555554

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.54  E-value=1.8e-14  Score=129.00  Aligned_cols=136  Identities=17%  Similarity=0.289  Sum_probs=95.9

Q ss_pred             HHHhhccCCCc--ccccCCCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe-----eeEEcCCcEECCCCEEe
Q 018622          193 ANMALTKESPA--FHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELK  264 (353)
Q Consensus       193 a~~~ll~~~~~--~~~~~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~-----~~~ig~~~~ig~~~~i~  264 (353)
                      +++.++.+.|.  +..++....+.+++.+.|++.|.+    ++.||++|.|+ ++.|.     +++||++|.|+++|.|.
T Consensus        40 ~~~~~~~~~p~~~~~~~~~~~~I~~~~~I~~~a~I~g----~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~  115 (247)
T 1qre_A           40 DEFSNIRENPVTPWNPEPSAPVIDPTAYIDPQASVIG----EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLH  115 (247)
T ss_dssp             CCCCSEECCCCBTTBSSCCCCEECTTCEECTTCEEEE----SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEE
T ss_pred             hhhhhccCCCCccccccCCCcEECCCcEECCCCEEeC----CcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEE
Confidence            44455544443  233344556667777777776653    45555555555 34443     34899999999999997


Q ss_pred             ce-----------------------EEECCccccchhHHHHhhcCCCcceEeCCCeEEcc-eEeCCCCEECCCeEEccCC
Q 018622          265 DT-----------------------VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKD  320 (353)
Q Consensus       265 ~~-----------------------v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-~iig~~~~Ig~~~~i~~~~  320 (353)
                      ..                       ++++++                  +.|++++.|.+ ++||++|.||+++++.+ .
T Consensus       116 ~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~------------------v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v  176 (247)
T 1qre_A          116 ALETINEEGEPIEDNIVEVDGKEYAVYIGNN------------------VSLAHQSQVHGPAAVGDDTFIGMQAFVFK-S  176 (247)
T ss_dssp             ECCSBCTTSCBCGGGCEEETTEEESEEECTT------------------CEECTTCEEEEEEEECTTCEECTTCEEEE-E
T ss_pred             ecccccccCcccccceeeccCccCceEECCC------------------CEECCCCEEcCCcEECCCCEECCCCEEec-e
Confidence            53                       444443                  89999999997 99999999999999987 6


Q ss_pred             CcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          321 DVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       321 ~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      .+++.+.++.+++| .+ +.|+++++|++|++|
T Consensus       177 ~Ig~~~~IgagsvV-~~-~~I~~~~~v~~g~vv  207 (247)
T 1qre_A          177 KVGNNCVLEPRSAA-IG-VTIPDGRYIPAGMVV  207 (247)
T ss_dssp             EECTTCEECTTCEE-ES-CEECTTBEECTTCEE
T ss_pred             EECCCCEECCCCEE-CC-eEeCCCCEECCCCEE
Confidence            67777777777777 44 456999999988864

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.54  E-value=6e-14  Score=131.36  Aligned_cols=61  Identities=8%  Similarity=0.087  Sum_probs=34.0

Q ss_pred             eEcCCHHHHHHHHHhhccCCC-cccccCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC
Q 018622          182 EDIGTIKSFYEANMALTKESP-AFHFYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR  242 (353)
Q Consensus       182 ~dIgtp~~y~~a~~~ll~~~~-~~~~~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~  242 (353)
                      +-+.+|+..+.....++...+ ....++|.+.+.+++.++++++|+. +.|. ++.||++|+|+
T Consensus        74 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~  137 (341)
T 3eh0_A           74 LVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIG  137 (341)
T ss_dssp             EECSCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEeCCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEEC
Confidence            556788876665555555432 2234566666666666666665543 4443 34444444444

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.54  E-value=2.6e-14  Score=129.34  Aligned_cols=62  Identities=10%  Similarity=0.124  Sum_probs=44.2

Q ss_pred             eEeCCCeEE-cceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          291 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       291 ~~ig~~~~i-~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +.|+++++| .+|.||+++.|+.++.+.++..+++.++++.++.|..++ .||++++|+++++|
T Consensus       115 ~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v-~Ig~~a~Vg~~s~V  177 (266)
T 3r0s_A          115 AFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV-KVGEGCMIAGASAL  177 (266)
T ss_dssp             CEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTC-EECTTCEECSSCBB
T ss_pred             ceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCc-EECCCCEEccCCeE
Confidence            566666666 367777777777777777666677777777777776663 45888888888875

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.53  E-value=4.1e-14  Score=128.21  Aligned_cols=143  Identities=13%  Similarity=0.187  Sum_probs=79.2

Q ss_pred             cCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEe------------ceEEEC
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK------------DTVMLG  270 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~------------~~v~~~  270 (353)
                      ++|.+.+.+++.+++++.|+. +.|. ++.||++|+|+ ++.|. ++.||++|.|+++|.|.            ..+.++
T Consensus         4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG   83 (270)
T 1j2z_A            4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG   83 (270)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEEC
Confidence            345555555555556665553 5553 56777777776 55665 67777777777777773            222222


Q ss_pred             -CccccchhHH---------HHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeE
Q 018622          271 -ADYYQTESEI---------ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT  339 (353)
Q Consensus       271 -~~~~~~~~~~---------~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~  339 (353)
                       ++.++..+.+         .+.++++   +.|+++++|. +|+||+++.|+.++.+.+...+++.+.++.++.|..++ 
T Consensus        84 ~~~~I~~~~~I~~~~~~~~~~~~IG~~---~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v-  159 (270)
T 1j2z_A           84 EDNLIREFCMINPGTEGGIKKTLIGDK---NLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFV-  159 (270)
T ss_dssp             SSCEECTTCEECCCCTTTTSEEEECSS---CEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTC-
T ss_pred             CCCEECCCeEEcCCeecCCccEEECCC---cEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCc-
Confidence             2222222111         1222222   3444444442 55555555555555555555556666666666666553 


Q ss_pred             EecCCcEECCCccC
Q 018622          340 IIMEKATIEDGMVI  353 (353)
Q Consensus       340 vig~~~~i~~g~vv  353 (353)
                      .||++++|+++++|
T Consensus       160 ~IG~~a~Ig~~s~V  173 (270)
T 1j2z_A          160 RIAKGCMIAGKSAL  173 (270)
T ss_dssp             EECTTCEECTTCEE
T ss_pred             EeCCceEEecCcEe
Confidence            45888888888764

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.51  E-value=5e-14  Score=127.36  Aligned_cols=62  Identities=16%  Similarity=0.081  Sum_probs=45.0

Q ss_pred             eEeCCCeEE-cceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          291 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       291 ~~ig~~~~i-~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +.|+++++| .+|+||+++.|+.++.+.+...+++.++|+.++.|..++ .||++++|+++++|
T Consensus       117 ~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v-~Ig~~~~i~~~svV  179 (265)
T 4e6u_A          117 NLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFC-KIDSYSMIGGASLI  179 (265)
T ss_dssp             CEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTC-EECTTCEECTTCEE
T ss_pred             cEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCc-EECCCCEEcCCCEE
Confidence            566666666 367777777777777777766677777777777777763 45888888888864

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.51  E-value=6.3e-14  Score=127.18  Aligned_cols=31  Identities=23%  Similarity=0.215  Sum_probs=18.9

Q ss_pred             cccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          322 VQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       322 ~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +++.+.||.++.|..++ .||++++|++|++|
T Consensus       173 Ig~~~~IG~~~~I~~g~-~IG~~~~IgagsvV  203 (273)
T 3fs8_A          173 IELFAVIAARSVVLPGI-HINEDALVGAGAVV  203 (273)
T ss_dssp             ECTTCEECTTCEECTTC-EECTTCEECTTCEE
T ss_pred             ECCCeEEcCCCEEcCCC-EECCCCEECCCCEE
Confidence            33444455555555552 46888888888875

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.50  E-value=1.6e-13  Score=123.67  Aligned_cols=141  Identities=11%  Similarity=0.187  Sum_probs=67.5

Q ss_pred             CCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEE-------------eceEEECC
Q 018622          209 PKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL-------------KDTVMLGA  271 (353)
Q Consensus       209 ~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i-------------~~~v~~~~  271 (353)
                      |.+.+.+++.+++++.|+. +.|. ++.||++|.|+ ++.|. ++.||++|.|+++|.|             ...+.+++
T Consensus         5 p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~   84 (259)
T 3hsq_A            5 PTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGD   84 (259)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECS
T ss_pred             CCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECC
Confidence            3344444444444444432 3332 45555555555 34443 3666666666666666             33444433


Q ss_pred             cc-ccchhHH--------HHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEe
Q 018622          272 DY-YQTESEI--------ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITII  341 (353)
Q Consensus       272 ~~-~~~~~~~--------~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vi  341 (353)
                      +. ++..+.+        .+.++++   +.|+++++|. +|.||+++.|++++.+.++..+++.+.++.++.|..++ .|
T Consensus        85 ~~~Ig~~~~I~~~~~~~~~~~IG~~---~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v-~I  160 (259)
T 3hsq_A           85 HNIFREYSNIHKGTKEDSPTVIGNK---NYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFC-FV  160 (259)
T ss_dssp             SCEECTTCEEECCSBTTBCEEECSS---CEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEECTTC-EE
T ss_pred             CcEECCCCEECCCccCCCcEEECCC---cEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEECCCC-EE
Confidence            21 2222111        1111122   3333334443 44555555555555555555555555555556665553 45


Q ss_pred             cCCcEECCCccC
Q 018622          342 MEKATIEDGMVI  353 (353)
Q Consensus       342 g~~~~i~~g~vv  353 (353)
                      |++++|+++++|
T Consensus       161 g~~~~Vg~~s~V  172 (259)
T 3hsq_A          161 GDYSMVAGLAKV  172 (259)
T ss_dssp             CTTCEECSSEEE
T ss_pred             CCCCEECCCCEE
Confidence            888888887764

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.49  E-value=1.1e-13  Score=127.74  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=32.7

Q ss_pred             ccCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEe
Q 018622          206 FYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK  264 (353)
Q Consensus       206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~  264 (353)
                      +++|.+.+.+++.+++++.|+. +.|. ++.||++|.|+ ++.|. ++.||++|.|+++++|.
T Consensus         9 ~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~   71 (305)
T 3t57_A            9 LIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVG   71 (305)
T ss_dssp             CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEEC
T ss_pred             eECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEec
Confidence            3455666666666666655553 4443 55566666665 44443 45555555555555554

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.48  E-value=1.5e-13  Score=123.97  Aligned_cols=141  Identities=13%  Similarity=0.170  Sum_probs=75.3

Q ss_pred             CCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEec------------eEEECCc
Q 018622          209 PKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD------------TVMLGAD  272 (353)
Q Consensus       209 ~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~------------~v~~~~~  272 (353)
                      |.+.+.+++.+++++.|+. +.+. ++.||++|.|+ ++.|. ++.||++|.|+++|.|..            .+.++++
T Consensus        10 p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~   89 (262)
T 2qia_A           10 PTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDR   89 (262)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSS
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCC
Confidence            3333444444444444432 3342 46666666665 45453 577777777777777752            2333322


Q ss_pred             -cccchhHH---------HHhhcCCCcceEeCCCeEE-cceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEe
Q 018622          273 -YYQTESEI---------ASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITII  341 (353)
Q Consensus       273 -~~~~~~~~---------~~~~~~~~~~~~ig~~~~i-~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vi  341 (353)
                       .++..+.+         .+.++++   +.|+++++| .+|.||+++.|+.++.+.+...+++.+.++.++.|..++ .|
T Consensus        90 ~~Ig~~~~I~~~~~~~~~~~~IG~~---~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~v-~I  165 (262)
T 2qia_A           90 NRIRESVTIHRGTVQGGGLTKVGSD---NLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFC-II  165 (262)
T ss_dssp             CEECTTCEEECCCTTTTSEEEECSS---CEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTC-EE
T ss_pred             ceeCCCCEEcCCccCCCCcCEECCC---cEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCCC-EE
Confidence             12211111         1222222   455555555 256666666666666666555566666666666666663 45


Q ss_pred             cCCcEECCCccC
Q 018622          342 MEKATIEDGMVI  353 (353)
Q Consensus       342 g~~~~i~~g~vv  353 (353)
                      |++++|+++++|
T Consensus       166 g~~~~ig~~s~V  177 (262)
T 2qia_A          166 GAHVMVGGCSGV  177 (262)
T ss_dssp             CTTCEECSSCEE
T ss_pred             CCCCEEccCCEE
Confidence            888888888864

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.47  E-value=4.2e-13  Score=115.27  Aligned_cols=118  Identities=12%  Similarity=0.261  Sum_probs=79.8

Q ss_pred             ccCCCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEec-----eEEECCcccc
Q 018622          206 FYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKD-----TVMLGADYYQ  275 (353)
Q Consensus       206 ~~~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~~-----~v~~~~~~~~  275 (353)
                      +.++...+.+++.+.+++.|.+    ++.||++|.|+ ++.|.    +++||++|.|+++|.|..     .+.++++   
T Consensus        29 ~~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~---  101 (191)
T 3ixc_A           29 YAGVSPSVDSTAFIAGNARIIG----DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKF---  101 (191)
T ss_dssp             BTTBCCEECTTSEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTT---
T ss_pred             ccCCCCEECCCCEECCCCEEeC----CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCC---
Confidence            3445556666666666666654    45566666666 44443    459999999999999983     3334433   


Q ss_pred             chhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCcc
Q 018622          276 TESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV  352 (353)
Q Consensus       276 ~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~v  352 (353)
                                     +.|++++.|.+++||++|.||+++++.++..+++.+.++.++.|       .++..|+++++
T Consensus       102 ---------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV-------~~~~~i~~~~~  156 (191)
T 3ixc_A          102 ---------------VTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLL-------TRGKIVKSGEL  156 (191)
T ss_dssp             ---------------CEECTTCEECSCEECTTCEECTTCEECTTCEECTTCEECTTCEE-------CTTCEECTTEE
T ss_pred             ---------------CEECCCCEEECCEECCCCEECCCCEEeCCeEECCCCEECCCCEE-------CCCcCcCCCeE
Confidence                           89999999999999999999999999876544444444443333       44444454443

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.46  E-value=4.3e-13  Score=113.34  Aligned_cols=116  Identities=15%  Similarity=0.204  Sum_probs=82.6

Q ss_pred             CCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEece----EEECCccccchhH
Q 018622          209 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDT----VMLGADYYQTESE  279 (353)
Q Consensus       209 ~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~~~----v~~~~~~~~~~~~  279 (353)
                      ....+.+++.+.|++.+.+    ++.||++|.|+ ++.+.    ++.||++|.|+++|.|...    +.++++       
T Consensus         9 ~~~~i~~~~~I~~~a~i~g----~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~-------   77 (173)
T 1v3w_A            9 KKPRIHPSAFVDENAVVIG----DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY-------   77 (173)
T ss_dssp             BCCEECTTCEECTTSEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS-------
T ss_pred             CCCEECCCCEECCCCEEeC----CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCC-------
Confidence            3445666666777776654    45566666665 44443    4899999999999999853    555544       


Q ss_pred             HHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEE
Q 018622          280 IASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI  347 (353)
Q Consensus       280 ~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i  347 (353)
                                 +.|++++.|.+++||+++.||+++.+.++..+++.+.++.++++..+ ..|++++++
T Consensus        78 -----------~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~-~~i~~~~~v  133 (173)
T 1v3w_A           78 -----------VTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPN-KEIPDYSLV  133 (173)
T ss_dssp             -----------CEECTTCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTT-CEECTTEEE
T ss_pred             -----------CEECCCCEECCCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCC-cEeCCCcEE
Confidence                       89999999999999999999999999887666666666665555544 233666655

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.46  E-value=4.7e-13  Score=120.54  Aligned_cols=17  Identities=6%  Similarity=0.296  Sum_probs=9.9

Q ss_pred             eeEEcCCcEECCCCEEe
Q 018622          248 HSIVGERSRLDYGVELK  264 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i~  264 (353)
                      ++.||++|.|+++|.|.
T Consensus        79 ~v~IG~~~~Ig~~~~I~   95 (259)
T 3hsq_A           79 KTVIGDHNIFREYSNIH   95 (259)
T ss_dssp             CEEECSSCEECTTCEEE
T ss_pred             cEEECCCcEECCCCEEC
Confidence            45556666666655555

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.45  E-value=5.6e-13  Score=112.61  Aligned_cols=117  Identities=19%  Similarity=0.328  Sum_probs=81.2

Q ss_pred             CCCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEee----eEEcCCcEECCCCEEec----eEEECCccccchh
Q 018622          208 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKD----TVMLGADYYQTES  278 (353)
Q Consensus       208 ~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~~----~~ig~~~~ig~~~~i~~----~v~~~~~~~~~~~  278 (353)
                      ++...+.+++.+.+++.+.+    ++.||++|.|+ ++.|..    ++||++|.|+++|.|..    .+.++++      
T Consensus        10 ~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~------   79 (173)
T 1xhd_A           10 EKKPKIASSAFIADYVTITG----DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD------   79 (173)
T ss_dssp             TBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT------
T ss_pred             CCCCEECCCcEECCCCEEEC----CEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCC------
Confidence            34445556666666666543    56677777776 455543    89999999999999982    3444443      


Q ss_pred             HHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEE
Q 018622          279 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI  347 (353)
Q Consensus       279 ~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i  347 (353)
                                  +.|++++.|.+++||+++.||+++.+.++..+++.+.++.++.+..+ ..|++++++
T Consensus        80 ------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~-~~i~~~~vv  135 (173)
T 1xhd_A           80 ------------VTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQG-KKIPPNTLA  135 (173)
T ss_dssp             ------------CEECTTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTEEE
T ss_pred             ------------CEECCCCEEeCCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCC-cEeCCCCEE
Confidence                        89999999999999999999999999877656555555555555433 223555554

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.45  E-value=1.8e-13  Score=117.56  Aligned_cols=12  Identities=33%  Similarity=0.288  Sum_probs=6.4

Q ss_pred             ecCCcEECCCcc
Q 018622          341 IMEKATIEDGMV  352 (353)
Q Consensus       341 ig~~~~i~~g~v  352 (353)
                      ||++++|++|++
T Consensus       123 Ig~~~~Igagsv  134 (192)
T 3mqg_A          123 IGRYAFVGAGAV  134 (192)
T ss_dssp             ECTTCEECTTCE
T ss_pred             ECCCCEEcCCCE
Confidence            355555555554

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.44  E-value=4.8e-13  Score=115.17  Aligned_cols=129  Identities=9%  Similarity=0.021  Sum_probs=74.9

Q ss_pred             CceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEeceEEECCccccchhHH-HHhh
Q 018622          211 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLL  284 (353)
Q Consensus       211 ~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~-~~~~  284 (353)
                      ..|++++.|.+++.|.+    ++.||++|+|+ ++.+.    +..||++|.|+++|+|.+............... ...+
T Consensus        13 v~I~~~a~I~~~a~I~g----~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~I   88 (194)
T 3tv0_A           13 VKIAPGAVVCVESEIRG----DVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMII   88 (194)
T ss_dssp             EEECTTCEECTTSEEES----SEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEE
T ss_pred             CEECCCCEEcCCCEEeC----CCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEE
Confidence            33444444444444443    56677777776 45553    478999999999999976543322111111111 1333


Q ss_pred             cCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEE
Q 018622          285 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI  347 (353)
Q Consensus       285 ~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i  347 (353)
                      +++   +.|++++.+.++.||+++.||+++.|..+..+++.|.|+.++.|..+ +.|+++++|
T Consensus        89 g~~---~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~-~~Ip~~svv  147 (194)
T 3tv0_A           89 GTN---NVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTF-EVIPENTVI  147 (194)
T ss_dssp             CSS---CEECTTCEECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCC-EEECTTEEE
T ss_pred             CCc---ceEecceeEeeeeecccceecceeeECCeEEECCCCEECCCCEECCC-cEECCCCEE
Confidence            444   67778888888888888888888888776555555555554444443 233444444

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.44  E-value=2.7e-13  Score=123.69  Aligned_cols=136  Identities=10%  Similarity=0.040  Sum_probs=61.4

Q ss_pred             CCCceecCCCCCCCeEEeceeeeceEECCCcEEC-------ceEEe-eeEEcCCcEECCCCEEeceEEECCcc--ccchh
Q 018622          209 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-------ECTVE-HSIVGERSRLDYGVELKDTVMLGADY--YQTES  278 (353)
Q Consensus       209 ~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-------~~~v~-~~~ig~~~~ig~~~~i~~~v~~~~~~--~~~~~  278 (353)
                      +...|++++.+.+++.|+.    ++.|+++|+|+       ++.|. +++|+.+++||++|.|...+.++...  +....
T Consensus        21 ~~~~I~p~a~I~~~a~ig~----~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g   96 (283)
T 4eqy_A           21 SMSRIHPTAIIEPGAQLHE----TVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQDMKYKD   96 (283)
T ss_dssp             --CCBCTTCEECTTCEECT----TCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCCCTTCCC
T ss_pred             CCcccCCCCEECCCCEECC----CCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCccccccC
Confidence            4455666666666666654    44455555554       22222 23333334444444444333331100  00000


Q ss_pred             -HHHHhhcCCCcceEeCCCeEEcc--------eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECC
Q 018622          279 -EIASLLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIED  349 (353)
Q Consensus       279 -~~~~~~~~~~~~~~ig~~~~i~~--------~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~  349 (353)
                       .....++++   +.|++++.|..        ++||+++.|++++.+..+..+++.+.++.++.+.++ +.||+++.||+
T Consensus        97 ~~~~v~IG~~---~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~-v~Igd~~~Ig~  172 (283)
T 4eqy_A           97 EPTRLVIGDR---NTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGH-VEIGDWAIVGG  172 (283)
T ss_dssp             CCCEEEECSS---CEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECT
T ss_pred             CCceEEECCC---cccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCC-cEECCCeEEec
Confidence             002344444   56666666653        666666666666655544444455555444444444 23355555555


Q ss_pred             Ccc
Q 018622          350 GMV  352 (353)
Q Consensus       350 g~v  352 (353)
                      +++
T Consensus       173 ~a~  175 (283)
T 4eqy_A          173 MSG  175 (283)
T ss_dssp             TCE
T ss_pred             CCE
Confidence            444

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.43  E-value=1.2e-12  Score=112.10  Aligned_cols=116  Identities=18%  Similarity=0.289  Sum_probs=80.1

Q ss_pred             CCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEE----eeeEEcCCcEECCCCEEece-----------EEECCc
Q 018622          209 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV----EHSIVGERSRLDYGVELKDT-----------VMLGAD  272 (353)
Q Consensus       209 ~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v----~~~~ig~~~~ig~~~~i~~~-----------v~~~~~  272 (353)
                      ....+..++.+.+++.|.+    ++.||++|.|+ ++.|    .++.||++|.|+++|.|..+           +.++++
T Consensus        18 ~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~   93 (189)
T 3r1w_A           18 ISPKLGERVFVDRSSVIIG----DVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDD   93 (189)
T ss_dssp             BCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSS
T ss_pred             cCCEECCCcEECCCCEEee----eeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCC
Confidence            3455666777777777754    45556666665 4444    35699999999999999874           455544


Q ss_pred             cccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEE
Q 018622          273 YYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI  347 (353)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i  347 (353)
                                        +.|++++.|.+++||++|.||+++++..+..+++.+.++.+++|..+. .|++++++
T Consensus        94 ------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~-~i~~~~vv  149 (189)
T 3r1w_A           94 ------------------VTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGK-VLESGFVY  149 (189)
T ss_dssp             ------------------EEECTTCEEESCEECSSEEECTTCEECTTCEECSSCEECTTCEECTTC-EECTTEEE
T ss_pred             ------------------CEECCCCEEeCcEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCC-EeCCCCEE
Confidence                              899999999999999999999999998765555555555444444331 22444444

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.43  E-value=1e-12  Score=112.29  Aligned_cols=116  Identities=16%  Similarity=0.323  Sum_probs=78.8

Q ss_pred             CCCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEe-----------ceEEECC
Q 018622          208 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK-----------DTVMLGA  271 (353)
Q Consensus       208 ~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~-----------~~v~~~~  271 (353)
                      .....+..++.+.++++|.+    ++.||++|.|+ ++.|.    ++.||++|.|+++|.|.           ..+.+++
T Consensus        13 ~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~   88 (187)
T 3r3r_A           13 NLFPGIGQRVMIDTSSVVIG----DVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGE   88 (187)
T ss_dssp             TBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECS
T ss_pred             ccCcccCCCeEECCCCEEEC----ceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECC
Confidence            34456666777777777754    45555555555 34443    46999999999999993           4445554


Q ss_pred             ccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCc
Q 018622          272 DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM  351 (353)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~  351 (353)
                      +                  +.|++++.|.+++||+++.||+++++..+..+      +++++|+.+ ++|.++..|++++
T Consensus        89 ~------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~I------g~~~~Ig~~-s~V~~~~~i~~~~  143 (187)
T 3r3r_A           89 D------------------VTVGHKVMLHGCTIGNRVLVGMGSIVLDGAII------EDDVMIGAG-SLVPQHKRLESGY  143 (187)
T ss_dssp             S------------------CEECTTCEEESCEECSSEEECTTCEECTTCEE------CSSEEECTT-CEECTTCEECTTE
T ss_pred             C------------------CEECCCCEEeCcEECCCCEECCCCEECCCCEE------CCCCEECCC-CEECCCcCcCCCc
Confidence            3                  89999999999999999999999999766444      444555444 2334444555544


Q ss_pred             c
Q 018622          352 V  352 (353)
Q Consensus       352 v  352 (353)
                      +
T Consensus       144 v  144 (187)
T 3r3r_A          144 L  144 (187)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.42  E-value=1.3e-12  Score=114.12  Aligned_cols=116  Identities=17%  Similarity=0.234  Sum_probs=81.7

Q ss_pred             eecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe-----eeEEcCCcEECCCCEEec--------------eEEECCc
Q 018622          213 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKD--------------TVMLGAD  272 (353)
Q Consensus       213 i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~-----~~~ig~~~~ig~~~~i~~--------------~v~~~~~  272 (353)
                      +.+++.+.+.+.+.+    ++.||++|.|+ ++.|.     +++||++|.|+++|.|..              .+.++++
T Consensus        42 i~~~~~I~~~a~i~~----~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~  117 (213)
T 3kwd_A           42 IAPTAYVHSFSNLIG----DVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDN  117 (213)
T ss_dssp             ECTTCEECTTSEEEE----SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTT
T ss_pred             CCCCCEECCCCEEeC----ceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCC
Confidence            334444444444433    46666666666 45553     479999999999999985              1334433


Q ss_pred             cccchhHHHHhhcCCCcceEeCCCeEEcc-eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCc
Q 018622          273 YYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM  351 (353)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~  351 (353)
                                        +.|++++.|.+ ++||++|.||+++++.+ ..+++.+.++.+++|. + ++|++++.|++|+
T Consensus       118 ------------------v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V~-~-~~i~~~~~v~~~~  176 (213)
T 3kwd_A          118 ------------------VSITHMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLIQ-D-VEIPPGKYVPSGM  176 (213)
T ss_dssp             ------------------CEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEEE-S-CEECTTBEECTTC
T ss_pred             ------------------cEECCCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEEC-C-cEeCCCCEECCCc
Confidence                              78888888885 99999999999999876 5677777777777773 3 4568888888887


Q ss_pred             cC
Q 018622          352 VI  353 (353)
Q Consensus       352 vv  353 (353)
                      +|
T Consensus       177 vv  178 (213)
T 3kwd_A          177 VI  178 (213)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.40  E-value=8.1e-13  Score=119.15  Aligned_cols=31  Identities=16%  Similarity=0.130  Sum_probs=15.1

Q ss_pred             CCCCceecCCCCCCCeEEeceeeeceEECCCcEEC
Q 018622          208 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR  242 (353)
Q Consensus       208 ~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~  242 (353)
                      +++..|++++.+.+++.|+.    ++.|+++|+|+
T Consensus         3 ~~~~~I~p~a~I~~~a~Ig~----~v~I~~~~~I~   33 (262)
T 2qia_A            3 DKSAFVHPTAIVEEGASIGA----NAHIGPFCIVG   33 (262)
T ss_dssp             CTTCEECTTCEECTTCEECT----TCEECTTCEEC
T ss_pred             CCCCeECCCCEECCCCEECC----CCEECCCCEEC
Confidence            34455555555555555543    34444444444

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.40  E-value=1.5e-12  Score=118.08  Aligned_cols=83  Identities=20%  Similarity=0.247  Sum_probs=48.0

Q ss_pred             eEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccC
Q 018622          249 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADR  327 (353)
Q Consensus       249 ~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~  327 (353)
                      ++||++|.|+++|+|...+.++.+                  +.|++++.|. ++.||+++.|+.++.+.....+++.+.
T Consensus        71 ~~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~  132 (273)
T 3fs8_A           71 LIIGENALIRTENVIYGDTIIGDN------------------FQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVN  132 (273)
T ss_dssp             EEECTTCEECTTCEEESSCEECTT------------------CEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCE
T ss_pred             eEECCCCEECCCCEEeCCCEECCC------------------CEECCceEECCCCEECCCCEECccceeCCceEECCceE
Confidence            556666666666666444444432                  6677777775 677777777777666665555555555


Q ss_pred             CCCceEEccCeEEecCCcEECCC
Q 018622          328 PELGFYIRSGITIIMEKATIEDG  350 (353)
Q Consensus       328 ~~~~~~i~~~~~vig~~~~i~~g  350 (353)
                      ++.++.|+.+ +.|++++.++++
T Consensus       133 I~~~~~I~~~-~~ig~~~~i~~~  154 (273)
T 3fs8_A          133 IHSNVFVGEK-SIIKDFVWLFPH  154 (273)
T ss_dssp             ECTTCEECTT-CEECTTCEECTT
T ss_pred             ECCCCEECCC-ceeCCceeecCc
Confidence            6655555554 234554444433

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.39  E-value=1.2e-12  Score=121.31  Aligned_cols=104  Identities=8%  Similarity=0.134  Sum_probs=51.7

Q ss_pred             CCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhc-
Q 018622          210 KTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLA-  285 (353)
Q Consensus       210 ~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~-  285 (353)
                      +..+.+++.+.+++.|.+    ++.|+++|+|+ ++.|.+|+|+++++|+++++|+++++.++..++....+  .+.+. 
T Consensus        65 ~a~I~~~a~I~~~~~I~g----~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~  140 (334)
T 2pig_A           65 NAMAFAGTEITGNARITQ----PCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILA  140 (334)
T ss_dssp             TCEEETTCEECTTCEEES----SCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC
T ss_pred             CeEEcCCcEECCCcEEee----eeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEee
Confidence            344444444444444433    45666666666 45566677777777777777777765554333222211  01110 


Q ss_pred             ------CCCcceEeCCCeEEcceEeCCCCEECCCeEEc
Q 018622          286 ------EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV  317 (353)
Q Consensus       286 ------~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~  317 (353)
                            +..+++.|++++.|.+++|+++|.|+.+++++
T Consensus       141 ~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~  178 (334)
T 2pig_A          141 IQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATIT  178 (334)
T ss_dssp             --------CCCEEECTTCEEESCEEETTCEECTTCEEE
T ss_pred             cceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEe
Confidence                  11112455555555555555555555555443

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.38  E-value=9.6e-13  Score=118.90  Aligned_cols=57  Identities=16%  Similarity=0.195  Sum_probs=35.3

Q ss_pred             cCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEE
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL  263 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i  263 (353)
                      ++|.+.+.+++.+++++.|+. +.|. ++.||++|.|+ ++.|. ++.||++|.|+++|.|
T Consensus        10 I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I   70 (265)
T 4e6u_A           10 IHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASV   70 (265)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEE
T ss_pred             ECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEE
Confidence            345555555555555555543 4442 56667777666 45554 5777888888877777

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.37  E-value=1.1e-12  Score=118.65  Aligned_cols=57  Identities=14%  Similarity=0.219  Sum_probs=35.5

Q ss_pred             CCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEe
Q 018622          208 DPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK  264 (353)
Q Consensus       208 ~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~  264 (353)
                      +|.+.+.+++.+++++.|+. +.|. ++.||++|.|+ ++.|. ++.||++|.|++++.|+
T Consensus         8 ~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~   68 (266)
T 3r0s_A            8 HPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVG   68 (266)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEE
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceec
Confidence            44444555555555555543 4442 56677777776 45554 68888888888888885

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.36  E-value=1.4e-13  Score=126.70  Aligned_cols=36  Identities=28%  Similarity=0.395  Sum_probs=19.0

Q ss_pred             eEeCCCCEECCCeEEccCCCcccccCCCCceEEccC
Q 018622          302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG  337 (353)
Q Consensus       302 ~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~  337 (353)
                      ++||++|.||++++|..+..+++.+.|+.+++|..+
T Consensus       219 v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~  254 (316)
T 3tk8_A          219 VIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQS  254 (316)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             cEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence            555555555555555555444444445555555443

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.36  E-value=5.5e-13  Score=129.65  Aligned_cols=59  Identities=15%  Similarity=0.229  Sum_probs=46.4

Q ss_pred             eecCCCCCCCeEEec-eee-eceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECC
Q 018622          213 FYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA  271 (353)
Q Consensus       213 i~~~~~i~~~~~i~~-~~i-~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~  271 (353)
                      +.+.+.+++++.|+. +.| .++.||++|.|+ ++.|.++.||++|.|+++|.|+++.+.++
T Consensus       265 ~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~  326 (459)
T 4fce_A          265 LRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDAN  326 (459)
T ss_dssp             EEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTT
T ss_pred             EeCcEEECCCcEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCC
Confidence            345566777777875 777 468899999998 78888899999999999999887666666

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.35  E-value=3.6e-12  Score=110.58  Aligned_cols=84  Identities=15%  Similarity=0.160  Sum_probs=49.2

Q ss_pred             eEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEece---EEECCccccchhHHHHhhcCCCcceEeCCCeEE--------
Q 018622          233 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKI--------  299 (353)
Q Consensus       233 ~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i--------  299 (353)
                      +.||++|.|+ ++.|. ++.||++|.|+++|.|...   +.++++                  |.|++++.|        
T Consensus        53 v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~------------------~~Ig~~~~I~~~~~~~~  114 (205)
T 3vbi_A           53 ISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDF------------------ANISSRTIVYAAIDDFS  114 (205)
T ss_dssp             EEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTT------------------CEECTTCEEESEECCCS
T ss_pred             eEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCC------------------CEECCCcEEEeCCCCcc
Confidence            4555555555 34443 6777777777777777433   555544                  677777777        


Q ss_pred             ------------------cceEeCCCCEECCCeEEccCCCcccccCCCCceEE
Q 018622          300 ------------------RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI  334 (353)
Q Consensus       300 ------------------~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i  334 (353)
                                        .+++||++|.||++++|..+..+++.+.++.+++|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV  167 (205)
T 3vbi_A          115 GNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMV  167 (205)
T ss_dssp             SSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred             cccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence                              34666777777777666655444444333333333

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.35  E-value=5.6e-12  Score=117.96  Aligned_cols=49  Identities=14%  Similarity=0.093  Sum_probs=23.1

Q ss_pred             eCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          304 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       304 ig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      ||+++.|+.++.+.++..+++.+.++.++.|..+ +.||++++|+++++|
T Consensus       243 IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~-v~Ig~~~vv~a~s~V  291 (341)
T 3eh0_A          243 IGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH-MEICDKVTVTGMGMV  291 (341)
T ss_dssp             ECTTCEECTTCEECTTEEECTTCEECTTCEECSS-EEECSSEEECTTCEE
T ss_pred             ECCCCEECCCCEECCCcEECCCcEEcCCCEECCC-CEECCCCEEeeCCEE
Confidence            3333333333333333334444444444444444 235777777776653

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.35  E-value=6e-12  Score=108.01  Aligned_cols=98  Identities=17%  Similarity=0.333  Sum_probs=79.5

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEece---EEECCccccchhHHHHhhcCCCcceEeCCCeEEc------ce
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR------NC  302 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~------~~  302 (353)
                      ++.|+++|.|.    .++.||++|.|+++|.|.++   +.++++                  +.|++++.|.      ++
T Consensus        39 ~~~I~~~~~i~----~~v~IG~~~~I~~~~~I~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~g~~   96 (191)
T 3ixc_A           39 TAFIAGNARII----GDVCIGKNASIWYGTVLRGDVDKIEVGEG------------------TNIQDNTVVHTDSMHGDT   96 (191)
T ss_dssp             TSEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEECC----CCE
T ss_pred             CCEECCCCEEe----CCcEECCCCEECCCCEEecCCCCeEECCC------------------CEECCCCEEeecCCcCCe
Confidence            45566666655    46899999999999999854   366655                  8999999998      89


Q ss_pred             EeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          303 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       303 iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +||+++.||+++.+.+ ..+++.+.|+.++.|.++ +.||++++|++|++|
T Consensus        97 ~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~-~~Ig~~~~Ig~gsvV  145 (191)
T 3ixc_A           97 VIGKFVTIGHSCILHA-CTLGNNAFVGMGSIVMDR-AVMEEGSMLAAGSLL  145 (191)
T ss_dssp             EECTTCEECTTCEECS-CEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred             EECCCCEECCCCEEEC-CEECCCCEECCCCEEeCC-eEECCCCEECCCCEE
Confidence            9999999999998875 567888888888888877 456999999988875

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.34  E-value=9e-12  Score=107.18  Aligned_cols=20  Identities=10%  Similarity=0.189  Sum_probs=13.6

Q ss_pred             eEeEcCCHHHHHHHHHhhcc
Q 018622          180 YWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       180 ~w~dIgtp~~y~~a~~~ll~  199 (353)
                      ...-+|++...++....++.
T Consensus        50 ~~iaig~~~~r~~~~~~l~~   69 (194)
T 3bfp_A           50 FFIAIGNNEIRKKIYQKISE   69 (194)
T ss_dssp             EEECCCCHHHHHHHHHHHHT
T ss_pred             EEEEeCCHHHHHHHHHHHHH
Confidence            45678888777766666654

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.34  E-value=8.8e-12  Score=117.82  Aligned_cols=62  Identities=15%  Similarity=0.269  Sum_probs=30.8

Q ss_pred             EeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeE-----EecCCcEECCCccC
Q 018622          292 GVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMVI  353 (353)
Q Consensus       292 ~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----vig~~~~i~~g~vv  353 (353)
                      .||.++.|. ++.|++++.||+++.+.+...+...++||++++|+.++.     .||++++|+++++|
T Consensus       246 ~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~V  313 (372)
T 3pmo_A          246 LIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMV  313 (372)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCEE
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCEE
Confidence            344444443 344444444555554444444444455555555544433     25667777666653

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=99.33  E-value=4.6e-12  Score=114.19  Aligned_cols=167  Identities=9%  Similarity=0.141  Sum_probs=112.0

Q ss_pred             CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCC----CCCcceEE
Q 018622           15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGES----RASDYGLV   88 (353)
Q Consensus        15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~----~~~~~g~v   88 (353)
                      ++++.||++ +..+...++   ....+.|+++.||.  +...+++++++.|.+.++++++++.++.++    .+..+. |
T Consensus        86 ~~~~~Gt~~-i~~~~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vk-V  160 (264)
T 3k8d_A           86 ADHQSGTER-LAEVVEKCA---FSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVK-V  160 (264)
T ss_dssp             TTCCSHHHH-HHHHHHHHT---CCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCE-E
T ss_pred             CCCCCCHHH-HHHHHHHhc---cCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceE-E
Confidence            356789987 777877774   11347899999998  456789999999998889999999987651    122223 5


Q ss_pred             EECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhh-h---hhh
Q 018622           89 KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGS-E---IIP  164 (353)
Q Consensus        89 ~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~-d---~l~  164 (353)
                      .+|++|+++.|.+||.............     .   ....++.+.|+|+|++++|+.+... .+.  .++. +   .++
T Consensus       161 v~d~~g~~l~fsr~~ip~~r~~~~~~~~-----~---~~~~~~~~~GiY~y~~~~l~~~~~~-~~~--~lE~~e~leqlr  229 (264)
T 3k8d_A          161 VLDAEGYALYFSRATIPWDRDRFAEGLE-----T---VGDNFLRHLGIYGYRAGFIRRYVNW-QPS--PLEHIEMLEQLR  229 (264)
T ss_dssp             EECTTSBEEEEESSCCSCCHHHHHHCSS-----C---CCSCCEEECSEEEEEHHHHHHHHHS-CCC--HHHHHHTCTTHH
T ss_pred             EECCCCeEEEEecCCCCCCCcccccccc-----c---cCCcceEEEEEEEECHHHHHHHHhC-CCC--hhhhHHHHHHHH
Confidence            5789999999999985311100000000     0   0024689999999999999876542 222  1211 2   233


Q ss_pred             hhhhcCcEEEEEe-cceEeEcCCHHHHHHHHHhh
Q 018622          165 AAIMEHDVQAYIF-RDYWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       165 ~l~~~~~i~~~~~-~g~w~dIgtp~~y~~a~~~l  197 (353)
                      .+-...+|.++.. +.+|.+|+||+||.+|+..+
T Consensus       230 ~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l  263 (264)
T 3k8d_A          230 VLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM  263 (264)
T ss_dssp             HHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred             HHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence            3333468999866 45689999999999998643

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.33  E-value=6.1e-12  Score=113.88  Aligned_cols=50  Identities=18%  Similarity=0.334  Sum_probs=26.7

Q ss_pred             eecCCCCCCCeEEeceeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEEC
Q 018622          213 FYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG  270 (353)
Q Consensus       213 i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~  270 (353)
                      |++.+.+.+++.|+.    ++.|+++|+|+    .++.||++|+|+++|+|.+.+.++
T Consensus         4 I~p~a~I~~~a~Ig~----~~~Ig~~~~I~----~~v~IG~~~~I~~~~~I~g~~~IG   53 (270)
T 1j2z_A            4 IAKTAIISPKAEINK----GVEIGEFCVIG----DGVKLDEGVKLHNNVTLQGHTFVG   53 (270)
T ss_dssp             BCTTCEECTTSEECT----TCEECTTCEEC----TTCEECTTCEECTTCEECSEEEEC
T ss_pred             cCCCCEECCCCEECC----CCEECCCCEEC----CCCEECCCCEEcCCcEEeCCeEEc
Confidence            445555555544443    55666666665    245566666666666665444443

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.32  E-value=4.3e-12  Score=123.74  Aligned_cols=84  Identities=20%  Similarity=0.309  Sum_probs=60.2

Q ss_pred             eecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCc
Q 018622          213 FYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV  289 (353)
Q Consensus       213 i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~  289 (353)
                      +.+++.+++++.|.+ +.|. ++.||++|+|+ ++.|.++.||++|.|+ ++.|.++.+..+                  
T Consensus       271 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~------------------  331 (468)
T 1hm9_A          271 IDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADG------------------  331 (468)
T ss_dssp             ECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTT------------------
T ss_pred             ECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCC------------------
Confidence            445566666777754 5554 78999999998 7888899999999999 999998777766                  


Q ss_pred             ceEeCCCeEEc-ceEeCCCCEECCCeEE
Q 018622          290 PIGVGRNTKIR-NCIIDKNVKIGKDVVI  316 (353)
Q Consensus       290 ~~~ig~~~~i~-~~iig~~~~Ig~~~~i  316 (353)
                       +.|++++.|. +++||+++.||+++.+
T Consensus       332 -~~Ig~~~~i~~~~~ig~~~~Ig~~~~i  358 (468)
T 1hm9_A          332 -VTVGPYAHIRPNSSLGAQVHIGNFVEV  358 (468)
T ss_dssp             -CEECSSCEECSSCEECTTCEEEEEEEE
T ss_pred             -cEECCceEEecCcEECCccEECCCcEE
Confidence             5555555555 5555555555544433

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=99.32  E-value=7.2e-12  Score=112.39  Aligned_cols=168  Identities=10%  Similarity=0.091  Sum_probs=108.6

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHHHC-CCcEEEEEEEeCCC----CCCcceEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDR-DADITISCAAVGES----RASDYGLV   88 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~~~-~a~~tll~~~~~~~----~~~~~g~v   88 (353)
                      +++.||++ ++.+..+++.   ...+.|+++.||..  ...+++++++.|+++ +++++.++.+..++    .+..++ |
T Consensus        78 ~~~~Gt~~-i~~a~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vk-v  152 (256)
T 3tqd_A           78 DHQSGTER-IAEAAVALGF---EDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTK-V  152 (256)
T ss_dssp             TCCSHHHH-HHHHHHHTTC---CTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCE-E
T ss_pred             CCCCcHHH-HHHHHHHhCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccE-E
Confidence            56789987 7778777731   12478999999993  356799999999875 56777777776431    133344 4


Q ss_pred             EECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhh--hhhhhh
Q 018622           89 KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGS--EIIPAA  166 (353)
Q Consensus        89 ~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~--d~l~~l  166 (353)
                      .+|++|+++.|.+||............+       .....+++.+.|+|+|++++|+.+.. ..+...+..+  +.++.+
T Consensus       153 v~d~~g~~l~fsr~pip~~r~~~~~~~~-------~~~~~~~~~~~GiY~y~~~~l~~~~~-l~~s~lE~~e~leqlr~l  224 (256)
T 3tqd_A          153 VLNRRNYALYFSHAPIPWGRDTFSDKEN-------LQLNGSHYRHVGIYAYRVGFLEEYLS-WDACPAEKMEALEQLRIL  224 (256)
T ss_dssp             EECTTSBEEEEESSCSSCCTTTTTCGGG-------CCCSSCCEEEEEEEEEEHHHHHHHHH-SCCCHHHHHHTCTTHHHH
T ss_pred             EECCCCEEeEEecCCCCCCCcccccccc-------cccCCcceEEEEEEEcCHHHHHHHHh-CCCCcccchhhhHHHHHH
Confidence            6788999999999986321100000000       00012468999999999999987643 2222111100  223333


Q ss_pred             hhcCcEEEEEecce-EeEcCCHHHHHHHHHh
Q 018622          167 IMEHDVQAYIFRDY-WEDIGTIKSFYEANMA  196 (353)
Q Consensus       167 ~~~~~i~~~~~~g~-w~dIgtp~~y~~a~~~  196 (353)
                      -...+|.++..+++ |.+|+||+||.++++.
T Consensus       225 e~G~~i~~~~~~~~~~~~idtpeDl~~a~~~  255 (256)
T 3tqd_A          225 WHGGRIHMVVAKSKCPPGVDTEEDLERVRAY  255 (256)
T ss_dssp             HTTCCCEEEECSSCCCCCCSSHHHHHHHHTT
T ss_pred             HCCCeEEEEEeCCCCCCCcCCHHHHHHHHHh
Confidence            34469999999875 8999999999998753

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.31  E-value=2.5e-12  Score=118.00  Aligned_cols=29  Identities=10%  Similarity=-0.003  Sum_probs=15.6

Q ss_pred             hhhcCcEEEEEe--cceEeEcCCHHHHHHHH
Q 018622          166 AIMEHDVQAYIF--RDYWEDIGTIKSFYEAN  194 (353)
Q Consensus       166 l~~~~~i~~~~~--~g~w~dIgtp~~y~~a~  194 (353)
                      +++++++.+...  +|.|..---++......
T Consensus        61 ~l~~g~~r~a~~~~~g~w~~~~w~kk~ill~   91 (304)
T 3eg4_A           61 LLDRGEVRVAEKQADGNWHVNQWLKKAVLLS   91 (304)
T ss_dssp             HHHTTSSCSEEECTTSCEEECHHHHHHHHHH
T ss_pred             HhcCCCeEEEEEcCCCceEEeeeeeeeeeee
Confidence            445566665554  36676655554444433

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.31  E-value=4.3e-12  Score=115.06  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=17.2

Q ss_pred             eEeCCCCEECCCeEEccCCCcccccCCCCceEEccC
Q 018622          302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG  337 (353)
Q Consensus       302 ~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~  337 (353)
                      ++||++|.||++++|..+..+++.+.|+.+++|..+
T Consensus       178 v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~~  213 (276)
T 3gos_A          178 TIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQS  213 (276)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence            445555555555555444444444444444444443

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.31  E-value=1.2e-11  Score=116.25  Aligned_cols=51  Identities=18%  Similarity=0.227  Sum_probs=24.3

Q ss_pred             eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeE-----EecCCcEECCCcc
Q 018622          302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMV  352 (353)
Q Consensus       302 ~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----vig~~~~i~~g~v  352 (353)
                      +.|++++.||+++.+.....+...++||+++.|+.++.     .||++++|+++++
T Consensus       240 v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~  295 (357)
T 4e79_A          240 VQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSM  295 (357)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCE
T ss_pred             cccCCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCE
Confidence            33444444444444444444444444555555544432     2466666665554

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.31  E-value=1.5e-11  Score=103.86  Aligned_cols=98  Identities=20%  Similarity=0.360  Sum_probs=77.9

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEece---EEECCccccchhHHHHhhcCCCcceEeCCCeEEc-----ceE
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-----NCI  303 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-----~~i  303 (353)
                      ++.|+++|+|.    .++.||++|.|+++|.|.+.   +.++.+                  +.|++++.|.     +++
T Consensus        18 ~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~v~IG~~------------------~~I~~~~~I~~~~~~~~~   75 (173)
T 1xhd_A           18 SAFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDR------------------VNVQDQCTLHQSPQYPLI   75 (173)
T ss_dssp             TCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECCTTCCEE
T ss_pred             CcEECCCCEEE----CCEEECCCcEEcCCcEEecCCCeEEECCC------------------CEECCCCEEEeCCCCCeE
Confidence            45555555554    47899999999999999875   666654                  8999999998     799


Q ss_pred             eCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          304 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       304 ig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      ||+++.|++++.+.+ ..+++.++++.++.|..+ +.||++++|++|++|
T Consensus        76 Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~Ig~~s~V  123 (173)
T 1xhd_A           76 LEDDVTVGHQVILHS-CHIKKDALIGMGSIILDG-AEIGEGAFIGAGSLV  123 (173)
T ss_dssp             ECTTCEECTTCEEES-CEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred             ECCCCEECCCCEEeC-CEECCCCEEcCCCEEcCC-CEECCCCEECCCCEE
Confidence            999999999998865 457778888888888777 455888888888764

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=99.31  E-value=4.2e-12  Score=113.96  Aligned_cols=142  Identities=10%  Similarity=0.105  Sum_probs=98.8

Q ss_pred             ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622           18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA   97 (353)
Q Consensus        18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~   97 (353)
                      .+||+++|+.++++++        +++|++||+++..++   ++.+.++++.+|+   ...++ ...|+++ +|++|+|+
T Consensus       104 ~~g~~~al~~a~~~~~--------~~lv~~~D~~~~~~~---~~~~~~~~~~~t~---~~~~~-~~~~~v~-~d~~g~v~  167 (254)
T 1jyk_A          104 DYNNFYSLYLVKEELA--------NSYVIDADNYLFKNM---FRNDLTRSTYFSV---YREDC-TNEWFLV-YGDDYKVQ  167 (254)
T ss_dssp             TSCTHHHHHTTGGGCT--------TEEEEETTEEESSCC---CCSCCCSEEEEEC---EESSC-SSCCEEE-ECTTCBEE
T ss_pred             CCCcHHHHHHHHHHCC--------CEEEEeCCcccCHHH---HHHHHhCCceEEE---EcccC-CCCeEEE-ECCCCeEE
Confidence            5699999999987763        489999999986653   2222233333332   22321 2368865 78889999


Q ss_pred             EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHH---HHHHhhCC-C--CCchhhhhhhhhhhcCc
Q 018622           98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF---KLLRWRYP-T--SNDFGSEIIPAAIMEHD  171 (353)
Q Consensus        98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~---~~l~~~~~-~--~~~~~~d~l~~l~~~~~  171 (353)
                      .|.|||.                        ..++++|+|+|+++.+.   .++++... .  ...+.+++++.+.+..+
T Consensus       168 ~~~e~~~------------------------~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~~~~d~~~~l~~~~~  223 (254)
T 1jyk_A          168 DIIVDSK------------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELD  223 (254)
T ss_dssp             EEECCCS------------------------SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCC
T ss_pred             EEEECCC------------------------CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhCC
Confidence            9999753                        25789999999987443   23333211 1  22345677777777789


Q ss_pred             EEEEEec-ceEeEcCCHHHHHHHHHhhcc
Q 018622          172 VQAYIFR-DYWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       172 i~~~~~~-g~w~dIgtp~~y~~a~~~ll~  199 (353)
                      +.++.++ ++|.+|+||++|.++++.+..
T Consensus       224 v~~~~~~~~~~~~Idt~edl~~a~~~l~~  252 (254)
T 1jyk_A          224 VYVEELEGNSIYEIDSVQDYRKLEEILKN  252 (254)
T ss_dssp             EEEEECCTTSEEECCSHHHHHHHHHHHC-
T ss_pred             eEEEEecCCeEEEcCCHHHHHHHHHHhhh
Confidence            9999987 799999999999999987653

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.30  E-value=1.5e-11  Score=105.48  Aligned_cols=110  Identities=21%  Similarity=0.319  Sum_probs=63.8

Q ss_pred             cCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEee-eEEcCCcEECCCCEEeceEEECCccccchhHHHH
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEH-SIVGERSRLDYGVELKDTVMLGADYYQTESEIAS  282 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~-~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~  282 (353)
                      ++|.+.+.+++.+++++.|.. +.+. ++.||++|.|+ ++.|.+ +.||++|.|+.++.|.+.+.++++          
T Consensus         6 I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~----------   75 (192)
T 3mqg_A            6 IHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDD----------   75 (192)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTT----------
T ss_pred             ECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCC----------
Confidence            345555555555555555543 4443 46666666666 444433 666666666666666655555544          


Q ss_pred             hhcCCCcceEeCCCeEE----------------cceEeCCCCEECCCeEEccCCCcccccCCCCceEE
Q 018622          283 LLAEGKVPIGVGRNTKI----------------RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI  334 (353)
Q Consensus       283 ~~~~~~~~~~ig~~~~i----------------~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i  334 (353)
                              +.|++++.+                ..++||+++.||++++|..+..+++.+.++.++++
T Consensus        76 --------~~ig~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV  135 (192)
T 3mqg_A           76 --------VFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVV  135 (192)
T ss_dssp             --------CEECTTCBCCSCSSCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             --------CEECCceEEecccCCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEE
Confidence                    555555544                34677777777777777766544444444444444

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.28  E-value=1.6e-11  Score=113.10  Aligned_cols=118  Identities=16%  Similarity=0.205  Sum_probs=64.4

Q ss_pred             ceEECCCcEEC-ceEEe-----eeEEcCCcEECCCCEEece-------------EEECCcc-ccchhHHH--HhhcCCCc
Q 018622          232 DAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDT-------------VMLGADY-YQTESEIA--SLLAEGKV  289 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~-----~~~ig~~~~ig~~~~i~~~-------------v~~~~~~-~~~~~~~~--~~~~~~~~  289 (353)
                      ++.||++|.|+ ++.|.     ++.||+++.|+++|.|+..             +.++++. +...+-+.  +.....  
T Consensus        55 ~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~--  132 (305)
T 3t57_A           55 NTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDK--  132 (305)
T ss_dssp             SEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTCC--
T ss_pred             CcEECCCcEEccCcEeccCCCCceEECCceEECCccEeCccccccceecCCCceEEECCCcccCceEEEeecccccCc--
Confidence            46666666666 45554     5788888888888888432             4444431 11111110  000111  


Q ss_pred             ceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          290 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       290 ~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                       +.||+++.|. ++.|++++.||+++.+.++..+...++|++++.|+.+ +.|-.+++||++++|
T Consensus       133 -~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v~Igd~~~Ig~~-~~V~~~v~IG~~a~i  195 (305)
T 3t57_A          133 -TVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGA-SVVHQFCHIGSFAFI  195 (305)
T ss_dssp             -EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTT-CEECTTCEECTTCEE
T ss_pred             -cEEccCccccceEEEeCceEeCCceEECCCcccCCCCEECCceEEcCC-CEEcCCeEECCCCEE
Confidence             3444444443 4555555556666666655555556666666666666 344667777777654

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.28  E-value=1.5e-11  Score=107.33  Aligned_cols=98  Identities=11%  Similarity=0.095  Sum_probs=80.2

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEece----EEECCccccchhHHHHhhcCCCcceEeCCCeEEcc------
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN------  301 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~------  301 (353)
                      ++.|+++|.|+    .++.||++|.|+++|.|.+.    +.++.+                  +.|++++.|..      
T Consensus        45 ~~~I~~~a~i~----~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~------------------~~Ig~~~~I~~~~~~~~  102 (213)
T 3kwd_A           45 TAYVHSFSNLI----GDVRIKDYVHIAPGTSIRADEGTPFHIGSR------------------TNIQDGVVIHGLQQGRV  102 (213)
T ss_dssp             TCEECTTSEEE----ESEEECTTCEECTTCEEEESSSCCEEECTT------------------CEECTTCEEEECSSCCE
T ss_pred             CCEECCCCEEe----CceEECCCCEEcCCcEEecCCCCceEECCC------------------CEECCCCEEEecCCCce
Confidence            45666666665    46899999999999999763    666654                  89999999974      


Q ss_pred             ---------eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          302 ---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       302 ---------~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                               ++||+++.|+.++.+.+...+++.+.|+.++.|.+  ++||++++|++|++|
T Consensus       103 ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~--~~Ig~~~~Igags~V  161 (213)
T 3kwd_A          103 IGDDGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN--ARVGAGCVVMMHVLI  161 (213)
T ss_dssp             ECTTSCEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE--EEECTTCEECSSCEE
T ss_pred             eccCCcccceEECCCcEECCCcEEcCCCEECCCCEECCCCEEeC--cEECCCCEEcCCCEE
Confidence                     88999999999999988777888888888888865  677999999998875

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.27  E-value=2.5e-11  Score=103.64  Aligned_cols=98  Identities=16%  Similarity=0.270  Sum_probs=80.6

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceE---EECCccccchhHHHHhhcCCCcceEeCCCeEE---------
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTV---MLGADYYQTESEIASLLAEGKVPIGVGRNTKI---------  299 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i---------  299 (353)
                      ++.|+++|.|.    .++.||++|.|++++.|....   .++++                  +.|++++.|         
T Consensus        21 ~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~~   78 (187)
T 3r3r_A           21 RVMIDTSSVVI----GDVRLADDVGIWPLVVIRGDVNYVAIGAR------------------TNIQDGSVLHVTHKSSSN   78 (187)
T ss_dssp             TCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBCCBTTB
T ss_pred             CeEECCCCEEE----CceEECCCCEECCCcEEEcCCccEEECCC------------------CEECCCCEEecCCccccC
Confidence            45566666554    478999999999999999754   77765                  899999999         


Q ss_pred             ---cceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          300 ---RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       300 ---~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                         .+++||+++.||+++.+.+ ..+++.++|+.++.|..+ +.||++++|++|++|
T Consensus        79 ~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~-~~Ig~~~~Ig~~s~V  133 (187)
T 3r3r_A           79 PHGNPLIIGEDVTVGHKVMLHG-CTIGNRVLVGMGSIVLDG-AIIEDDVMIGAGSLV  133 (187)
T ss_dssp             C-CBCEEECSSCEECTTCEEES-CEECSSEEECTTCEECTT-CEECSSEEECTTCEE
T ss_pred             CCCCCeEECCCCEECCCCEEeC-cEECCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence               6899999999999999975 568888888888888777 456999999998875

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.27  E-value=2.8e-11  Score=104.02  Aligned_cols=97  Identities=13%  Similarity=0.154  Sum_probs=63.1

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEe---ceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc---------
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELK---DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR---------  300 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~---------  300 (353)
                      ++|+++|.|+    .++.||++|.|+++|+|.   +.+.++++                  |.|++++.|.         
T Consensus        19 a~I~~~a~I~----g~V~IG~~~~I~~~~~I~~~~g~i~IG~~------------------~~I~~~~~I~~~~~~~~~~   76 (194)
T 3tv0_A           19 AVVCVESEIR----GDVTIGPRTVIHPKARIIAEAGPIVIGEG------------------NLIEEQALIINAYPDNITP   76 (194)
T ss_dssp             CEECTTSEEE----SSEEECTTCEECTTCEEEESSSCEEECTT------------------CEECTTCEEEECCCSCC--
T ss_pred             CEEcCCCEEe----CCCEECCCCEECCCCEEccCCCCeEECCC------------------ccccCCccccccccccccc
Confidence            4444455544    357778888888888775   33555554                  6677777663         


Q ss_pred             --------ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          301 --------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       301 --------~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                              .++||+++.|+.++.+.+ ..+++.+.|+.++.|+.+ +.||++|+|++|++|
T Consensus        77 ~~~~~~~~~~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~g-v~IG~~~~IgagsvV  135 (194)
T 3tv0_A           77 DTEDPEPKPMIIGTNNVFEVGCYSQA-MKMGDNNVIESKAYVGRN-VILTSGCIIGACCNL  135 (194)
T ss_dssp             -------CCEEECSSCEECTTCEECC-SEECSSCEECTTCEECTT-EEECSSCEECTTCEE
T ss_pred             ccccCcCCceEECCcceEecceeEee-eeecccceecceeeECCe-EEECCCCEECCCCEE
Confidence                    357777777777777653 346666777777777666 445777777777654

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=99.26  E-value=3.9e-11  Score=105.88  Aligned_cols=156  Identities=14%  Similarity=0.195  Sum_probs=102.4

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe-EEe-cCHHHHHHHHHHCCCcEEEEEEEeCC-CCCCcceEEEECC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVGE-SRASDYGLVKIDN   92 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~-i~~-~dl~~~~~~h~~~~a~~tll~~~~~~-~~~~~~g~v~~d~   92 (353)
                      +...||++++ .+...++      .+.|++++||. +.+ .+++++++.|.+.++.++++...... ..+..+++ ..|+
T Consensus        69 ~~~~g~~~~~-~~~~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  140 (234)
T 2y6p_A           69 DLPSGSDRVL-YVVRDLD------VDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVKV-VLDR  140 (234)
T ss_dssp             TCCSHHHHHH-HHHTTCC------CSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCEE-EECT
T ss_pred             ccccchHHHH-HHHHhCC------CCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceEE-EEcC
Confidence            3456888876 3443332      47899999999 776 78999999998877545555442111 11334443 4577


Q ss_pred             CCCeeEEEeCCCcc-ccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhh---hhhhhh
Q 018622           93 MGRIAQFAEKPSGA-NLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI---IPAAIM  168 (353)
Q Consensus        93 ~g~V~~~~ekp~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~---l~~l~~  168 (353)
                      +|++..|.|||... ...  .              ....+.++|+|+|+++.|..+.+.. +...+. .+.   ++.+.+
T Consensus       141 ~g~v~~~~e~~~~~~~~~--~--------------~~~~~~~~giy~~~~~~l~~~~~~~-~~~~~~-~d~~~~~~~~~~  202 (234)
T 2y6p_A          141 EGYALYFSRSPIPYFRKN--D--------------TFYPLKHVGIYGFRKETLMEFGAMP-PSKLEQ-IEGLEQLRLLEN  202 (234)
T ss_dssp             TSBEEEEESSCCSCCSSC--C--------------SSCCEEEEEEEEEEHHHHHHHHHSC-CCHHHH-HHTCTHHHHHHT
T ss_pred             CCCEeeeecCCCCccccc--c--------------cceeeEEEEEEEcCHHHHHHHHhCC-CCccch-hhHHHHHHHHHC
Confidence            89999999987531 100  0              0124679999999999997665321 111111 111   222334


Q ss_pred             cCcEEEEEecceEeEcCCHHHHHHHHHhh
Q 018622          169 EHDVQAYIFRDYWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       169 ~~~i~~~~~~g~w~dIgtp~~y~~a~~~l  197 (353)
                      ..++.++..+++|.||+||++|..|++.+
T Consensus       203 g~~v~~~~~~~~~~dI~t~~dl~~a~~~~  231 (234)
T 2y6p_A          203 GIKIKVLITENYYHGVDTEEDLKIVEEKL  231 (234)
T ss_dssp             TCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred             CCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence            57999999999999999999999998654

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.26  E-value=3.7e-11  Score=111.40  Aligned_cols=110  Identities=14%  Similarity=0.141  Sum_probs=64.0

Q ss_pred             cCCCCceecCCCCCCCeEEec-eeeeceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEE-CC----------cc
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVML-GA----------DY  273 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i~~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~-~~----------~~  273 (353)
                      +.++..+.+.+.|++++.|++ +.|.++.|+++|.|+ ++.|.+++|+++|.|+.++++.+.+.+ .+          ..
T Consensus        74 I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~  153 (334)
T 2pig_A           74 ITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQ  153 (334)
T ss_dssp             ECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEE
T ss_pred             ECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeE
Confidence            345556666666666666654 677777777777777 677777777777776666655544332 21          11


Q ss_pred             ccchhHH-HHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622          274 YQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       274 ~~~~~~~-~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~  319 (353)
                      ++..+.+ .+.++.+   |.|+.++.|.+++|++++.|++++.+.++
T Consensus       154 I~~~a~I~~s~I~~g---~~I~~~a~I~~svI~~~a~I~~~a~V~~~  197 (334)
T 2pig_A          154 IYDRATVNHSRIVHQ---VQLYGNATITHAFIEHRAEVFDFALIEGD  197 (334)
T ss_dssp             ECTTCEEESCEEETT---CEECTTCEEESEEECTTCEECTTCEEECC
T ss_pred             ECCCCEEeccEEcCC---CEEcCCeEEeCcEEcCCCEECCCcEECCc
Confidence            1111111 1334444   56666666666666666666666666543

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.26  E-value=3.6e-11  Score=105.46  Aligned_cols=85  Identities=14%  Similarity=0.142  Sum_probs=37.9

Q ss_pred             EeEcCCHHHHHHHHHhhccCCCcc-cccCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEEe-eeEEcCCc
Q 018622          181 WEDIGTIKSFYEANMALTKESPAF-HFYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERS  255 (353)
Q Consensus       181 w~dIgtp~~y~~a~~~ll~~~~~~-~~~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~-~~~ig~~~  255 (353)
                      +.-+++++...+....+......+ .++++.+.+.+.+.+++++.|.. +.+. ++.||++|.|+ ++.|. ++.||++|
T Consensus        75 ~iAIg~~~~R~~i~~~l~~~g~~~~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~  154 (220)
T 4ea9_A           75 FVAIGDNRLRQKLGRKARDHGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAAC  154 (220)
T ss_dssp             EECCCCHHHHHHHHHHHHHTTCEECCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             EEecCCHHHHHHHHHHHHhcCCCcCCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence            456777776666666665543221 23444444444444444444432 3332 34444444444 23332 23444444


Q ss_pred             EECCCCEEec
Q 018622          256 RLDYGVELKD  265 (353)
Q Consensus       256 ~ig~~~~i~~  265 (353)
                      .|++++.|.+
T Consensus       155 ~i~~~~~i~~  164 (220)
T 4ea9_A          155 HLGPASALAG  164 (220)
T ss_dssp             EECTTCEECS
T ss_pred             EECCCCEEcC
Confidence            4444444433

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.24  E-value=3.4e-11  Score=107.85  Aligned_cols=29  Identities=21%  Similarity=0.410  Sum_probs=15.8

Q ss_pred             eEeCCCeEEc----ceEeCCCCEECCCeEEccC
Q 018622          291 IGVGRNTKIR----NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       291 ~~ig~~~~i~----~~iig~~~~Ig~~~~i~~~  319 (353)
                      +.|++++.|.    ++.||++|.||+++.+.++
T Consensus       112 ~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~  144 (252)
T 3jqy_B          112 TTIGAGFEVVTDKCNVTIGHDCMIARDVILRAS  144 (252)
T ss_dssp             CEECTTCEEECSSSEEEECTTCEECSSEEEECS
T ss_pred             CEECCCcEEEeCCCCeEECCCCEEcCCcEEecC
Confidence            4555555554    4555555555555555543

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.24  E-value=4.3e-11  Score=113.37  Aligned_cols=51  Identities=18%  Similarity=0.259  Sum_probs=34.0

Q ss_pred             eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          302 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       302 ~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +.|+++|+||+++.+.+...+...++||++++|+.++ .|..+++||++++|
T Consensus       263 v~I~~~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~~-~i~~~v~Ig~~~~I  313 (374)
T 2iu8_A          263 VQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQA-GITGHICIADHVIM  313 (374)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECSSCEECTTC-EECSSCEECTTEEE
T ss_pred             cccCCccEECCCCEEccCcccCCCcEECCCeEEecCc-EECCCcccCCCcEE
Confidence            4555666666666666666666667777777776663 44777777777764

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.23  E-value=3.7e-11  Score=102.71  Aligned_cols=98  Identities=13%  Similarity=0.239  Sum_probs=77.3

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEece---EEECCccccchhHHHHhhcCCCcceEeCCCeEEcce------
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC------  302 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~------  302 (353)
                      ++.|++++.|.    .++.||++|.|+++|.|...   +.++++                  |.|++++.|..+      
T Consensus        25 ~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~~~~   82 (189)
T 3r1w_A           25 RVFVDRSSVII----GDVELGDDCSVWPLAVIRGDMHHIRIGAR------------------TSVQDGSVLHITHASDYN   82 (189)
T ss_dssp             TCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBCCSSSS
T ss_pred             CcEECCCCEEe----eeeEECCCCEECCCCEEecCCCceEECCC------------------CEECCCCEEecCCcccCC
Confidence            45566666665    47899999999999999844   477765                  899999999754      


Q ss_pred             ------EeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          303 ------IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       303 ------iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                            +||+++.||+++.+.+ ..+++.+.|+.++.|..+ +.||++++|++|++|
T Consensus        83 ~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V  137 (189)
T 3r1w_A           83 PGGYPLIIGDDVTIGHQAMLHG-CTIGNRVLIGMKSMIMDG-AIVEDEVIVAAGATV  137 (189)
T ss_dssp             TTCBCEEECSSEEECTTCEEES-CEECSSEEECTTCEECTT-CEECSSCEECTTCEE
T ss_pred             CCCCCeEECCCCEECCCCEEeC-cEECCCcEECCCCEEcCC-CEECCCCEEccCCEE
Confidence                  9999999999999876 667788888888888776 455888888888764

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.22  E-value=2.7e-11  Score=105.08  Aligned_cols=87  Identities=14%  Similarity=0.087  Sum_probs=53.3

Q ss_pred             eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc----ceEeCCCCEECCCeEEc------
Q 018622          248 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR----NCIIDKNVKIGKDVVIV------  317 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~----~~iig~~~~Ig~~~~i~------  317 (353)
                      ++.||++|.|+++|.|...+.++++                  |.|++++.|.    +++||++|.|+++++|.      
T Consensus        52 ~v~IG~~~~I~~~~~I~~~v~IG~~------------------~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~  113 (205)
T 3vbi_A           52 VISIGNNVRIDDFCILSGKVTIGSY------------------SHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDF  113 (205)
T ss_dssp             GEEECSSEEECTTCEEEEEEEECSS------------------EEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCC
T ss_pred             eeEECCCCEECCCCEEccceEECCC------------------CEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCc
Confidence            4667777777777777666666654                  6677777763    36777777777776662      


Q ss_pred             -------------------cCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          318 -------------------NKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       318 -------------------~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                                         +...+++.+.|+.++.|..+ +.||++++|++|++|
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g-v~Ig~~~~Ig~gsvV  167 (205)
T 3vbi_A          114 SGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPN-VVIGEGVAVGAMSMV  167 (205)
T ss_dssp             SSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSS-CEECTTCEECTTCEE
T ss_pred             ccccccCcccccccceeccCCEEECCCCEECCCCEEcCC-CEECCCCEEcCCCEE
Confidence                               33344555555555555555 234666666666653

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.21  E-value=1.3e-10  Score=97.99  Aligned_cols=95  Identities=13%  Similarity=0.159  Sum_probs=74.6

Q ss_pred             ccCCCCceecCCCCCCCeEEec-eeeec----eEECCCcEEC-ceEEe-----eeEEcCCcEECCCCEEeceEEECCccc
Q 018622          206 FYDPKTPFYTSPRFLPPTKIDN-CRIKD----AIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDTVMLGADYY  274 (353)
Q Consensus       206 ~~~~~~~i~~~~~i~~~~~i~~-~~i~~----~~ig~~~~i~-~~~v~-----~~~ig~~~~ig~~~~i~~~v~~~~~~~  274 (353)
                      ++++.+.+.+.+.+++++.|.. +.+.+    +.||++|.|+ ++.|.     +++||++|.|++++.|.++++.++   
T Consensus        18 ~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~---   94 (173)
T 1v3w_A           18 FVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNY---   94 (173)
T ss_dssp             EECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSS---
T ss_pred             EECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCC---
Confidence            3455566666666777777764 66653    8899999998 67775     589999999999999988776665   


Q ss_pred             cchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          275 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                                      +.||.++.|. ++.||+++.||+++++..+
T Consensus        95 ----------------~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~  124 (173)
T 1v3w_A           95 ----------------VIIGISSVILDGAKIGDHVIIGAGAVVPPN  124 (173)
T ss_dssp             ----------------EEECTTCEECTTCEECSSEEECTTCEECTT
T ss_pred             ----------------CEECCCCEEeCCCEECCCCEECCCCEECCC
Confidence                            8999999876 7899999999999988764

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.19  E-value=6.8e-11  Score=112.90  Aligned_cols=104  Identities=19%  Similarity=0.183  Sum_probs=72.9

Q ss_pred             CCCceecCCCCCCCeEEe-ceeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhc
Q 018622          209 PKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLA  285 (353)
Q Consensus       209 ~~~~i~~~~~i~~~~~i~-~~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~  285 (353)
                      +.+.+.+.+.|++++.|+ ++.|. ++.||++|.|+ ++.|.+++|++++.|+.++.|+++++.++              
T Consensus       255 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~--------------  320 (401)
T 2ggo_A          255 SGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAED--------------  320 (401)
T ss_dssp             TTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTT--------------
T ss_pred             CCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCC--------------
Confidence            334444444455555554 35554 68889999998 68888999999999999999988777766              


Q ss_pred             CCCcceEeCCCeEEc-------------------------ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccC
Q 018622          286 EGKVPIGVGRNTKIR-------------------------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG  337 (353)
Q Consensus       286 ~~~~~~~ig~~~~i~-------------------------~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~  337 (353)
                           +.||+++.|.                         +++||++|.||+++++..+      ++|+++++|+.+
T Consensus       321 -----~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~g------v~Ig~~~vi~~g  386 (401)
T 2ggo_A          321 -----VNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPG------VKIGAYARIYPG  386 (401)
T ss_dssp             -----CEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTT------CEECTTCEECTT
T ss_pred             -----cEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCC------cEECCCcEECCC
Confidence                 7788888875                         5677777777777777655      344444555444

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.16  E-value=5.7e-11  Score=115.29  Aligned_cols=82  Identities=17%  Similarity=0.262  Sum_probs=46.7

Q ss_pred             ceEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHH-HHhhcCCCcceEeCCCeEEc-ceEeCCC
Q 018622          232 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKN  307 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~ig~~~~i~-~~iig~~  307 (353)
                      ++.||++|.|+ ++.| .+++||++|.|+++|.|+++.+..+..++..+.+ .+.++++   +.|++++.|. +++||++
T Consensus       265 ~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~---~~I~~~~~i~~~~~ig~~  341 (456)
T 2v0h_A          265 TLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEK---AAIGPFSRLRPGAELAAE  341 (456)
T ss_dssp             EEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTT---CEECSSEEECTTCEECTT
T ss_pred             ceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCC---cEECCccEECCCCEECCC
Confidence            35555555555 3444 4799999999999999997777666333333222 1233333   4444444444 4444444


Q ss_pred             CEECCCeEE
Q 018622          308 VKIGKDVVI  316 (353)
Q Consensus       308 ~~Ig~~~~i  316 (353)
                      +.||+++.+
T Consensus       342 ~~ig~~~~i  350 (456)
T 2v0h_A          342 THVGNFVEI  350 (456)
T ss_dssp             CEEEEEEEE
T ss_pred             CEECCCCEE
Confidence            444444443

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.14  E-value=2.7e-10  Score=104.43  Aligned_cols=110  Identities=15%  Similarity=0.284  Sum_probs=54.7

Q ss_pred             CCCCceecCCCCCCCeEEeceee-eceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcC
Q 018622          208 DPKTPFYTSPRFLPPTKIDNCRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAE  286 (353)
Q Consensus       208 ~~~~~i~~~~~i~~~~~i~~~~i-~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~  286 (353)
                      .|...+..++.|++++.|.+..+ .++.||++|.|..    +++|+++|.||++|.|...+.+.+. ..+.....+.+++
T Consensus       133 ~p~a~I~~~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~----~~~Ig~~~~IG~~v~I~~~~~i~~~-~~~~~~~~v~IGd  207 (304)
T 3eg4_A          133 VPNCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDT----WATVGSCAQIGKNVHLSGGVGIGGV-LEPMQAGPTIIED  207 (304)
T ss_dssp             CTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECT----TEEECTTCEECTTCEECTTCEECCC-CSSTTCCCCEECT
T ss_pred             cCCEEECCCcEECCCCEEeCCEECCCCEECCCcEEcC----CcEECCCCccCCCcEECCCCEECCc-cccCccCCeEEcC
Confidence            34455555555555555544322 2455555555551    2445555555555555444433321 0000011122223


Q ss_pred             CCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccc
Q 018622          287 GKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEA  325 (353)
Q Consensus       287 ~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~  325 (353)
                      +   +.||+++.|. ++.||+++.||+++++..+..+++.
T Consensus       208 ~---v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~  244 (304)
T 3eg4_A          208 N---CFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDR  244 (304)
T ss_dssp             T---CEECTTCEECTTCEECTTCEECTTCEECTTCCEEET
T ss_pred             C---CEECCCCEEcCCcEECCCcEECCCCEEcCCeEECcc
Confidence            3   6777777654 6777777777777777665544443

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=99.14  E-value=4.4e-10  Score=100.56  Aligned_cols=167  Identities=12%  Similarity=0.103  Sum_probs=107.7

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHC-CCc-EEEEEEEeCC----CCCCcceE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR-DAD-ITISCAAVGE----SRASDYGL   87 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~-~a~-~tll~~~~~~----~~~~~~g~   87 (353)
                      ..+.||. +++.+...++.   ...+.|+++.||.  +....+.++++.|.++ ++. +|+++ +..+    ..+..+. 
T Consensus        71 ~~~~Gt~-~i~~a~~~~~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~-~~~~~~~~~~p~~~k-  144 (253)
T 4fcu_A           71 DHPSGTD-RLSEVARIKGW---DADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCE-PIHALDEFQRDSIVK-  144 (253)
T ss_dssp             TCCCHHH-HHHHHHHHHTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEE-ECCCHHHHHCTTSCE-
T ss_pred             CCCChHH-HHHHHHHhcCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeE-EcCCHHHccCCCccE-
Confidence            4566884 78888887751   1347899999999  3456799999999876 334 45544 3211    1144444 


Q ss_pred             EEECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchh-hhhhhhh
Q 018622           88 VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG-SEIIPAA  166 (353)
Q Consensus        88 v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~-~d~l~~l  166 (353)
                      |.+|++|+++.|.++|-.........+.+    .    ....++.++|+|+|++++|..+.. ..+.  .++ .+.+..+
T Consensus       145 vv~d~~g~~l~fsr~~ip~~r~~~~~~~~----~----~~~~~~~~~GiY~f~~~~l~~~~~-~~~~--~le~~e~le~l  213 (253)
T 4fcu_A          145 VVMSKQNEALYFSRATIPYDRDGAKRDEP----T----LHTQAFRHLGLYAYRVSLLQEYVT-WEMG--KLEKLESLEQL  213 (253)
T ss_dssp             EEECTTSBEEEEESSCCSCCTTTSSSSSC----C----CCSCCEEEEEEEEEEHHHHHHHTT-SCCC--HHHHHHTCTTH
T ss_pred             EEECCCCeEEEecCCCCCCCCCccccccc----c----cccceeEEEEEEEeCHHHHHHHHh-CCCC--cccchhHHHHH
Confidence            56788999999999875321100000000    0    002357899999999999987652 2122  221 2333322


Q ss_pred             --h-hcCcEEEEEecce-EeEcCCHHHHHHHHHhhcc
Q 018622          167 --I-MEHDVQAYIFRDY-WEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       167 --~-~~~~i~~~~~~g~-w~dIgtp~~y~~a~~~ll~  199 (353)
                        + ...+|.++..+++ |.+|+||++|.+|+..+..
T Consensus       214 r~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~  250 (253)
T 4fcu_A          214 RVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVE  250 (253)
T ss_dssp             HHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGG
T ss_pred             HHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHh
Confidence              3 3469999999999 9999999999999876654

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=99.14  E-value=3e-10  Score=102.17  Aligned_cols=169  Identities=12%  Similarity=0.175  Sum_probs=109.6

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCC---CCCcceEEEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGES---RASDYGLVKI   90 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~---~~~~~g~v~~   90 (353)
                      .+..||+ .+..+...+..   ...+.|++++||.  +...++.++++.|.+.++++++++.+..+.   ....|..+..
T Consensus        71 ~~~~g~~-~~~~~~~~l~~---~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (262)
T 1vic_A           71 NHNSGTE-RLAEVVEKLAI---PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLT  146 (262)
T ss_dssp             SSCCHHH-HHHHHHHHTTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEE
T ss_pred             cccCChH-HHHHHHHHhcc---CCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEE
Confidence            3456787 46566666641   1347899999998  456789999999988888888888876541   0124555556


Q ss_pred             CCCCCeeEEEeCCCc-cccccc------cccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhh
Q 018622           91 DNMGRIAQFAEKPSG-ANLKAM------QVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEII  163 (353)
Q Consensus        91 d~~g~V~~~~ekp~~-~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l  163 (353)
                      |++|+++.|.+++.. +..+..      ...      .|     ...+.++|+|+|++++|..+.... +...+. .+++
T Consensus       147 ~~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~------~p-----~~~~~~~giy~~~~~~l~~~~~~~-~~~~~~-~e~~  213 (262)
T 1vic_A          147 DKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQ------LS-----DAYLRHIGIYAYRAGFIKQYVQWA-PTQLEN-LEKL  213 (262)
T ss_dssp             CTTSBEEEEESSCSSCCHHHHTTCSCGGGCC------CC-----TTCEEEEEEEEEEHHHHHHHHHSC-CCHHHH-HHTC
T ss_pred             CCCCCEeeeecCCCCcCCccccccccccccc------cc-----cceEEEEEEEEeeHHHHHHHHhCC-CCchhh-hhhH
Confidence            778999999887531 110000      000      01     125789999999999987654321 111110 0112


Q ss_pred             h--hhh-hcCcEEEEEec-ceEeEcCCHHHHHHHHHhhccCC
Q 018622          164 P--AAI-MEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKES  201 (353)
Q Consensus       164 ~--~l~-~~~~i~~~~~~-g~w~dIgtp~~y~~a~~~ll~~~  201 (353)
                      +  .++ ...++.++..+ ++|+||+||++|..|+..+....
T Consensus       214 ~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~~  255 (262)
T 1vic_A          214 EQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAANG  255 (262)
T ss_dssp             TTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence            2  234 34689999998 79999999999999998776543

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.13  E-value=3.1e-10  Score=101.23  Aligned_cols=94  Identities=10%  Similarity=0.158  Sum_probs=72.2

Q ss_pred             cCCCCceecCCCCCCCeEEec-eeeec-----eEECCCcEEC-ceEEe------------------------eeEEcCCc
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRIKD-----AIISHGCFLR-ECTVE------------------------HSIVGERS  255 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i~~-----~~ig~~~~i~-~~~v~------------------------~~~ig~~~  255 (353)
                      +++.+.+..++.++++++|+. +.+.+     +.||++|.|+ ++.|.                        +++||++|
T Consensus        68 I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v  147 (247)
T 1qre_A           68 IDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNV  147 (247)
T ss_dssp             ECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTC
T ss_pred             ECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCC
Confidence            345555555666666666653 55532     3778888887 56554                        38999999


Q ss_pred             EECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622          256 RLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       256 ~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~  319 (353)
                      .||++|.|.+.+.++++                  +.||.++.|.++.||+++.||+++++ .+
T Consensus       148 ~Ig~~~~I~~~~~Ig~~------------------v~IG~~a~I~~v~Ig~~~~IgagsvV-~~  192 (247)
T 1qre_A          148 SLAHQSQVHGPAAVGDD------------------TFIGMQAFVFKSKVGNNCVLEPRSAA-IG  192 (247)
T ss_dssp             EECTTCEEEEEEEECTT------------------CEECTTCEEEEEEECTTCEECTTCEE-ES
T ss_pred             EECCCCEEcCCcEECCC------------------CEECCCCEEeceEECCCCEECCCCEE-CC
Confidence            99999999997777765                  89999999988999999999999999 54

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.12  E-value=3.5e-10  Score=100.49  Aligned_cols=101  Identities=16%  Similarity=0.306  Sum_probs=46.7

Q ss_pred             CCCCceecCCCCCCCeEEe-ceee-eceEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhHHHHh
Q 018622          208 DPKTPFYTSPRFLPPTKID-NCRI-KDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASL  283 (353)
Q Consensus       208 ~~~~~i~~~~~i~~~~~i~-~~~i-~~~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~  283 (353)
                      ++.+.+.+.+.|++++.|+ ++.| .++.||++|+|+ ++.|. +++||++|+|++++.|.+..       .......+.
T Consensus        95 ~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~-------~~~~~~~~~  167 (240)
T 3r8y_A           95 EPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVI-------EPPSAKPVI  167 (240)
T ss_dssp             CTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCC-------SCTTSCCCE
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCc-------cCCCCCCcE
Confidence            3444444444444444443 2444 345555555555 34442 45555555555555554420       000000011


Q ss_pred             hcCCCcceEeCCCeEE-cceEeCCCCEECCCeEEcc
Q 018622          284 LAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       284 ~~~~~~~~~ig~~~~i-~~~iig~~~~Ig~~~~i~~  318 (353)
                      ++++   +.||.++.| .++.||+++.|++++++..
T Consensus       168 Ig~~---~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~  200 (240)
T 3r8y_A          168 VEDD---VVIGANVVVLEGVTVGKGAVVAAGAVVTE  200 (240)
T ss_dssp             ECTT---CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ECCC---CEECCCCEECCCcEECCCCEECCCCEECC
Confidence            1111   566666666 4666666666666666654

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.11  E-value=8.2e-11  Score=107.03  Aligned_cols=45  Identities=20%  Similarity=0.316  Sum_probs=28.4

Q ss_pred             eEeCCCeEEcc---------eEeCCCCEECCCeEEccCCCcccccCCCCceEEccC
Q 018622          291 IGVGRNTKIRN---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG  337 (353)
Q Consensus       291 ~~ig~~~~i~~---------~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~  337 (353)
                      +.|++++.|.+         ++||++|.||++++|  +..+++.+.|+.+++|..+
T Consensus       237 v~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkd  290 (347)
T 3r5d_A          237 SDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI--GIPLGDRNIVEAGLYITAG  290 (347)
T ss_dssp             EEECTTCEECC------CCCCEECTTCEECTTCEE--CSCBCTTCEECTTCEECTT
T ss_pred             CEECCCCEEccccCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCC
Confidence            67777777764         788888888888888  4444444444444444333

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=99.09  E-value=2.3e-10  Score=101.63  Aligned_cols=158  Identities=16%  Similarity=0.199  Sum_probs=104.6

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHC-CCcEEEEEEEeCCC---CCCcceEEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR-DADITISCAAVGES---RASDYGLVK   89 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~-~a~~tll~~~~~~~---~~~~~g~v~   89 (353)
                      ++..||++++..+. .++      .+.|++++||.  +...++.++++.|.+. ++++++++.+..+.   .+.... +.
T Consensus        72 ~~~~g~~~~~~~~~-~~~------~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  143 (245)
T 1h7e_A           72 DHESGTDRLVEVMH-KVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVK-VV  143 (245)
T ss_dssp             CCSSHHHHHHHHHH-HSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCE-EE
T ss_pred             ccCCcHHHHHHHHH-hCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcE-EE
Confidence            45678887765444 333      37899999998  3456799999999888 78888877776211   111122 23


Q ss_pred             ECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhh--
Q 018622           90 IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI--  167 (353)
Q Consensus        90 ~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~--  167 (353)
                      .+++|++..|.+++........               ....+.++|+|+|+++.|..++ +...... ..+|.++.+.  
T Consensus       144 ~~~~g~~~~~~~~~~~~~r~~~---------------~~~~~~~~g~y~~~~~~l~~~~-~~~~~~~-~~td~~~~~~~~  206 (245)
T 1h7e_A          144 VNTRQDALYFSRSPIPYPRNAE---------------KARYLKHVGIYAYRRDVLQNYS-QLPESMP-EQAESLEQLRLM  206 (245)
T ss_dssp             ECTTCBEEEEESSCSSCCTTGG---------------GCCEEEEEEEEEEEHHHHHHGG-GSCCCHH-HHHHTCTTHHHH
T ss_pred             ECCCCcEEEeecCCCCCCcccc---------------cCceeEEEEEEEcCHHHHHHHH-hCCCCcc-ccchhhHHHHHH
Confidence            3678899999887542110000               0124679999999999886554 2211111 1345555432  


Q ss_pred             h-cCcEEEEEecceEeEcCCHHHHHHHHHhhc
Q 018622          168 M-EHDVQAYIFRDYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       168 ~-~~~i~~~~~~g~w~dIgtp~~y~~a~~~ll  198 (353)
                      + ..++.++..+++|+||+||++|..|+..+.
T Consensus       207 ~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~  238 (245)
T 1h7e_A          207 NAGINIRTFEVAATGPGVDTPACLEKVRALMA  238 (245)
T ss_dssp             HTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred             HCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence            3 468999999999999999999999987654

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.09  E-value=4e-10  Score=102.09  Aligned_cols=85  Identities=16%  Similarity=0.304  Sum_probs=42.6

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEE
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI  310 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~I  310 (353)
                      ++.||++|.|+    .+++|++++.||++|.|+..+.+.+. ..+.....+.++++   |.||.++.|. ++.||+++.|
T Consensus       133 ~~~IG~~~~I~----~~~~Ig~~~~IG~~v~I~~~~~i~g~-~~~~~~~~v~IGd~---v~IG~~a~I~~gv~IG~~avI  204 (276)
T 3gos_A          133 GAFVDEGTMVD----TWATVGSCAQIGKNVHLSGGVGIGGV-LEPLQANPTIIEDN---CFVGARSEVVEGVIVEEGSVI  204 (276)
T ss_dssp             TCEECTTCEEC----TTEEECTTCEECTTCEECTTCEECCC-CSSTTSCCCEECTT---CEECTTCEECTTCEECTTCEE
T ss_pred             CeEECCCCEEC----CCCEECCCCEECCCCEECCCCEECCc-cccCCCCCeEECCC---CEECCCCEECCCCEECCCCEE
Confidence            45555555555    13444444444444444444443220 00000001223333   6777777765 6777777777


Q ss_pred             CCCeEEccCCCccc
Q 018622          311 GKDVVIVNKDDVQE  324 (353)
Q Consensus       311 g~~~~i~~~~~~~~  324 (353)
                      |+++++..+..+++
T Consensus       205 gagsvV~~~~~I~~  218 (276)
T 3gos_A          205 SMGVFIGQSTRIYD  218 (276)
T ss_dssp             CTTCEECTTCCEEE
T ss_pred             CCCCEECCCcEEcc
Confidence            77777776554443

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.07  E-value=8.1e-10  Score=98.84  Aligned_cols=74  Identities=24%  Similarity=0.408  Sum_probs=42.5

Q ss_pred             ceEECCCcEEC-ceEEe---eeEEcCCcEECCCCEEec---eEEECCccccchhHHHHhhcCCCcceEeCCCeEEcc---
Q 018622          232 DAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKD---TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN---  301 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~---~~~ig~~~~ig~~~~i~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~---  301 (353)
                      ++.||++|.|. ++.+.   ++.||++|.|+++|.|..   .+.++++                  |.||+++.|.+   
T Consensus        85 ~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~------------------~~Ig~~~~I~~~~~  146 (252)
T 3jqy_B           85 YVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHD------------------CMIARDVILRASDG  146 (252)
T ss_dssp             EEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTT------------------CEECSSEEEECSCS
T ss_pred             eEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCC------------------CEEcCCcEEecCCC
Confidence            35566666666 34442   566666666666666664   4444443                  56666666654   


Q ss_pred             -----------------eEeCCCCEECCCeEEccCCCcc
Q 018622          302 -----------------CIIDKNVKIGKDVVIVNKDDVQ  323 (353)
Q Consensus       302 -----------------~iig~~~~Ig~~~~i~~~~~~~  323 (353)
                                       ++||++|.||++++|..+..++
T Consensus       147 ~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~gv~IG  185 (252)
T 3jqy_B          147 HPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVG  185 (252)
T ss_dssp             SCEEETTTCBBCCCCCCEEECSSCEECSSEEECTTCEEC
T ss_pred             cccccccccccccccCCeEEecCcEECCCCEECCCCEEC
Confidence                             3666666666666665543333

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.06  E-value=1.4e-10  Score=104.67  Aligned_cols=58  Identities=17%  Similarity=0.312  Sum_probs=38.2

Q ss_pred             eEeCCCeEEcc---------eEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEE-ecCCcEECCC
Q 018622          291 IGVGRNTKIRN---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-IMEKATIEDG  350 (353)
Q Consensus       291 ~~ig~~~~i~~---------~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~v-ig~~~~i~~g  350 (353)
                      +.|++++.|.+         ++||++|.||++++|  +..+++.|.|+.+++|..+..+ +.++.+++++
T Consensus       214 v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I~~~~g~~v~a~  281 (332)
T 3fsy_A          214 SDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRVTMPDSNSVKAR  281 (332)
T ss_dssp             CEECTTCEECSBCC---CCBCEECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEEECTTSCEEEGG
T ss_pred             CEECCCCEEcCCCCCCCccceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEEEeCCCCEEEhH
Confidence            66666666653         888888888888888  5566666666666766555443 3345555443

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.05  E-value=5.3e-10  Score=97.93  Aligned_cols=58  Identities=14%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcc
Q 018622          248 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQ  323 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~  323 (353)
                      ++.||++|.|+.+|.|.+.+.++++                  +.|++++.|. ++.||++|.||+++++..+..++
T Consensus       129 ~~~IG~~~~I~~~~~I~~~~~Ig~~------------------~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig  187 (220)
T 4ea9_A          129 DSWIGDLAIINTGAVVDHDCRLGAA------------------CHLGPASALAGGVSVGERAFLGVGARVIPGVTIG  187 (220)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECSSCEECTTCEECTTCEECTTCEEC
T ss_pred             CCEECCCCEECCCCEECCCCEECCC------------------CEECCCCEEcCCCEECCCCEECCCCEEcCCcEEC
Confidence            3455555555555555543333332                  5666666665 36666666666666665543333

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.05  E-value=4.5e-10  Score=103.35  Aligned_cols=30  Identities=17%  Similarity=0.281  Sum_probs=15.2

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEccCC
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD  320 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~  320 (353)
                      |.||.++.|. ++.||+++.||+++++..+.
T Consensus       225 v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t  255 (316)
T 3tk8_A          225 CFIGARSEVVEGVIVEENSVISMGVYLGQST  255 (316)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             CEECCCCEEcCCCEECCCCEEcCCCEEcCCe
Confidence            4555555543 45555555555555555443

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.05  E-value=8.9e-10  Score=94.60  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=29.7

Q ss_pred             eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcc-eEeCCCCEECCCeEEccC
Q 018622          248 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~-~iig~~~~Ig~~~~i~~~  319 (353)
                      ++.||++|.|+.++.|++.+.++++                  +.|++++.|.+ +.||+++.||+++++..+
T Consensus       107 ~~~IG~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~  161 (194)
T 3bfp_A          107 KAKIEKGVILNTSSVIEHECVIGEF------------------SHVSVGAKCAGNVKIGKNCFLGINSCVLPN  161 (194)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTT------------------CEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             CCEECCCCEECCCCEEcCCCEECCC------------------CEECCCCEECCCcEECCCCEEcCCCEECCC
Confidence            3555555555555555533333332                  56666666653 666666666666665544

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.04  E-value=1.4e-09  Score=105.77  Aligned_cols=92  Identities=12%  Similarity=0.114  Sum_probs=60.7

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEEC
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG  311 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig  311 (353)
                      ++.|+++|++.    .++.||++|.|+++|.|.++++..+                   +.|++++.|.+|+||++|.||
T Consensus       279 ~a~I~p~a~i~----g~v~IG~~~~I~~~a~I~~v~IG~~-------------------~~I~~~~~I~~~vIG~~~~Ig  335 (496)
T 3c8v_A          279 GASVSGYAVIK----GDTVIGENVLVSQRAYLDNAWMGKG-------------------SNAQENCYIINSRLERNCVTA  335 (496)
T ss_dssp             TCEECTTSEEE----SSCEECTTCEECTTCEEEEEEECTT-------------------CEECTTCEEEEEEEEESCEEC
T ss_pred             CcEECCCcEEe----CCeEECCCCEECCCcEEeceEecCC-------------------CEECCCceEeceEeCCCCEEC
Confidence            35556666554    3689999999999999955554444                   899999999999888888888


Q ss_pred             CCe-----EEccCCCcccccCCCCceEEccC---eEEecCCcEECCCcc
Q 018622          312 KDV-----VIVNKDDVQEADRPELGFYIRSG---ITIIMEKATIEDGMV  352 (353)
Q Consensus       312 ~~~-----~i~~~~~~~~~~~~~~~~~i~~~---~~vig~~~~i~~g~v  352 (353)
                      +++     +|+++      +.||.++.|..+   .++||++++||+|++
T Consensus       336 ~~a~I~gv~IGd~------v~IG~~a~I~~~~~~~v~IG~~a~IGagsv  378 (496)
T 3c8v_A          336 HGGKIINAHLGDM------IFTGFNSFLQGSESSPLKIGDGCVVMPHTI  378 (496)
T ss_dssp             TTCEEESEEEEET------CEECTTCEEECCSSSCEEECTTCEECTTCE
T ss_pred             CCcEEcCceECCC------cEECCCCEEeCCCCcceEECCCCEECCCCE
Confidence            654     34433      444444555433   123355555555554

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.04  E-value=6.9e-10  Score=96.88  Aligned_cols=70  Identities=19%  Similarity=0.258  Sum_probs=39.6

Q ss_pred             eEECCCcEEC-ceEEe----eeEEcCCcEECCCCEEe---ceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcc---
Q 018622          233 AIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK---DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN---  301 (353)
Q Consensus       233 ~~ig~~~~i~-~~~v~----~~~ig~~~~ig~~~~i~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~---  301 (353)
                      +.||++|.|+ ++.+.    ++.||++|.|++.+.+.   ..+.++++                  |.|++++.|.+   
T Consensus        59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~------------------~~Ig~~~~I~~~~~  120 (215)
T 2wlg_A           59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKD------------------CMLAHGYEIRNTDM  120 (215)
T ss_dssp             EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTT------------------CEECTTEEEESCCS
T ss_pred             EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCC------------------CEEcCCEEEECCCC
Confidence            6677777776 34443    26666666666644332   23333333                  66666666653   


Q ss_pred             -----------------eEeCCCCEECCCeEEccCC
Q 018622          302 -----------------CIIDKNVKIGKDVVIVNKD  320 (353)
Q Consensus       302 -----------------~iig~~~~Ig~~~~i~~~~  320 (353)
                                       ++||++|.||+++++..+.
T Consensus       121 h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv  156 (215)
T 2wlg_A          121 HPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGV  156 (215)
T ss_dssp             SCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTC
T ss_pred             cccccccccccccCCCCeEECCCcEECCCCEECCCC
Confidence                             3566666666666665543

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.04  E-value=1.3e-09  Score=98.46  Aligned_cols=30  Identities=7%  Similarity=0.167  Sum_probs=22.6

Q ss_pred             eEeCCCeEEcceEeCCCCEECCCeEEccCCC
Q 018622          291 IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDD  321 (353)
Q Consensus       291 ~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~  321 (353)
                      |.||.|+.| ++.||++|.||+++++..+..
T Consensus       240 v~IGanAtI-gVtIGd~~iIGAGSVVtkdt~  269 (332)
T 3fsy_A          240 CLLGANSGL-GISLGDDCVVEAGLYVTAGTR  269 (332)
T ss_dssp             CEECTTCEE-CSCBCSSCEECTTCEECTTCE
T ss_pred             CEECCCCEE-eeEECCCCEECCCCEECCCCE
Confidence            777777777 777788888888777776543

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.03  E-value=8e-10  Score=94.58  Aligned_cols=50  Identities=14%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             CCCCCCCeEEe-ceeeeceEECCCcEEC-ceEEe---eeEEcCCcEECCCCEEeceEE
Q 018622          216 SPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVM  268 (353)
Q Consensus       216 ~~~i~~~~~i~-~~~i~~~~ig~~~~i~-~~~v~---~~~ig~~~~ig~~~~i~~~v~  268 (353)
                      ++.+.+++++. +   .++.||+++.|+ ++.+.   .+.||++|.|+++|.|.++..
T Consensus        64 ~~~I~~~~~~~~g---~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~  118 (190)
T 3hjj_A           64 KAQINPDFRCDYG---YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATH  118 (190)
T ss_dssp             CCEECSSCEESSS---TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEEC
T ss_pred             CcEECCCEEEEeC---CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCc
Confidence            45555665552 1   134555555555 34443   568999999999999976643

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.01  E-value=6.4e-10  Score=95.60  Aligned_cols=37  Identities=8%  Similarity=0.145  Sum_probs=24.9

Q ss_pred             ceEECCCcEEC-ceEEe---eeEEcCCcEECCCCEEeceEE
Q 018622          232 DAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVM  268 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v~---~~~ig~~~~ig~~~~i~~~v~  268 (353)
                      ++.||++|.|+ ++.|.   ..+||++|.||++|.|..+..
T Consensus        76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~  116 (195)
T 3nz2_A           76 TIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASH  116 (195)
T ss_dssp             TEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEEC
T ss_pred             CeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCC
Confidence            35555555555 34442   358999999999999887653

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=98.99  E-value=7.4e-10  Score=103.57  Aligned_cols=27  Identities=15%  Similarity=0.208  Sum_probs=20.4

Q ss_pred             EEEEecceEeEcCC--HHHHHHHHHhhcc
Q 018622          173 QAYIFRDYWEDIGT--IKSFYEANMALTK  199 (353)
Q Consensus       173 ~~~~~~g~w~dIgt--p~~y~~a~~~ll~  199 (353)
                      +++....+|.|.|.  |+.|......+..
T Consensus       164 ~g~l~~~~Wt~~G~~~~~~f~~~~~~l~~  192 (387)
T 2rij_A          164 FGLLSNVAWSDDKPIELEYLRANEMRLKM  192 (387)
T ss_dssp             HHHSCCEEEETTEEECHHHHHHHHHHHHH
T ss_pred             hccCceeeeccCcccCHHHHHHHHHHHHh
Confidence            33334569999999  8899888888774

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=98.98  E-value=3.4e-10  Score=103.68  Aligned_cols=17  Identities=18%  Similarity=0.403  Sum_probs=7.9

Q ss_pred             EeCCCCEECCCeEEccC
Q 018622          303 IIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       303 iig~~~~Ig~~~~i~~~  319 (353)
                      +||++|.||++++|.++
T Consensus       225 ~IGd~v~IGaga~Ilgg  241 (313)
T 3q1x_A          225 TVGDYVTIGTGAKVLGN  241 (313)
T ss_dssp             EECSSCEECTTCEEESS
T ss_pred             EECCCCEECCCCEECCC
Confidence            44444444444444433

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=98.96  E-value=2.5e-09  Score=105.11  Aligned_cols=131  Identities=12%  Similarity=0.117  Sum_probs=54.8

Q ss_pred             CCCCCCeEEec-eeee-ceEECCCcEEC-ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHH--HHhhcCCCcce
Q 018622          217 PRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPI  291 (353)
Q Consensus       217 ~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~--~~~~~~~~~~~  291 (353)
                      +.+++.+.|.. +.+. ++.++.+|+++ ++.+.++.++.++.+. ++.+.++.+..+..++++..+  .+.++++   +
T Consensus       284 v~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~-~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~---v  359 (501)
T 3st8_A          284 VTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVV-RTHGSSSSIGDGAAVGPFTYLRPGTALGAD---G  359 (501)
T ss_dssp             CEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEEC-SEEEEEEEECTTCEECSSEEECTTCEECTT---C
T ss_pred             eEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEE-eecccccccccccccCCceeecCCcEEccc---c
Confidence            33444444432 3332 35555555555 3444455555444442 233333333333222222211  1233333   3


Q ss_pred             EeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEcc--C----eEEecCCcEECCCcc
Q 018622          292 GVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRS--G----ITIIMEKATIEDGMV  352 (353)
Q Consensus       292 ~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~--~----~~vig~~~~i~~g~v  352 (353)
                      .||.++.+.+++||+++.|+..+.+++ ..+++.|.||.++++..  |    .++||++++||.++.
T Consensus       360 ~IG~~v~ik~s~Ig~gskI~~~~~i~d-~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~  425 (501)
T 3st8_A          360 KLGAFVEVKNSTIGTGTKVPHLTYVGD-ADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTM  425 (501)
T ss_dssp             EEEETEEEESCEECTTCEEEESCEEES-EEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCE
T ss_pred             ccCCeEEEccceecCCcEEeccceecC-ceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCE
Confidence            444444444455555555444444432 23444455554444421  0    145566665555543

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=98.96  E-value=1.1e-09  Score=99.76  Aligned_cols=28  Identities=14%  Similarity=0.149  Sum_probs=13.7

Q ss_pred             eEeCCCeEEcceEeCCCCEECCCeEEccC
Q 018622          291 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       291 ~~ig~~~~i~~~iig~~~~Ig~~~~i~~~  319 (353)
                      |.||.++.| ++.||++|.||+++++..+
T Consensus       263 v~IGAnAtI-GVtIGd~~iIGAGSVVtkd  290 (347)
T 3r5d_A          263 CLIGANAGI-GIPLGDRNIVEAGLYITAG  290 (347)
T ss_dssp             CEECTTCEE-CSCBCTTCEECTTCEECTT
T ss_pred             CEECCCCEE-eeEECCCCEECCCCEECCC
Confidence            445555554 4445555555555444443

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=98.93  E-value=2.6e-09  Score=92.07  Aligned_cols=50  Identities=8%  Similarity=0.173  Sum_probs=29.6

Q ss_pred             CCCCCCCeEEeceeeeceEECCCcEEC-ceEEe---eeEEcCCcEECCCCEEeceE
Q 018622          216 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTV  267 (353)
Q Consensus       216 ~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~---~~~ig~~~~ig~~~~i~~~v  267 (353)
                      ++.+.+++++.-.  .++.||++|.|+ ++.|.   .+.||++|.||++|.|..+.
T Consensus        60 ~~~i~~~~~~~~g--~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~  113 (199)
T 3ftt_A           60 NVSISIPFDTDYG--WNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTAT  113 (199)
T ss_dssp             SEEECSSEEESSS--TTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEE
T ss_pred             CeEEeCCEEEEec--CCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCC
Confidence            3445555555200  145555555555 34442   46999999999999996543

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=98.93  E-value=4.6e-09  Score=91.58  Aligned_cols=33  Identities=15%  Similarity=0.241  Sum_probs=18.0

Q ss_pred             eEECCCcEECceEE-----eeeEEcCCcEECCCCEEec
Q 018622          233 AIISHGCFLRECTV-----EHSIVGERSRLDYGVELKD  265 (353)
Q Consensus       233 ~~ig~~~~i~~~~v-----~~~~ig~~~~ig~~~~i~~  265 (353)
                      +.||++|.|+.+.+     .+++||++|.|+++|.|.+
T Consensus        80 ~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~  117 (215)
T 2wlg_A           80 LQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRN  117 (215)
T ss_dssp             EEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEES
T ss_pred             EEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEEC
Confidence            55566666654333     3455566666665555554

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=98.92  E-value=1.1e-09  Score=96.61  Aligned_cols=138  Identities=13%  Similarity=0.191  Sum_probs=83.3

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCH-HHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl-~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      +.+|++++++.+..+++       ++|++++||+.++.++ +++++.    . . +++...........++.+..+ +|+
T Consensus        92 ~~~g~~~~i~~a~~~~~-------~~~lv~~~D~p~~~~~~~~l~~~----~-~-~~~~~~~~~~~~~~~~~v~~~-~g~  157 (232)
T 2xme_A           92 PEKGNGYSLLVAKNHVE-------DRFILTMGDHVYSQQFIEKAVRG----E-G-VIADREPRFVDIGEATKIRVE-DGR  157 (232)
T ss_dssp             GGGCHHHHHHTTGGGCC-------SSEEEEETTEEECHHHHHHHTTC----C-E-EEEESSCSSSCTTTSCEEEEE-TTE
T ss_pred             CCCCcHHHHHHHHHHCC-------CCEEEEcCCcccCHHHHHHHHhC----C-C-cEEEccccccCCCcceEEEEc-CCE
Confidence            34799999999987775       5799999999875443 444432    1 1 222211111113457777775 689


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY  175 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~  175 (353)
                      +..|.|++..                       .+++++|+|++++++|. .+++.... .+   .-++.++++.++..+
T Consensus       158 v~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~-~l~~~~~~-g~---~~l~~ll~~~~v~~~  209 (232)
T 2xme_A          158 VAKIGKDLRE-----------------------FDCVDTGFFVLDDSIFE-HAEKLRDR-EE---IPLSEIVKLARLPVT  209 (232)
T ss_dssp             EEEEETTCSS-----------------------CSEEEEEEEEECTTHHH-HHGGGTTS-SC---CCHHHHHHHHTCBEE
T ss_pred             EEEeecCCCC-----------------------cceEEEEEEEECHHHHH-HHHHHHhc-Ch---hHHHHHHHcCCEEEE
Confidence            9999887641                       35678999999999997 45543211 11   113344445567777


Q ss_pred             Eec-ceEeEcCCHHHHHHHHHh
Q 018622          176 IFR-DYWEDIGTIKSFYEANMA  196 (353)
Q Consensus       176 ~~~-g~w~dIgtp~~y~~a~~~  196 (353)
                      .++ ++|.||+||++|.+++..
T Consensus       210 ~~~~~~~~dI~tpeDl~~a~~~  231 (232)
T 2xme_A          210 YVDGELWMDVDTKEDVRRANRA  231 (232)
T ss_dssp             ECCSCCEEEEECC---------
T ss_pred             EECCCCEEeCCCHHHHHHHHhh
Confidence            775 689999999999887653

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=98.90  E-value=4.2e-09  Score=89.88  Aligned_cols=50  Identities=12%  Similarity=0.186  Sum_probs=31.0

Q ss_pred             cCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe---eeEEcCCcEECCCCEEece
Q 018622          215 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDT  266 (353)
Q Consensus       215 ~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~---~~~ig~~~~ig~~~~i~~~  266 (353)
                      .++.+.+++++.-.  .++.||+++.|+ ++.+.   ...||++|.||++|.|...
T Consensus        61 ~~~~I~~~~~~~~g--~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~  114 (188)
T 3srt_A           61 KQINVEQNIRCDYG--YNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTA  114 (188)
T ss_dssp             SCEEECSCEEESSS--TTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECE
T ss_pred             CCCEEcCCEEEEeC--CCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeC
Confidence            34445555555210  246666666666 45443   3589999999999999543

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=98.89  E-value=6.4e-09  Score=89.70  Aligned_cols=51  Identities=16%  Similarity=0.200  Sum_probs=32.5

Q ss_pred             cCCCCCCCeEEeceeeeceEECCCcEEC-ceEEe---eeEEcCCcEECCCCEEeceE
Q 018622          215 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTV  267 (353)
Q Consensus       215 ~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~---~~~ig~~~~ig~~~~i~~~v  267 (353)
                      .++.|.+|+++.-.  .++.||++|.|+ ++.+.   .+.||++|.||++|.|..+.
T Consensus        60 ~~~~I~~~~~~~~g--~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~  114 (203)
T 1krr_A           60 ENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTG  114 (203)
T ss_dssp             SSCEECSCEEESCS--TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEE
T ss_pred             CCcEEcCCeEEEeC--CCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCC
Confidence            34455566543200  156677777776 45554   37899999999999887653

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=98.88  E-value=1.4e-09  Score=95.19  Aligned_cols=16  Identities=19%  Similarity=0.368  Sum_probs=9.8

Q ss_pred             eeEEcCCcEECCCCEE
Q 018622          248 HSIVGERSRLDYGVEL  263 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i  263 (353)
                      ++.||++|.|++++.|
T Consensus        66 ~v~IG~~~~Ig~~v~i   81 (220)
T 4hur_A           66 KLIIGRFCSIGPGTTF   81 (220)
T ss_dssp             CEEECSSCEECTTCEE
T ss_pred             CeEECCCCEECCCCEE
Confidence            3566666666666664

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=98.88  E-value=1.6e-08  Score=87.13  Aligned_cols=28  Identities=18%  Similarity=0.266  Sum_probs=16.1

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEcc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~  318 (353)
                      +.||.++.|. ++.||+++.||+++++..
T Consensus       137 v~IG~~~~I~~gv~IG~~~vIgagsvV~~  165 (199)
T 3ftt_A          137 TWFGGHVAVLPGVTIGEGSVIGAGSVVTK  165 (199)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cEEcCCCEECCCCEECCCCEECCCCEECc
Confidence            5555555554 555666666666665544

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=98.85  E-value=3.4e-09  Score=102.75  Aligned_cols=99  Identities=14%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCC----
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN----  307 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~----  307 (353)
                      ++.|+++++|.++.|.++.||++|+|+. |.|.++++..+                   |.||+++.|.++++..+    
T Consensus       314 ~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~~~~Ig~~-------------------~~Ig~~~~I~~~~~~~~~~~~  373 (451)
T 1yp2_A          314 QPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLR-------------------SCISEGAIIEDSLLMGADYYE  373 (451)
T ss_dssp             CCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEESCEECTT-------------------CEECTTCEEESCEECCCSSCC
T ss_pred             CCccCCCeEEcceEEeCeEECCCCEEcc-eEEeccEECCC-------------------CEECCCCEEcCceEECCCCcc
Confidence            4667777777556667888888888886 88887666665                   89999999997766666    


Q ss_pred             ---------------CEECCCeEEccCCCcccccCCCCceEEccCe-----EEecCCcEECCCc
Q 018622          308 ---------------VKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGM  351 (353)
Q Consensus       308 ---------------~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~-----~vig~~~~i~~g~  351 (353)
                                     +.||+++.+.+ ..+++.+.||.+++|..+.     ..||+++.||+|+
T Consensus       374 ~~~~~~~~~~~g~~~~~Ig~~~~i~~-~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~  436 (451)
T 1yp2_A          374 TDADRKLLAAKGSVPIGIGKNCHIKR-AIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI  436 (451)
T ss_dssp             CHHHHHHHHTTTCCCSEECTTCEEES-EEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE
T ss_pred             cccccccccccCceeEEECCCCEEec-cEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCE
Confidence                           89999988864 5577778888888876431     2456666665554

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=98.83  E-value=3.7e-08  Score=84.02  Aligned_cols=16  Identities=25%  Similarity=0.210  Sum_probs=7.0

Q ss_pred             eEEcCCcEECCCCEEe
Q 018622          249 SIVGERSRLDYGVELK  264 (353)
Q Consensus       249 ~~ig~~~~ig~~~~i~  264 (353)
                      +.||+++.|+.+|.|.
T Consensus        77 ~~IG~~~~i~~~~~i~   92 (188)
T 3srt_A           77 IHVGENFFANYDCIFL   92 (188)
T ss_dssp             EEECTTEEECTTEEEE
T ss_pred             eEECCcccccCceEEe
Confidence            3444444444444443

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=98.83  E-value=5.9e-09  Score=100.14  Aligned_cols=66  Identities=18%  Similarity=0.318  Sum_probs=53.9

Q ss_pred             eEECCCcEEC------ceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCC
Q 018622          233 AIISHGCFLR------ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK  306 (353)
Q Consensus       233 ~~ig~~~~i~------~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~  306 (353)
                      +.+++.+.|+      .+.+.++.||++|+| .++.|.++++..+                   |.||+++.|.+|+|++
T Consensus       303 ~~i~~~~~i~~~~~~~~~~i~~~~ig~~~~I-~~~~i~~~~ig~~-------------------~~I~~~~~i~~~~i~~  362 (420)
T 3brk_X          303 AEITPPAKFVHDDEDRRGSAVSSVVSGDCII-SGAALNRSLLFTG-------------------VRANSYSRLENAVVLP  362 (420)
T ss_dssp             CCCCCCCEEECBCSSCBCEEESCEECSSCEE-ESCEEESCEECTT-------------------CEECTTCEEEEEEECT
T ss_pred             cccCCCcEEecccccCCcEecCCEECCCCEE-cCCEEeCcEEcCC-------------------CEECCCCEEcceEEcC
Confidence            4455555554      245568999999999 8999988777666                   8999999999999999


Q ss_pred             CCEECCCeEEcc
Q 018622          307 NVKIGKDVVIVN  318 (353)
Q Consensus       307 ~~~Ig~~~~i~~  318 (353)
                      ++.||+++.|.+
T Consensus       363 ~~~i~~~~~i~~  374 (420)
T 3brk_X          363 SVKIGRHAQLSN  374 (420)
T ss_dssp             TCEECTTCEEEE
T ss_pred             CCEECCCCEEec
Confidence            999999999975

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=98.80  E-value=7.3e-09  Score=94.66  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=14.5

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIV  317 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~  317 (353)
                      +.||+++.|. +++||+++.||+++++.
T Consensus       258 V~IGaga~Il~gv~IGd~a~IGagsvV~  285 (310)
T 3f1x_A          258 VIVYSNATILGRVTIGKGATVGGNIWVT  285 (310)
T ss_dssp             CEECTTCEEESSCEECTTCEECSSCEEC
T ss_pred             cEEcCCCEECCCcEECCCCEECCCCEEC
Confidence            4555555554 55555555555555554

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=98.79  E-value=1e-09  Score=96.93  Aligned_cols=134  Identities=13%  Similarity=0.061  Sum_probs=91.3

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      +.+||+++|+.+..+++       +.|+|++||+  +...+++++++ | ++++++++...+.+.. ...|+.+    .+
T Consensus        68 ~~~g~~~~i~~a~~~~~-------~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~~-~~~~~~~----~~  133 (232)
T 2dpw_A           68 DRGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPKEAV-EARFPRT----KR  133 (232)
T ss_dssp             CCSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEHHHH-HHHCTTC----CC
T ss_pred             CCCCHHHHHHHHHHHcC-------CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeeccch-hhhCCCc----ce
Confidence            36799999999987764       7899999999  66778999998 7 6677788877663320 1234322    23


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhh-----CC-C--------------
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR-----YP-T--------------  154 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~-----~~-~--------------  154 (353)
                      ++..+.|||                           .+++|+|+|++++|..+.+..     .. +              
T Consensus       134 ~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~  186 (232)
T 2dpw_A          134 TYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLL  186 (232)
T ss_dssp             CCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHHHH
T ss_pred             eEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHHHH
Confidence            577776653                           368999999999886443311     01 0              


Q ss_pred             ----CCchhhhhhhhhhhc--CcEEEEEe--cceEeEcCCHHHHH
Q 018622          155 ----SNDFGSEIIPAAIME--HDVQAYIF--RDYWEDIGTIKSFY  191 (353)
Q Consensus       155 ----~~~~~~d~l~~l~~~--~~i~~~~~--~g~w~dIgtp~~y~  191 (353)
                          .....++++..+.+.  .++..+..  .+.|+||+||++|.
T Consensus       187 ~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~  231 (232)
T 2dpw_A          187 KLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV  231 (232)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred             HHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence                111245666555532  67888888  46799999999984

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=98.77  E-value=1.1e-07  Score=92.28  Aligned_cols=250  Identities=14%  Similarity=0.129  Sum_probs=136.1

Q ss_pred             ccccccHHHHHH--H---HHHhhhhccCCCCeEEEEeCCeEEe-cCHHHHHHHHHHCCCcEEEEEEEeCCCCCC-cceEE
Q 018622           16 NWFQGTADAVRQ--F---TWVFEDAKNRNIENVAILCGDHLYR-MDYMDFIQSHVDRDADITISCAAVGESRAS-DYGLV   88 (353)
Q Consensus        16 ~~~lGT~~al~~--a---~~~i~~~~~~~~~~flV~~gD~i~~-~dl~~~~~~h~~~~a~~tll~~~~~~~~~~-~~g~v   88 (353)
                      ..++||||++..  +   ++.+.   ....++++|++||++.. .|+. ++.+|.++++++++.+.+.++  +. +||++
T Consensus       200 ~~P~GtGga~~~L~~sg~l~~l~---~~g~~~v~V~ngDnL~~~~d~~-~L~~~~~~~a~~t~~v~~~~~--p~~~yG~I  273 (488)
T 2i5k_A          200 WYPPGHGDLFESLHVSGELDALI---AQGREILFVSNGDNLGATVDLK-ILNHMIETGAEYIMELTDKTR--ADVKGGTL  273 (488)
T ss_dssp             EECCCGGGHHHHHHHHTHHHHHH---HTTCCEEEEECTTBSSCCCCHH-HHHHHHHSCCSEEEEEEECCG--GGSSSCEE
T ss_pred             eecCCCchhhhhhhhcCcHHHHH---hcCCCEEEEEeCCcCCCcccHH-HHHHHHhcCCcEEEEEEEecC--CCCceeEE
Confidence            469999999983  3   34442   12458999999999876 5786 669999999999999887654  44 59988


Q ss_pred             EECCCCC--eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCC-----------
Q 018622           89 KIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS-----------  155 (353)
Q Consensus        89 ~~d~~g~--V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~-----------  155 (353)
                      ..+ +|+  ++.+.|.+...... .  +     ..+     ....+|+|+|+|+.++|..++++.....           
T Consensus       274 v~~-dG~~~iVE~~e~~~e~~~~-~--~-----~~~-----~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~  339 (488)
T 2i5k_A          274 ISY-DGQVRLLEVAQVPKEHIDE-F--K-----NIR-----KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITR  339 (488)
T ss_dssp             EEE-TTEEEEECGGGSCTTSHHH-H--T-----CTT-----TCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC
T ss_pred             EEE-CCcEEEEEeccCCHHHHhh-c--c-----ccc-----ccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccC
Confidence            764 565  33333333321110 0  0     000     1357799999999999998887521100           


Q ss_pred             ----------CchhhhhhhhhhhcCcEEEEEec-ceEeEcCCHHHHHHHHHhhccCCCcccccCCCCceecCCCCCCCeE
Q 018622          156 ----------NDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTK  224 (353)
Q Consensus       156 ----------~~~~~d~l~~l~~~~~i~~~~~~-g~w~dIgtp~~y~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~~  224 (353)
                                +.+..|+++.+   .+..++..+ ..+.-+-+..+++.+..++...........+..     +.+.|-..
T Consensus       340 ~~~~~~~~qlE~~~~d~~~~~---~~~~~~~V~R~~F~PvKn~~~ll~~~~~~~~~~~g~~~~~~~~-----~e~~P~v~  411 (488)
T 2i5k_A          340 DGHEINVLQLETACGAAIRHF---DGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSR-----FGPNPLIK  411 (488)
T ss_dssp             -----CEECCBCCGGGGGGGS---SSCEEEEECGGGCCBCCSHHHHHHHTSTTEEEETTEEEECTTC-----CSSCCEEE
T ss_pred             CCCCCceEEeeehhhhHHhhc---cCceEEEecccccccccCCccHHHHHHHHHHHhcCcEeecCCc-----CCCCCeEE
Confidence                      01122333222   133344442 257778887777665554432211000001110     12223333


Q ss_pred             Eec--eeeec--eEECC-CcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEE
Q 018622          225 IDN--CRIKD--AIISH-GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI  299 (353)
Q Consensus       225 i~~--~~i~~--~~ig~-~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i  299 (353)
                      +++  ..+++  ..+.. -..++ .  ..-+|--++..|.++.+.+.+++..+             .+ .+..|.+|+.+
T Consensus       412 ~~~~~~~~~~~~~rf~~~p~i~~-~--~~l~v~Gdv~fg~~v~l~G~v~i~a~-------------~~-~~~~ip~g~~l  474 (488)
T 2i5k_A          412 LGSHFKKVSGFNARIPHIPKIVE-L--DHLTITGNVFLGKDVTLRGTVIIVCS-------------DG-HKIDIPNGSIL  474 (488)
T ss_dssp             ECGGGSSHHHHHHHCSSCCBCTT-E--EEEEEESSEEECTTCEEEEEEEEECC-------------TT-CCEEECTTCEE
T ss_pred             ECCcccchhhHHhhcCCCccccc-c--ceEEEEeeeEEcCCcEEEEEEEEEcC-------------CC-CeEEeCCCCEE
Confidence            332  11111  00111 11112 1  23344555888889999888887532             00 11577788888


Q ss_pred             cceEeCCCCEE
Q 018622          300 RNCIIDKNVKI  310 (353)
Q Consensus       300 ~~~iig~~~~I  310 (353)
                      .|.++..+..|
T Consensus       475 ~n~~~~~~~~~  485 (488)
T 2i5k_A          475 ENVVVTGNLQI  485 (488)
T ss_dssp             EEEEEEEEEEE
T ss_pred             ecceeeccccc
Confidence            77766544433

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=98.76  E-value=1.1e-08  Score=92.44  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=22.3

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                      +.||.++.|. +++||+++.||+++++..+
T Consensus       223 v~IGaga~Il~gv~IG~~a~IGagsvV~kd  252 (287)
T 3mc4_A          223 VLIGAGAKILGNIQVGQCSKIAAGSVVLKS  252 (287)
T ss_dssp             CEECTTCEEESSCEECTTCEECTTCEECSC
T ss_pred             CEECCCCEECCCcEECCCCEECCCCEEccc
Confidence            7778777776 6888888888888877653

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=98.75  E-value=2.6e-08  Score=89.85  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=13.3

Q ss_pred             eeEEcCCcEECCCCEEeceEEECC
Q 018622          248 HSIVGERSRLDYGVELKDTVMLGA  271 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i~~~v~~~~  271 (353)
                      +++||++|.||++|.|...+.+++
T Consensus       184 gvvIG~~~~IGd~v~I~~gvtIg~  207 (287)
T 3mc4_A          184 GLVVGETAVVEDNVSILHGVTLGG  207 (287)
T ss_dssp             TCEECTTCEECSSCEEETTCEEEC
T ss_pred             CeEECCCeEECCCCEEcCCCEEcC
Confidence            355566666666666555554443

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=98.75  E-value=1.3e-08  Score=92.11  Aligned_cols=29  Identities=7%  Similarity=-0.014  Sum_probs=25.8

Q ss_pred             CCeEE--EEeCCeEEecCHHHHHHHHHHCCC
Q 018622           40 IENVA--ILCGDHLYRMDYMDFIQSHVDRDA   68 (353)
Q Consensus        40 ~~~fl--V~~gD~i~~~dl~~~~~~h~~~~a   68 (353)
                      .|++|  ++++|++...+|.+++.+|..++-
T Consensus        39 ~EP~L~~~l~~~IL~~~~l~~aLa~~La~kl   69 (289)
T 1t3d_A           39 CEPMLASFYHATLLKHENLGSALSYMLANKL   69 (289)
T ss_dssp             HCGGGHHHHHHHTTTCSSHHHHHHHHHHHHH
T ss_pred             cCCHHHHHhcccccCCCCHHHHHHHHHhccC
Confidence            38999  999999999999999999987663

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=98.72  E-value=1.5e-08  Score=90.73  Aligned_cols=28  Identities=7%  Similarity=0.018  Sum_probs=25.2

Q ss_pred             CeEE--EEeCCeEEecCHHHHHHHHHHCCC
Q 018622           41 ENVA--ILCGDHLYRMDYMDFIQSHVDRDA   68 (353)
Q Consensus        41 ~~fl--V~~gD~i~~~dl~~~~~~h~~~~a   68 (353)
                      |++|  ++++|++...+|.+++.+|..++-
T Consensus        20 EP~L~~~l~~~IL~~~~l~~aLa~~la~kl   49 (267)
T 1ssq_A           20 EPMLASFFHSTILKHQNLGGALSYLLANKL   49 (267)
T ss_dssp             CHHHHHHHHHHTTTSSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHhcccccCCCCHHHHHHHHHhccC
Confidence            8999  999999999999999999987663

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=98.72  E-value=3e-08  Score=90.55  Aligned_cols=35  Identities=9%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             ceEeCCCCEECCCeEEccCCCcccccCCCCceEEc
Q 018622          301 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIR  335 (353)
Q Consensus       301 ~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~  335 (353)
                      +++||++|.||++++|.++..+++.++||.+++|.
T Consensus       251 ~~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~  285 (310)
T 3f1x_A          251 HPILEDDVIVYSNATILGRVTIGKGATVGGNIWVT  285 (310)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECSSCEEC
T ss_pred             CCEECCCcEEcCCCEECCCcEECCCCEECCCCEEC
Confidence            55777888888888777654444444444444443

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=98.71  E-value=6.1e-08  Score=84.78  Aligned_cols=20  Identities=35%  Similarity=0.459  Sum_probs=12.4

Q ss_pred             ceEeCCCCEECCCeEEccCC
Q 018622          301 NCIIDKNVKIGKDVVIVNKD  320 (353)
Q Consensus       301 ~~iig~~~~Ig~~~~i~~~~  320 (353)
                      +++||++|.||++++|.++.
T Consensus       119 ~v~IG~~v~IG~~a~I~~gv  138 (220)
T 4hur_A          119 DIEIGNDVWIGRDVTIMPGV  138 (220)
T ss_dssp             CEEECSSCEECTTCEECTTC
T ss_pred             CeEECCCcEECCCCEEeCCC
Confidence            45666666666666666553

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=98.70  E-value=1.1e-07  Score=80.81  Aligned_cols=35  Identities=11%  Similarity=0.306  Sum_probs=24.6

Q ss_pred             ceEECCCcEEC-ceEE---eeeEEcCCcEECCCCEEece
Q 018622          232 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDT  266 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v---~~~~ig~~~~ig~~~~i~~~  266 (353)
                      ++.||+++.|. ++.+   .++.||++|.|+++|.|...
T Consensus        74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~  112 (185)
T 2p2o_A           74 NIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTA  112 (185)
T ss_dssp             TEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECE
T ss_pred             CEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcC
Confidence            45556666665 4444   36799999999999999653

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=98.70  E-value=8.7e-08  Score=81.20  Aligned_cols=35  Identities=17%  Similarity=0.414  Sum_probs=23.6

Q ss_pred             ceEECCCcEEC-ceEE---eeeEEcCCcEECCCCEEece
Q 018622          232 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDT  266 (353)
Q Consensus       232 ~~~ig~~~~i~-~~~v---~~~~ig~~~~ig~~~~i~~~  266 (353)
                      ++.||++|.|+ ++.+   ..+.||++|.|+++|.|...
T Consensus        72 ~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~  110 (182)
T 1ocx_A           72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTA  110 (182)
T ss_dssp             TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECE
T ss_pred             CEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeC
Confidence            35555555555 3444   25789999999999998643

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=98.70  E-value=5.5e-08  Score=82.46  Aligned_cols=27  Identities=22%  Similarity=0.391  Sum_probs=12.0

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIV  317 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~  317 (353)
                      +.||.++.|. ++.||+++.||+++++.
T Consensus       135 v~Ig~~a~I~~gv~IG~~~vIgagsvV~  162 (182)
T 1ocx_A          135 VWIGGRAVINPGVTIGDNVVVASGAVVT  162 (182)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eEECCCCEECCCcEECCCCEECCCCEEC
Confidence            4444444443 44444444444444443

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=98.68  E-value=6.3e-08  Score=82.30  Aligned_cols=27  Identities=22%  Similarity=0.362  Sum_probs=14.4

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIV  317 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~  317 (353)
                      +.||+++.|. ++.||+++.||+++++.
T Consensus       137 v~IG~~~~I~~gv~IG~~~vIgagsvV~  164 (185)
T 2p2o_A          137 VWIGGRAVINPGVTIGDNAVIASGAVVT  164 (185)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEEC
Confidence            4555555554 55555555555555554

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=98.67  E-value=8.2e-08  Score=85.96  Aligned_cols=29  Identities=34%  Similarity=0.528  Sum_probs=22.3

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                      +.||.++.|. +++||+++.||+++++..+
T Consensus       196 v~IGaga~Il~gv~IG~~a~IGagsvV~~d  225 (267)
T 1ssq_A          196 VMIGAGAKILGNIEVGKYAKIGANSVVLNP  225 (267)
T ss_dssp             CEECTTCEEESSCEECTTCEECTTCEECSC
T ss_pred             eEEcCCCEEeCCcEECCCCEECCCCEEccC
Confidence            7788777776 6788888888888877653

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=98.60  E-value=1.7e-07  Score=84.64  Aligned_cols=29  Identities=28%  Similarity=0.484  Sum_probs=20.8

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                      +.||.++.|. ++.||+++.||+++++..+
T Consensus       216 v~IGaga~Ilggv~IG~~a~IGagsvV~~d  245 (289)
T 1t3d_A          216 VMIGAGAKILGNIEVGRGAKIGAGSVVLQP  245 (289)
T ss_dssp             CEECTTCEEESSCEECTTCEECTTCEECSC
T ss_pred             eEECCCCEEecCcEECCCCEECCCCEEccC
Confidence            6777777765 6777777777777777653

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=98.58  E-value=6.4e-08  Score=88.58  Aligned_cols=29  Identities=28%  Similarity=0.525  Sum_probs=24.3

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEccC
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK  319 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~  319 (353)
                      +.||.++.|. +++||+++.||+++++..+
T Consensus       230 v~IGaga~Ilggv~IG~~a~IGagsvV~~d  259 (313)
T 3q1x_A          230 VTIGTGAKVLGNIIVGSHVRIGANCWIDRD  259 (313)
T ss_dssp             CEECTTCEEESSCEECSSEEECTTCEECSC
T ss_pred             CEECCCCEECCCcEECCCCEECCCCEECCC
Confidence            7888888887 7888999999999888765

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=98.51  E-value=1.1e-07  Score=88.81  Aligned_cols=15  Identities=20%  Similarity=0.029  Sum_probs=10.7

Q ss_pred             eEEecHHHHHHHHHh
Q 018622          136 VYVFKKDVLFKLLRW  150 (353)
Q Consensus       136 iyi~~~~vl~~~l~~  150 (353)
                      ++-++++++..+++.
T Consensus        82 ~~~~~~~~~~~~~~~   96 (387)
T 2rij_A           82 VQTLKLEDIDFALSC   96 (387)
T ss_dssp             EEECCHHHHHHHHHH
T ss_pred             eEeCCHHHHHHHHHH
Confidence            667888888766654

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.50  E-value=1.2e-07  Score=82.31  Aligned_cols=16  Identities=13%  Similarity=0.335  Sum_probs=11.0

Q ss_pred             eeEEcCCcEECCCCEE
Q 018622          248 HSIVGERSRLDYGVEL  263 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i  263 (353)
                      ++.||++|.|+++|+|
T Consensus        58 ~v~IG~~~~I~~~v~i   73 (212)
T 3eev_A           58 KLVIGSFCSIGSGAVF   73 (212)
T ss_dssp             CEEECSSCEECTTCEE
T ss_pred             CcEECCCCEECCCCEE
Confidence            4677777777777765

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=98.49  E-value=6.9e-07  Score=76.49  Aligned_cols=28  Identities=18%  Similarity=0.296  Sum_probs=17.2

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEcc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~  318 (353)
                      +.||.++.|. ++.||+++.||+++++..
T Consensus       139 v~IG~~~~I~~gv~IG~~~vIgagsvV~~  167 (195)
T 3nz2_A          139 VWIGGNVVINQGVTIGARSVVAANSVVNQ  167 (195)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CEEcCCCEECCCCEECCCCEECCCCEEcc
Confidence            5666666664 566666666666666654

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=98.47  E-value=5.6e-07  Score=76.70  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=14.8

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIV  317 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~  317 (353)
                      +.||.++.|. ++.||+++.||+++++.
T Consensus       141 v~IG~~~~I~~gv~IG~~~vIgagsvV~  168 (190)
T 3hjj_A          141 VWVGGGAIINPGVSIGDNAVIASGAVVT  168 (190)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEEC
Confidence            4555555554 55555555555555554

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=98.46  E-value=3.2e-07  Score=80.50  Aligned_cols=144  Identities=10%  Similarity=-0.002  Sum_probs=91.7

Q ss_pred             cccHHHHHHHHHHhhhhccC--CCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           19 QGTADAVRQFTWVFEDAKNR--NIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        19 lGT~~al~~a~~~i~~~~~~--~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      .|++++++.+..++.+. ..  ..+.+++++||.  +...+++++++.|.+.++  .+++.+..+  +     +..+++|
T Consensus        84 ~~~~~~i~~~l~~~~~~-~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~~~~~~--~-----~~~~~~g  153 (236)
T 2vsh_A           84 ADRNTSIKNIIEAIDAY-RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTVVEAVD--T-----IVESTNG  153 (236)
T ss_dssp             SSHHHHHHHHHHHHHHH-SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEEEECCS--C-----EEECSSS
T ss_pred             CchHHHHHHHHHHHHhh-ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEEEeccc--c-----EEEeCCC
Confidence            36788999998887420 01  136788999998  455689999999988765  344445433  2     2224567


Q ss_pred             -CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCch-hhhhhhhhhh-cCc
Q 018622           95 -RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF-GSEIIPAAIM-EHD  171 (353)
Q Consensus        95 -~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~-~~d~l~~l~~-~~~  171 (353)
                       ++..+.|++..                         ......|+|+++.|..+++..... ..+ ..+.+..+.+ ..+
T Consensus       154 ~~~~~~~~~~~~-------------------------~~~~~p~~f~~~~l~~~~~~~~~~-g~~~~~~~~~~l~~~~~~  207 (236)
T 2vsh_A          154 QFITDIPNRAHL-------------------------YQGQTPQTFRCKDFMDLYGSLSDE-EKEILTDACKIFVIKGKD  207 (236)
T ss_dssp             SBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTCCHH-HHHHCCSHHHHHHHTTCC
T ss_pred             CeeeeecChHHh-------------------------eeecCCcEecHHHHHHHHHHHHhc-CCCcCCCHHHHHHHcCCC
Confidence             78777665321                         111237899999887666532110 001 1222333333 357


Q ss_pred             EEEEEecceEeEcCCHHHHHHHHHhhc
Q 018622          172 VQAYIFRDYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       172 i~~~~~~g~w~dIgtp~~y~~a~~~ll  198 (353)
                      +..+..+++|+||+||++|..++..+.
T Consensus       208 v~~~~~~~~~~dIdtpeDl~~a~~~~~  234 (236)
T 2vsh_A          208 VALAKGEYSNLKITTVTDLKIAKSMIE  234 (236)
T ss_dssp             EEEEECCTTCCCCCSHHHHHHHHHHTC
T ss_pred             EEEEECCccccCcCCHHHHHHHHHHhh
Confidence            888888889999999999999886553

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=98.43  E-value=4.7e-07  Score=78.78  Aligned_cols=140  Identities=13%  Similarity=-0.039  Sum_probs=92.0

Q ss_pred             ccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622           20 GTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA   97 (353)
Q Consensus        20 GT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~   97 (353)
                      +++++++.+...++     ..+.++++.||.  +...++.++++.|. ++.++++++.+..+  +..|    .|++|++.
T Consensus        78 ~~~~~i~~al~~~~-----~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~~d--~~~~----~~~~g~~~  145 (223)
T 2xwl_A           78 DRTESVALALEAAG-----DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAPAD--TIKA----VDANGAVL  145 (223)
T ss_dssp             SHHHHHHHHHTTCT-----TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECCSS--CEEE----ECTTSBEE
T ss_pred             CHHHHHHHHHHhcC-----CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEeccc--ceEE----EcCCCcEE
Confidence            46888999987772     236789999998  34557899999883 34466776666543  3222    36778888


Q ss_pred             EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhh-cCcEEEEE
Q 018622           98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIM-EHDVQAYI  176 (353)
Q Consensus        98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~-~~~i~~~~  176 (353)
                      .+.|++..                         ......|+|+++.+...++...   ..+..+....+.. ..++..+.
T Consensus       146 ~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~  197 (223)
T 2xwl_A          146 GTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT---AGGVTDDASLVEQLGTPVQIVD  197 (223)
T ss_dssp             ECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC---SCCCCCHHHHHHTTTCCCEEEE
T ss_pred             eecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh---CCCCccHHHHHHHcCCCEEEEE
Confidence            87776421                         1112358899988876654321   1222333333322 35788888


Q ss_pred             ecceEeEcCCHHHHHHHHHhhcc
Q 018622          177 FRDYWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       177 ~~g~w~dIgtp~~y~~a~~~ll~  199 (353)
                      .+++|+||+||++|.+++..+..
T Consensus       198 ~~~~~~dIdtpeDl~~a~~~l~~  220 (223)
T 2xwl_A          198 GDPLAFKITTPLDLVLAEAVLAH  220 (223)
T ss_dssp             CCGGGCCCCSHHHHHHHHHHHHH
T ss_pred             CCcccccccCHHHHHHHHHHHhh
Confidence            88899999999999999876543

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=98.41  E-value=3e-07  Score=80.47  Aligned_cols=142  Identities=12%  Similarity=0.056  Sum_probs=93.6

Q ss_pred             ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      ..|++++++.+...++.    ..+.|++++||.  +...++.++++.|+++++++++++.+..+. +  ++...+|++|+
T Consensus        79 ~~g~~~sv~~~l~~~~~----~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~-p--~~~~~~~~~g~  151 (228)
T 1ezi_A           79 TASSISGVIHALETIGS----NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHH-P--LKTLLQINNGE  151 (228)
T ss_dssp             -CHHHHHHHHHHHHHTC----CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSC-T--TSCEEECC--C
T ss_pred             CCChHHHHHHHHHHhCC----CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCC-c--ceeeEEcCCCc
Confidence            45789999999988841    236799999998  345679999998887777888887776541 2  33333477788


Q ss_pred             eeEEEeCCC-ccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEE
Q 018622           96 IAQFAEKPS-GANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQA  174 (353)
Q Consensus        96 V~~~~ekp~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~  174 (353)
                      +..|.++.. .+..+.+               ......+.|+|+++++.|...+        .    +     ...++..
T Consensus       152 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~giy~~~~~~l~~~~--------~----~-----~g~~v~~  199 (228)
T 1ezi_A          152 YAPMRHLSDLEQPRQQL---------------PQAFRPNGAIYINDTASLIANN--------C----F-----FIAPTKL  199 (228)
T ss_dssp             EEESSCHHHHTCCGGGS---------------CCEEEEEEEEEEEEHHHHHHHT--------S----S-----CCSSCEE
T ss_pred             EeeccccccccCCcccC---------------chhheeeeEEEEEeHHHHhhCC--------c----c-----cCCceEE
Confidence            888866210 0000000               0113457899999998875321        0    1     1457777


Q ss_pred             EEec-ceEeEcCCHHHHHHHHHhhc
Q 018622          175 YIFR-DYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       175 ~~~~-g~w~dIgtp~~y~~a~~~ll  198 (353)
                      +..+ .+|+||+||++|..|+..+.
T Consensus       200 ~~~~~~~~~dIdtpeDl~~a~~~l~  224 (228)
T 1ezi_A          200 YIMSHQDSIDIDTELDLQQAENILN  224 (228)
T ss_dssp             EECCTGGGCCCCSHHHHHHHHHHHC
T ss_pred             EEeCcccccCCCCHHHHHHHHHHHH
Confidence            8776 58999999999999876654

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.37  E-value=2.7e-07  Score=79.88  Aligned_cols=16  Identities=19%  Similarity=0.345  Sum_probs=12.0

Q ss_pred             eeEEcCCcEECCCCEE
Q 018622          248 HSIVGERSRLDYGVEL  263 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i  263 (353)
                      +++||++|.|++++.|
T Consensus        60 ~v~IG~~~~Ig~gv~I   75 (209)
T 1mr7_A           60 KLKIGKFCSIGPGVTI   75 (209)
T ss_dssp             CEEECSSCEECTTCEE
T ss_pred             CEEECCCCEEcCCCEE
Confidence            4677777777777776

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.35  E-value=1.8e-06  Score=74.93  Aligned_cols=19  Identities=0%  Similarity=-0.069  Sum_probs=11.7

Q ss_pred             EcCCcEECCCCEEeceEEE
Q 018622          251 VGERSRLDYGVELKDTVML  269 (353)
Q Consensus       251 ig~~~~ig~~~~i~~~v~~  269 (353)
                      +++++.||++|.|...+.+
T Consensus        55 i~~~v~IG~~~~I~~~v~i   73 (212)
T 3eev_A           55 DVDKLVIGSFCSIGSGAVF   73 (212)
T ss_dssp             SSCCEEECSSCEECTTCEE
T ss_pred             ccCCcEECCCCEECCCCEE
Confidence            5556666666666666543

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.34  E-value=4.9e-07  Score=78.76  Aligned_cols=20  Identities=35%  Similarity=0.459  Sum_probs=13.5

Q ss_pred             ceEeCCCCEECCCeEEccCC
Q 018622          301 NCIIDKNVKIGKDVVIVNKD  320 (353)
Q Consensus       301 ~~iig~~~~Ig~~~~i~~~~  320 (353)
                      +++||++|.||.++++.++.
T Consensus       118 ~v~Igd~v~IG~~a~I~~gv  137 (219)
T 4e8l_A          118 DIEIGNDVWIGRDVTIMPGV  137 (219)
T ss_dssp             CEEECSSCEECTTCEECTTC
T ss_pred             CcEECCCeEECCCCEEcCCC
Confidence            56777777777777776553

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=98.26  E-value=1e-05  Score=69.51  Aligned_cols=28  Identities=21%  Similarity=0.408  Sum_probs=18.2

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEcc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~  318 (353)
                      +.||.++.|. ++.||+++.||+++++..
T Consensus       138 v~IG~~a~I~~gv~IG~~~vIgagsvV~~  166 (203)
T 1krr_A          138 VWIGSHVVINPGVTIGDNSVIGAGSIVTK  166 (203)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             eEECCCCEEeCCeEECCCCEECCCCEECC
Confidence            5666666665 566666666666666654

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=98.25  E-value=1.8e-06  Score=84.19  Aligned_cols=121  Identities=17%  Similarity=0.191  Sum_probs=82.2

Q ss_pred             ccccccHHHHHHHHH--HhhhhccCCCCeEEEEeCCeE-EecCHHHHHHHHHHCCCcEEEEEEE-eCCCCCCcceEEEEC
Q 018622           16 NWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAA-VGESRASDYGLVKID   91 (353)
Q Consensus        16 ~~~lGT~~al~~a~~--~i~~~~~~~~~~flV~~gD~i-~~~dl~~~~~~h~~~~a~~tll~~~-~~~~~~~~~g~v~~d   91 (353)
                      ..++||||.++.+..  .+++......++|+|+++|++ ...+...++.+|.++++++++.+.+ ..+  ..+||++..+
T Consensus       218 ~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~--~e~~Gvl~~~  295 (505)
T 1jv1_A          218 MAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNP--TEPVGVVCRV  295 (505)
T ss_dssp             EEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCST--TCSCCEEEEE
T ss_pred             cCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccccccchHHHHHHHHHcCCCEEEEEEEccCC--ccCcceEEEE
Confidence            458999999987653  222111124589999999996 8787789999999999999998886 444  5789998874


Q ss_pred             CCCCe--eEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHh
Q 018622           92 NMGRI--AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW  150 (353)
Q Consensus        92 ~~g~V--~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~  150 (353)
                       +|++  +.|.|+|.......   +      ..+.  ...++.|+|+|+|+.++|+.++++
T Consensus       296 -dg~~~vvEy~E~p~~~~~~~---~------~~g~--~~~~~~N~~~~~f~l~~L~~i~~~  344 (505)
T 1jv1_A          296 -DGVYQVVEYSEISLATAQKR---S------SDGR--LLFNAGNIANHFFTVPFLRDVVNV  344 (505)
T ss_dssp             -TTEEEEECGGGSCHHHHHCB---C------TTSS--BSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred             -CCeEEEEEEeeCCHHHhhhc---c------cccc--cccceeeEEEEEecHHHHHHHHHh
Confidence             4554  44555554221100   0      0000  124689999999999999887653

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=98.22  E-value=1.6e-06  Score=76.95  Aligned_cols=150  Identities=11%  Similarity=0.041  Sum_probs=99.5

Q ss_pred             cccHHHHHHHHHHhhhhcc-CCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           19 QGTADAVRQFTWVFEDAKN-RNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        19 lGT~~al~~a~~~i~~~~~-~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      .+..+++++++.++.+... ...+.++++.||.  +....++++++.|.+.++.++  +.+..+      .++..++++.
T Consensus        83 ~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~--~~~~~d------~i~~~~~~~~  154 (246)
T 3f1c_A           83 EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDT--VIEALD------TIVESSNHEV  154 (246)
T ss_dssp             SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEE--EEECSS------CEEECSSSSB
T ss_pred             CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEE--EEeccc------eEEEecCCCe
Confidence            4568899999998863000 1247899999997  556779999999988775433  444332      3445455566


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc-CcEEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQA  174 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~-~~i~~  174 (353)
                      +..+.+|+...                         ..-.-++|+.+.|..++++.......+.+|.+..+.+. .++..
T Consensus       155 v~~~~~r~~l~-------------------------~~qtpq~f~~~~L~~a~~~~~~~~~~~~TD~~~~~~~~g~~v~~  209 (246)
T 3f1c_A          155 ITDIPVRDHMY-------------------------QGQTPQSFNMKKVFNHYQNLTPEKKQILTDACKICLLAGDDVKL  209 (246)
T ss_dssp             CCBCCCGGGEE-------------------------EEEEEEEEEHHHHHHHHHTSCHHHHHHCCCHHHHHHHTTCCCEE
T ss_pred             EEEecChHHhh-------------------------hhcCCceeEHHHHHHHHHHHHHcCCCccCcHHHHHHHcCCCEEE
Confidence            76666665321                         11135699998887777643111112345555544443 68999


Q ss_pred             EEecceEeEcCCHHHHHHHHHhhccCC
Q 018622          175 YIFRDYWEDIGTIKSFYEANMALTKES  201 (353)
Q Consensus       175 ~~~~g~w~dIgtp~~y~~a~~~ll~~~  201 (353)
                      ++.+.+|++|++|++|..|+..+..+.
T Consensus       210 v~~~~~~~~Itt~~Dl~~ae~~l~~~~  236 (246)
T 3f1c_A          210 VKGEIFNIKITTPYDLKVANAIIQERI  236 (246)
T ss_dssp             EECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred             EeCCCCccCcCCHHHHHHHHHHHhccc
Confidence            999999999999999999998776553

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.22  E-value=1.6e-06  Score=75.08  Aligned_cols=17  Identities=12%  Similarity=0.405  Sum_probs=13.1

Q ss_pred             eeeEEcCCcEECCCCEE
Q 018622          247 EHSIVGERSRLDYGVEL  263 (353)
Q Consensus       247 ~~~~ig~~~~ig~~~~i  263 (353)
                      ....||++|.|+++|+|
T Consensus        55 ~~i~IG~~~~Ig~~v~i   71 (212)
T 1xat_A           55 DKLVIGSFCSIGSGAAF   71 (212)
T ss_dssp             CCEEECSSCEECTTCEE
T ss_pred             cCEEEcCCCEECCCCEE
Confidence            45778888888888876

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=98.18  E-value=1.8e-06  Score=75.68  Aligned_cols=137  Identities=14%  Similarity=0.099  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeEE
Q 018622           22 ADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF   99 (353)
Q Consensus        22 ~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~   99 (353)
                      .++|+.+...+.     ..+.|++++||.  +...++.++++.|.+.+++.++.+.+..+  +..+++  .|  + +..|
T Consensus        82 ~~~v~~al~~~~-----~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~--p~~~~v--~~--~-~~~~  149 (229)
T 1qwj_A           82 LDAIVEFLNYHN-----EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQ--FRWSEI--QK--G-VREV  149 (229)
T ss_dssp             HHHHHHHHTTCT-----TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECC--CEECCC--CS--S-TTCC
T ss_pred             HHHHHHHHHhcC-----CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccC--hhHhhc--cc--c-cccc
Confidence            478888887763     247899999998  34567999999998888876665554332  333432  23  2 2223


Q ss_pred             EeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE-Eec
Q 018622          100 AEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY-IFR  178 (353)
Q Consensus       100 ~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~-~~~  178 (353)
                      .+++......+  ..+      +.  .......++|+|+|+++.|   +.               .+.....+ .+ .++
T Consensus       150 ~~~~~~~~~~~--~~~------~~--~~~~~~~n~giY~~~~~~l---~~---------------~~~~g~~~-~~~~~~  200 (229)
T 1qwj_A          150 TEPLNLNPAKR--PRR------QD--WDGELYENGSFYFAKRHLI---EM---------------GYLQGGKM-AYYEMR  200 (229)
T ss_dssp             CCBSSSBTTBC--CCT------TT--SCCEEEEEEEEEEEEHHHH---HT---------------TCSSCSSE-EEEECC
T ss_pred             ccccccccccc--cCC------CC--CCceEEEeeEEEEEEHHHh---cc---------------ccccCCeE-EEEECC
Confidence            22110000000  000      00  0012467999999999887   11               11122344 34 555


Q ss_pred             -ceEeEcCCHHHHHHHHHhhcc
Q 018622          179 -DYWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       179 -g~w~dIgtp~~y~~a~~~ll~  199 (353)
                       ++|+||+||++|..|+..+..
T Consensus       201 ~~~~~dIdt~~Dl~~a~~~~~~  222 (229)
T 1qwj_A          201 AEHSVDIDVDIDWPIAEQRVLR  222 (229)
T ss_dssp             GGGCCCHHHHCSHHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHHHH
Confidence             689999999999999876553

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.13  E-value=6.5e-06  Score=71.62  Aligned_cols=17  Identities=18%  Similarity=0.305  Sum_probs=11.7

Q ss_pred             eeEEcCCcEECCCCEEe
Q 018622          248 HSIVGERSRLDYGVELK  264 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i~  264 (353)
                      ++.||++|.|+++|.|.
T Consensus        65 ~v~IG~~~~I~~gv~I~   81 (219)
T 4e8l_A           65 KLIIGRFCSIGPGTTFI   81 (219)
T ss_dssp             CEEECSSCEECTTCEEE
T ss_pred             CEEECCCCEEcCCCEEE
Confidence            46777777777777763

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=98.07  E-value=3.6e-05  Score=67.03  Aligned_cols=145  Identities=12%  Similarity=0.042  Sum_probs=84.5

Q ss_pred             ccccHHHHHHHHHHhhhhcc-CCCCeEEEEeCCe-E-EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           18 FQGTADAVRQFTWVFEDAKN-RNIENVAILCGDH-L-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        18 ~lGT~~al~~a~~~i~~~~~-~~~~~flV~~gD~-i-~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      ..|++++++.+...+.+... ...+.+++++||. + ....+.++++.|.+.+.. .+++.+..+  ..     ..+++|
T Consensus        81 ~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~-~~~~~~~~~--~~-----~~~~~g  152 (231)
T 1vgw_A           81 GQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEG-GILAVPVAD--TL-----KRAESG  152 (231)
T ss_dssp             CSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTC-EEEEEECCS--CE-----EEESSS
T ss_pred             CCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCe-EEEEeeccc--ce-----EEeCCC
Confidence            45799999999888741000 0247899999997 3 345689999988765522 344444432  21     112346


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQA  174 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~  174 (353)
                      ++....++..                        ..... ..|+|+++.|..+++............++..+  ..++..
T Consensus       153 ~i~~~~~~~~------------------------~~~~~-~p~~f~~~~l~~~~~~~~~~g~~~~~~~~~~~--~~~v~~  205 (231)
T 1vgw_A          153 QISATVDRSG------------------------LWQAQ-TPQLFQAGLLHRALAAENLGGITDEASAVEKL--GVRPLL  205 (231)
T ss_dssp             BEEEEECCTT------------------------EEEEE-EEEEEEHHHHHHHHHC----CCCSHHHHHHTT--TCCCEE
T ss_pred             ceEecCChHH------------------------heeee-CCcEecHHHHHHHHHHHhhcCCCcHHHHHHHc--CCCEEE
Confidence            5543322210                        11223 48999999887666532111110011222221  357888


Q ss_pred             EEecceEeEcCCHHHHHHHHHhh
Q 018622          175 YIFRDYWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       175 ~~~~g~w~dIgtp~~y~~a~~~l  197 (353)
                      +..++.|+||+||++|..++..+
T Consensus       206 v~~~~~~~dIdtpeDl~~a~~~l  228 (231)
T 1vgw_A          206 IQGDARNLKLTQPQDAYIVRLLL  228 (231)
T ss_dssp             EECCTTCCCCCSHHHHHHHHHHC
T ss_pred             EECCccccCcCCHHHHHHHHHHH
Confidence            88788999999999999987654

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=98.01  E-value=1e-05  Score=70.51  Aligned_cols=142  Identities=12%  Similarity=0.030  Sum_probs=86.4

Q ss_pred             cccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCe
Q 018622           19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI   96 (353)
Q Consensus        19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V   96 (353)
                      .|..++++.++.++.+    ..+.++++.||.  +...+++++++.|.+.++  ++++.+..+  .    +..+|+++.+
T Consensus        81 ~~~~~sv~~al~~~~~----~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~~~~~~--~----~~~~~~~~~v  148 (228)
T 2yc3_A           81 KERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLGVPAKA--T----IKEVNSDSLV  148 (228)
T ss_dssp             SSHHHHHHHHHTTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEEEECCS--C----CCCBCTTSCB
T ss_pred             CCHHHHHHHHHHhhcc----CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEEEeccc--e----EEEEcCCCce
Confidence            4788999999987752    236788999996  445678999999877654  444544332  1    1123445555


Q ss_pred             eEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc-CcEEEE
Q 018622           97 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQAY  175 (353)
Q Consensus        97 ~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~-~~i~~~  175 (353)
                      ..+.+++.                        .....+ .|+|+++.|...+++....... ..+.+..+.+. .++..+
T Consensus       149 ~~~~~~~~------------------------~~~~~~-~~~f~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~g~~v~~~  202 (228)
T 2yc3_A          149 VKTLDRKT------------------------LWEMQT-PQVIKPELLKKGFELVKSEGLE-VTDDVSIVEYLKHPVYVS  202 (228)
T ss_dssp             CCCCSCCC------------------------CEEEEE-EEEECHHHHHHHHHHHHHHTCC-CCSTTHHHHHSSSCCEEE
T ss_pred             EEecCccc------------------------eEEEeC-CcEEEHHHHHHHHHHHHhcCCC-cccHHHHHHHcCCceEEE
Confidence            54322211                        122334 8999988776555432111111 23444444433 567655


Q ss_pred             EecceEeEcCCHHHHHHHHHhhc
Q 018622          176 IFRDYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       176 ~~~g~w~dIgtp~~y~~a~~~ll  198 (353)
                      .-+..|+||+||++|..|+..+.
T Consensus       203 ~~~~~~~dIdtpeDl~~a~~~l~  225 (228)
T 2yc3_A          203 QGSYTNIKVTTPDDLLLAERILS  225 (228)
T ss_dssp             ECCTTCCCCCSHHHHHHHHHHHT
T ss_pred             eCCccccCcCCHHHHHHHHHHHh
Confidence            55668999999999999876554

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=97.83  E-value=4.5e-05  Score=66.97  Aligned_cols=139  Identities=8%  Similarity=-0.071  Sum_probs=83.5

Q ss_pred             ccHHHHHHHHHHhhhhccCCCCeEEEEeCCe-EE-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622           20 GTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA   97 (353)
Q Consensus        20 GT~~al~~a~~~i~~~~~~~~~~flV~~gD~-i~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~   97 (353)
                      |++++++.+...++      .+.+++++||. +. ...+.++++.+.+.++  .+.+.+..+  +..+    .+ +|++.
T Consensus        92 ~~~~~i~~al~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~i~~~~~~~--~~~~----~~-~G~v~  156 (236)
T 2px7_A           92 TRQASVARLLEAAS------LPLVLVHDVARPFVSRGLVARVLEAAQRSGA--AVPVLPVPD--TLMA----PE-GEAYG  156 (236)
T ss_dssp             SHHHHHHHHHHHCC------SSEEEECCTTCCCCCHHHHHHHHHHHHHHSE--EEEEEECCS--EEEE----EC-SSSCE
T ss_pred             chHHHHHHHHHHcC------CCeEEEecCccccCCHHHHHHHHHHHHhcCC--eEEEEecCC--cEEE----ec-CCeEE
Confidence            56888998887774      37799999997 33 4568899988876543  443444332  2122    24 67877


Q ss_pred             EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhh-hcCcEEEEE
Q 018622           98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYI  176 (353)
Q Consensus        98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~-~~~~i~~~~  176 (353)
                      .+.++..                        ...+.. .++|+++.|..+++........ ..+....+. ...++..+.
T Consensus       157 ~~~~~~~------------------------~~~~~~-~~~f~~~~l~~~~~~~~~~g~~-~~d~~~ll~~~~~~v~~v~  210 (236)
T 2px7_A          157 RVVPREA------------------------FRLVQT-PQGFFTALLREAHAYARRKGLE-ASDDAQLVQALGYPVALVE  210 (236)
T ss_dssp             EEECGGG------------------------CEEECS-CEEEEHHHHHHHHHHHHHHTCC-CSSHHHHHHHTTCCCEEEE
T ss_pred             ecCChHh------------------------hccccC-CeEEcHHHHHHHHHHHHhcCCC-chhHHHHHHHcCCcEEEEE
Confidence            6654311                        112223 5678888776555432110011 112111111 135788888


Q ss_pred             ecceEeEcCCHHHHHHHHHhhcc
Q 018622          177 FRDYWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       177 ~~g~w~dIgtp~~y~~a~~~ll~  199 (353)
                      .++.|+||+||++|..++..+..
T Consensus       211 ~~~~~~dIdtpeDl~~a~~~l~~  233 (236)
T 2px7_A          211 GEATAFKITHPQDLVLAEALARV  233 (236)
T ss_dssp             CCTTCCCCCSHHHHHHHHHHHTC
T ss_pred             CCccccCCCCHHHHHHHHHHHHh
Confidence            88899999999999998866543

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=97.81  E-value=7.7e-06  Score=70.68  Aligned_cols=20  Identities=50%  Similarity=0.645  Sum_probs=13.4

Q ss_pred             ceEeCCCCEECCCeEEccCC
Q 018622          301 NCIIDKNVKIGKDVVIVNKD  320 (353)
Q Consensus       301 ~~iig~~~~Ig~~~~i~~~~  320 (353)
                      +++||++|.||.++++.++.
T Consensus       113 ~v~Ig~~v~IG~~a~I~~gv  132 (209)
T 1mr7_A          113 DTIIGNDVWIGKDVVIMPGV  132 (209)
T ss_dssp             CEEECSSCEECTTCEECTTC
T ss_pred             CcEECCCCEEcCCCEEcCCC
Confidence            46677777777777776553

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=97.60  E-value=0.00024  Score=61.32  Aligned_cols=17  Identities=0%  Similarity=-0.001  Sum_probs=9.8

Q ss_pred             CCcEECCCCEEeceEEE
Q 018622          253 ERSRLDYGVELKDTVML  269 (353)
Q Consensus       253 ~~~~ig~~~~i~~~v~~  269 (353)
                      ..+.||++|.|+..+.+
T Consensus        55 ~~i~IG~~~~Ig~~v~i   71 (212)
T 1xat_A           55 DKLVIGSFCSIGSGAAF   71 (212)
T ss_dssp             CCEEECSSCEECTTCEE
T ss_pred             cCEEEcCCCEECCCCEE
Confidence            44566666666665543

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=97.37  E-value=0.00059  Score=66.22  Aligned_cols=163  Identities=12%  Similarity=0.074  Sum_probs=100.4

Q ss_pred             ccccccHHHHHHH-----HHHhhhhccCCCCeEEEEeCCeEE-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEE
Q 018622           16 NWFQGTADAVRQF-----TWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVK   89 (353)
Q Consensus        16 ~~~lGT~~al~~a-----~~~i~~~~~~~~~~flV~~gD~i~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~   89 (353)
                      ..+.||||+++..     ++.+.   ....++|+|.|+|+++ ..|+ .++.+|.++++++++.+.+...+ ...+|++.
T Consensus       186 ~~P~G~Gg~~~aL~~sGlL~~l~---~~G~e~i~V~N~DNL~~~~D~-~llg~~~~~~ad~~~~v~~k~~~-d~~~Gvl~  260 (505)
T 2oeg_A          186 WAPPGHGDIYTALYGSGKLQELV---EQGYRYMFVSNGDNLGATIDK-RVLAYMEKEKIDFLMEVCRRTES-DKKGGHLA  260 (505)
T ss_dssp             EECCCTTHHHHHHHHTTHHHHHH---HTTCCEEEEECTTCTTCCCCH-HHHHHHHHHTCSEEEEEEECCTT-CCSSEEEE
T ss_pred             cCcCCchHHHHHHHhcChHHHHH---hcCCCEEEEEECCccccccCH-HHHHHHHhcCCcEEEEEEEecCC-ccceeEEE
Confidence            4588999999755     33322   1245899999999987 4577 99999999999999998886651 25788887


Q ss_pred             EC------CCCC-------eeEEEe---CCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhC-
Q 018622           90 ID------NMGR-------IAQFAE---KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY-  152 (353)
Q Consensus        90 ~d------~~g~-------V~~~~e---kp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~-  152 (353)
                      .+      .+|+       +. +.|   -|...... .   +.       .  ....+.|+....|+-+++..+++... 
T Consensus       261 ~~~~~~~~~dg~~nvEyn~~~-llEyse~p~e~~~~-~---~g-------~--~~f~~~Ninn~~~~l~~l~~~~~~~~~  326 (505)
T 2oeg_A          261 RQTVYVKGKDGQPDAEKRVLL-LRESAQCPKADMES-F---QD-------I--NKYSFFNTNNLWIRLPVLLETMQEHGG  326 (505)
T ss_dssp             EEEEEECCSSSCCCEEEEEEE-EEEGGGSCGGGHHH-H---HC-------T--TTTCEEEEEEEEEEHHHHHHHHHHTTS
T ss_pred             EecccccccCCccccccCcee-EEEeccCChhhhhc-c---cC-------c--cccCeeEEEEEEEEHHHHHHHHhhhcC
Confidence            63      4577       42 444   23221100 0   00       0  01245789999999999988877521 


Q ss_pred             ----CC-----CCc--------------hhhhhhhhhhhcCcEEEEEec-ceEeEcCCHHHHHHHHHhhccC
Q 018622          153 ----PT-----SND--------------FGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKE  200 (353)
Q Consensus       153 ----~~-----~~~--------------~~~d~l~~l~~~~~i~~~~~~-g~w~dIgtp~~y~~a~~~ll~~  200 (353)
                          +.     ..+              +..|+++.+   .+..++.++ ..+.-+-+..++..+.++++..
T Consensus       327 ~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~---~~~~~~~V~R~~FsPvKn~~dl~~~~sdly~~  395 (505)
T 2oeg_A          327 TLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMF---ESASAIVVPRSRFAPVKTCADLLALRSDAYVV  395 (505)
T ss_dssp             SCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSC---TTCEEEECCGGGCCCCSSHHHHHHHHSTTEEE
T ss_pred             ccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhc---CcceEEEeccceeecccCCCCHHHHHHHHHhh
Confidence                10     000              111222211   233444442 2567788888888888777754

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=97.25  E-value=0.0017  Score=56.56  Aligned_cols=143  Identities=13%  Similarity=0.030  Sum_probs=82.1

Q ss_pred             cccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE-E-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC-CC
Q 018622           19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM-GR   95 (353)
Q Consensus        19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i-~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~-g~   95 (353)
                      .|+.++++.+...+.     ..+.|++++||.. . ...+.++++.|.+.++.. +++.+..+  .  +  -..+++ |+
T Consensus        83 ~g~~~~i~~al~~~~-----~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~~~~~~--~--~--~~~~~~~~~  150 (236)
T 1i52_A           83 DERADSVLAGLKAAG-----DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVRD--T--M--KRAEPGKNA  150 (236)
T ss_dssp             SSHHHHHHHHHHTST-----TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEEEECCS--C--E--EEECTTSSS
T ss_pred             CCHHHHHHHHHHhcC-----CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEEEeccc--c--E--EEEcCCCCc
Confidence            478899999988774     1478999999983 3 446888888876665333 33333322  1  1  112444 45


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccc-eeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhh-cCcEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-MGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIM-EHDVQ  173 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~-~~~i~  173 (353)
                      +....++                          ..++. -+.++|+.+.|...++........ ..+....+.. ..++.
T Consensus       151 i~~~~~~--------------------------~~i~~~~~p~~f~~~~l~~~~~~~~~~g~~-~td~~~~~~~~~~~v~  203 (236)
T 1i52_A          151 IAHTVDR--------------------------NGLWHALTPQFFPRELLHDCLTRALNEGAT-ITDEASALEYCGFHPQ  203 (236)
T ss_dssp             EEEEECC--------------------------TTCEEEEEEEEEEHHHHHHHHHHHHHTTCC-CCSHHHHHHHTTCCCE
T ss_pred             eeeccCh--------------------------HhheeeeCCceecHHHHHHHHHHHHhcCCC-cccHHHHHHHcCCCEE
Confidence            4332211                          11222 256678887775555432111111 1111111111 35788


Q ss_pred             EEEecceEeEcCCHHHHHHHHHhhccC
Q 018622          174 AYIFRDYWEDIGTIKSFYEANMALTKE  200 (353)
Q Consensus       174 ~~~~~g~w~dIgtp~~y~~a~~~ll~~  200 (353)
                      .+..++.|+||+||++|..++..+..+
T Consensus       204 ~v~~~~~~~dIdtpeDl~~a~~~~~~~  230 (236)
T 1i52_A          204 LVEGRADNIKVTRPEDLALAEFYLTRT  230 (236)
T ss_dssp             EEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred             EEecCccccccCCHHHHHHHHHHHHHh
Confidence            888888999999999999998766543

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=97.18  E-value=0.00076  Score=63.52  Aligned_cols=120  Identities=13%  Similarity=0.063  Sum_probs=82.8

Q ss_pred             ccccccHHHHHHHHH--HhhhhccCCCCeEEEEeCCe-EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEE-C
Q 018622           16 NWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDH-LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-D   91 (353)
Q Consensus        16 ~~~lGT~~al~~a~~--~i~~~~~~~~~~flV~~gD~-i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~-d   91 (353)
                      ..+.|+|+.++....  .+++.....-+++++.+.|+ +.......++.+|.++++++++-+.+...+ ..+.|++.. |
T Consensus       152 ~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~-dek~Gvl~~~d  230 (405)
T 3oc9_A          152 MAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFK-EEKVGVLVKEQ  230 (405)
T ss_dssp             EEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEEET
T ss_pred             cccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCC-CCccceEEEEC
Confidence            458899998875432  23222123457999999999 888888999999999999999988876541 267888774 5


Q ss_pred             CCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHH
Q 018622           92 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLL  148 (353)
Q Consensus        92 ~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l  148 (353)
                      +..+|+.+.|.|.. ...+ ..+.        .  ...+..|.++|+|+.++|++++
T Consensus       231 g~~~vvEysei~~e-~e~~-~~~g--------~--l~fn~~Ni~~h~fs~~fL~~i~  275 (405)
T 3oc9_A          231 ERIKVVEYTELTDE-LNKQ-LSNG--------E--FIYNCGHISINGYSTSFLEKAA  275 (405)
T ss_dssp             TEEEEECGGGCCTT-TTCB-CTTS--------C--BSSCEEEEEEEEEEHHHHHHHT
T ss_pred             CeeEEEEEeeCCHH-Hhhc-CCCC--------c--eeeccceeEeeecCHHHHHHhh
Confidence            44477777777765 2111 0000        0  1235678999999999998775

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=97.03  E-value=0.00083  Score=56.61  Aligned_cols=114  Identities=13%  Similarity=0.095  Sum_probs=68.4

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      ++.+|++++++.+..++..    +.+.+++++||..  ...+++++++.  +.++++++...                 +
T Consensus        76 ~~~~g~~~~i~~al~~~~~----~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~~-----------------~  132 (197)
T 2wee_A           76 DVERGCAASLRVALARVHP----RATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCRY-----------------A  132 (197)
T ss_dssp             ----CCHHHHHHHHTTSCT----TEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEEE-----------------T
T ss_pred             CcccCHHHHHHHHHHHhcc----cCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEec-----------------C
Confidence            3457999999999987731    1368999999993  35678888876  44444432110                 1


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc--Cc
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME--HD  171 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~--~~  171 (353)
                      |+       +..                              -++|+++.|..+. .. ..  +   .-+..++++  .+
T Consensus       133 g~-------~~~------------------------------P~~~~~~~l~~l~-~~-~~--~---~~~~~~l~~~~~~  168 (197)
T 2wee_A          133 DG-------VGH------------------------------PFWFSRTVFGELA-RL-HG--D---KGVWKLVHSGRHP  168 (197)
T ss_dssp             TE-------EEE------------------------------EEEEEGGGHHHHH-TC-CS--T---THHHHHHHCTTSC
T ss_pred             CC-------cCC------------------------------CEEECHHHHHHHH-hC-CC--C---hhHHHHHHhCccc
Confidence            11       100                              0267888886543 22 11  1   123344444  45


Q ss_pred             EEEEEe-cceEeEcCCHHHHHHHHHh
Q 018622          172 VQAYIF-RDYWEDIGTIKSFYEANMA  196 (353)
Q Consensus       172 i~~~~~-~g~w~dIgtp~~y~~a~~~  196 (353)
                      +..+.. .++|.||+||++|.+++..
T Consensus       169 v~~v~~~~~~~~dIdtpeDl~~~~~~  194 (197)
T 2wee_A          169 VRELAVDGCVPLDVDTWDDYRRLLES  194 (197)
T ss_dssp             EEEEECSSCCCCCCSSHHHHHHHHTC
T ss_pred             EEEEEcCcccccCCCCHHHHHHHHHH
Confidence            777776 4689999999999887643

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=96.99  E-value=0.0016  Score=54.91  Aligned_cols=116  Identities=14%  Similarity=0.120  Sum_probs=73.3

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      ++..|++++++.+..++..    ..+.+++++||..  ...+++++++.  +.++++++...               +  
T Consensus        76 ~~~~g~~~~i~~al~~~~~----~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~---------------~--  132 (199)
T 2waw_A           76 DAGLGCSSSLKSALTWVDP----TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY---------------A--  132 (199)
T ss_dssp             CCCTTCCCHHHHHHHTSCT----TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE---------------T--
T ss_pred             CcccCHHHHHHHHHHhhhc----cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec---------------C--
Confidence            3457899999999988731    2478999999995  36678888887  45555443211               1  


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc--Cc
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME--HD  171 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~--~~  171 (353)
                      ++       +..                              -++|+++.|..+.. . .....     +..++++  .+
T Consensus       133 g~-------~~~------------------------------P~~~~~~~l~~~~~-~-~~~~~-----~~~~l~~~~~~  168 (199)
T 2waw_A          133 NG-------IGH------------------------------PFWVSRGVFGDLAE-L-HGDKG-----VWRLIESGRHG  168 (199)
T ss_dssp             TE-------EEE------------------------------EEEEEGGGHHHHHT-C-SSTTC-----HHHHHHSSSSC
T ss_pred             Cc-------ccC------------------------------CEEEcHHHHHHHHh-c-CCCHH-----HHHHHHhCccc
Confidence            10       000                              13678888875542 1 11111     2333333  46


Q ss_pred             EEEEEe-cceEeEcCCHHHHHHHHHhhc
Q 018622          172 VQAYIF-RDYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       172 i~~~~~-~g~w~dIgtp~~y~~a~~~ll  198 (353)
                      +..+.. .++|.||+||++|.+++..+.
T Consensus       169 v~~~~~~~~~~~dIdtpeDl~~~~~~~~  196 (199)
T 2waw_A          169 VRRIRVDADVPLDVDTWDDYERLLASVV  196 (199)
T ss_dssp             EEEEECSSCCCCCCSSHHHHHHHHHHHH
T ss_pred             EEEEEcCcccccCCCCHHHHHHHHHHHh
Confidence            777777 468999999999998876543

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=96.95  E-value=0.0068  Score=52.49  Aligned_cols=137  Identities=11%  Similarity=0.081  Sum_probs=79.5

Q ss_pred             cHHHHHHHHHHhhhhccCCCCeEEEEeCCe-E-EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeE
Q 018622           21 TADAVRQFTWVFEDAKNRNIENVAILCGDH-L-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ   98 (353)
Q Consensus        21 T~~al~~a~~~i~~~~~~~~~~flV~~gD~-i-~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~   98 (353)
                      ..++++.+...+.+   ...+.+++++||. + ....+.++++.+.+.++  .+++.+..+      ++..++++| + .
T Consensus        91 ~~~sv~~al~~~~~---~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~--~i~~~~~~~------~~~~~~~~g-v-~  157 (234)
T 1vpa_A           91 RSQSVRSALEFLEK---FSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNSD------ALVRVENDR-I-E  157 (234)
T ss_dssp             HHHHHHHHHHHHGG---GCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECCS------EEEEEETTE-E-E
T ss_pred             HHHHHHHHHHHhhh---cCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEEEEecCC------cEEEECCCC-c-c
Confidence            56778888887741   0135678888998 3 44578999998876543  333444322      122335566 6 5


Q ss_pred             EEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEEEec
Q 018622           99 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR  178 (353)
Q Consensus        99 ~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~~~~  178 (353)
                      +.++..                         .+..-.-++|+++.|..+++.. ....+ ...++..  ...++..+..+
T Consensus       158 ~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~-~~~~~-~~~~~~~--~g~~v~~v~~~  208 (234)
T 1vpa_A          158 YIPRKG-------------------------VYRILTPQAFSYEILKKAHENG-GEWAD-DTEPVQK--LGVKIALVEGD  208 (234)
T ss_dssp             EECCTT-------------------------EEEEEEEEEEEHHHHHHHHTTC-CCCSS-SHHHHHT--TTCCCEEEECC
T ss_pred             cCChhH-------------------------eeeecCCccccHHHHHHHHHhc-CCCCc-HHHHHHH--cCCcEEEEECC
Confidence            554311                         0111123488888887665431 00011 1112221  13567777777


Q ss_pred             ceEeEcCCHHHHHHHHHhhcc
Q 018622          179 DYWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       179 g~w~dIgtp~~y~~a~~~ll~  199 (353)
                      +.|+||+||++|..++..+..
T Consensus       209 ~~~~dIdtpeDl~~a~~~l~~  229 (234)
T 1vpa_A          209 PLCFKVTFKEDLELARIIARE  229 (234)
T ss_dssp             GGGCCCCSTTHHHHHHHHHHH
T ss_pred             chhcCCCCHHHHHHHHHHHhc
Confidence            789999999999999875543

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=96.79  E-value=0.0053  Score=53.53  Aligned_cols=142  Identities=12%  Similarity=0.003  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeEE
Q 018622           22 ADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF   99 (353)
Q Consensus        22 ~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~   99 (353)
                      .+++++++..+.+  ....+.++++.||.  +....++++++.+.+ +.++.++..++.+  +-.|    .|++|.|...
T Consensus        84 ~~sv~~gl~~~~~--~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~p~~d--t~~~----~~~~g~v~~~  154 (231)
T 3q80_A           84 TDTVNLALTVLSG--TAEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVLPLSD--TIKA----VDANGVVLGT  154 (231)
T ss_dssp             HHHHHHHHGGGC-----CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEECCSS--CEEE----ECTTSBEEEC
T ss_pred             HHHHHHHHHHhhh--cCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEEeccC--CEEE----EcCCCcEEEe
Confidence            5788888887752  01236789999997  345568899988765 3456676666654  3222    4667877655


Q ss_pred             EeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-CCchhhhhhhhhhh-cCcEEEEEe
Q 018622          100 AEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SNDFGSEIIPAAIM-EHDVQAYIF  177 (353)
Q Consensus       100 ~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~~~~~~d~l~~l~~-~~~i~~~~~  177 (353)
                      .++..                        ...+.+ -++|+.+.|...+++...+ ...+.+|....+.. ..++..++-
T Consensus       155 ~~r~~------------------------l~~~qT-Pq~F~~~~L~~a~~~~~~~n~~~~~TD~~~~~~~~g~~v~~v~g  209 (231)
T 3q80_A          155 PERAG------------------------LRAVQT-PQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDG  209 (231)
T ss_dssp             CCGGG------------------------EEEECS-CEEEEHHHHHHHHHHHTC-----CCSSSHHHHHHTTCCCEEEEC
T ss_pred             cchhh------------------------eEEEcC-CcEEEHHHHHHHHHHHHhhcCCCCCCcHHHHHHHcCCcEEEEEC
Confidence            43211                        134455 4999999988777654321 11223444443332 357777776


Q ss_pred             cceEeEcCCHHHHHHHHHhh
Q 018622          178 RDYWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       178 ~g~w~dIgtp~~y~~a~~~l  197 (353)
                      +..++.|.+|+++..|+..+
T Consensus       210 ~~~n~kIt~p~Dl~~ae~~l  229 (231)
T 3q80_A          210 DPLAFKITTKLDLLLAQAIV  229 (231)
T ss_dssp             CGGGCCCCSHHHHHHHHHHH
T ss_pred             CccccCcCCHHHHHHHHHHh
Confidence            77789999999999887654

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=96.74  E-value=0.0012  Score=56.13  Aligned_cols=112  Identities=10%  Similarity=-0.021  Sum_probs=60.8

Q ss_pred             cccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE-e-cCHHH-HHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           17 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMD-FIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        17 ~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~-~-~dl~~-~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      +..|++++|+.+...++      .+.+++++||..+ + ..++. ++      +.++++.                .+ +
T Consensus        80 ~~~g~~~~i~~al~~~~------~~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v~----------------~~-~  130 (201)
T 2e8b_A           80 EESASIIGLYTALKHAK------EENVFVLSGDLPLMKKETVLYVLE------NFKEPVS----------------VA-K  130 (201)
T ss_dssp             SSCCHHHHHHHHHHHCS------SSEEEEEETTCTTCCHHHHHHHHH------TCCSSEE----------------EE-E
T ss_pred             CCCCcHHHHHHHHHHcC------CCCEEEEeCCcCcCCHHHHHHHHh------cCCEEEE----------------ec-C
Confidence            45799999999998775      3789999999943 3 33555 55      1122110                00 1


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEE
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQ  173 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~  173 (353)
                      |+                                  .....|+| |+++++..+.+........ ..+++..    .++.
T Consensus       131 g~----------------------------------~~p~~giy-~~~~~~~~l~~~~~~g~~~-~~~~l~~----~~~~  170 (201)
T 2e8b_A          131 TE----------------------------------KLHTLVGV-YSKKLLEKIEERIKKGDYR-IWALLKD----VGYN  170 (201)
T ss_dssp             SS----------------------------------SEEEEEEE-EEGGGHHHHHHHHHTTCCC-HHHHHHH----HCCE
T ss_pred             Cc----------------------------------eeeEEEEE-eChhHHHHHHHHHHcCCch-HHHHHHH----CCeE
Confidence            10                                  13467999 9999876543211112222 3344433    3566


Q ss_pred             EEEec--ceEe--EcCCHHHHHHHHHhh
Q 018622          174 AYIFR--DYWE--DIGTIKSFYEANMAL  197 (353)
Q Consensus       174 ~~~~~--g~w~--dIgtp~~y~~a~~~l  197 (353)
                      .+.++  +.|.  ||+||++|.+++..+
T Consensus       171 ~~~~~~~~~~~~~dintpedl~~~~~~~  198 (201)
T 2e8b_A          171 EVEIPEELRYTLLNMNTKEDLKRILAIE  198 (201)
T ss_dssp             EEECCGGGGGGGCCSCCC----------
T ss_pred             EeccccccchhhcCCCCHHHHHHHHHHh
Confidence            66663  5799  999999998876543

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=96.30  E-value=0.0054  Score=51.89  Aligned_cols=116  Identities=13%  Similarity=0.158  Sum_probs=63.3

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe-EE-ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM   93 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~-i~-~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~   93 (353)
                      .+..|++++|+.+...+.+     .+.+++++||. +. ...++++++.+ +.++++++...                 +
T Consensus        68 ~~~~G~~~si~~al~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~-----------------~  124 (197)
T 3d5n_A           68 FWNEGISTSLKLGLRFFKD-----YDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH-----------------K  124 (197)
T ss_dssp             TGGGCHHHHHHHHHHHTTT-----SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE-----------------T
T ss_pred             CCCCCHHHHHHHHHHhhcc-----CCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe-----------------C
Confidence            3457999999999988852     36899999999 33 34578888876 44554433221                 0


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhc--Cc
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME--HD  171 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~--~~  171 (353)
                      |+       +..                        -      .+|+++.|..+. .. ....+     +..++++  .+
T Consensus       125 g~-------~~~------------------------P------~~~~~~~l~~l~-~l-~g~~~-----~~~~l~~~~~~  160 (197)
T 3d5n_A          125 GE-------RGN------------------------P------VLISKSLFNEIE-KL-RGDVG-----ARVILNKIKIE  160 (197)
T ss_dssp             TE-------ECS------------------------C------EEEEHHHHHHHH-HC-CTTCC-----THHHHTTSCGG
T ss_pred             Cc-------ccC------------------------C------EEECHHHHHHHH-cc-CCCcc-----HHHHHHhCccC
Confidence            10       010                        0      278888887654 22 12122     1222333  35


Q ss_pred             EEEEEec--ceEeEcCCHHHHHHHHHhhc
Q 018622          172 VQAYIFR--DYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       172 i~~~~~~--g~w~dIgtp~~y~~a~~~ll  198 (353)
                      +..+..+  +.|+||+||++|..++..+.
T Consensus       161 v~~v~~~~~~~~~dIdTpeDl~~~~~~~~  189 (197)
T 3d5n_A          161 ELCFIECSEGVLIDIDKKEDLMRLRDFHP  189 (197)
T ss_dssp             GEEEEECCGGGTCCTTTC-----------
T ss_pred             eEEEEcCCCCcccCCCCHHHHHHHHHhhc
Confidence            6666654  57899999999988765443

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=96.06  E-value=0.0086  Score=58.01  Aligned_cols=123  Identities=15%  Similarity=0.233  Sum_probs=78.0

Q ss_pred             cccccHHHHHHHHH--HhhhhccCCCCeEEEEeCCeEE--ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECC
Q 018622           17 WFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN   92 (353)
Q Consensus        17 ~~lGT~~al~~a~~--~i~~~~~~~~~~flV~~gD~i~--~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~   92 (353)
                      .+.|||+.++....  .+++.....-+++.+.+.|++.  ..| ..++.+|.++++++++.+.+...+ ..++|++....
T Consensus       223 ~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~-~e~~Gvl~~~~  300 (486)
T 2yqc_A          223 SPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVAD-PIFIGFAIAKKFDLATKVVRKRDA-NESVGLIVLDQ  300 (486)
T ss_dssp             EECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTC-HHHHHHHHHHTCSEEEEEEECCST-TCCCCEEEEET
T ss_pred             CcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccC-HHHHHHHHHcCCCEEEEEEEcCCC-CCceeEEEEEe
Confidence            58899998865532  1221112356789999999854  345 468889999999999988775331 35788877531


Q ss_pred             -CC--CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHh
Q 018622           93 -MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW  150 (353)
Q Consensus        93 -~g--~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~  150 (353)
                       +|  +|+.|.|+|.......   +.+    .++.  ...+..|+++|+|+.++|+..+++
T Consensus       301 ~dg~~~vvEy~E~~~~~~~~~---~~~----~~~~--~~~~~~Ni~~~~~~l~~L~~~l~~  352 (486)
T 2yqc_A          301 DNQKPCVIEYSEISQELANKK---DPQ----DSSK--LFLRAANIVNHYYSVEFLNKMIPK  352 (486)
T ss_dssp             TTTEEEEECGGGSCHHHHHCE---ETT----EEEE--ESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred             cCCCEEEEEEecCCHHHhhcc---ccc----cccc--ccccceeEEEEEEeHHHHHHHHHh
Confidence             45  5777778875321100   000    0000  013678999999999999875554

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=95.21  E-value=0.033  Score=47.13  Aligned_cols=38  Identities=8%  Similarity=-0.206  Sum_probs=30.4

Q ss_pred             cccHHHHHHHHHHhhhhccCCCCeEEEEeCCe-E-EecCHHHHHHH
Q 018622           19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDH-L-YRMDYMDFIQS   62 (353)
Q Consensus        19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~-i-~~~dl~~~~~~   62 (353)
                      .|++++|+.+..+++      .+.+++++||. + ....++.+++.
T Consensus        77 ~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~  116 (201)
T 1e5k_A           77 PGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNHQ  116 (201)
T ss_dssp             CSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             CCHHHHHHHHHHhCC------CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence            689999999998875      37899999999 3 44457888765

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=94.88  E-value=0.02  Score=48.01  Aligned_cols=54  Identities=11%  Similarity=0.055  Sum_probs=37.3

Q ss_pred             ccccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHH-----CCCcEEEEEEEeC
Q 018622           18 FQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVD-----RDADITISCAAVG   78 (353)
Q Consensus        18 ~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~-----~~a~~tll~~~~~   78 (353)
                      ..|++++|+.+...+.       +.|+++.||.  +...+++++++.|.+     .+.+..+++.+..
T Consensus        77 ~~g~~~si~~al~~~~-------~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~  137 (196)
T 3rsb_A           77 GKGYIEDLNECIGYFS-------EPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKE  137 (196)
T ss_dssp             ----CCCCCTTTTTCS-------SCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEETT
T ss_pred             CCCcHHHHHHHHHhCC-------CCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEcc
Confidence            4577778888776652       7999999999  456789999999987     6666666666543

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=90.51  E-value=0.084  Score=49.25  Aligned_cols=123  Identities=11%  Similarity=0.021  Sum_probs=70.9

Q ss_pred             ccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622           20 GTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA   97 (353)
Q Consensus        20 GT~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~   97 (353)
                      |..++++.+...+.      .+.++++.||.-  ....++++++.+.+.+  ..+.+.+..+  ...+          + 
T Consensus        75 g~~~sv~~aL~~l~------~d~vlv~~~D~Pli~~~~i~~li~~~~~~~--a~i~~~~~~d--~vk~----------v-  133 (371)
T 1w55_A           75 TRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKAD--CITPALKVAD--TTLF----------D-  133 (371)
T ss_dssp             SHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGCS--EEEEEECCCS--CEEE----------T-
T ss_pred             ChHHHHHHHHHhcC------CCeEEEEeCCcccCCHHHHHHHHHHHHhcC--CEEEEEEeec--Ceee----------e-
Confidence            46689998887664      378999999983  3456888988876553  4444444332  1111          0 


Q ss_pred             EEEeCCCccccccccccccccCCCccccccCCcccce-eeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhh--cCcEEE
Q 018622           98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM-GVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIM--EHDVQA  174 (353)
Q Consensus        98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~--~~~i~~  174 (353)
                        .+.+..                       ..++.. .-++|+++.|..+++..  . .  .++.. .+++  ..++..
T Consensus       134 --~~t~~r-----------------------~~l~~~~~P~~f~~~~l~~~~~~~--~-~--~td~~-~ll~~~g~~V~~  182 (371)
T 1w55_A          134 --NEALQR-----------------------EKIKLIQTPQISKTKLLKKALDQN--L-E--FTDDS-TAIAAMGGKIWF  182 (371)
T ss_dssp             --TEEECG-----------------------GGCCEECSCEEEEHHHHHHHTSSC--C-C--CSSHH-HHHHTTTCCEEE
T ss_pred             --eeecCc-----------------------cceeecCCcceecHHHHHHHHHhc--c-c--ccCHH-HHHHhCCCcEEE
Confidence              011110                       011111 12568888776554321  1 0  11211 1222  357787


Q ss_pred             EEecceEeEcCCHHHHHHHH
Q 018622          175 YIFRDYWEDIGTIKSFYEAN  194 (353)
Q Consensus       175 ~~~~g~w~dIgtp~~y~~a~  194 (353)
                      ++.++.|+||+||++|..|+
T Consensus       183 v~~~~~~~dIdTpeDL~~Ae  202 (371)
T 1w55_A          183 VEGEENARKLTFKEDLKKLD  202 (371)
T ss_dssp             EECCGGGCCCCSGGGGGGSC
T ss_pred             EECCccccCCCCHHHHHHHH
Confidence            88778899999999998775

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=88.56  E-value=3.8  Score=34.47  Aligned_cols=46  Identities=13%  Similarity=0.090  Sum_probs=33.3

Q ss_pred             cccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE-Ee-cCHHHHHHHHHHCCCcEEE
Q 018622           19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSHVDRDADITI   72 (353)
Q Consensus        19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i-~~-~dl~~~~~~h~~~~a~~tl   72 (353)
                      .|..++|+.+...+ .      +.+ ++.||.- .+ ..++.+++.+.+.++++.+
T Consensus        70 ~G~~~si~~gl~~~-~------~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~  117 (208)
T 3ngw_A           70 VGSIAGIHAALRHF-G------SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI  117 (208)
T ss_dssp             CSHHHHHHHHHHHH-S------SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CChHHHHHHHHHHc-C------CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence            46779999998877 3      678 9999983 33 4578888877665665544

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}

Probab=83.04  E-value=23  Score=33.86  Aligned_cols=166  Identities=11%  Similarity=0.029  Sum_probs=90.9

Q ss_pred             cccccHHHHHHHH--HHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEEC---
Q 018622           17 WFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID---   91 (353)
Q Consensus        17 ~~lGT~~al~~a~--~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d---   91 (353)
                      .+-|.|+-.....  ..+++.....-+++.+.+.|++...-=-.++-++.++++++.+-+.+-..+ ...-|++...   
T Consensus       187 ~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~~lG~~~~~~~d~~~kvv~Kt~~-dekgG~l~~~~~~  265 (484)
T 3gue_A          187 VPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRLLDYMHEKQLGFLMEVCRRTES-DKKGGHLAYKDVI  265 (484)
T ss_dssp             ECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHHHHHHHHHTTCSEEEEEEECCTT-CCSSEEEEEEC--
T ss_pred             ccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHHHHHHHHhcCCCEEEEEEECCCC-CCceeEEEEEccc
Confidence            3667776433321  233332234668999999999654322567888899999988866654431 2345644432   


Q ss_pred             ------CCCCe--eEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhC--CCC------
Q 018622           92 ------NMGRI--AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY--PTS------  155 (353)
Q Consensus        92 ------~~g~V--~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~--~~~------  155 (353)
                            .+|+.  +.+.|-|.... ......            ....+.|++-.+++-..+..++++..  ...      
T Consensus       266 ~~~~~~~dG~~~vvEyseip~e~~-~~f~~~------------~g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~  332 (484)
T 3gue_A          266 DETTGQTRRRFVLRESAQCPKEDE-DSFQNI------------AKHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNP  332 (484)
T ss_dssp             ------CCCEEEEEEGGGSCGGGH-HHHTCT------------TTSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred             cccccCCCCCEEEEEeccCCHHHH-hhhcCC------------CCceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEecc
Confidence                  24654  33333332211 000000            01235588889999888877777631  000      


Q ss_pred             ----------------CchhhhhhhhhhhcCcEEEEEec-ceEeEcCCHHHHHHHHHhhcc
Q 018622          156 ----------------NDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTK  199 (353)
Q Consensus       156 ----------------~~~~~d~l~~l~~~~~i~~~~~~-g~w~dIgtp~~y~~a~~~ll~  199 (353)
                                      +.+..|+++.+   .+..++.+. ..+.-+-+..+++.+..++..
T Consensus       333 K~id~~k~~~~~~iqlE~~~~d~~~~~---~~~~~ieV~R~rF~PvKn~sdLl~~~Sdly~  390 (484)
T 3gue_A          333 KTVNPQDSQSTKVYQLEVAMGAAISLF---DRSEAVVVPRERFAPVKTCSDLLALRSDAYQ  390 (484)
T ss_dssp             EESSTTCTTSCEEEEEECCGGGGGTTS---SSEEEEECCGGGCCCCSSHHHHHHHHSTTEE
T ss_pred             ceecCCCCCCCCEeehHHHHHHHHHhC---CccEEEEEChhhccccccchHHHHHhhhcee
Confidence                            00111222222   245555443 467788999999888777654

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A

Probab=82.05  E-value=12  Score=36.17  Aligned_cols=255  Identities=13%  Similarity=0.131  Sum_probs=122.3

Q ss_pred             cccccHHHHHHH--HHHhhhhccCCCCeEEEEeCCeEE-ecCHHHHHHHHHHC----CCcEEEEEEEeCCCCCCcceEEE
Q 018622           17 WFQGTADAVRQF--TWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDR----DADITISCAAVGESRASDYGLVK   89 (353)
Q Consensus        17 ~~lGT~~al~~a--~~~i~~~~~~~~~~flV~~gD~i~-~~dl~~~~~~h~~~----~a~~tll~~~~~~~~~~~~g~v~   89 (353)
                      .+-|.|+-....  ...+++.....-+++.+.+.|++. ..|. .++.++.++    ++++.+-+.+...+ ...-|++.
T Consensus       239 ~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp-~~Lg~~~~~~~~~~~d~~~kVv~Kt~~-dek~Gvl~  316 (528)
T 3r3i_A          239 YPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDL-YILNHLMNPPNGKRCEFVMEVTNKTRA-DVKGGTLT  316 (528)
T ss_dssp             BCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCH-HHHHHHSSCSSSCCCSEEEEECCCCTT-CCSSCEEE
T ss_pred             CcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccCH-HHHHHHHhcccccCCcEEEEEeEcccc-CCcccEEE
Confidence            466776543322  123333223466899999999964 4554 466677666    78877644432221 23346555


Q ss_pred             ECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCC--------c----
Q 018622           90 IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN--------D----  157 (353)
Q Consensus        90 ~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~--------~----  157 (353)
                      . .+|+. .+.|-.+.+... .  + +    ....  ....+.|+....|+-+.|++++++......        +    
T Consensus       317 ~-~dGk~-~vvEyseip~e~-~--~-~----~~g~--~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~  384 (528)
T 3r3i_A          317 Q-YEGKL-RLVEIAQVPKAH-V--D-E----FKSV--SKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLN  384 (528)
T ss_dssp             C-SSSSC-EEECTTSSCGGG-T--T-T----SSCS--SSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSC
T ss_pred             E-ECCeE-EEEEecCCChhH-h--h-c----cCCc--ccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCCC
Confidence            4 35654 234433222110 0  0 0    0000  123568999999999999988875321000        0    


Q ss_pred             ------hhhhhhhhhhhcCcEEEEEec-ceEeEcCCHHHHHHHHHhhccCCC-cccccCCCC--ceecCCCCCCCeEEec
Q 018622          158 ------FGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKESP-AFHFYDPKT--PFYTSPRFLPPTKIDN  227 (353)
Q Consensus       158 ------~~~d~l~~l~~~~~i~~~~~~-g~w~dIgtp~~y~~a~~~ll~~~~-~~~~~~~~~--~i~~~~~i~~~~~i~~  227 (353)
                            +..++++.+   .+..++.+. ..+.-+-+..+++....++..-.. .+. ..|..  +..|.+..++.  +  
T Consensus       385 viqlEt~igd~i~~f---~~~~~i~VpR~rF~PvKn~sdLll~~Sdly~l~~g~l~-~~~~r~~~~~P~v~L~~~--~--  456 (528)
T 3r3i_A          385 VIQLETAVGAAIKSF---ENSLGINVPRSRFLPVKTTSDLLLVMSNLYSLNAGSLT-MSEKREFPTVPLVKLGSS--F--  456 (528)
T ss_dssp             EEEEEBCSTTCSTTS---SSCCCEECCGGGCCBCCSHHHHHHHHSTTSEEETTEEE-CCSSCSSCCCCEEEECTT--S--
T ss_pred             EEEeHHHHHHHHHhc---cCcEEEEEehHHcccccchHHHHHHhcceeEeeCCeEE-ecccccCCCCCEEEeCcc--c--
Confidence                  011111111   223334332 348889999999988776654211 111 01110  00111111111  0  


Q ss_pred             eeeec--eEECC-CcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEe
Q 018622          228 CRIKD--AIISH-GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCII  304 (353)
Q Consensus       228 ~~i~~--~~ig~-~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~ii  304 (353)
                      ..|.+  ..+.. -..+   ...+-.|--++..|+++++.+.|++..+             . ..+..|.+|+.+.+.+|
T Consensus       457 ~~v~~f~~rf~~iP~l~---~~~~LtV~Gdv~fg~~v~l~G~v~i~~~-------------~-g~~~~ip~g~~len~~v  519 (528)
T 3r3i_A          457 TKVQDYLRRFESIPDML---ELDHLTVSGDVTFGKNVSLKGTVIIIAN-------------H-GDRIDIPPGAVLENKIV  519 (528)
T ss_dssp             CSHHHHHHHCSSCCEEE---EEEEEEEESEEECCTTCEEEEEEEEECC-------------T-TCEEECCTTCEEEEEEE
T ss_pred             CcHHHHHHhCCCCCCcc---cCCEEEEecceEECCCcEEEEEEEEEcC-------------C-CCceecCCCCEEeccEE
Confidence            11110  01110 0111   1123345555888888888888887421             0 01267888888888888


Q ss_pred             CCCCEE
Q 018622          305 DKNVKI  310 (353)
Q Consensus       305 g~~~~I  310 (353)
                      -.+..|
T Consensus       520 ~g~~~~  525 (528)
T 3r3i_A          520 SGNLRI  525 (528)
T ss_dssp             C-----
T ss_pred             eccccc
Confidence            766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	353
d1yp2a2	307	c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr	6e-42
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	7e-34
d1fxoa_	292	c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa	1e-13
d1lvwa_	295	c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri	5e-09
d1mc3a_	291	c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}	5e-08
d1tzfa_	259	c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf	2e-05

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  146 bits (368), Expect = 6e-42
 Identities = 110/205 (53%), Positives = 145/205 (70%), Gaps = 5/205 (2%)

Query: 16  NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 75
           +WFQGTADAVRQ+ W+F   +   +    IL GDHLYRMDY  FIQ+H + DADIT++  
Sbjct: 106 DWFQGTADAVRQYLWLF---EEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAAL 162

Query: 76  AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 135
            + E RA+ +GL+KID  GRI +FAEKP G  L+AM+VDT++LG   + A++ P++ASMG
Sbjct: 163 PMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMG 222

Query: 136 VYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 194
           +YV  KDV+  LLR ++P +NDFGSE+IP A      VQAY++  YWEDIGTI++FY AN
Sbjct: 223 IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNAN 282

Query: 195 MALTK-ESPAFHFYDPKTPFYTSPR 218
           + +TK   P F FYD   P YT PR
Sbjct: 283 LGITKKPVPDFSFYDRSAPIYTQPR 307

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  119 bits (300), Expect = 7e-34
 Identities = 59/135 (43%), Positives = 97/135 (71%)

Query: 219 FLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTES 278
           +LPP+K+ +  + D++I  GC ++ C + HS+VG RS +  G  ++D++++GADYY+T++
Sbjct: 1   YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDA 60

Query: 279 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI 338
           +   L A+G VPIG+G+N  I+  IIDKN +IG +V I+NKD+VQEA R   G++I+SGI
Sbjct: 61  DRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI 120

Query: 339 TIIMEKATIEDGMVI 353
             +++ A I  G++I
Sbjct: 121 VTVIKDALIPSGIII 135

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 68.3 bits (167), Expect = 1e-13
 Identities = 35/184 (19%), Positives = 56/184 (30%), Gaps = 33/184 (17%)

Query: 16  NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 75
               G A A              N  +  +L  +  Y  D+ + + S   R    ++   
Sbjct: 82  PSPDGLAQAFLIGES-----FIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAY 136

Query: 76  AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 135
            V       YG+V+ D  G+     EKP                       K  Y A  G
Sbjct: 137 HV--LDPERYGVVEFDQGGKAISLEEKPLEP--------------------KSNY-AVTG 173

Query: 136 VYVFKKDVLFKLLRWRYPTS--NDFGSEIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFY 191
           +Y + + V   + R   P+       +++  A +    +   I      W D GT  S  
Sbjct: 174 LYFYDQQV-VDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLL 232

Query: 192 EANM 195
           EA  
Sbjct: 233 EAGQ 236

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 54.6 bits (131), Expect = 5e-09
 Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 41/188 (21%)

Query: 16  NWFQGTADAVRQFTWVFEDAKN--RNIENVAILCGDHLYRMDYMDFIQSHVDRDADITIS 73
              +G ADA           K+   + +   +L  +  Y   + + ++     +    I 
Sbjct: 84  EEPRGIADAFIV-------GKDFIGDSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIF 136

Query: 74  CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS 133
              V       +G+V+ D+ GR+    EK                        K  Y   
Sbjct: 137 GYYV--RDPRPFGVVEFDSEGRVISIEEK--------------------PSRPKSNY-VV 173

Query: 134 MGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEH------DVQAYIFRDYWEDIGTI 187
            G+Y +   V+    R      +D G   I +   E+       V+       W D GT 
Sbjct: 174 PGLYFYDNQVVEIARRIE---PSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTH 230

Query: 188 KSFYEANM 195
               EA+ 
Sbjct: 231 DGLLEASS 238

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 37/181 (20%)

Query: 20  GTADAVRQFTWVFEDAKN--RNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 77
           G A A           +       +  +L  +  +   +   ++    R    T+    V
Sbjct: 86  GLAQAFII-------GETFLNGEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV 138

Query: 78  GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 137
                  +G+V+ D+  R     EK                     +  K  + A  G+Y
Sbjct: 139 --MDPERFGVVEFDDNFRAISLEEK--------------------PKQPKSNW-AVTGLY 175

Query: 138 VFKKDVLFKLLRWRYPTSN--DFGSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEA 193
            +   V  +  +   P+       + I    +   ++   +      W D GT  S  EA
Sbjct: 176 FYDSKV-VEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEA 234

Query: 194 N 194
           +
Sbjct: 235 S 235

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 7/69 (10%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 126 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 185
           +    + + G +V    V+  +          +  E +     + ++ A+    +W+ + 
Sbjct: 181 KGDGAMINGGFFVLNPSVIDLIDNDAT----TWEQEPLMTLAQQGELMAFEHPGFWQPMD 236

Query: 186 TIKSFYEAN 194
           T++      
Sbjct: 237 TLRDKVYLE 245

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	353
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	99.93
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	99.91
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	99.88
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.87
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	99.75
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	99.68
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.54
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.45
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.45
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	99.44
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.31
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.3
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.23
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.23
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.22
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.21
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.2
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.2
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.14
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.12
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	99.12
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.12
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.07
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.06
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.06
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.02
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	98.97
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	98.97
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	98.95
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	98.87
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	98.82
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	98.76
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.63
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	98.63
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	98.53
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	98.53
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.44
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	98.39
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.37
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.21
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	98.12
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.07
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	97.46
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	96.47
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	96.39
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	96.26
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	94.21
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	91.73
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	91.57
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	91.4
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	86.99

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.93  E-value=1.8e-25  Score=204.41  Aligned_cols=210  Identities=55%  Similarity=1.009  Sum_probs=169.0

Q ss_pred             eecCcccCCCCCCccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCC
Q 018622            3 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA   82 (353)
Q Consensus         3 ~~~~~~~~~~~~~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~   82 (353)
                      ++++...+  .+..+.+||++|+++++.++++   ...++|+|++||++++.|+..+++.|+.+++++++++...+.++.
T Consensus        95 ~~~~~~~~--~~~~~~~g~~~ai~~~~~~i~~---~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (307)
T d1yp2a2          95 VLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRA  169 (307)
T ss_dssp             EEESCSST--TSCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHH
T ss_pred             eeceeeec--cccccccchhHHHHHhHHhhhc---cccceEEEecCcceeccchhhhhhhhhhccccceEEEEecccccc
Confidence            34455552  2457789999999999999984   345789999999999999999999999999999998887765556


Q ss_pred             CcceEEEECCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhh
Q 018622           83 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI  162 (353)
Q Consensus        83 ~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~  162 (353)
                      .+||++.+|++|+|..|.|||..+.......+...+............++++|+|+|++++|..+++...+...++..++
T Consensus       170 ~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~  249 (307)
T d1yp2a2         170 TAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEV  249 (307)
T ss_dssp             TTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTH
T ss_pred             cccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccchHHHH
Confidence            78999999999999999999986654433344433333333323345688999999999999888776656666788899


Q ss_pred             hhhhhhc-CcEEEEEecceEeEcCCHHHHHHHHHhhccCCC-cccccCCCCceecCC
Q 018622          163 IPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESP-AFHFYDPKTPFYTSP  217 (353)
Q Consensus       163 l~~l~~~-~~i~~~~~~g~w~dIgtp~~y~~a~~~ll~~~~-~~~~~~~~~~i~~~~  217 (353)
                      ++.++++ .++.+|+++|+|.|+|||++|++|+++++.+.. ...+++++++|++.+
T Consensus       250 i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~~~~~~~~~~~~~i~~~~  306 (307)
T d1yp2a2         250 IPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQP  306 (307)
T ss_dssp             HHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCC
T ss_pred             HHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCCCchhhccCCCCCccCCC
Confidence            9998877 589999999999999999999999999998763 446778899999875

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=4.8e-24  Score=192.76  Aligned_cols=155  Identities=21%  Similarity=0.269  Sum_probs=133.6

Q ss_pred             CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      |++++|||+||++|++++++     ++.|+++++|++++.|+.+++++|.++++.+|+++.++++  +++||++.+|+++
T Consensus        81 q~~~~Gta~ai~~a~~~i~~-----~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~~--p~~yGV~~~d~~~  153 (292)
T d1fxoa_          81 QPSPDGLAQAFLIGESFIGN-----DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGG  153 (292)
T ss_dssp             CSSCCCGGGHHHHTHHHHTT-----SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSC--GGGSEEEEECTTS
T ss_pred             CCCCCcHHHHHHhhhhhcCC-----CceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECCC--HHHCeEEEEcCCC
Confidence            47889999999999999984     3556888889999999999999999999999999999877  7899999999999


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCC--CchhhhhhhhhhhcCcE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--NDFGSEIIPAAIMEHDV  172 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~--~~~~~d~l~~l~~~~~i  172 (353)
                      ++++|.|||..+.                     ++++++|+|+|++++++ ++++..+..  ....+|+++.+++++++
T Consensus       154 ki~~~~EKP~~p~---------------------Snla~~G~Y~f~~~~~~-~~~~l~~s~rgE~eitD~~~~~l~~~~~  211 (292)
T d1fxoa_         154 KAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVD-IARDLKPSPRGELEITDVNRAYLERGQL  211 (292)
T ss_dssp             CEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHH-HHHHCCCCTTSSCCHHHHHHHHHHTTCE
T ss_pred             CEeEEEECCCCCC---------------------CCcEEEEEEEEChHHHH-HHHhCCCCCCCchhhHHHHHHHHHcCCe
Confidence            9999999998653                     68999999999999997 566655442  23467999999999998


Q ss_pred             EEEEec--ceEeEcCCHHHHHHHHHhhc
Q 018622          173 QAYIFR--DYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       173 ~~~~~~--g~w~dIgtp~~y~~a~~~ll  198 (353)
                      .++.+.  .+|+|+||+++|++|++.+.
T Consensus       212 ~~~~~~~~~~W~D~Gt~~~l~~a~~~v~  239 (292)
T d1fxoa_         212 SVEIMGRGYAWLDTGTHDSLLEAGQFIA  239 (292)
T ss_dssp             EEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence            888774  36999999999999997654

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.7e-22  Score=182.15  Aligned_cols=154  Identities=18%  Similarity=0.222  Sum_probs=129.0

Q ss_pred             CccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           15 KNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        15 ~~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      |+.++||||||+.|++++++     ++.|+|+++|++++.++.+++++|.++++++|+++.++++  +++||++.+|++|
T Consensus        81 Q~~plGta~Ai~~a~~fi~~-----~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~d--P~~yGVve~d~~g  153 (291)
T d1mc3a_          81 QPSPDGLAQAFIIGETFLNG-----EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD--PERFGVVEFDDNF  153 (291)
T ss_dssp             CSSCCCSTHHHHHTHHHHTT-----SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC--CSSSBBCEEETTE
T ss_pred             CCCCCchHHHHHHHHHHhCC-----CCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECCC--cccCCCceeccCc
Confidence            46789999999999999983     2345667777889999999999999999999999999987  7899999999999


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCC-c-hhhhhhhhhhhcCcE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN-D-FGSEIIPAAIMEHDV  172 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~-~-~~~d~l~~l~~~~~i  172 (353)
                      +|..|.|||..+.                     ++++++|+|+|++++++ ++++..++.+ + -.+|++..+++++++
T Consensus       154 ~i~~i~EKP~~p~---------------------Sn~a~~GiY~f~~~v~~-~~~~lk~s~rgE~EItdl~~~~l~~~~~  211 (291)
T d1mc3a_         154 RAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVE-YAKQVKPSERGELEITSINQMYLEAGNL  211 (291)
T ss_dssp             EEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHH-HHHSCCCCSSSSCCHHHHHHHHHHTTCE
T ss_pred             ceeEEEECCCCCC---------------------CCeEEEEEEEeChHHHH-HHhcCCCCCCCceeehHHHHHHHHcCCc
Confidence            9999999998653                     68999999999999997 4565544322 2 256889999988888


Q ss_pred             EEEEec-c-eEeEcCCHHHHHHHHHhh
Q 018622          173 QAYIFR-D-YWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       173 ~~~~~~-g-~w~dIgtp~~y~~a~~~l  197 (353)
                      ..+.+. + +|+|+||+++|++|+..+
T Consensus       212 ~~~~~~~g~~W~D~Gt~~~l~~a~~~v  238 (291)
T d1mc3a_         212 TVELLGRGFAWLDTGTHDSLIEASTFV  238 (291)
T ss_dssp             EEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred             eEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence            777663 3 699999999999999754

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.87  E-value=1.8e-21  Score=156.42  Aligned_cols=131  Identities=41%  Similarity=0.827  Sum_probs=119.5

Q ss_pred             CCCeEEeceeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHH---HhhcCCCcceEeCCC
Q 018622          220 LPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIA---SLLAEGKVPIGVGRN  296 (353)
Q Consensus       220 ~~~~~i~~~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~ig~~  296 (353)
                      .||+++.++.+++++|+++|.|+++.+.+|+||++|+||+++.|++++++++..+....+..   +..++.   +.||++
T Consensus         2 lPp~~i~~~~i~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~---v~Ig~~   78 (135)
T d1yp2a1           2 LPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVP---IGIGKN   78 (135)
T ss_dssp             CCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCC---SEECTT
T ss_pred             CCCcccCCCEEEeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCC---CEECcc
Confidence            58999988999999999999999888999999999999999999999999998887777662   333445   899999


Q ss_pred             eEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          297 TKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       297 ~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      |.|.+++|+++|+||+++++.+...+.+.++++++.+|.++.++||++++|++|++|
T Consensus        79 ~~I~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI  135 (135)
T d1yp2a1          79 CHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII  135 (135)
T ss_dssp             CEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred             eEeccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence            999999999999999999999999898989999999999998899999999999987

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.75  E-value=1.3e-17  Score=151.10  Aligned_cols=153  Identities=19%  Similarity=0.235  Sum_probs=125.0

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      +.++|||+||+.|+.++++     ++.++++++|++++.++..+++.|.+++.++|+++.++++  +++||++.++++++
T Consensus        84 ~~~~gta~Al~~a~~~l~~-----~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~--~~~yG~i~~~~~~~  156 (295)
T d1lvwa_          84 EEPRGIADAFIVGKDFIGD-----SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD--PRPFGVVEFDSEGR  156 (295)
T ss_dssp             SSCCCGGGHHHHTHHHHTT-----SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSC--CTTSEEEEECTTSB
T ss_pred             CCCCCHHHHHHHHHHHcCC-----CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcCC--CccccEEEECCCCc
Confidence            6678999999999999973     3568888999999999999999999999999999998876  67899999998999


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-C-CchhhhhhhhhhhcCcE-
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-S-NDFGSEIIPAAIMEHDV-  172 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-~-~~~~~d~l~~l~~~~~i-  172 (353)
                      |..|.|||..+.                     ++++++|+|+|++++|. ++.+.... . .....++++.++..... 
T Consensus       157 v~~~~EKp~~~~---------------------s~~~~~Giy~~n~~if~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  214 (295)
T d1lvwa_         157 VISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVE-IARRIEPSDRGELEITSVNEEYLRMGKLR  214 (295)
T ss_dssp             EEEEEESCSSCS---------------------CSEECCSEEEECTTHHH-HHHHCCCCTTSCCCHHHHHHHHHHTTCEE
T ss_pred             EEEEeecccCcc---------------------cceeecceEEECHHHHH-HHHhcCCCcCCCeeccchHHHHHHhCCCe
Confidence            999999998543                     46899999999999996 44443322 1 22345778777777654 


Q ss_pred             -EEEEecceEeEcCCHHHHHHHHHhh
Q 018622          173 -QAYIFRDYWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       173 -~~~~~~g~w~dIgtp~~y~~a~~~l  197 (353)
                       ..+..+.+|.|+|+|++|.+++..+
T Consensus       215 ~~~~~~~~~w~Digt~~~l~~~s~~i  240 (295)
T d1lvwa_         215 VELMGRGMAWLDTGTHDGLLEASSFI  240 (295)
T ss_dssp             EEEECTTCEECCCSSHHHHHHHHHHH
T ss_pred             EEEcCCCcEEeCCCChHHHHHHHHHH
Confidence             4445567999999999999998765

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=3.4e-17  Score=146.26  Aligned_cols=160  Identities=20%  Similarity=0.248  Sum_probs=112.6

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHH--HHHHH---HHHCCCcEEEEEEEeCCCCCCcceEEEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYM--DFIQS---HVDRDADITISCAAVGESRASDYGLVKI   90 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~--~~~~~---h~~~~a~~tll~~~~~~~~~~~~g~v~~   90 (353)
                      +..+|||+|+..+...+..   .+++.|+|++||++++.++.  ..+..   |.++++.+|+...+..+  +++||++.+
T Consensus        79 ~~~~~t~~a~~~~~~~~~~---~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~yG~i~~  153 (268)
T d2cu2a2          79 PLGRDTAGAVLLGVAEALK---EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRP--ETEYGYIRL  153 (268)
T ss_dssp             SSCCHHHHHHHHHHHHHHH---HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSC--CSSSCEEEE
T ss_pred             eecCCcccchhhHHHHHhc---cCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeecccccc--ccccceEEe
Confidence            4467899999988776642   25688999999999988753  33333   33556667777776655  689999998


Q ss_pred             CCCC----CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCC---------c
Q 018622           91 DNMG----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN---------D  157 (353)
Q Consensus        91 d~~g----~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~---------~  157 (353)
                      ++++    +|.+|.|||+...++++.-              ..+++|+|+|+|++++|...+++..+...         .
T Consensus       154 ~~~~~~~~~v~~f~EKp~~~~~~~~~~--------------~~~~~N~Giy~f~~~~l~~~~~~~~p~i~~~~~~~~~~~  219 (268)
T d2cu2a2         154 GPREGAWYRGEGFVEKPSYAEALEYIR--------------KGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGA  219 (268)
T ss_dssp             EEEETTEEEEEEEECCCCHHHHHHHHH--------------TTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTC
T ss_pred             ccccccchhhheeecccchhhhhhhhc--------------cCcccchhhhhcchHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence            7543    7999999998765432211              23689999999999988666555443111         1


Q ss_pred             hhhhhhhhh---------h-hcCcEEEEEecceEeEcCCHHHHHHHH
Q 018622          158 FGSEIIPAA---------I-MEHDVQAYIFRDYWEDIGTIKSFYEAN  194 (353)
Q Consensus       158 ~~~d~l~~l---------~-~~~~i~~~~~~g~w~dIgtp~~y~~a~  194 (353)
                      ...+.++.+         + +..++.+++++++|.|+||++++++..
T Consensus       220 ~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~  266 (268)
T d2cu2a2         220 SLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF  266 (268)
T ss_dssp             CHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred             hHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence            122333322         2 236899999999999999999999765

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.54  E-value=1.2e-14  Score=129.02  Aligned_cols=63  Identities=13%  Similarity=0.145  Sum_probs=51.3

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEE-----ecCCcEECCCccC
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-----IMEKATIEDGMVI  353 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~v-----ig~~~~i~~g~vv  353 (353)
                      |+||+++.+. ++.|+++|.||+++.+.+...+...+++++++.|+.++.+     ||+++.|+++|+|
T Consensus       109 T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~V  177 (262)
T d2jf2a1         109 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGV  177 (262)
T ss_dssp             EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEE
T ss_pred             eEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeehhceeeccceE
Confidence            6788888887 6888999999999998888888778888888888777554     7888888888764

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.45  E-value=2.2e-13  Score=120.56  Aligned_cols=145  Identities=14%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             cCCCCceecCCCCCCCeEEec-eeee-ceEECCCcEEC-ceEE-eeeEEcCCcEECCCCEEece------------EEEC
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDT------------VMLG  270 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~-~~~v-~~~~ig~~~~ig~~~~i~~~------------v~~~  270 (353)
                      ++|++.|.+++.|++++.|++ +.|. ++.|+++|+|+ ++.| .++.||++|.|.++|+|+..            +.++
T Consensus         3 Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig   82 (259)
T d1j2za_           3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG   82 (259)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred             CCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEec
Confidence            345555555555555555543 4442 45555555555 3333 24555555555555555321            2222


Q ss_pred             Ccc-ccchhHHH-HhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEcc------CCCcccccCCCCceEEccCeEEe
Q 018622          271 ADY-YQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN------KDDVQEADRPELGFYIRSGITII  341 (353)
Q Consensus       271 ~~~-~~~~~~~~-~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~------~~~~~~~~~~~~~~~i~~~~~vi  341 (353)
                      .+. +....... ...+. .-.+.||+++.+. ++.+++++.||.++.+.+      ...+++.+++|.++.|..++ .|
T Consensus        83 ~~~~i~~~~~i~~~~~~~-~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv-~I  160 (259)
T d1j2za_          83 EDNLIREFCMINPGTEGG-IKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFV-RI  160 (259)
T ss_dssp             SSCEECTTCEECCCCTTT-TSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTC-EE
T ss_pred             cccccccccccccccccc-cccccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeeccc-Ee
Confidence            111 11111110 00000 0115666666665 455555555555555444      44455555555555565553 46


Q ss_pred             cCCcEECCCccC
Q 018622          342 MEKATIEDGMVI  353 (353)
Q Consensus       342 g~~~~i~~g~vv  353 (353)
                      |++++|+++|+|
T Consensus       161 G~~a~IgagSvV  172 (259)
T d1j2za_         161 AKGCMIAGKSAL  172 (259)
T ss_dssp             CTTCEECTTCEE
T ss_pred             ccceeeeeeeee
Confidence            999999988875

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.45  E-value=3.3e-13  Score=115.56  Aligned_cols=133  Identities=16%  Similarity=0.224  Sum_probs=86.0

Q ss_pred             CceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEE-----eeeEEcCCcEECCCCEEeceEEECCccccchh------
Q 018622          211 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYYQTES------  278 (353)
Q Consensus       211 ~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v-----~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~------  278 (353)
                      ..|++++.|+|.|.|.+    ++.||++|+|+ ++.|     .+..||++|.|+++|+|...............      
T Consensus        23 p~I~~~a~I~p~A~i~g----~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~   98 (210)
T d1qrea_          23 PVIDPTAYIDPQASVIG----EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVD   98 (210)
T ss_dssp             CEECTTCEECTTCEEEE----SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEET
T ss_pred             CccCCCCEECCCCEEec----ceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccccc
Confidence            45777777777777654    44555555555 3333     25788899999988888654333221110000      


Q ss_pred             --HHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          279 --EIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       279 --~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                        ...+.++++   +.||+++.|. +|.||+++.||+++++.+. .+++.+.|+.++++.+  .+|++++.|++|+++
T Consensus        99 ~~~~~~~IG~~---v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~-~IG~~~vIg~~svv~g--~~i~~g~~I~~g~~v  170 (210)
T d1qrea_          99 GKEYAVYIGNN---VSLAHQSQVHGPAAVGDDTFIGMQAFVFKS-KVGNNCVLEPRSAAIG--VTIPDGRYIPAGMVV  170 (210)
T ss_dssp             TEEESEEECTT---CEECTTCEEEEEEEECTTCEECTTCEEEEE-EECTTCEECTTCEEES--CEECTTBEECTTCEE
T ss_pred             ccccceeeccc---cccccccccccCCcccCCcEeeCCcccccc-ccccCcEEecCcEecC--cEeCCCcEECCCcEE
Confidence              002344555   7888888887 7999999999999988865 4666666666666643  356888888888764

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.44  E-value=6.4e-13  Score=116.40  Aligned_cols=153  Identities=16%  Similarity=0.255  Sum_probs=120.7

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      ...+++++++..+.+.+.     .+++|+++++|.+++.++.++++.|.......+......    .++++.+... ..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~  172 (259)
T d1tzfa_         103 GDSSMTGGRLKRVAEYVK-----DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFP----PGRFGALDIQ-AGQ  172 (259)
T ss_dssp             CSSCCHHHHHHHTGGGTT-----TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEECC----CCCSEEEEEE-TTE
T ss_pred             cccccccchhhhhhhhcc-----CCCceEEeccccccccchhhhhhhhcccccceeeccccc----cccCCceecc-cce
Confidence            457789999999987776     357899999999999999999999999888877766533    3567766653 456


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEE
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAY  175 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~  175 (353)
                      +..+.+.+..                      .+.+.++|+|++++++++. ++.   ...++..++++.+++++++.+|
T Consensus       173 i~~~~~~~~~----------------------~~~~~~~G~y~~~~~~~~~-i~~---~~~~~~~~~l~~l~~~~~v~~~  226 (259)
T d1tzfa_         173 VRSFQEKPKG----------------------DGAMINGGFFVLNPSVIDL-IDN---DATTWEQEPLMTLAQQGELMAF  226 (259)
T ss_dssp             EEEEEESCSC----------------------CSCCEECCCEEECGGGGGG-CCS---TTCCTTTHHHHHHHHTTCEEEE
T ss_pred             EEeeeecccc----------------------ceeeecceeccccchhhhh-ccc---CcCccHHHHHHHHHhcCCeEEE
Confidence            7766665542                      2467899999999998863 322   2345567899999999999999


Q ss_pred             EecceEeEcCCHHHHHHHHHhhccCCCcc
Q 018622          176 IFRDYWEDIGTIKSFYEANMALTKESPAF  204 (353)
Q Consensus       176 ~~~g~w~dIgtp~~y~~a~~~ll~~~~~~  204 (353)
                      .++|+|.|||||++|..++..+.+...++
T Consensus       227 ~~~g~W~didt~~d~~~~~~~~~~~~~~~  255 (259)
T d1tzfa_         227 EHPGFWQPMDTLRDKVYLEGLWEKGKAPW  255 (259)
T ss_dssp             EECSCEEECCSHHHHHHHHHHHHTTCCTT
T ss_pred             EeCCEEEECCCHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999998888766544

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.31  E-value=4.6e-12  Score=111.85  Aligned_cols=27  Identities=15%  Similarity=0.284  Sum_probs=17.4

Q ss_pred             ceecCCCCCCCeEEeceeeeceEECCCcEEC
Q 018622          212 PFYTSPRFLPPTKIDNCRIKDAIISHGCFLR  242 (353)
Q Consensus       212 ~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~  242 (353)
                      .|++++.|.|.|.|+.    ++.||++|+|+
T Consensus         2 ~Ih~sAiI~~~a~Ig~----~V~IG~~~vIg   28 (259)
T d1j2za_           2 KIAKTAIISPKAEINK----GVEIGEFCVIG   28 (259)
T ss_dssp             CBCTTCEECTTSEECT----TCEECTTCEEC
T ss_pred             cCCCCCEECCCCEECC----CCEECCCCEEC
Confidence            5677777777777765    45555555555

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.30  E-value=4.3e-12  Score=112.16  Aligned_cols=55  Identities=20%  Similarity=0.236  Sum_probs=27.4

Q ss_pred             CCCCceecCCCCCCCeEEeceeeeceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEEC
Q 018622          208 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG  270 (353)
Q Consensus       208 ~~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~  270 (353)
                      ++++.|++++.|++++.|+.    ++.||++|+|+    .++.||++|.|+++|+|.+...++
T Consensus         3 ~~~~~I~p~a~I~~~~~Ig~----~v~Ig~~~~I~----~~v~Ig~~~~I~~~~~I~~~~~ig   57 (262)
T d2jf2a1           3 DKSAFVHPTAIVEEGASIGA----NAHIGPFCIVG----PHVEIGEGTVLKSHVVVNGHTKIG   57 (262)
T ss_dssp             CTTCEECTTCEECTTCEECT----TCEECTTCEEC----TTEEECTTCEECSSCEECSEEEEC
T ss_pred             CCCCEECCCCEECCCCEECC----CCEECCCCEEC----CCCEECCCCEEeCCEEEcCCcccc
Confidence            44455555555555555543    45666666665    234444444444444444444433

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.23  E-value=5.8e-11  Score=98.03  Aligned_cols=102  Identities=19%  Similarity=0.347  Sum_probs=65.4

Q ss_pred             CceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEE----eeeEEcCCcEECCCCEEece----EEECCccccchhHHH
Q 018622          211 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV----EHSIVGERSRLDYGVELKDT----VMLGADYYQTESEIA  281 (353)
Q Consensus       211 ~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v----~~~~ig~~~~ig~~~~i~~~----v~~~~~~~~~~~~~~  281 (353)
                      ..|.+++.|+|.++|.+    ++.||++|.|+ ++.|    ....||+++.++.++.+..+    +.+++.         
T Consensus        13 ~~Ig~~~~I~~~a~I~~----~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~---------   79 (172)
T d1xhda_          13 PKIASSAFIADYVTITG----DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD---------   79 (172)
T ss_dssp             CEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT---------
T ss_pred             CEECCCcEECCCCEEeC----CEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeee---------
Confidence            34555555666655543    45555555555 3444    34688888888888888765    344432         


Q ss_pred             HhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEE
Q 018622          282 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI  334 (353)
Q Consensus       282 ~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i  334 (353)
                               +.+++++.+.++.+++++.||.++.+.++..+++.+.++.+++|
T Consensus        80 ---------~~~~~~~~~~~~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV  123 (172)
T d1xhda_          80 ---------VTVGHQVILHSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLV  123 (172)
T ss_dssp             ---------CEECTTCEEESCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             ---------eeeeeeecccccccccceEEecccEeeCCcEEcCcccccceEEE
Confidence                     67777788888888888888888888776544444444444433

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.23  E-value=1.4e-11  Score=103.52  Aligned_cols=62  Identities=23%  Similarity=0.267  Sum_probs=36.8

Q ss_pred             eEeCCCeEEcceEeCCCCEECCCeEEccCCC-------cccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          291 IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       291 ~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +.++.++.+..+.++.++.+++++.......       +++.++++.++.|..+ +.||++++|++||+|
T Consensus       107 ~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~g-v~IG~~s~IgagsvV  175 (196)
T d1g97a1         107 TKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAP-VELGDNSLVGAGSTI  175 (196)
T ss_dssp             CEEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESS-CEECTTCEECTTCEE
T ss_pred             eEecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCC-cEECCCCEECCCCEE
Confidence            3444444555566666666666665544322       3444555555555555 346999999988875

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=2.6e-11  Score=86.33  Aligned_cols=61  Identities=15%  Similarity=0.273  Sum_probs=43.7

Q ss_pred             eEECCCcEEC-ceEEe-eeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEE
Q 018622          233 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI  310 (353)
Q Consensus       233 ~~ig~~~~i~-~~~v~-~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~I  310 (353)
                      +.||++|.|+ ++.+. ++.||++|+||++|+|+++.+.++                   +.|++++.|.+|+||+++.|
T Consensus        15 v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~-------------------~~I~~~s~i~~~~Ig~~~~I   75 (78)
T d1fxja1          15 LTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD-------------------CEISPYTVVEDANLAAACTI   75 (78)
T ss_dssp             EEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTT-------------------CEECTTCEEESEEECTTCEE
T ss_pred             EEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCC-------------------CEEcCCcEEECCEECCCCEE
Confidence            4444444444 33333 578888888888888888777776                   78888888888888888888


Q ss_pred             CC
Q 018622          311 GK  312 (353)
Q Consensus       311 g~  312 (353)
                      |+
T Consensus        76 GP   77 (78)
T d1fxja1          76 GP   77 (78)
T ss_dssp             SC
T ss_pred             Cc
Confidence            76

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.21  E-value=5.4e-11  Score=100.09  Aligned_cols=21  Identities=10%  Similarity=0.194  Sum_probs=12.5

Q ss_pred             eEeEcCCHHHHHHHHHhhccC
Q 018622          180 YWEDIGTIKSFYEANMALTKE  200 (353)
Q Consensus       180 ~w~dIgtp~~y~~a~~~ll~~  200 (353)
                      +..-+|++..-.+....+...
T Consensus        49 ~~iaIG~~~~R~~~~~~~~~~   69 (193)
T d3bswa1          49 FFIAIGNNEIRKKIYQKISEN   69 (193)
T ss_dssp             EEECCSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCcHHHHHHHHHhhhh
Confidence            345688887655555555443

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.20  E-value=5.7e-11  Score=101.33  Aligned_cols=94  Identities=10%  Similarity=0.169  Sum_probs=70.7

Q ss_pred             cCCCCceecCCCCCCCeEEec-eeee-----ceEECCCcEEC-ceEE------------------------eeeEEcCCc
Q 018622          207 YDPKTPFYTSPRFLPPTKIDN-CRIK-----DAIISHGCFLR-ECTV------------------------EHSIVGERS  255 (353)
Q Consensus       207 ~~~~~~i~~~~~i~~~~~i~~-~~i~-----~~~ig~~~~i~-~~~v------------------------~~~~ig~~~  255 (353)
                      ++|.+.+.+++.++++++|+. +.++     ++.||++|.|+ ++.+                        ..+.||++|
T Consensus        31 I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~~v  110 (210)
T d1qrea_          31 IDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNV  110 (210)
T ss_dssp             ECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTC
T ss_pred             ECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeecccc
Confidence            444554444455677777753 5552     35677777776 4444                        247899999


Q ss_pred             EECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEcc
Q 018622          256 RLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       256 ~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~  318 (353)
                      .||.+|.|.+.+.++++                  +.||.++.|.++.||+++.|++++.+.+
T Consensus       111 ~IG~~~~i~g~~~IGd~------------------~~IG~gs~i~~~~IG~~~vIg~~svv~g  155 (210)
T d1qrea_         111 SLAHQSQVHGPAAVGDD------------------TFIGMQAFVFKSKVGNNCVLEPRSAAIG  155 (210)
T ss_dssp             EECTTCEEEEEEEECTT------------------CEECTTCEEEEEEECTTCEECTTCEEES
T ss_pred             ccccccccccCCcccCC------------------cEeeCCccccccccccCcEEecCcEecC
Confidence            99999999888777775                  8999999999999999999999998865

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.20  E-value=6.6e-11  Score=102.56  Aligned_cols=162  Identities=19%  Similarity=0.244  Sum_probs=123.0

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeE-EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i-~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      ..+.||++++..+...++.   ..++.+++.++|.+ ...+++++++.|.+.++.+++...+...  +..||.+..+.++
T Consensus        72 ~~~~g~~~~~~~a~~~l~~---~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  146 (250)
T d1g97a2          72 SEQLGTGHAVMMTEPILEG---LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN--PFGYGRIVRNDNA  146 (250)
T ss_dssp             SSCCCHHHHHHTTHHHHTT---CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC--CTTSCEEEECTTC
T ss_pred             ccccccchHHHHHHHhhhc---ccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecc--cCCCceEEEeece
Confidence            4567999999999998873   23344556665654 4577999999999999999998888766  6788988888888


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCC---CCCchhhhhhhhhhhc-C
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSNDFGSEIIPAAIME-H  170 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~---~~~~~~~d~l~~l~~~-~  170 (353)
                      .+..+.++++.....                 ...+++.+|+|+|++..|...++....   ....+..+++..+++. .
T Consensus       147 ~v~~~~~~~~~~~~~-----------------~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~  209 (250)
T d1g97a2         147 EVLRIVEQKDATDFE-----------------KQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGE  209 (250)
T ss_dssp             CEEEEECGGGCCHHH-----------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCGGGHHHHHHHTTC
T ss_pred             EEEEeeccccccccc-----------------cccceeeeeeeecchHHHHHHHHHhccCcchhhHHHhHHHHHHHHCCC
Confidence            999999887643211                 124688999999999988777664332   1234567788887776 5


Q ss_pred             cEEEEEecceEeE--cCCHHHHHHHHHhhcc
Q 018622          171 DVQAYIFRDYWED--IGTIKSFYEANMALTK  199 (353)
Q Consensus       171 ~i~~~~~~g~w~d--Igtp~~y~~a~~~ll~  199 (353)
                      +|.++.++++|.+  |+|++++..|++.+..
T Consensus       210 ~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~  240 (250)
T d1g97a2         210 KVGAYTLKDFDESLGVNDRVALATAESVMRR  240 (250)
T ss_dssp             CEEEEECSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCcceecCCCCHHHHHHHHHHHHH
Confidence            8999999999977  5699999888776654

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1.2e-10  Score=82.67  Aligned_cols=66  Identities=21%  Similarity=0.319  Sum_probs=58.5

Q ss_pred             eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCccccc
Q 018622          247 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEAD  326 (353)
Q Consensus       247 ~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~  326 (353)
                      .++.||++|.|+++++|++.+.++++                  ++||++|.|++|.|++++.|++++.+.+        
T Consensus        13 g~v~IG~~~~I~~~~~i~g~~~IG~~------------------v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~--------   66 (78)
T d1fxja1          13 GTLTHGRDVEIDTNVIIEGNVTLGHR------------------VKIGTGCVIKNSVIGDDCEISPYTVVED--------   66 (78)
T ss_dssp             EEEEECSSCEECTTEEEEEEEEECTT------------------CEECTTCEEESCEECTTCEECTTCEEES--------
T ss_pred             ccEEECCCCEECCccEEeCCcEECCC------------------CEECCCeEEecCEECCCCEEcCCcEEEC--------
Confidence            46899999999999999998888876                  8999999999999999999999999864        


Q ss_pred             CCCCceEEccCeEEecCCcEECCC
Q 018622          327 RPELGFYIRSGITIIMEKATIEDG  350 (353)
Q Consensus       327 ~~~~~~~i~~~~~vig~~~~i~~g  350 (353)
                                  ++||++++|||.
T Consensus        67 ------------~~Ig~~~~IGPf   78 (78)
T d1fxja1          67 ------------ANLAAACTIGPF   78 (78)
T ss_dssp             ------------EEECTTCEESCC
T ss_pred             ------------CEECCCCEECcC
Confidence                        567888888874

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=1e-10  Score=96.57  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=64.5

Q ss_pred             CCCceecCCCCCCCeEEeceeeeceEECCCcEEC-ceEE----eeeEEcCCcEECCCCEEeceE----EECCccccchhH
Q 018622          209 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV----EHSIVGERSRLDYGVELKDTV----MLGADYYQTESE  279 (353)
Q Consensus       209 ~~~~i~~~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v----~~~~ig~~~~ig~~~~i~~~v----~~~~~~~~~~~~  279 (353)
                      .+..|++++.|+|++.|.+    ++.||++|.|+ ++.+    ....+++++.++..+.+..+.    ..+..       
T Consensus         9 ~~~~I~~~~~I~~~a~I~g----~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~-------   77 (173)
T d1v3wa_           9 KKPRIHPSAFVDENAVVIG----DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY-------   77 (173)
T ss_dssp             BCCEECTTCEECTTSEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS-------
T ss_pred             CCCEECcCcEECCCCEEeC----ceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcc-------
Confidence            3445666666666666654    45555555555 3333    356788888888888776432    11111       


Q ss_pred             HHHhhcCCCcceEeCCCeEEcceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCcc
Q 018622          280 IASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV  352 (353)
Q Consensus       280 ~~~~~~~~~~~~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~v  352 (353)
                                 +..........+.||+++.||.++.+..+      +++|++++|+.+ ++|.+++.|+++++
T Consensus        78 -----------~~~~~~~~~~~~~Ig~~~~ig~~~~i~~g------v~Ig~~~vIgag-svV~~~~~i~~~~i  132 (173)
T d1v3wa_          78 -----------VTIGHNAMVHGAKVGNYVIIGISSVILDG------AKIGDHVIIGAG-AVVPPNKEIPDYSL  132 (173)
T ss_dssp             -----------CEECTTCEEESCEECSSEEECTTCEECTT------CEECSSEEECTT-CEECTTCEECTTEE
T ss_pred             -----------eeeeeeeeeeeeecCCcccccceeeecCC------EEEcceeEEcCC-cEEeCCeEeCCCCE
Confidence                       23344444445666666666666666554      445555666555 34466666666654

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.12  E-value=2e-10  Score=98.43  Aligned_cols=142  Identities=9%  Similarity=0.039  Sum_probs=98.3

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR   95 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~   95 (353)
                      ...+||+++|++|+++++       ++|++.++|++++..+.+.+       ....++.....+  +.+++++..+++++
T Consensus        80 ~~~~Gt~~sl~~a~~~l~-------~~~ii~~dd~~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~  143 (229)
T d1jyka_          80 YADYNNFYSLYLVKEELA-------NSYVIDADNYLFKNMFRNDL-------TRSTYFSVYRED--CTNEWFLVYGDDYK  143 (229)
T ss_dssp             TTTSCTHHHHHTTGGGCT-------TEEEEETTEEESSCCCCSCC-------CSEEEEECEESS--CSSCCEEEECTTCB
T ss_pred             ccccccccccccchhhhc-------ccccccccccccccchhhhh-------hccccceeeeee--ccccceeEEccCCc
Confidence            556899999999998886       57877777766554433221       123344434444  56788888999999


Q ss_pred             eeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHH---HhhC--CCC-Cchhhhhhhhhhhc
Q 018622           96 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLL---RWRY--PTS-NDFGSEIIPAAIME  169 (353)
Q Consensus        96 V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l---~~~~--~~~-~~~~~d~l~~l~~~  169 (353)
                      |..+.++|..                        .++.+|+|+|++..++.+.   ++..  ... ..+..+++...+.+
T Consensus       144 i~~~~~~~~~------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (229)
T d1jyka_         144 VQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKE  199 (229)
T ss_dssp             EEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGG
T ss_pred             eeeEEEeccc------------------------ceEEEEEEEEcHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence            9999988752                        4678899999987665433   2211  111 22344566777778


Q ss_pred             CcEEEEEecc-eEeEcCCHHHHHHHHHhh
Q 018622          170 HDVQAYIFRD-YWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       170 ~~i~~~~~~g-~w~dIgtp~~y~~a~~~l  197 (353)
                      .+++.+..++ .|.+|+||++|.+|+..+
T Consensus       200 ~~~~~~~~~~~~~~~I~t~edl~~a~~~~  228 (229)
T d1jyka_         200 LDVYVEELEGNSIYEIDSVQDYRKLEEIL  228 (229)
T ss_dssp             CCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred             CCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence            8899988876 599999999999997654

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.12  E-value=3e-10  Score=93.64  Aligned_cols=98  Identities=20%  Similarity=0.360  Sum_probs=63.2

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEece---EEECCccccchhHHHHhhcCCCcceEeCCCeEEc-----ceE
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-----NCI  303 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-----~~i  303 (353)
                      +++|+++|+|.    .++.||++|.|+++|+|...   +.++.+                  +.++.++.+.     .++
T Consensus        18 ~~~I~~~a~I~----~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~------------------~~i~~~~~~~~~~~~~~~   75 (172)
T d1xhda_          18 SAFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDR------------------VNVQDQCTLHQSPQYPLI   75 (172)
T ss_dssp             TCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECCTTCCEE
T ss_pred             CcEECCCCEEe----CCEEECCCcEecCCcccccccccccccce------------------eeeeeeceeccCCcCCee
Confidence            44555555554    47899999999999999755   455544                  5666666664     256


Q ss_pred             eCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          304 IDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       304 ig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +++++.++.++.+.+ ..+++.++++.++.|..+ +.||++++|++||+|
T Consensus        76 ig~~~~~~~~~~~~~-~~i~~~~~ig~~~~i~~g-v~IG~~~~IgagsvV  123 (172)
T d1xhda_          76 LEDDVTVGHQVILHS-CHIKKDALIGMGSIILDG-AEIGEGAFIGAGSLV  123 (172)
T ss_dssp             ECTTCEECTTCEEES-CEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred             eeeeeeeeeeecccc-cccccceEEecccEeeCC-cEEcCcccccceEEE
Confidence            666666666666643 345566666666666666 344777777666654

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.07  E-value=1.5e-10  Score=91.53  Aligned_cols=101  Identities=14%  Similarity=0.191  Sum_probs=68.3

Q ss_pred             CCCCCCCeEEeceeeeceEECCCcEEC-ceEEeeeEEcCC-------------------cEECCCCEEeceEEECCcccc
Q 018622          216 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGER-------------------SRLDYGVELKDTVMLGADYYQ  275 (353)
Q Consensus       216 ~~~i~~~~~i~~~~i~~~~ig~~~~i~-~~~v~~~~ig~~-------------------~~ig~~~~i~~~v~~~~~~~~  275 (353)
                      ++.|++++.|.++.+.+++||++|.|+ ++.|.++++.++                   +.||++|.|+++++..+    
T Consensus        14 ~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~----   89 (135)
T d1yp2a1          14 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKN----   89 (135)
T ss_dssp             EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTT----
T ss_pred             eCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCC----
Confidence            456888888877778889999999999 788887766654                   56777777776665555    


Q ss_pred             chhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEE
Q 018622          276 TESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI  347 (353)
Q Consensus       276 ~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i  347 (353)
                                     ++||+++.+. ++.+.+.+.++.++.+.++.           +.|+++ ++|++|++|
T Consensus        90 ---------------~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~-----------vvIg~~-~~I~~g~vI  135 (135)
T d1yp2a1          90 ---------------ARIGDNVKIINKDNVQEAARETDGYFIKSGI-----------VTVIKD-ALIPSGIII  135 (135)
T ss_dssp             ---------------CEECTTCEECCSSCCSCEEEGGGTEEEETTE-----------EEECTT-CEECTTCBC
T ss_pred             ---------------CEECCCcEECCCcccccceeeCCCEEECCCe-----------EEECCC-CEECcCcCC
Confidence                           6777777765 44455555555555554331           345666 445777664

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.4e-10  Score=97.85  Aligned_cols=62  Identities=21%  Similarity=0.209  Sum_probs=40.6

Q ss_pred             eEeCCCeEEcceEeCCCCEECCCeEEccCC-------CcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          291 IGVGRNTKIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       291 ~~ig~~~~i~~~iig~~~~Ig~~~~i~~~~-------~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +.+++++.+.++.+++++.+++++......       .+++.++++.++.|..+ +.||++++|++||+|
T Consensus       108 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~-v~IG~~s~IgagsvV  176 (201)
T d2oi6a1         108 SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVGKGATIAAGTTV  176 (201)
T ss_dssp             CEEEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESS-EEECTTCEECTTCEE
T ss_pred             eEEceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCC-cEECCCCEECCCCEE
Confidence            344444444466777788888777655533       24555666666666666 456999999999875

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=2.4e-10  Score=96.40  Aligned_cols=56  Identities=14%  Similarity=0.131  Sum_probs=35.6

Q ss_pred             eecCCCCCCCeEEe-ceeeeceEECCCcEEC-ceEE---eeeEEcCCcEECCCCEEeceEEECC
Q 018622          213 FYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGA  271 (353)
Q Consensus       213 i~~~~~i~~~~~i~-~~~i~~~~ig~~~~i~-~~~v---~~~~ig~~~~ig~~~~i~~~v~~~~  271 (353)
                      +..++.|+||+++. +.   ++.||++|.|+ ++.|   ..+.||++|.|++++.|.......+
T Consensus        57 iG~~~~I~p~~~i~~G~---nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~  117 (200)
T d1krra_          57 VGENAWVEPPVYFSYGS---NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVH  117 (200)
T ss_dssp             CCSSCEECSCEEESCST---TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSS
T ss_pred             CCCCCEEcCCEEEecCC---ccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccce
Confidence            45566777777764 21   34555555555 3444   3468899999999988877654443

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.02  E-value=4.4e-10  Score=94.13  Aligned_cols=10  Identities=20%  Similarity=0.159  Sum_probs=4.4

Q ss_pred             eEECCCcEEC
Q 018622          233 AIISHGCFLR  242 (353)
Q Consensus       233 ~~ig~~~~i~  242 (353)
                      +.||++|+|+
T Consensus        33 v~IG~~~~I~   42 (196)
T d1g97a1          33 TKIGAETVLT   42 (196)
T ss_dssp             CEECTTCEEC
T ss_pred             cEECCCceEc
Confidence            4444444444

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=98.97  E-value=8.2e-10  Score=95.13  Aligned_cols=107  Identities=13%  Similarity=0.230  Sum_probs=70.1

Q ss_pred             CCCceecCCCCCCCeEEeceeee-ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCC
Q 018622          209 PKTPFYTSPRFLPPTKIDNCRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG  287 (353)
Q Consensus       209 ~~~~i~~~~~i~~~~~i~~~~i~-~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~  287 (353)
                      |.+.+..++.|.+++.+.++-|. +++||++|.|.    ..++||..|+||++|.|+..+.+++. +.+....+.+++++
T Consensus       107 Pga~VR~GayI~~~vVlmps~VNigA~ig~~~mid----t~a~vgs~aqIG~~vhis~g~~igGv-lep~~~~p~iIed~  181 (274)
T d3tdta_         107 PPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVD----TWATVGSCAQIGKNVHLSGGVGIGGV-LEPLQANPTIIEDN  181 (274)
T ss_dssp             TTCEEBTTCEECTTCEECSEEECTTCEECTTCEEC----TTEEECTTCEECTTCEECTTCEECCS-BTTBCSSCCEECTT
T ss_pred             CCceeccCcEECCCcEEeeeEeccccEEcCCcEEc----ccceecceeEECCCeEECCCcEEEec-cccCCCCCcEEecC
Confidence            55555666666666655555443 67777777777    24677777777777777777666552 33333345556666


Q ss_pred             CcceEeCCCeEEc-ceEeCCCCEECCCeEEccCCCcc
Q 018622          288 KVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQ  323 (353)
Q Consensus       288 ~~~~~ig~~~~i~-~~iig~~~~Ig~~~~i~~~~~~~  323 (353)
                         |.||.+|.|- +++||+++.||+|+++..++.+-
T Consensus       182 ---~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t~i~  215 (274)
T d3tdta_         182 ---CFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIY  215 (274)
T ss_dssp             ---CEECTTCEECTTCEECTTCEECTTCEECTTCCEE
T ss_pred             ---cEeccCceEecCEEecCceEeccceEEeccccce
Confidence               7788777775 78888888888888887765543

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=98.97  E-value=9.2e-10  Score=94.80  Aligned_cols=97  Identities=23%  Similarity=0.346  Sum_probs=64.8

Q ss_pred             CCCCCeEEeceeeeceEECCCcEECceEE-eeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCC
Q 018622          218 RFLPPTKIDNCRIKDAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN  296 (353)
Q Consensus       218 ~i~~~~~i~~~~i~~~~ig~~~~i~~~~v-~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~  296 (353)
                      ++.|++.+..    +++|++|+++-++-| ..+.||++|.|..++.|+.+..++.+                  ++|+.|
T Consensus       104 RvvPga~VR~----GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~aqIG~~------------------vhis~g  161 (274)
T d3tdta_         104 RVVPPATVRQ----GAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLSGG  161 (274)
T ss_dssp             EECTTCEEBT----TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT------------------CEECTT
T ss_pred             EeCCCceecc----CcEECCCcEEeeeEeccccEEcCCcEEcccceecceeEECCC------------------eEECCC
Confidence            4455544433    578888877765433 24666777777777777766666655                  788888


Q ss_pred             eEEcc---------eEeCCCCEECCCeEEccCCCcccccCCCCceEEcc
Q 018622          297 TKIRN---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRS  336 (353)
Q Consensus       297 ~~i~~---------~iig~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~  336 (353)
                      +.|.+         ++|+++|.||+++.+..+..+++.++++.+++|..
T Consensus       162 ~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~  210 (274)
T d3tdta_         162 VGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQ  210 (274)
T ss_dssp             CEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             cEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEec
Confidence            87764         56999999999998887755555555555555544

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=98.95  E-value=1.3e-09  Score=91.46  Aligned_cols=28  Identities=25%  Similarity=0.277  Sum_probs=12.8

Q ss_pred             eEeCCCeEEc-ceEeCCCCEECCCeEEcc
Q 018622          291 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN  318 (353)
Q Consensus       291 ~~ig~~~~i~-~~iig~~~~Ig~~~~i~~  318 (353)
                      +.+++++.+. .+.||++|.||.++++..
T Consensus       131 ~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~  159 (193)
T d3bswa1         131 SHVSVGAKCAGNVKIGKNCFLGINSCVLP  159 (193)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ccccccccccccceeeccccCCceeeEcC
Confidence            3444444443 344444444444444443

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=1.9e-09  Score=89.44  Aligned_cols=38  Identities=13%  Similarity=0.200  Sum_probs=25.0

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECC
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA  271 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~  271 (353)
                      +++|+++|+|.+.  ....||++|.|+++|.|........
T Consensus        78 ~~~I~~~~~I~d~--~~I~IG~~~~Ig~~v~I~~~~~~~~  115 (182)
T d1ocxa_          78 NFFANFDCVMLDV--CPIRIGDNCMLAPGVHIYTATHPID  115 (182)
T ss_dssp             SEEECSSEEEECS--SCEEECTTCEECTTCEEECEECCSS
T ss_pred             ccEECCCcEEecC--CeEEECCCeEECcCceEeecccccc
Confidence            3555555555311  2357999999999998888776554

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.82  E-value=1.4e-08  Score=83.40  Aligned_cols=97  Identities=19%  Similarity=0.240  Sum_probs=51.1

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEec---eEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-----ceEe
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKD---TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-----NCII  304 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-----~~ii  304 (353)
                      ++|+++|+|.    .++.||++|.||++|.|..   .+.++..                  +.++..+.+.     .+.+
T Consensus        17 ~~I~~~a~I~----g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~------------------~~i~~~~~~~~~~~~~~~~   74 (173)
T d1v3wa_          17 AFVDENAVVI----GDVVLEEKTSVWPSAVLRGDIEQIYVGKY------------------SNVQDNVSIHTSHGYPTEI   74 (173)
T ss_dssp             CEECTTSEEE----EEEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEEECBTTBCEEE
T ss_pred             cEECCCCEEe----CceEECCCCEECCCccccccccccccccc------------------cccccccccccccCCCccc
Confidence            4444444444    4678888888888888874   3344432                  4444444443     2233


Q ss_pred             CCCCEECCCeEEccCCCcccccCCCCceEEccCeEEecCCcEECCCccC
Q 018622          305 DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI  353 (353)
Q Consensus       305 g~~~~Ig~~~~i~~~~~~~~~~~~~~~~~i~~~~~vig~~~~i~~g~vv  353 (353)
                      +.++.+....... ...+++.+.++.++.|..++ +||++++|++||+|
T Consensus        75 ~~~~~~~~~~~~~-~~~Ig~~~~ig~~~~i~~gv-~Ig~~~vIgagsvV  121 (173)
T d1v3wa_          75 GEYVTIGHNAMVH-GAKVGNYVIIGISSVILDGA-KIGDHVIIGAGAVV  121 (173)
T ss_dssp             CSSCEECTTCEEE-SCEECSSEEECTTCEECTTC-EECSSEEECTTCEE
T ss_pred             Ccceeeeeeeeee-eeecCCcccccceeeecCCE-EEcceeEEcCCcEE
Confidence            3333333322222 23344455555556666653 44666666666653

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=98.76  E-value=3.1e-09  Score=89.79  Aligned_cols=16  Identities=19%  Similarity=0.345  Sum_probs=10.3

Q ss_pred             eeEEcCCcEECCCCEE
Q 018622          248 HSIVGERSRLDYGVEL  263 (353)
Q Consensus       248 ~~~ig~~~~ig~~~~i  263 (353)
                      ++.||++|.|+++|.|
T Consensus        60 ~v~IG~~~~Ig~gv~I   75 (203)
T d1mr7a_          60 KLKIGKFCSIGPGVTI   75 (203)
T ss_dssp             CEEECSSCEECTTCEE
T ss_pred             ccEECCCeEECCCCcE
Confidence            4566666666666665

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.63  E-value=5.2e-08  Score=87.94  Aligned_cols=59  Identities=7%  Similarity=0.260  Sum_probs=27.6

Q ss_pred             CCCCceecCCCCCCCeEEec-eeee-ceEECCCcEECceEE-eeeEEcCCcEECCCCEEece
Q 018622          208 DPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDT  266 (353)
Q Consensus       208 ~~~~~i~~~~~i~~~~~i~~-~~i~-~~~ig~~~~i~~~~v-~~~~ig~~~~ig~~~~i~~~  266 (353)
                      ++++.+.+++.+.+++.|.+ +.|. ++.|+++|.|+++.| .++.|+++|+|+.++.++++
T Consensus        61 ~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~  122 (320)
T d2f9ca1          61 DENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREEC  122 (320)
T ss_dssp             STTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSE
T ss_pred             CCCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeee
Confidence            34455555555555555543 4442 455555555543333 23444444444444444333

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=5.6e-08  Score=81.40  Aligned_cols=36  Identities=19%  Similarity=0.386  Sum_probs=23.9

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECC
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA  271 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~  271 (353)
                      ++.|+++|+|+    .++.||++|+|+++|+|.++.++.+
T Consensus        20 ~v~Ig~~vvI~----~~v~IG~~~~I~~~~~I~~~~~~~~   55 (201)
T d2oi6a1          20 DVEIDTNVIIE----GNVTLGHRVKIGTGCVIKNSVIGDD   55 (201)
T ss_dssp             SCEECTTEEEE----EEEEECTTCEECTTCEEESCEECTT
T ss_pred             CCEECCCCEEC----CceEECCCcEECCCEEEeeeccCCc
Confidence            44555555554    3577777888877777777777665

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=3.9e-08  Score=82.47  Aligned_cols=39  Identities=13%  Similarity=0.274  Sum_probs=19.6

Q ss_pred             ceEECCCcEECceEEeeeEEcCCcEECCCCEEe--ceEEECCc
Q 018622          232 DAIISHGCFLRECTVEHSIVGERSRLDYGVELK--DTVMLGAD  272 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~--~~v~~~~~  272 (353)
                      +++|++++.+..+  .++.||++|+|+.+|+|.  ..+.++++
T Consensus        60 ~~~I~p~~~i~~G--~nv~IG~~~~I~~~~~I~~~~~i~IG~~  100 (200)
T d1krra_          60 NAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDN  100 (200)
T ss_dssp             SCEECSCEEESCS--TTEEECSSCEECSCEEEECSSCEEECSS
T ss_pred             CCEEcCCEEEecC--CccEECCccEECceEEEecCCCcEeCCC
Confidence            3445555544310  245666666666666663  33444443

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=2.7e-07  Score=79.10  Aligned_cols=158  Identities=15%  Similarity=0.173  Sum_probs=102.4

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEEecCHHHHHHH-HHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS-HVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~-h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      ..++||+++++++..++..     +.++++..+|..+... ..+-.. +........++..+..+  +.+++.+..+. +
T Consensus        74 ~~~~g~~~~~~~~~~~i~~-----~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~  144 (248)
T d2oi6a2          74 AEQLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISV-ETLQRLRDAKPQGGIGLLTVKLDD--PTGYGRITREN-G  144 (248)
T ss_dssp             SSCCCHHHHHHHHGGGSCT-----TSEEEEEETTCTTCCH-HHHHHHHHHCCTTSEEEEEEECSC--CTTSCEEEEET-T
T ss_pred             ccCcccHHHHHhhhhhhcc-----ccceeeecCccccccc-hhHHHHHHHhhccccceeEEEecC--Ccccccccccc-C
Confidence            5578999999999988863     4678888888875432 122111 23344455566665554  56777777654 5


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC--C-Cchhhhhhhhhhhc-C
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--S-NDFGSEIIPAAIME-H  170 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~--~-~~~~~d~l~~l~~~-~  170 (353)
                      ....+.+++......                 ....+..+|.|.|+.+.|...++.....  . ..+.+|++..+++. .
T Consensus       145 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ltd~~~~~~~~g~  207 (248)
T d2oi6a2         145 KVTGIVEHKDATDEQ-----------------RQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGR  207 (248)
T ss_dssp             EEEEEECGGGCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTC
T ss_pred             ccceeeeccCCChhh-----------------hhhhhhhhhhhccchHHHHHHHHHhhccccchhhhhhHHHHHHHHCCC
Confidence            555555433221110                 0245788999999999887776543321  1 12356788888776 5


Q ss_pred             cEEEEEecceEeE--cCCHHHHHHHHHhhcc
Q 018622          171 DVQAYIFRDYWED--IGTIKSFYEANMALTK  199 (353)
Q Consensus       171 ~i~~~~~~g~w~d--Igtp~~y~~a~~~ll~  199 (353)
                      +|.++..+++|..  |+||+++.+|++.+..
T Consensus       208 ~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~  238 (248)
T d2oi6a2         208 EIVAVHPQRLSEVEGVNNRLQLSRLERVYQS  238 (248)
T ss_dssp             CEEEECCSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCHHHhCCCCCHHHHHHHHHHHHH
Confidence            8888888888753  7799999998876543

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.44  E-value=1.2e-07  Score=81.67  Aligned_cols=80  Identities=30%  Similarity=0.456  Sum_probs=35.3

Q ss_pred             eEECCCcEECceEEeeeEEcCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEEc-ceEeCCCCEEC
Q 018622          233 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIG  311 (353)
Q Consensus       233 ~~ig~~~~i~~~~v~~~~ig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i~-~~iig~~~~Ig  311 (353)
                      +.||+++.|.+.  ...+||+++.||++|.|...+.++...... ......++++   +.||.|+.|. +..||+++.||
T Consensus       144 ~~Ig~g~~i~h~--~givig~~~~ig~~~~i~~~v~~~~~~~~~-~~~~~~Ig~~---v~IGaga~Ilg~v~IG~~a~Ig  217 (241)
T d1ssqa_         144 AKIGHGIMFDHA--TGIVVGETSVIENDVSILQGVTLGGTGKES-GDRHPKVREG---VMIGAGAKILGNIEVGKYAKIG  217 (241)
T ss_dssp             CEECSSCEESSC--TTCEECTTCEECTTCEECTTCEEECCSSSC-SSCSCEECTT---CEECTTCEEESSCEECTTCEEC
T ss_pred             CEEccCcccCcc--ceEEEeccceecCCeeecccccccccccCC-CCCCCccCCC---eEECCCCEEcCCcEECCCCEEC
Confidence            444445555411  245666666666666665555554310000 0001222333   4444444443 44555555555


Q ss_pred             CCeEEcc
Q 018622          312 KDVVIVN  318 (353)
Q Consensus       312 ~~~~i~~  318 (353)
                      +|+++..
T Consensus       218 AgsvV~k  224 (241)
T d1ssqa_         218 ANSVVLN  224 (241)
T ss_dssp             TTCEECS
T ss_pred             CCCEECC
Confidence            5554443

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=9.8e-07  Score=72.58  Aligned_cols=36  Identities=11%  Similarity=0.149  Sum_probs=21.5

Q ss_pred             ceEECCCcEECceEEeeeEEcC--CcEECCCCEEeceEEECC
Q 018622          232 DAIISHGCFLRECTVEHSIVGE--RSRLDYGVELKDTVMLGA  271 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~ig~--~~~ig~~~~i~~~v~~~~  271 (353)
                      ++.||++|.|+    .+++|.+  .++||++|.|.+.+.+..
T Consensus        72 ni~IG~~~~I~----~~~~I~d~~~I~IG~~~~Ig~~v~I~~  109 (182)
T d1ocxa_          72 NIFLGNNFFAN----FDCVMLDVCPIRIGDNCMLAPGVHIYT  109 (182)
T ss_dssp             TEEECSSEEEC----SSEEEECSSCEEECTTCEECTTCEEEC
T ss_pred             ceeECCccEEC----CCcEEecCCeEEECCCeEECcCceEee
Confidence            56666666666    2355544  336677777776665554

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.37  E-value=5.9e-07  Score=80.80  Aligned_cols=12  Identities=0%  Similarity=0.027  Sum_probs=6.5

Q ss_pred             hhcCcEEEEEec
Q 018622          167 IMEHDVQAYIFR  178 (353)
Q Consensus       167 ~~~~~i~~~~~~  178 (353)
                      ++.+.+.+|..+
T Consensus        36 ~~~~~~gg~~~~   47 (320)
T d2f9ca1          36 VKAGTSGGWVDA   47 (320)
T ss_dssp             SCTTCEEEEESS
T ss_pred             cccCCCCceeec
Confidence            344566666553

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.21  E-value=2.8e-07  Score=77.67  Aligned_cols=17  Identities=12%  Similarity=0.405  Sum_probs=12.1

Q ss_pred             eeeEEcCCcEECCCCEE
Q 018622          247 EHSIVGERSRLDYGVEL  263 (353)
Q Consensus       247 ~~~~ig~~~~ig~~~~i  263 (353)
                      .+..||++|.|+++|+|
T Consensus        53 ~~v~IG~~~~I~~g~~I   69 (208)
T d1xata_          53 DKLVIGSFCSIGSGAAF   69 (208)
T ss_dssp             CCEEECSSCEECTTCEE
T ss_pred             CeeEECCCCEECCCCEE
Confidence            34677777777777776

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=98.12  E-value=3.5e-06  Score=70.49  Aligned_cols=57  Identities=7%  Similarity=0.090  Sum_probs=27.0

Q ss_pred             eecCCCCCCCeEEec-eee-eceEECCCcEEC-ce-------EE-eeeEEcCCcEECCCCEEeceEEE
Q 018622          213 FYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-EC-------TV-EHSIVGERSRLDYGVELKDTVML  269 (353)
Q Consensus       213 i~~~~~i~~~~~i~~-~~i-~~~~ig~~~~i~-~~-------~v-~~~~ig~~~~ig~~~~i~~~v~~  269 (353)
                      +||.+.+...+++.+ +.+ .++.||++|+|+ .+       .+ ..++|++++.||++|.|...+.+
T Consensus         8 i~P~~~~~~~~~I~~~v~i~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~v~IG~~~~Ig~gv~I   75 (203)
T d1mr7a_           8 MYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTI   75 (203)
T ss_dssp             SSCSTTCCSEEEHHHHHTTSTTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEE
T ss_pred             cCCCCCCCceEEECCCeEECCCEEECCCcEEcCCcCcccCceEEeeeCEECCccEECCCeEECCCCcE
Confidence            444444444444432 222 256666666665 11       11 13445555666666666555433

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.07  E-value=8.1e-06  Score=69.93  Aligned_cols=81  Identities=14%  Similarity=0.126  Sum_probs=48.3

Q ss_pred             ceEECCCcEECceEEeeeEE--cCCcEECCCCEEeceEEECCccccchhHHHHhhcCCCcceEeCCCeEE---cceEeCC
Q 018622          232 DAIISHGCFLRECTVEHSIV--GERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI---RNCIIDK  306 (353)
Q Consensus       232 ~~~ig~~~~i~~~~v~~~~i--g~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~i---~~~iig~  306 (353)
                      ++.|+++|.|+.    +..|  +.+++||+.+.|++.+.+..+                  ++++.....   +..+||+
T Consensus       137 g~~I~~~~~Ig~----g~~i~h~~givig~~~~ig~~~~i~~~------------------v~~~~~~~~~~~~~~~Ig~  194 (241)
T d1ssqa_         137 DVDIHPAAKIGH----GIMFDHATGIVVGETSVIENDVSILQG------------------VTLGGTGKESGDRHPKVRE  194 (241)
T ss_dssp             SCEECTTCEECS----SCEESSCTTCEECTTCEECTTCEECTT------------------CEEECCSSSCSSCSCEECT
T ss_pred             eeccccCCEEcc----CcccCccceEEEeccceecCCeeeccc------------------ccccccccCCCCCCCccCC
Confidence            578888888872    3455  347777777777766655543                  344322222   2467888


Q ss_pred             CCEECCCeEEccCCCcccccCCCCceEE
Q 018622          307 NVKIGKDVVIVNKDDVQEADRPELGFYI  334 (353)
Q Consensus       307 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~i  334 (353)
                      +|.||+|++|.++..+++.++||.++++
T Consensus       195 ~v~IGaga~Ilg~v~IG~~a~IgAgsvV  222 (241)
T d1ssqa_         195 GVMIGAGAKILGNIEVGKYAKIGANSVV  222 (241)
T ss_dssp             TCEECTTCEEESSCEECTTCEECTTCEE
T ss_pred             CeEECCCCEEcCCcEECCCCEECCCCEE
Confidence            8888888887776444444333333333

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.46  E-value=2.6e-05  Score=65.20  Aligned_cols=21  Identities=0%  Similarity=-0.162  Sum_probs=15.2

Q ss_pred             eEEcCCcEECCCCEEeceEEE
Q 018622          249 SIVGERSRLDYGVELKDTVML  269 (353)
Q Consensus       249 ~~ig~~~~ig~~~~i~~~v~~  269 (353)
                      ..+.+.+.||++|.|...+.+
T Consensus        49 ~~~~~~v~IG~~~~I~~g~~I   69 (208)
T d1xata_          49 RDDVDKLVIGSFCSIGSGAAF   69 (208)
T ss_dssp             CSSSCCEEECSSCEECTTCEE
T ss_pred             CCCcCeeEECCCCEECCCCEE
Confidence            445677889999999776544

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.47  E-value=0.019  Score=47.91  Aligned_cols=174  Identities=11%  Similarity=0.115  Sum_probs=98.4

Q ss_pred             ccccccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE--ecCHHHHHHHHHHCCCcEEEEEEEeCCC---CCCcceEEEE
Q 018622           16 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGES---RASDYGLVKI   90 (353)
Q Consensus        16 ~~~lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~--~~dl~~~~~~h~~~~a~~tll~~~~~~~---~~~~~g~v~~   90 (353)
                      ....||..+...+..+..    .+.+.++.+.||...  ..++..+++.+.......+.........   ..........
T Consensus        70 ~~~~~~~~~~~~~~~~~~----~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  145 (255)
T d1vica_          70 NHNSGTERLAEVVEKLAI----PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLT  145 (255)
T ss_dssp             SSCCHHHHHHHHHHHTTC----CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEE
T ss_pred             ccCCcchhhHHHHHHhhc----cCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhhccCccceeeee
Confidence            344566666655554433    244678888999854  3457888998888888777766654321   1123345566


Q ss_pred             CCCCCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhh--hhhhhhhh
Q 018622           91 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGS--EIIPAAIM  168 (353)
Q Consensus        91 d~~g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~--d~l~~l~~  168 (353)
                      ++++++..+...+............    .............+.|+|+|++..|..+... .+...+-.+  +.++.+-.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~le~~e~le~lr~l~n  220 (255)
T d1vica_         146 DKDGYVLYFSRSVIPYDRDQFMNLQ----DVQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-APTQLENLEKLEQLRVLYN  220 (255)
T ss_dssp             CTTSBEEEEESSCSSCCHHHHTTCS----CGGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCCHHHHHHTCTTHHHHHT
T ss_pred             ccCCcccccccccccccchhhhhcc----chhhcccccchheeeeeecccHHHHhhhhcc-CCChhHHHHhHHHHHHHHC
Confidence            7788888887665432110000000    0000000123455789999999999765432 111000000  12222233


Q ss_pred             cCcEEEEEecc-eEeEcCCHHHHHHHHHhhc
Q 018622          169 EHDVQAYIFRD-YWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       169 ~~~i~~~~~~g-~w~dIgtp~~y~~a~~~ll  198 (353)
                      ..+|..+..+. .++||+|++|+..|...+.
T Consensus       221 g~~I~~~~~~~~~~idIDt~eDl~~ae~ilk  251 (255)
T d1vica_         221 GERIHVELAKEVPAVGVDTAEDLEKVRAILA  251 (255)
T ss_dssp             TCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred             CCceeEEEeCCCCCcCCCCHHHHHHHHHHHH
Confidence            46888887765 5789999999999976554

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=96.39  E-value=0.014  Score=48.61  Aligned_cols=157  Identities=15%  Similarity=0.141  Sum_probs=91.0

Q ss_pred             ccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE--ecCHHHHHHHHHHCCCcEEEEEEEeCC--CCC-CcceEEEECCCC
Q 018622           20 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGE--SRA-SDYGLVKIDNMG   94 (353)
Q Consensus        20 GT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~--~~dl~~~~~~h~~~~a~~tll~~~~~~--~~~-~~~g~v~~d~~g   94 (353)
                      .+.+.+..+...++      .+.++.+.||...  ...+..+++.+................  ... ...........+
T Consensus        75 ~~~~~~~~~~~~~~------~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~~~~  148 (245)
T d1h7ea_          75 SGTDRLVEVMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQ  148 (245)
T ss_dssp             SHHHHHHHHHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTC
T ss_pred             cccHHHHHHHHhcC------CCEEEEecchhhhcccccchhhhhcccccccccccccccccccccccCCcceeeccchhh
Confidence            34556666666665      3778889999854  235778888877666544333332211  001 122333444556


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhh--hhhhhhhhcCcE
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGS--EIIPAAIMEHDV  172 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~--d~l~~l~~~~~i  172 (353)
                      .+..+...+.......               .........|+|+|+++.|..+.. ..+......+  +.++.+-...+|
T Consensus       149 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~g~~~~~~~~l~~~~~-~~~s~~e~~e~ie~lr~l~ng~~I  212 (245)
T d1h7ea_         149 DALYFSRSPIPYPRNA---------------EKARYLKHVGIYAYRRDVLQNYSQ-LPESMPEQAESLEQLRLMNAGINI  212 (245)
T ss_dssp             BEEEEESSCSSCCTTG---------------GGCCEEEEEEEEEEEHHHHHHGGG-SCCCHHHHHHTCTTHHHHHTTCCE
T ss_pred             hhhhhhhhhhhhhhcc---------------cccccceeeeeEEeeecccccccc-ccCChhhhhhhHHHHHHHHCCCeE
Confidence            6676665554322110               012346778999999999876532 1111100011  233322234789


Q ss_pred             EEEEecceEeEcCCHHHHHHHHHhhc
Q 018622          173 QAYIFRDYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       173 ~~~~~~g~w~dIgtp~~y~~a~~~ll  198 (353)
                      ..+..+..|.+|+|++||..|...+.
T Consensus       213 ~~~~~~~~~~~IDt~~Dl~~a~~il~  238 (245)
T d1h7ea_         213 RTFEVAATGPGVDTPACLEKVRALMA  238 (245)
T ss_dssp             EEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence            99988888999999999999876554

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=96.26  E-value=0.029  Score=46.62  Aligned_cols=165  Identities=9%  Similarity=0.117  Sum_probs=93.9

Q ss_pred             cccHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE--ecCHHHHHHHHHHCCCcEEEEEEEeCCCC---CCcceEEEECCC
Q 018622           19 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGESR---ASDYGLVKIDNM   93 (353)
Q Consensus        19 lGT~~al~~a~~~i~~~~~~~~~~flV~~gD~i~--~~dl~~~~~~h~~~~a~~tll~~~~~~~~---~~~~g~v~~d~~   93 (353)
                      .||..+...+.....    ...+.++.+.||...  ..++..+++.+.....+......+.....   .....-+..+.+
T Consensus        73 ~~~~~~~~~~~~~~~----~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~~~  148 (246)
T d1vh1a_          73 SGTERLAEVVEKCAF----SDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAE  148 (246)
T ss_dssp             -CHHHHHHHHHHTTC----CTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCEEEECTT
T ss_pred             ccchHHHHHHHhhcc----cccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchhcccCCCcceeeeccc
Confidence            345555444443332    234678889999854  34678888888888877766666543210   112233556778


Q ss_pred             CCeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchh--hhhhhhhhhcCc
Q 018622           94 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG--SEIIPAAIMEHD  171 (353)
Q Consensus        94 g~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~--~d~l~~l~~~~~  171 (353)
                      |++..|...+............   .     ......+...|+|+|+++.|...... .+...+-.  -+.++.+-...+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~giy~~~~~~l~~~~~~-~~s~~E~~e~le~lR~i~~g~~  219 (246)
T d1vh1a_         149 GYALYFSRATIPWDRDRFAEGL---E-----TVGDNFLRHLGIYGYRAGFIRRYVNW-QPSPLEHIEMLEQLRVLWYGEK  219 (246)
T ss_dssp             SBEEEEESSCSSCCHHHHSSCC---C-----CCCSCCEEEEEEEEEEHHHHHHHHHS-CCCHHHHHHTCTTHHHHHTTCC
T ss_pred             Ccccccccccchhhhhhhhhhh---h-----ccchhhheecceeeechhhhhhhccC-CCChHHHHHhHHHHHHHHCCCc
Confidence            9988887655432110000000   0     00123456789999999999755332 11100000  123333323468


Q ss_pred             EEEEEecc-eEeEcCCHHHHHHHHHh
Q 018622          172 VQAYIFRD-YWEDIGTIKSFYEANMA  196 (353)
Q Consensus       172 i~~~~~~g-~w~dIgtp~~y~~a~~~  196 (353)
                      +..+.+.. ..+||+|++|+..|...
T Consensus       220 i~~~~~~~~~~~~IDt~~Dl~~a~k~  245 (246)
T d1vh1a_         220 IHVAVAQEVPGTGVDTPEDLERVRAE  245 (246)
T ss_dssp             EEEEECSSCCCCCCCSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCCCCCHHHHHHHHhc
Confidence            88888865 46799999999988764

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.21  E-value=0.062  Score=47.99  Aligned_cols=166  Identities=8%  Similarity=0.030  Sum_probs=95.8

Q ss_pred             cccccHHHHHHHHH--HhhhhccCCCCeEEEEeCCeEEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCC
Q 018622           17 WFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG   94 (353)
Q Consensus        17 ~~lGT~~al~~a~~--~i~~~~~~~~~~flV~~gD~i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g   94 (353)
                      .|-|+|+.......  .+++.....-+++.+.+.|++....--.++.+|.++++++++-+.+...+....-.++..|+.-
T Consensus       183 ~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~lG~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~  262 (378)
T d2icya2         183 YPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKV  262 (378)
T ss_dssp             ECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEE
T ss_pred             ecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHHHHHHhcCCcceeEEEecCCCCCceeEEEEECCce
Confidence            37788877655332  2332223467899999999986554467889999999999987776543222223344454444


Q ss_pred             CeeEEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCC-----------------CCc
Q 018622           95 RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-----------------SND  157 (353)
Q Consensus        95 ~V~~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~-----------------~~~  157 (353)
                      +++.+.|.|...... .....            ...+.|++.++|+-++|+++++.....                 .+.
T Consensus       263 ~vvEyse~p~e~~~~-~~~~~------------~~~~~N~nn~~~~l~~l~~~~~~~~~~l~~~~~~K~~~~~~~iqlE~  329 (378)
T d2icya2         263 QLLEIAQVPDEHVNE-FKSIE------------KFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLET  329 (378)
T ss_dssp             EEECGGGSCGGGHHH-HHSSS------------SCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEEEETTEEEECCBC
T ss_pred             eeeehhcCChhHHhh-hcCCc------------CcceeeeeeeeeeHHHHHHHHhhccCCCceEecCcCCCCCCeeehhh
Confidence            566666666532110 00000            123579999999999999877643210                 111


Q ss_pred             hhhhhhhhhhhcCcEEEEEec-ceEeEcCCHHHHHHHHHhhc
Q 018622          158 FGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALT  198 (353)
Q Consensus       158 ~~~d~l~~l~~~~~i~~~~~~-g~w~dIgtp~~y~~a~~~ll  198 (353)
                      +..|+++.+   .+..++.++ ..+.-+-++.+++.++.++.
T Consensus       330 ~i~d~~~~~---~~~~~~eV~R~rF~PvKn~sDll~~~sd~y  368 (378)
T d2icya2         330 AAGAAIRFF---DNAIGVNVPRSRFLPVKASSDLLLVQSDLY  368 (378)
T ss_dssp             CGGGGGGGS---TTCEEEECCGGGCCBCCSHHHHHHHHSTTE
T ss_pred             HHHHHHHhC---CCcEEEEecccccCCCCChHHHHHHhhceE
Confidence            222333322   233444332 35777888888776665543

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.92  Score=36.24  Aligned_cols=141  Identities=14%  Similarity=0.024  Sum_probs=74.2

Q ss_pred             ccHHHHHHHHHHhhhhccCCCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCee
Q 018622           20 GTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA   97 (353)
Q Consensus        20 GT~~al~~a~~~i~~~~~~~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~   97 (353)
                      ++.++++++...+.+     .+.+++..+|.  +...++..+++.....+. ..+...+..+  ...   .....++...
T Consensus        80 ~~~~sv~~~~~~~~~-----~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~-~~v~~~~~~d--~~~---~~~~~~~~~~  148 (225)
T d1i52a_          80 ERADSVLAGLKAAGD-----AQWVLVHDAARPCLHQDDLARLLALSETSRT-GGILAAPVRD--TMK---RAEPGKNAIA  148 (225)
T ss_dssp             SHHHHHHHHHHTSTT-----CSEEEECCTTCTTCCHHHHHHHHGGGGTCSS-CEEEEEECCS--CEE---EECTTSSSEE
T ss_pred             chhHHHHhhhcccCc-----cceeeeeccCCCCCCHHHHHHHHhhhhhccc-ccccccceee--ccc---hhcccccccc
Confidence            466899999988863     46677777875  333446666665554443 4444444332  111   1112223333


Q ss_pred             EEEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhh-cCcEEEEE
Q 018622           98 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIM-EHDVQAYI  176 (353)
Q Consensus        98 ~~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~-~~~i~~~~  176 (353)
                      ...++..                         .....+.+.|..+.|...+++....... .+|....+.. ..++..+.
T Consensus       149 ~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~~~~-~tD~~~l~~~~g~~v~~v~  202 (225)
T d1i52a_         149 HTVDRNG-------------------------LWHALTPQFFPRELLHDCLTRALNEGAT-ITDEASALEYCGFHPQLVE  202 (225)
T ss_dssp             EEECCTT-------------------------CEEEEEEEEEEHHHHHHHHHHHHHTTCC-CCSHHHHHHHTTCCCEEEE
T ss_pred             cccchHH-------------------------HHHHhhhhhhhhHHHHHHHHHHHhcCCC-CCcHHHHHHHCCCceEEEe
Confidence            2222211                         1223356777777776565543222222 3454433333 35666555


Q ss_pred             ecceEeEcCCHHHHHHHHHhh
Q 018622          177 FRDYWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       177 ~~g~w~dIgtp~~y~~a~~~l  197 (353)
                      -+..-+.|+||+|+..|+..+
T Consensus       203 ~~~~nikItt~eDl~~Ae~~l  223 (225)
T d1i52a_         203 GRADNIKVTRPEDLALAEFYL  223 (225)
T ss_dssp             CCTTCCCCCSHHHHHHHHHHH
T ss_pred             cCccccCcCCHHHHHHHHHHh
Confidence            433335699999998887544

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=91.57  E-value=0.32  Score=39.53  Aligned_cols=139  Identities=12%  Similarity=0.000  Sum_probs=73.0

Q ss_pred             cHHHHHHHHHHhhhhccCCCCeEEEEeCCeE--EecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeE
Q 018622           21 TADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ   98 (353)
Q Consensus        21 T~~al~~a~~~i~~~~~~~~~~flV~~gD~i--~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~   98 (353)
                      +.+++++++..+..    ..+.+++..||.-  ....+..+++.+...++.+  ...+..+  ...+    ...++....
T Consensus        83 r~~sv~~~l~~~~~----~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~i--~~~~~~d--~~~~----~~~~~~~~~  150 (226)
T d1w77a1          83 RQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAV--LGVPAKA--TIKE----VNSDSLVVK  150 (226)
T ss_dssp             HHHHHHHHHHTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEEE--EEEECCS--CCCC----BCTTSCBC-
T ss_pred             hhhhhhhhHhhhcc----ccccceecccccccccHHHhhhhhhhhhccCcee--ecccccc--ceEE----EccCCceee
Confidence            36788888877752    3467788889883  3345788888877776533  2222222  1111    012222222


Q ss_pred             EEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhh-hcCcEEEEEe
Q 018622           99 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIF  177 (353)
Q Consensus        99 ~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~-~~~~i~~~~~  177 (353)
                      ..++.                         ..+...+-++|+.+.|...++........ .+|....+. ...++..+.-
T Consensus       151 ~~~r~-------------------------~~~~~~~p~~f~~~~l~~~~~~~~~~~~~-~TD~~~l~~~~g~~v~~v~g  204 (226)
T d1w77a1         151 TLDRK-------------------------TLWEMQTPQVIKPELLKKGFELVKSEGLE-VTDDVSIVEYLKHPVYVSQG  204 (226)
T ss_dssp             ------------------------------CCEEEEEEEEECHHHHHHHHHHHHHSCCC-CCC-CCTTGGGSSCCEEEEC
T ss_pred             cccch-------------------------hhhHHHHHHhHhhHHHHHHHHHHHhcCCC-cCcHHHHHHHCCCceEEEEC
Confidence            11111                         12334466889988886665543222222 233222122 2356655544


Q ss_pred             cceEeEcCCHHHHHHHHHhh
Q 018622          178 RDYWEDIGTIKSFYEANMAL  197 (353)
Q Consensus       178 ~g~w~dIgtp~~y~~a~~~l  197 (353)
                      +..-+.|.+|+|+..|...|
T Consensus       205 ~~~n~KItt~eDl~~ae~lL  224 (226)
T d1w77a1         205 SYTNIKVTTPDDLLLAERIL  224 (226)
T ss_dssp             CTTCCCCCSHHHHHHHHHHH
T ss_pred             ChhhcCcCCHHHHHHHHHHh
Confidence            43335689999999997654

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=91.40  E-value=0.95  Score=36.42  Aligned_cols=121  Identities=11%  Similarity=0.049  Sum_probs=66.6

Q ss_pred             CCCeEEEEeCCe--EEecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeEEEeCCCcccccccccccc
Q 018622           39 NIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTS  116 (353)
Q Consensus        39 ~~~~flV~~gD~--i~~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~~~ekp~~~~~~~~~~~~~  116 (353)
                      ..+.+++..||.  +....+.++++.+...+...++ ..+..      ...... +++.+....++....          
T Consensus       100 ~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~-~~~~~------~~~~~~-~~~~i~~~~~r~~~~----------  161 (226)
T d1vgwa_         100 ETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL-AVPVA------DTLKRA-ESGQISATVDRSGLW----------  161 (226)
T ss_dssp             TTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEE-EEECC------SCEEEE-SSSBEEEEECCTTEE----------
T ss_pred             cccceeecccccccCcHHHHHHHHhhhcccccceee-ccccc------ccceec-cCCeEEeccchHHHH----------
Confidence            345677888875  3345578899988877765544 33322      223333 456776665544321          


Q ss_pred             ccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhh-hcCcEEEEEecceEeEcCCHHHHHHHHH
Q 018622          117 LLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANM  195 (353)
Q Consensus       117 ~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~-~~~~i~~~~~~g~w~dIgtp~~y~~a~~  195 (353)
                                    ... .-..|..+.|...+...  ...+ .+|....+. ...++..+.-+...+.|.||+|+..|..
T Consensus       162 --------------~~~-~p~~f~~~~l~~~~~~~--~~~~-~tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~  223 (226)
T d1vgwa_         162 --------------QAQ-TPQLFQAGLLHRALAAE--NLGG-ITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRL  223 (226)
T ss_dssp             --------------EEE-EEEEEEHHHHHHHHHC------C-CCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHH
T ss_pred             --------------HHH-hhhcccHHHHHHHHHHh--hcCC-CCcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHH
Confidence                          111 22466767665554432  1122 233332222 2356766665555678999999988864

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.99  E-value=0.94  Score=35.96  Aligned_cols=138  Identities=14%  Similarity=0.064  Sum_probs=79.6

Q ss_pred             cHHHHHHHHHHhhhhccCCCCeEEEEeCCeEE--ecCHHHHHHHHHHCCCcEEEEEEEeCCCCCCcceEEEECCCCCeeE
Q 018622           21 TADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ   98 (353)
Q Consensus        21 T~~al~~a~~~i~~~~~~~~~~flV~~gD~i~--~~dl~~~~~~h~~~~a~~tll~~~~~~~~~~~~g~v~~d~~g~V~~   98 (353)
                      +...++.+...+.    ...+.++++.||.-+  ..++.++++.+.+.+.+..+.+.+...  ...+..+.. +++....
T Consensus        82 ~~~~~~~~~~~~~----~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~--~~~~~~~~~-~~~~~~~  154 (225)
T d1eyra_          82 SISGVIHALETIG----SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEH--HPLKTLLQI-NNGEYAP  154 (225)
T ss_dssp             HHHHHHHHHHHHT----CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSS--CTTSCEEEC-SSSCEEE
T ss_pred             chhhccccccccc----cccceEEEeeccccccccccccccceeeccccccccceeecccc--ccccccccc-ccccccc
Confidence            4566666766665    235778999999943  346888998888888776665555442  222333443 4555544


Q ss_pred             EEeCCCccccccccccccccCCCccccccCCcccceeeEEecHHHHHHHHHhhCCCCCchhhhhhhhhhhcCcEEEEEec
Q 018622           99 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR  178 (353)
Q Consensus        99 ~~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~vl~~~l~~~~~~~~~~~~d~l~~l~~~~~i~~~~~~  178 (353)
                      +........ .+..             .......+.++|+++++.|...  .   ..       +     ..++..+.++
T Consensus       155 ~~~~~~~~~-~~~~-------------~~~~y~~~g~iy~~~~~~l~~~--~---~~-------~-----~~~~~~~~i~  203 (225)
T d1eyra_         155 MRHLSDLEQ-PRQQ-------------LPQAFRPNGAIYINDTASLIAN--N---CF-------F-----IAPTKLYIMS  203 (225)
T ss_dssp             SSCGGGGTS-CGGG-------------SCCEEEEEEEEEEEEHHHHHHH--T---SS-------C-----CSSCEEEECC
T ss_pred             ccccccccc-cccc-------------CcceeeecceeEEeeHHHHHHc--C---Cc-------c-----CCCeEEEEcC
Confidence            332211110 0000             0013466889999999987532  1   00       0     1244455553


Q ss_pred             c-eEeEcCCHHHHHHHHHh
Q 018622          179 D-YWEDIGTIKSFYEANMA  196 (353)
Q Consensus       179 g-~w~dIgtp~~y~~a~~~  196 (353)
                      . .-+||+|++||..|..-
T Consensus       204 ~~~~~dIdt~eDl~~ae~i  222 (225)
T d1eyra_         204 HQDSIDIDTELDLQQAENI  222 (225)
T ss_dssp             TTTTCCCCSHHHHHHHHHH
T ss_pred             ccceECCCCHHHHHHHHHH
Confidence            2 35799999999988643