Citrus Sinensis ID: 018632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
MQRLKISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKHV
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHccccccccccccccccEEEEEEccEEEEEEccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccEEEEEccEEEcccccccccccEEEEccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccHHHHHHHccccccccccccEEEEEEccEEEEEEccHHHHHHccHHHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccEEEccccEEEEcccEEEEEccEEEcccHHHEccccccccHHHccccccccEEEEEEccccccHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHccEEEEEEcccc
Coil and Loop (DISEMBL)
MQRLKISNISRYFNDLRALSqhrtsssvtddlCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAwendpnigfgsgrafcaggdiVSLYHFMNQGKLEECKDFFRTLYSFIYLLGthlkphvailngvtmgggagvsipgtfrvacgktvfatpetligfhpdagasfylshlpghLGEFLALTGAKLNGAEMMACGLAThysvseklPLIEEELgklvtddpsVIEACLEKYsdlvypdknsvihridivdkcfglDTVEEIIDSLESeaslindpwcgsTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRlisgdfyevsnfqilnkhv
Flexible Loop (DISEMBL)
mqrlkisnISRYFNDLRALSQhrtsssvtddlCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKvslrsiregrfqtfdeclvREYRMSLQGVSRlisgdfyevsnfqilnkhv
Low Complexity Region (SEG)
MQRLKISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKHV
Disordered region (IsUnstruct)
**********RYFNDL************TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL****
Disordered Region (DISOPRED)
*************************************VEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEK*************HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKHV
Disordered Region (DISEMBL)
MQRLKISNISRYFNDLRALS*********DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKHV
Disordered Region (DISPRO)
**************DL****************CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRLKISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
Q5XF59	401	3-hydroxyisobutyryl-CoA h	yes	no	0.917	0.807	0.682	1e-123
Q8RXN4	409	3-hydroxyisobutyryl-CoA h	no	no	0.994	0.858	0.571	1e-119
Q6NMB0	378	Probable 3-hydroxyisobuty	no	no	0.900	0.841	0.484	1e-84
Q9LKJ1	378	3-hydroxyisobutyryl-CoA h	no	no	0.875	0.817	0.479	2e-82
Q1PEY5	378	Probable 3-hydroxyisobuty	no	no	0.900	0.841	0.465	4e-79
Q9SHJ8	387	3-hydroxyisobutyryl-CoA h	no	no	0.864	0.788	0.418	7e-68
Q6NVY1	386	3-hydroxyisobutyryl-CoA h	yes	no	0.886	0.810	0.395	1e-55
Q8QZS1	385	3-hydroxyisobutyryl-CoA h	yes	no	0.875	0.802	0.376	6e-55
Q5XIE6	385	3-hydroxyisobutyryl-CoA h	yes	no	0.883	0.810	0.379	3e-54
Q5ZJ60	385	3-hydroxyisobutyryl-CoA h	yes	no	0.909	0.833	0.369	4e-53

>sp|Q5XF59|HIBC4_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=At3g60510 PE=2 SV=1

 Score =  441 bits (1133), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/328 (68%), Positives = 269/328 (82%), Gaps = 4/328 (1%)

Query: 28  VTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GS 83
            ++DL  QVLVEG   SR AILNRP ALNAL T+MG +L KL+K WE DPNIGF    GS
Sbjct: 31  TSEDLDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGS 90

Query: 84  GRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAG 143
           GRAFCAGGDIVSLYH   +G  +  ++FF +LYSFIYLLGT+LKPHVAILNGVTMGGG G
Sbjct: 91  GRAFCAGGDIVSLYHLRTRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTG 150

Query: 144 VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMA 203
           VSIPGTFRVA  +T+FATPET+IGFHPDAGASF LSHLPG LGE+L LTG KL+GAEM+A
Sbjct: 151 VSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLA 210

Query: 204 CGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF 263
           CGLATHY  SE++P++EE+L KL+TDDPSV+E+CLEK +++ +P+K  VI RID+++KCF
Sbjct: 211 CGLATHYIRSEEVPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCF 270

Query: 264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVR 323
             DTVEEIIDSLE EAS   D WC +TLR LKE+SPLSLKV+LRSIREGR QT D+CL+R
Sbjct: 271 SHDTVEEIIDSLEIEASRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIR 330

Query: 324 EYRMSLQGVSRLISGDFYEVSNFQILNK 351
           EYRMSLQG+   +SG+F E    ++++K
Sbjct: 331 EYRMSLQGLIGPMSGNFCEGVRARLIDK 358

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q8RXN4|HIBC5_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1

 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/362 (57%), Positives = 277/362 (76%), Gaps = 11/362 (3%)

Query: 1   MQRLK-ISNISRYFNDLRALSQHRTSSSVTD------DLCNQVLVEGKANSRMAILNRPS 53
           MQ +K +  +S     +R++S  R  S++ +      D  +QVLVEGKA SR AILN PS
Sbjct: 1   MQTVKALRRVSEPLQWVRSVSYGRRFSALPNYSASDADFEDQVLVEGKAKSRAAILNNPS 60

Query: 54  ALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK 109
           +LNAL+  M  +L +L+++WE +P I F    GSG+ FC+G D++SLYH +N+G  EE K
Sbjct: 61  SLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLSLYHSINEGNTEESK 120

Query: 110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH 169
            FF  LY F+YL GT+LKP++AI++GVTMG G G+S+PG FRVA  KTV A PE  IGFH
Sbjct: 121 LFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMFRVATDKTVLAHPEVQIGFH 180

Query: 170 PDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD 229
           PDAGAS+YLS LPG+LGE+LALTG KLNG EM+ACGLATHY ++ +LPLIEE +GKL+TD
Sbjct: 181 PDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERIGKLLTD 240

Query: 230 DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGS 289
           DP+VIE  L +Y DLVYPD +SV+H+I+++DK FGLDTVEEII+++E+EA+   + WC  
Sbjct: 241 DPAVIEDSLAQYGDLVYPDSSSVLHKIELIDKYFGLDTVEEIIEAMENEAANSCNEWCKK 300

Query: 290 TLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL 349
           TL+ +KEASPLSLK++L+SIREGRFQT D+CL  EYR+S+ GVS+++SGDF E    +++
Sbjct: 301 TLKQIKEASPLSLKITLQSIREGRFQTLDQCLTHEYRISICGVSKVVSGDFCEGIRARLV 360

Query: 350 NK 351
           +K
Sbjct: 361 DK 362

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NMB0|HIBC3_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 3 OS=Arabidopsis thaliana GN=At2g30660 PE=2 SV=1

 Score =  313 bits (802), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 156/322 (48%), Positives = 213/322 (66%), Gaps = 4/322 (1%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCA 89
           +QVLVE K++ R+  LNRP  LNAL  NM ++L +LF+A+E DP++      G GRAFCA
Sbjct: 5   SQVLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCA 64

Query: 90  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 149
           GGD+  +   M QGK     DFFR  Y+  Y++ T+ KP V+ILNG+ MG GAGVSI G 
Sbjct: 65  GGDVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGR 124

Query: 150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 209
           FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAE++ACGLATH
Sbjct: 125 FRIATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLATH 184

Query: 210 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 269
           +  S +L  +E +L K+ + DPS +   L+ Y+   +  + S  HR+D++D+CF   T+E
Sbjct: 185 FVPSTRLTALETDLCKVGSSDPSFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFSKRTME 244

Query: 270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 329
           EII +LE E +   D W  +T+R LK++SP SLK+SLRSIREGR Q    CL REYRM  
Sbjct: 245 EIISALERETTQELDDWSLTTIRALKKSSPSSLKISLRSIREGRLQGVGHCLTREYRMVC 304

Query: 330 QGVSRLISGDFYEVSNFQILNK 351
             +   +S D  E     +++K
Sbjct: 305 HVMKGDLSKDLVEGCRAILIDK 326

Involved in valine catabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1

 Score =  306 bits (783), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/313 (47%), Positives = 210/313 (67%), Gaps = 4/313 (1%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCA 89
           +QVLVE K++ R+  LNRP  LNAL+ +M ++L +LF A+E DP++      G GRAFCA
Sbjct: 9   SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68

Query: 90  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 149
           GGD+ ++   +NQG      ++F + Y   Y++ T+ K  V+ILNG+ MGGGAGVS+ G 
Sbjct: 69  GGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128

Query: 150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 209
           FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 129 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 188

Query: 210 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 269
           +  S +L  +E +L ++ ++DP+     L+ Y+      + S   R+D++D+CF   TVE
Sbjct: 189 FVPSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCFSRRTVE 248

Query: 270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 329
           EII +LE EA+   D W  +T++ LK+ SP SLK+SLRSIREGR Q   +CL+REYRM  
Sbjct: 249 EIISALEREATQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIREYRMVC 308

Query: 330 QGVSRLISGDFYE 342
             +   IS DF E
Sbjct: 309 HVMKGEISKDFVE 321

Involved in valine catabolism. May be indirectly involved in benzoic acid biosynthesis and in cold signaling and cold tolerance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q1PEY5|HIBC2_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 2 OS=Arabidopsis thaliana GN=At2g30650 PE=2 SV=1

 Score =  295 bits (755), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 150/322 (46%), Positives = 213/322 (66%), Gaps = 4/322 (1%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCA 89
           +QVLVE K++ R+   NRP  LNAL+ +M ++L +LF A+E DP++      G GRAF A
Sbjct: 5   SQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSA 64

Query: 90  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 149
           GGDI  +   + QGKL     +F+  Y+  Y+L T+ KP V+ILNG+ MGGGAG+S  G 
Sbjct: 65  GGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGR 124

Query: 150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 209
           FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 125 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 184

Query: 210 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 269
           +  S  L  +E EL K+ + + + I   L+ Y++  + +++S  HR+D++D+CF   TVE
Sbjct: 185 FVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVE 244

Query: 270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 329
           EI  +LE E +   + W  +T++ L++ASP  LK+SLRSIREGR Q   +CL+REYRM  
Sbjct: 245 EIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVC 304

Query: 330 QGVSRLISGDFYEVSNFQILNK 351
             +   IS DF E     +++K
Sbjct: 305 HVMKGDISKDFVEGCRAVLIDK 326

Involved in valine catabolism.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q9SHJ8|HIBC8_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 OS=Arabidopsis thaliana GN=At1g06550 PE=2 SV=2

 Score =  258 bits (658), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 130/311 (41%), Positives = 195/311 (62%), Gaps = 6/311 (1%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           V+ E K + R+  LNRP  LN ++  +  KL +  + WE D         G+GRAF AGG
Sbjct: 13  VIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFSAGG 72

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           D+   YH   Q   + C +    +Y   Y + T+ K  V+++NG++MGGGA + +P  F 
Sbjct: 73  DLKVFYH--GQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPMKFS 130

Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 211
           V   KTVFATPE   GFH D G S+  S LPGHLGEFLALTGA+LNG E++A G+ATH+ 
Sbjct: 131 VVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGMATHFV 190

Query: 212 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 271
            S KL  +E  L  L + D  V+++ +E++S+ V  DK+S++++  ++++CF  ++V++I
Sbjct: 191 PSGKLMDLEARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKESVKQI 250

Query: 272 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQG 331
           I + E+EAS   + W    ++ LK +SP  LK+ L+SIREGR QT  +CL +E+R++L  
Sbjct: 251 IQAFEAEASKDGNEWITPVIKGLKRSSPTGLKIVLQSIREGRKQTLSDCLKKEFRLTLNI 310

Query: 332 VSRLISGDFYE 342
           + + IS D YE
Sbjct: 311 LRKTISPDMYE 321

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NVY1|HIBCH_HUMAN 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2

 Score =  217 bits (553), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/329 (39%), Positives = 185/329 (56%), Gaps = 16/329 (4%)

Query: 22  HRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--- 78
           H    S   D   +VL+E K  + +  LNRP  LNAL  NM  ++    K WE DP    
Sbjct: 24  HHLRMSKHTDAAEEVLLEKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFL 83

Query: 79  --IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV 136
             I    G+AFCAGGDI  +     + K +    FFR  Y     +G+  KP+VA+++G+
Sbjct: 84  IIIKGAGGKAFCAGGDIRVISE-AEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGI 142

Query: 137 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL 196
           TMGGG G+S+ G FRVA  K +FA PET IG  PD G  ++L  L G LG FLALTG +L
Sbjct: 143 TMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRL 202

Query: 197 NGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SDLVYPDKNSVIH 254
            G ++   G+ATH+  SEKL ++EE+L  L +     I + LE Y     +  DK+ ++ 
Sbjct: 203 KGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILE 262

Query: 255 R-IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGR 313
             +D ++ CF  +TVEEII++L+ + S     +    L+++ + SP SLK++LR + EG 
Sbjct: 263 EHMDKINSCFSANTVEEIIENLQQDGS----SFALEQLKVINKMSPTSLKITLRQLMEGS 318

Query: 314 FQTFDECLVREYRMSLQGVSRLISGDFYE 342
            +T  E L  EYR+S Q   R    DF+E
Sbjct: 319 SKTLQEVLTMEYRLS-QACMR--GHDFHE 344

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q8QZS1|HIBCH_MOUSE 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1

 Score =  214 bits (546), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 122/324 (37%), Positives = 183/324 (56%), Gaps = 15/324 (4%)

Query: 13  FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
           F     + QH   S  T+    +VL+E +    +  LNRP  LNAL+ NM  ++    K 
Sbjct: 16  FRRASVILQHLRMSMHTE--AAEVLLERRGCGGVITLNRPKFLNALSLNMIRQIYPQLKT 73

Query: 73  WENDPN-----IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 127
           WE DP+     I    G+AFCAGGDI +L     + +    +D FR  Y     + +  K
Sbjct: 74  WEQDPDTFLIIIKGAGGKAFCAGGDIKALSE-AKKARQNLTQDLFREEYILNNAIASCQK 132

Query: 128 PHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 187
           P+VA+++G+TMGGG G+S+ G FRVA  +++FA PET IG  PD G  ++L  L G LG 
Sbjct: 133 PYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGY 192

Query: 188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYP 247
           FLALTG +L G ++   G+ATH+  SEKL ++EEEL  L +     +   LE Y      
Sbjct: 193 FLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLESYHAKSKM 252

Query: 248 DKNSVI---HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKV 304
           D++  I     +D ++ CF  +TVE+II++L  + S    P+    ++++ + SP SLK+
Sbjct: 253 DQDKSIIFEEHMDKINSCFSANTVEQIIENLRQDGS----PFAIEQMKVINKMSPTSLKI 308

Query: 305 SLRSIREGRFQTFDECLVREYRMS 328
           +LR + EG  +T  E L+ EYR++
Sbjct: 309 TLRQLMEGSSKTLQEVLIMEYRIT 332

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5XIE6|HIBCH_RAT 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/329 (37%), Positives = 189/329 (57%), Gaps = 17/329 (5%)

Query: 10  SRYFNDLRA--LSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLN 67
           SR+ +  RA  + QH   S  T+    +VL+E +  + +  LNRP  LNAL+ NM  ++ 
Sbjct: 11  SRFSSIRRASVILQHLRMSKHTE--TAEVLLERRGCAGVITLNRPKLLNALSLNMIRQIY 68

Query: 68  KLFKAWENDPN-----IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL 122
              K WE DP+     I    G+AFCAGGDI +L      G+    +D FR  Y     +
Sbjct: 69  PQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQ-TLSQDLFREEYILNNAI 127

Query: 123 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 182
            +  KP+VA+++G+TMGGG G+S+ G FRVA  +++FA PET IG  PD G  ++L  L 
Sbjct: 128 ASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQ 187

Query: 183 GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY- 241
           G LG FLALTG +L G ++   G+ATH+  SEKL ++EEEL  L +     +   LE Y 
Sbjct: 188 GKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLESYH 247

Query: 242 -SDLVYPDKNSVIHR-IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASP 299
               +  DK+ +    +D ++ CF  +TVE+I+++L  + S    P+    ++++ + SP
Sbjct: 248 AKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLRQDGS----PFAMEQIKVINKMSP 303

Query: 300 LSLKVSLRSIREGRFQTFDECLVREYRMS 328
            SLK++LR + EG  +T  E L  EYR++
Sbjct: 304 TSLKITLRQLMEGSTKTLQEVLTMEYRLT 332

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

>sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1

 Score =  209 bits (531), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 186/338 (55%), Gaps = 17/338 (5%)

Query: 13  FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
           FN L+ + QH  +   TD   + VL++ +  + +  LNRP  LNAL+  M  ++    KA
Sbjct: 15  FNRLQVILQHLKTCKHTDSAAD-VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKA 73

Query: 73  WENDPN----IGFGSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 127
           WE DP     I  G+G +AFCAGGD+ ++      G     +D+FR  Y     +GT  K
Sbjct: 74  WEQDPETFLIIIKGTGEKAFCAGGDVRAIADAGKAGD-TMTRDYFREEYRLDNAIGTCKK 132

Query: 128 PHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 187
           P+VA+++G+TMGGG G+S+ G FRVA  KTVFA PET IG  PD G  ++L  L G +G 
Sbjct: 133 PYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGH 192

Query: 188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYP 247
            LALTG +L G +++  G+ATH+  S KLP +E++L  L +     I   L  Y      
Sbjct: 193 LLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQTKI 252

Query: 248 DKNS---VIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKV 304
           D+     +   ++ ++  F  +++EEI+  L+ + S    P+    L  + + SP SLK+
Sbjct: 253 DQEKEFVLDEHMERINSIFSANSMEEIVQKLKQDGS----PFATKQLEAINKMSPTSLKL 308

Query: 305 SLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 342
           +LR +REG   +  +    EYR+S Q   R    DFYE
Sbjct: 309 TLRQLREGATMSLQDVFTMEYRLS-QACMR--GHDFYE 343

Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
255541138	415	catalytic, putative [Ricinus communis] g	0.929	0.790	0.743	1e-145
224136292	415	predicted protein [Populus trichocarpa]	0.940	0.8	0.743	1e-137
356504605	407	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.900	0.781	0.720	1e-137
357512815	401	3-hydroxyisobutyryl-CoA hydrolase-like p	0.949	0.835	0.672	1e-135
225453474	405	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.988	0.861	0.650	1e-130
449442604	406	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.994	0.864	0.659	1e-130
225430480	407	PREDICTED: 3-hydroxyisobutyryl-CoA hydro	0.943	0.818	0.637	1e-126
326507476	424	predicted protein [Hordeum vulgare subsp	0.951	0.792	0.637	1e-125
357512817	378	3-hydroxyisobutyryl-CoA hydrolase-like p	0.895	0.835	0.651	1e-125
242035143	406	hypothetical protein SORBIDRAFT_01g02960	0.900	0.783	0.664	1e-124

>gi|255541138|ref|XP_002511633.1| catalytic, putative [Ricinus communis] gi|223548813|gb|EEF50302.1| catalytic, putative [Ricinus communis]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/332 (74%), Positives = 291/332 (87%), Gaps = 4/332 (1%)

Query: 24  TSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF-- 81
           ++S+  DDL  QVLVE KA SR AILNRPSALNALNTNMGA+L KL+K+WE +P++GF  
Sbjct: 37  SNSTDDDDLDKQVLVESKAYSRTAILNRPSALNALNTNMGARLLKLYKSWEENPDVGFVM 96

Query: 82  --GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMG 139
             GSGRAFCAGGDIV+LY+ + +GKLE+CK+FFRTLY+FIY+LGT+LKPHVAIL+G+TMG
Sbjct: 97  MKGSGRAFCAGGDIVTLYNLVKKGKLEDCKEFFRTLYTFIYILGTYLKPHVAILDGITMG 156

Query: 140 GGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA 199
           GGAGVSIPGTFR+A  KTVFATPETLIGFHPDAGASF+LSHLPGHLGE+LALTG  LNG 
Sbjct: 157 GGAGVSIPGTFRIATDKTVFATPETLIGFHPDAGASFHLSHLPGHLGEYLALTGETLNGV 216

Query: 200 EMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV 259
           EM+ACGLATHYS SE+L LI+++LG+LVTDDPSVIEA LEKY DLV+PDK S +HRI+ V
Sbjct: 217 EMIACGLATHYSYSERLQLIDQQLGQLVTDDPSVIEATLEKYGDLVHPDKMSALHRIETV 276

Query: 260 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDE 319
           D+CFG DTVEEI ++LESEAS  ND +C STLR LKEASPLSLKVSLRSIREGRFQT D+
Sbjct: 277 DRCFGYDTVEEIFEALESEASGTNDAFCNSTLRRLKEASPLSLKVSLRSIREGRFQTLDQ 336

Query: 320 CLVREYRMSLQGVSRLISGDFYEVSNFQILNK 351
           CLVREYRMSLQG+S+ IS DFYE    +++++
Sbjct: 337 CLVREYRMSLQGISKQISNDFYEGVRARMVDR 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136292|ref|XP_002326825.1| predicted protein [Populus trichocarpa] gi|222835140|gb|EEE73575.1| predicted protein [Populus trichocarpa]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/339 (74%), Positives = 287/339 (84%), Gaps = 7/339 (2%)

Query: 17  RALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWEND 76
           R+LS   +S    DDL NQVLVE KANSR AILNRPSALNALNTNMGA+L KL+KAWE D
Sbjct: 36  RSLS---SSPPTEDDLDNQVLVEDKANSRSAILNRPSALNALNTNMGARLLKLYKAWEKD 92

Query: 77  PNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI 132
            ++GF    GSGRAF AGGDIV+LYH +NQGK E C++FF TLY+FIY+LGT+LKPHVAI
Sbjct: 93  SSVGFVTLKGSGRAFSAGGDIVNLYHLINQGKWEACREFFGTLYTFIYVLGTYLKPHVAI 152

Query: 133 LNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALT 192
           LNG+TMGGG G+SIPGTFR+A  KTVFATPETLIGFHPDAGASF+LSHLPGHLGE+LALT
Sbjct: 153 LNGITMGGGTGISIPGTFRLATDKTVFATPETLIGFHPDAGASFFLSHLPGHLGEYLALT 212

Query: 193 GAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSV 252
           G  LNGAEM+ACGLATHY+ SEKL L+E  LGKLVTDDPSVIE  LE+Y DLVYPDK SV
Sbjct: 213 GGTLNGAEMIACGLATHYTNSEKLHLVEHHLGKLVTDDPSVIETSLEQYGDLVYPDKMSV 272

Query: 253 IHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREG 312
           +HRI++VDKCF  DTVEEI D+LE EA+  ND W  STLR LKEASPLSLKVSLRSI+EG
Sbjct: 273 LHRIEMVDKCFSHDTVEEIFDALEREAAETNDAWFNSTLRRLKEASPLSLKVSLRSIQEG 332

Query: 313 RFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 351
           RFQT D+CLVREYRMSLQG+S+ ISGDF E    ++++K
Sbjct: 333 RFQTLDQCLVREYRMSLQGISKQISGDFCEGVRARMVDK 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504605|ref|XP_003521086.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Glycine max]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/322 (72%), Positives = 274/322 (85%), Gaps = 4/322 (1%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCA 89
           NQVLVEG   SRMAILNRPSALNALNTNM A L+KL+++WE DP+IGF    GSGRAF A
Sbjct: 42  NQVLVEGNGFSRMAILNRPSALNALNTNMAATLHKLYRSWEEDPDIGFVMLKGSGRAFAA 101

Query: 90  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 149
           GGDIV+LYH +N+G LE CK+FFRT YSF+YL+GT+LKPHVA+LNG+TMGGGAG+SIPGT
Sbjct: 102 GGDIVALYHLINKGNLEACKEFFRTAYSFMYLIGTYLKPHVALLNGITMGGGAGISIPGT 161

Query: 150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 209
           FRVA  KT+FATPE LIGFHPDA ASFYLSHLPG LGE+LALTG KLNG EM+ACGLATH
Sbjct: 162 FRVATDKTIFATPEVLIGFHPDAAASFYLSHLPGQLGEYLALTGEKLNGVEMVACGLATH 221

Query: 210 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 269
           YS S +LPLIEE+LGKLVTDDPSVIE  LE+Y ++V+ D +SV+ RI+++DKCF  DTVE
Sbjct: 222 YSSSARLPLIEEQLGKLVTDDPSVIETTLEQYGEIVHLDSSSVLQRIEVLDKCFCHDTVE 281

Query: 270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 329
           EI+D++E+ AS  ND WC STL  LKEASPLSLKV+LRSIREGRFQT D+CL+REYRM+L
Sbjct: 282 EIVDAMENAASETNDAWCISTLNKLKEASPLSLKVALRSIREGRFQTLDQCLLREYRMTL 341

Query: 330 QGVSRLISGDFYEVSNFQILNK 351
           Q + R ISGDF E    ++++K
Sbjct: 342 QAIHRQISGDFCEGVRARVVDK 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512815|ref|XP_003626696.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula] gi|355520718|gb|AET01172.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/348 (67%), Positives = 280/348 (80%), Gaps = 13/348 (3%)

Query: 17  RALSQHRTSSSVTDDLCN---------QVLVEGKANSRMAILNRPSALNALNTNMGAKLN 67
           R+L   R S  +T  L N          VLVEG   SR+A+LNRPS+LNA+NTNM A+L+
Sbjct: 10  RSLLMQRNSRRLTTTLSNSVDHHLLQDNVLVEGNGYSRLALLNRPSSLNAINTNMAARLH 69

Query: 68  KLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLG 123
           KL+++WE++P+IGF    G+GRAF AGGDIVSLY F+ QG LE CK FFRT YSFIYL+G
Sbjct: 70  KLYRSWEDNPDIGFVMLKGTGRAFAAGGDIVSLYRFIKQGNLEACKQFFRTAYSFIYLIG 129

Query: 124 THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 183
           T+LKPHVA+LNG+TMGGGAG+SIPGTFR+A  KTVFATPE LIGFHPDA ASFYLS LPG
Sbjct: 130 TYLKPHVALLNGITMGGGAGISIPGTFRLATDKTVFATPEVLIGFHPDAAASFYLSRLPG 189

Query: 184 HLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSD 243
           H+GE+LALTG KLNG EM+ACGLATHYS+  +LPLIEE+LGKLVTDDPSVIE  LE+Y D
Sbjct: 190 HIGEYLALTGEKLNGVEMVACGLATHYSLLARLPLIEEQLGKLVTDDPSVIETTLEQYGD 249

Query: 244 LVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLK 303
           LV+P  +SV+ R++I+DKCFG DTVEEI+D+LE  A    D WC STL  LKEASPLSLK
Sbjct: 250 LVHPGSSSVLQRLEILDKCFGHDTVEEIVDALEVAAGQTKDAWCISTLNRLKEASPLSLK 309

Query: 304 VSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 351
           VSLRSIREGRFQT D+CL+REYRM+LQ +S+ ISGDF E    ++++K
Sbjct: 310 VSLRSIREGRFQTLDQCLLREYRMTLQAISKQISGDFCEGVRARVVDK 357

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453474|ref|XP_002274299.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial [Vitis vinifera] gi|297734569|emb|CBI16620.3| unnamed protein product [Vitis vinifera]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/363 (65%), Positives = 286/363 (78%), Gaps = 14/363 (3%)

Query: 1   MQRLKISNISRYFNDLRAL---SQHRTSSSV-----TDDLCNQVLVEGKANSRMAILNRP 52
           MQ LK+  + R  + +R+    + HR  S V      +D  ++VLVEG+  SR AILNRP
Sbjct: 1   MQSLKV--LWRRRSGIRSPPFPTHHRAFSYVPNPAAANDFDSEVLVEGEGCSRTAILNRP 58

Query: 53  SALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC 108
             LNALNT+MGA+L  L+K+WE +P+IGF    GSGRAFCAGGDIV LY+ +N+G++E+C
Sbjct: 59  HVLNALNTSMGARLQNLYKSWEENPDIGFVVMKGSGRAFCAGGDIVGLYNLINKGRIEDC 118

Query: 109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF 168
           K+FF T+YSFIYL+GT+LKP+VAIL+G+TMGGGAGVSIPG FRVA  +TVFATPETLIGF
Sbjct: 119 KEFFGTVYSFIYLVGTYLKPNVAILDGITMGGGAGVSIPGMFRVATDRTVFATPETLIGF 178

Query: 169 HPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVT 228
           H DAGASF+LSHLPG+ GE+LALTG KLNG EM+ACGLATHY+ S KLPLIEE LGKLVT
Sbjct: 179 HTDAGASFHLSHLPGYWGEYLALTGEKLNGPEMIACGLATHYAPSAKLPLIEEGLGKLVT 238

Query: 229 DDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCG 288
           DDPSVIEA LE+Y  L+ PD   ++ RI+ +DKCF   TVEEIID+LESE +   DPWC 
Sbjct: 239 DDPSVIEASLEQYGSLISPDNRGLLQRIETLDKCFSHGTVEEIIDALESETARTQDPWCS 298

Query: 289 STLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 348
           STL+ LKEASPLSLKV LRSIREGRFQT D+CLVREYRMS+QG+S  IS DF E    ++
Sbjct: 299 STLKRLKEASPLSLKVCLRSIREGRFQTLDQCLVREYRMSVQGISGQISNDFCEGIRARM 358

Query: 349 LNK 351
           + K
Sbjct: 359 VEK 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442604|ref|XP_004139071.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Cucumis sativus]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/361 (65%), Positives = 291/361 (80%), Gaps = 10/361 (2%)

Query: 1   MQRLKISNISRY-FNDLRALSQHRTSSSVTD-----DLCNQVLVEGKANSRMAILNRPSA 54
           +Q LK++  +R     +R L+Q R   S+ D     D   +VLVEG+A SR AILNRPS 
Sbjct: 2   VQSLKVALFTRRSLQTIRLLTQTRNQCSLLDHSSDHDHEQEVLVEGRAWSRTAILNRPSI 61

Query: 55  LNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKD 110
           LNALNTNMGA+L++L+ +WE +P++GF    GSGRAFCAGGDIVSLYH +N+G++E CK 
Sbjct: 62  LNALNTNMGARLHELYNSWEENPDVGFVVLKGSGRAFCAGGDIVSLYHMINEGEIEHCKK 121

Query: 111 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP 170
           FF TLY+FIY++GT+LKPHVAILNG+TMGGG G+SIPGTFRVA  KTVFATPETLIGFHP
Sbjct: 122 FFSTLYAFIYMVGTYLKPHVAILNGITMGGGTGISIPGTFRVATDKTVFATPETLIGFHP 181

Query: 171 DAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDD 230
           DAGASF+LSHLPG +GE+L LTG KL G EM+ACG+ATHYS S +LPLIEE LG LVTDD
Sbjct: 182 DAGASFHLSHLPGRMGEYLGLTGEKLKGEEMVACGVATHYSHSSRLPLIEEHLGNLVTDD 241

Query: 231 PSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGST 290
            S++E+ L K+ D V+ DK SV+HRI+I+DKCF  DTVEEIIDSLE E+S   DPWC ST
Sbjct: 242 ASIVESSLNKFGDRVHLDKTSVLHRIEILDKCFSHDTVEEIIDSLEIESSKTKDPWCIST 301

Query: 291 LRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN 350
           L+ LKEASPLSLKVSL+SIREGR+QT D+CL+REYRMSLQG+S+ IS DF E    ++++
Sbjct: 302 LKRLKEASPLSLKVSLKSIREGRYQTLDQCLIREYRMSLQGISKQISSDFCEGVRARLVD 361

Query: 351 K 351
           K
Sbjct: 362 K 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430480|ref|XP_002283319.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Vitis vinifera] gi|296082135|emb|CBI21140.3| unnamed protein product [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/342 (63%), Positives = 273/342 (79%), Gaps = 9/342 (2%)

Query: 19  LSQHRTSSSV-----TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAW 73
            S HR+ S++      DDL  QVLVEG+A SR AILNRPS LNAL   M A+L +L+++W
Sbjct: 22  FSHHRSFSALPNYARNDDLQEQVLVEGRAKSRAAILNRPSDLNALTIPMVARLKRLYESW 81

Query: 74  ENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPH 129
           E + ++GF    GSGRA C+GGD+V+L   +N+GK+EECK FF TLY F+YLLGT++KP+
Sbjct: 82  EENSDLGFVIMKGSGRALCSGGDVVALNQLINEGKVEECKKFFETLYKFVYLLGTYVKPN 141

Query: 130 VAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL 189
           VAI++G+TMGGGAG+SIP  FRV   KTVFATPET +GFHPDAGASFYLS LPG+LGE+L
Sbjct: 142 VAIVDGITMGGGAGISIPAMFRVVTDKTVFATPETQMGFHPDAGASFYLSRLPGYLGEYL 201

Query: 190 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDK 249
           ALTG KLNG EM+ACGLATHYS++ +LPLIEE LGKL+TDDPSVIE+ LE+Y DLVYPDK
Sbjct: 202 ALTGEKLNGVEMIACGLATHYSLTARLPLIEERLGKLITDDPSVIESSLEQYGDLVYPDK 261

Query: 250 NSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSI 309
            SV+H+I+ +DKCF  DTVEEII++LE+EAS   D W  + L+ LKEASPLSLKV+LRSI
Sbjct: 262 RSVLHKIETIDKCFCHDTVEEIINALENEASSSYDEWSATALKKLKEASPLSLKVTLRSI 321

Query: 310 REGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 351
           REGRFQ  D+CL REYR+SL G+++ +S DF E    + ++K
Sbjct: 322 REGRFQPLDQCLAREYRISLVGITKWVSDDFCEGVRARFVDK 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326507476|dbj|BAK03131.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/345 (63%), Positives = 277/345 (80%), Gaps = 9/345 (2%)

Query: 11  RYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLF 70
           RY + LR      + ++      ++VLVEGKA++R ++LNRP  LNAL T MGA+LNK +
Sbjct: 41  RYLSSLRP-----SPATPAAHDSDEVLVEGKASARASVLNRPGHLNALTTTMGARLNKFY 95

Query: 71  KAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL 126
           ++WE+ P+IGF    GSGRAFCAGGD+V L   +N+GKL+E KDFFRTLYSFIY+LGT+L
Sbjct: 96  ESWEDSPDIGFVMMKGSGRAFCAGGDVVGLRQLINEGKLDESKDFFRTLYSFIYVLGTYL 155

Query: 127 KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG 186
           KPHVAIL+GVTMGGG GVSIPGTFRVA  +TVFATPE  IGFHPDA ASFYLSHL GH+G
Sbjct: 156 KPHVAILDGVTMGGGGGVSIPGTFRVATDRTVFATPEVHIGFHPDAAASFYLSHLTGHVG 215

Query: 187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVY 246
           E+LALTG KLNG +M+A GLATHYS+S+ L L++E L KLVTDDPSVI++ L +Y DLVY
Sbjct: 216 EYLALTGEKLNGVDMLALGLATHYSMSDHLDLVDERLAKLVTDDPSVIDSSLAQYGDLVY 275

Query: 247 PDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSL 306
           PDK S++HR+ ++DKCF  +TVEEI+D+LESEA+ +N+ WC   L+ LKEASPL+LKVSL
Sbjct: 276 PDKTSIVHRLAVIDKCFSHETVEEIVDALESEAAQLNEEWCTLALKRLKEASPLALKVSL 335

Query: 307 RSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 351
           RSIREGR+QT DECLVREYRMS+ G+S+ +  DF E    ++++K
Sbjct: 336 RSIREGRYQTLDECLVREYRMSVNGISKPLYHDFCEGVRARLVDK 380

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512817|ref|XP_003626697.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula] gi|355520719|gb|AET01173.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/344 (65%), Positives = 262/344 (76%), Gaps = 28/344 (8%)

Query: 17  RALSQHRTSSSVTDDLCN---------QVLVEGKANSRMAILNRPSALNALNTNMGAKLN 67
           R+L   R S  +T  L N          VLVEG   SR+A+LNRPS+LNA+NTNMG    
Sbjct: 10  RSLLMQRNSRRLTTTLSNSVDHHLLQDNVLVEGNGYSRLALLNRPSSLNAINTNMG---- 65

Query: 68  KLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 127
                          +GRAF AGGDIVSLY F+ QG LE CK FFRT YSFIYL+GT+LK
Sbjct: 66  ---------------TGRAFAAGGDIVSLYRFIKQGNLEACKQFFRTAYSFIYLIGTYLK 110

Query: 128 PHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 187
           PHVA+LNG+TMGGGAG+SIPGTFR+A  KTVFATPE LIGFHPDA ASFYLS LPGH+GE
Sbjct: 111 PHVALLNGITMGGGAGISIPGTFRLATDKTVFATPEVLIGFHPDAAASFYLSRLPGHIGE 170

Query: 188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYP 247
           +LALTG KLNG EM+ACGLATHYS+  +LPLIEE+LGKLVTDDPSVIE  LE+Y DLV+P
Sbjct: 171 YLALTGEKLNGVEMVACGLATHYSLLARLPLIEEQLGKLVTDDPSVIETTLEQYGDLVHP 230

Query: 248 DKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLR 307
             +SV+ R++I+DKCFG DTVEEI+D+LE  A    D WC STL  LKEASPLSLKVSLR
Sbjct: 231 GSSSVLQRLEILDKCFGHDTVEEIVDALEVAAGQTKDAWCISTLNRLKEASPLSLKVSLR 290

Query: 308 SIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 351
           SIREGRFQT D+CL+REYRM+LQ +S+ ISGDF E    ++++K
Sbjct: 291 SIREGRFQTLDQCLLREYRMTLQAISKQISGDFCEGVRARVVDK 334

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242035143|ref|XP_002464966.1| hypothetical protein SORBIDRAFT_01g029600 [Sorghum bicolor] gi|241918820|gb|EER91964.1| hypothetical protein SORBIDRAFT_01g029600 [Sorghum bicolor]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/322 (66%), Positives = 266/322 (82%), Gaps = 4/322 (1%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCA 89
           ++VLVEGKA +R A+LNRP  LNAL T MGA+LNK +++WE++P+IGF    GSGRAFCA
Sbjct: 41  DEVLVEGKATARAAVLNRPGYLNALTTTMGARLNKFYESWEDNPDIGFVMMKGSGRAFCA 100

Query: 90  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 149
           GGD+V L   +++GKLEECKDFF+TLY FIY LGT+LKPH+AIL+GVTMGGG GVSIPGT
Sbjct: 101 GGDVVRLRELISEGKLEECKDFFKTLYMFIYFLGTYLKPHIAILDGVTMGGGGGVSIPGT 160

Query: 150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 209
           FR+A  +TVFATPE  IGFHPDA ASFYLSHL GH+GE++ALTG KLNG +M+A GLATH
Sbjct: 161 FRIATDRTVFATPEVHIGFHPDAAASFYLSHLTGHVGEYVALTGEKLNGTDMIALGLATH 220

Query: 210 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 269
           YS+S  L LI+E L KLVTDDPSVI++ L +Y D+VYPDK S++HR++++DKCF  DTVE
Sbjct: 221 YSMSGHLDLIDERLAKLVTDDPSVIDSSLAQYGDMVYPDKESIVHRLEVIDKCFSHDTVE 280

Query: 270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 329
           EI+D+LESEA+  N+ WC   L+ LKEASPL+LKVSLRSIREGR+QT DECLVREYRMS+
Sbjct: 281 EIVDALESEAASSNEEWCTLALKRLKEASPLALKVSLRSIREGRYQTLDECLVREYRMSM 340

Query: 330 QGVSRLISGDFYEVSNFQILNK 351
            G+S+  S +F E    +++ K
Sbjct: 341 NGISKQFSHEFCEGVRARLVEK 362

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2116797	409	AT4G31810 [Arabidopsis thalian	0.994	0.858	0.577	9e-109
TAIR|locus:2054437	378	AT2G30660 [Arabidopsis thalian	0.900	0.841	0.484	3.9e-76
TAIR|locus:2152069	378	CHY1 "beta-hydroxyisobutyryl-C	0.875	0.817	0.479	2.5e-74
TAIR|locus:2054517	378	AT2G30650 [Arabidopsis thalian	0.900	0.841	0.465	2.5e-72
TAIR|locus:2009180	387	AT1G06550 [Arabidopsis thalian	0.864	0.788	0.418	5.4e-63
UNIPROTKB|Q6NVY1	386	HIBCH "3-hydroxyisobutyryl-CoA	0.946	0.865	0.382	8.9e-54
RGD|1308392	385	Hibch "3-hydroxyisobutyryl-CoA	0.940	0.862	0.369	5.6e-52
MGI|MGI:1923792	385	Hibch "3-hydroxyisobutyryl-Coe	0.949	0.870	0.367	7.2e-52
FB|FBgn0038326	386	CG5044 [Drosophila melanogaste	0.861	0.787	0.385	9.2e-52
UNIPROTKB|Q5ZJ60	385	HIBCH "3-hydroxyisobutyryl-CoA	0.929	0.851	0.366	1.5e-51

TAIR|locus:2116797 AT4G31810 [Arabidopsis thaliana (taxid:3702)]

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 209/362 (57%), Positives = 277/362 (76%)

Query:     1 MQRLK-ISNISRYFNDLRALSQHRTSS-----SVTD-DLCNQVLVEGKANSRMAILNRPS 53
             MQ +K +  +S     +R++S  R  S     S +D D  +QVLVEGKA SR AILN PS
Sbjct:     1 MQTVKALRRVSEPLQWVRSVSYGRRFSALPNYSASDADFEDQVLVEGKAKSRAAILNNPS 60

Query:    54 ALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK 109
             +LNAL+  M  +L +L+++WE +P I F    GSG+ FC+G D++SLYH +N+G  EE K
Sbjct:    61 SLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLSLYHSINEGNTEESK 120

Query:   110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH 169
              FF  LY F+YL GT+LKP++AI++GVTMG G G+S+PG FRVA  KTV A PE  IGFH
Sbjct:   121 LFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMFRVATDKTVLAHPEVQIGFH 180

Query:   170 PDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD 229
             PDAGAS+YLS LPG+LGE+LALTG KLNG EM+ACGLATHY ++ +LPLIEE +GKL+TD
Sbjct:   181 PDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERIGKLLTD 240

Query:   230 DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGS 289
             DP+VIE  L +Y DLVYPD +SV+H+I+++DK FGLDTVEEII+++E+EA+   + WC  
Sbjct:   241 DPAVIEDSLAQYGDLVYPDSSSVLHKIELIDKYFGLDTVEEIIEAMENEAANSCNEWCKK 300

Query:   290 TLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL 349
             TL+ +KEASPLSLK++L+SIREGRFQT D+CL  EYR+S+ GVS+++SGDF E    +++
Sbjct:   301 TLKQIKEASPLSLKITLQSIREGRFQTLDQCLTHEYRISICGVSKVVSGDFCEGIRARLV 360

Query:   350 NK 351
             +K
Sbjct:   361 DK 362

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

TAIR|locus:2054437 AT2G30660 [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 156/322 (48%), Positives = 213/322 (66%)

Query:    34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCA 89
             +QVLVE K++ R+  LNRP  LNAL  NM ++L +LF+A+E DP++      G GRAFCA
Sbjct:     5 SQVLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCA 64

Query:    90 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 149
             GGD+  +   M QGK     DFFR  Y+  Y++ T+ KP V+ILNG+ MG GAGVSI G 
Sbjct:    65 GGDVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGR 124

Query:   150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 209
             FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAE++ACGLATH
Sbjct:   125 FRIATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLATH 184

Query:   210 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 269
             +  S +L  +E +L K+ + DPS +   L+ Y+   +  + S  HR+D++D+CF   T+E
Sbjct:   185 FVPSTRLTALETDLCKVGSSDPSFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFSKRTME 244

Query:   270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 329
             EII +LE E +   D W  +T+R LK++SP SLK+SLRSIREGR Q    CL REYRM  
Sbjct:   245 EIISALERETTQELDDWSLTTIRALKKSSPSSLKISLRSIREGRLQGVGHCLTREYRMVC 304

Query:   330 QGVSRLISGDFYEVSNFQILNK 351
               +   +S D  E     +++K
Sbjct:   305 HVMKGDLSKDLVEGCRAILIDK 326

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2152069 CHY1 "beta-hydroxyisobutyryl-CoA hydrolase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 150/313 (47%), Positives = 210/313 (67%)

Query:    34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCA 89
             +QVLVE K++ R+  LNRP  LNAL+ +M ++L +LF A+E DP++      G GRAFCA
Sbjct:     9 SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68

Query:    90 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 149
             GGD+ ++   +NQG      ++F + Y   Y++ T+ K  V+ILNG+ MGGGAGVS+ G 
Sbjct:    69 GGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128

Query:   150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 209
             FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct:   129 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 188

Query:   210 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 269
             +  S +L  +E +L ++ ++DP+     L+ Y+      + S   R+D++D+CF   TVE
Sbjct:   189 FVPSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCFSRRTVE 248

Query:   270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 329
             EII +LE EA+   D W  +T++ LK+ SP SLK+SLRSIREGR Q   +CL+REYRM  
Sbjct:   249 EIISALEREATQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIREYRMVC 308

Query:   330 QGVSRLISGDFYE 342
               +   IS DF E
Sbjct:   309 HVMKGEISKDFVE 321

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IGI;IDA

GO:0006574 "valine catabolic process" evidence=NAS;IMP

GO:0006635 "fatty acid beta-oxidation" evidence=TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

TAIR|locus:2054517 AT2G30650 [Arabidopsis thaliana (taxid:3702)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 150/322 (46%), Positives = 213/322 (66%)

Query:    34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCA 89
             +QVLVE K++ R+   NRP  LNAL+ +M ++L +LF A+E DP++      G GRAF A
Sbjct:     5 SQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSA 64

Query:    90 GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 149
             GGDI  +   + QGKL     +F+  Y+  Y+L T+ KP V+ILNG+ MGGGAG+S  G 
Sbjct:    65 GGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGR 124

Query:   150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 209
             FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct:   125 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 184

Query:   210 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 269
             +  S  L  +E EL K+ + + + I   L+ Y++  + +++S  HR+D++D+CF   TVE
Sbjct:   185 FVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVE 244

Query:   270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 329
             EI  +LE E +   + W  +T++ L++ASP  LK+SLRSIREGR Q   +CL+REYRM  
Sbjct:   245 EIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVC 304

Query:   330 QGVSRLISGDFYEVSNFQILNK 351
               +   IS DF E     +++K
Sbjct:   305 HVMKGDISKDFVEGCRAVLIDK 326

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2009180 AT1G06550 [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 130/311 (41%), Positives = 195/311 (62%)

Query:    36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
             V+ E K + R+  LNRP  LN ++  +  KL +  + WE D         G+GRAF AGG
Sbjct:    13 VIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFSAGG 72

Query:    92 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
             D+   YH   Q   + C +    +Y   Y + T+ K  V+++NG++MGGGA + +P  F 
Sbjct:    73 DLKVFYH--GQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPMKFS 130

Query:   152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 211
             V   KTVFATPE   GFH D G S+  S LPGHLGEFLALTGA+LNG E++A G+ATH+ 
Sbjct:   131 VVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGMATHFV 190

Query:   212 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 271
              S KL  +E  L  L + D  V+++ +E++S+ V  DK+S++++  ++++CF  ++V++I
Sbjct:   191 PSGKLMDLEARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKESVKQI 250

Query:   272 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQG 331
             I + E+EAS   + W    ++ LK +SP  LK+ L+SIREGR QT  +CL +E+R++L  
Sbjct:   251 IQAFEAEASKDGNEWITPVIKGLKRSSPTGLKIVLQSIREGRKQTLSDCLKKEFRLTLNI 310

Query:   332 VSRLISGDFYE 342
             + + IS D YE
Sbjct:   311 LRKTISPDMYE 321

GO:0003824 "catalytic activity" evidence=IEA

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

UNIPROTKB|Q6NVY1 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 135/353 (38%), Positives = 196/353 (55%)

Query:     9 ISRY--FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKL 66
             +SR+  F     +  H   S  TD    +VL+E K  + +  LNRP  LNAL  NM  ++
Sbjct:    10 MSRFNAFKRTNTILHHLRMSKHTD-AAEEVLLEKKGCTGVITLNRPKFLNALTLNMIRQI 68

Query:    67 NKLFKAWENDPN-----IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL 121
                 K WE DP      I    G+AFCAGGDI  +     + K +    FFR  Y     
Sbjct:    69 YPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISE-AEKAKQKIAPVFFREEYMLNNA 127

Query:   122 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 181
             +G+  KP+VA+++G+TMGGG G+S+ G FRVA  K +FA PET IG  PD G  ++L  L
Sbjct:   128 VGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRL 187

Query:   182 PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY 241
              G LG FLALTG +L G ++   G+ATH+  SEKL ++EE+L  L +     I + LE Y
Sbjct:   188 QGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENY 247

Query:   242 --SDLVYPDKNSVIHR-IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEAS 298
                  +  DK+ ++   +D ++ CF  +TVEEII++L+ + S     +    L+++ + S
Sbjct:   248 HTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGS----SFALEQLKVINKMS 303

Query:   299 PLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 351
             P SLK++LR + EG  +T  E L  EYR+S Q   R    DF+E     +++K
Sbjct:   304 PTSLKITLRQLMEGSSKTLQEVLTMEYRLS-QACMR--GHDFHEGVRAVLIDK 353

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

RGD|1308392 Hibch "3-hydroxyisobutyryl-CoA hydrolase" [Rattus norvegicus (taxid:10116)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 130/352 (36%), Positives = 198/352 (56%)

Query:    10 SRYFNDLRA--LSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLN 67
             SR+ +  RA  + QH   S  T+    +VL+E +  + +  LNRP  LNAL+ NM  ++ 
Sbjct:    11 SRFSSIRRASVILQHLRMSKHTETA--EVLLERRGCAGVITLNRPKLLNALSLNMIRQIY 68

Query:    68 KLFKAWENDPN-----IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL 122
                K WE DP+     I    G+AFCAGGDI +L      G+    +D FR  Y     +
Sbjct:    69 PQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQTLS-QDLFREEYILNNAI 127

Query:   123 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP 182
              +  KP+VA+++G+TMGGG G+S+ G FRVA  +++FA PET IG  PD G  ++L  L 
Sbjct:   128 ASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQ 187

Query:   183 GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY- 241
             G LG FLALTG +L G ++   G+ATH+  SEKL ++EEEL  L +     +   LE Y 
Sbjct:   188 GKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLESYH 247

Query:   242 -SDLVYPDKNSVIHR-IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASP 299
                 +  DK+ +    +D ++ CF  +TVE+I+++L  + S    P+    ++++ + SP
Sbjct:   248 AKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLRQDGS----PFAMEQIKVINKMSP 303

Query:   300 LSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 351
              SLK++LR + EG  +T  E L  EYR++ Q        DF+E     +++K
Sbjct:   304 TSLKITLRQLMEGSTKTLQEVLTMEYRLT-QACME--GHDFHEGVRAVLIDK 352

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006574 "valine catabolic process" evidence=IEA

MGI|MGI:1923792 Hibch "3-hydroxyisobutyryl-Coenzyme A hydrolase" [Mus musculus (taxid:10090)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 130/354 (36%), Positives = 198/354 (55%)

Query:     6 ISNISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAK 65
             +S +S  F     + QH   S  T+    +VL+E +    +  LNRP  LNAL+ NM  +
Sbjct:    10 LSRVSS-FRRASVILQHLRMSMHTE--AAEVLLERRGCGGVITLNRPKFLNALSLNMIRQ 66

Query:    66 LNKLFKAWENDPN-----IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY 120
             +    K WE DP+     I    G+AFCAGGDI +L     + +    +D FR  Y    
Sbjct:    67 IYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKALSE-AKKARQNLTQDLFREEYILNN 125

Query:   121 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH 180
              + +  KP+VA+++G+TMGGG G+S+ G FRVA  +++FA PET IG  PD G  ++L  
Sbjct:   126 AIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPR 185

Query:   181 LPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEK 240
             L G LG FLALTG +L G ++   G+ATH+  SEKL ++EEEL  L +     +   LE 
Sbjct:   186 LQGKLGYFLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLES 245

Query:   241 YSDLVYPDKN-SVI--HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA 297
             Y      D++ S+I    +D ++ CF  +TVE+II++L  + S    P+    ++++ + 
Sbjct:   246 YHAKSKMDQDKSIIFEEHMDKINSCFSANTVEQIIENLRQDGS----PFAIEQMKVINKM 301

Query:   298 SPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 351
             SP SLK++LR + EG  +T  E L+ EYR++ Q        DF+E     +++K
Sbjct:   302 SPTSLKITLRQLMEGSSKTLQEVLIMEYRIT-QACME--GHDFHEGVRAVLIDK 352

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

FB|FBgn0038326 CG5044 [Drosophila melanogaster (taxid:7227)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 124/322 (38%), Positives = 187/322 (58%)

Query:    34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF--GSG-RAFCAG 90
             + VL    +N  M ILNRP ALNA+N  M  K+ K  K  E   ++    G+G +AFCAG
Sbjct:    45 SSVLATESSNKGMIILNRPKALNAINLEMVRKIYKHLKKCEKSKSLVIIKGTGDKAFCAG 104

Query:    91 GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
             GD+ +L   +  G  +E K FFR  YS   L+G +  P++AI++G+TMGGG G+S+ G +
Sbjct:   105 GDVRAL---VEAGPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMGGGVGLSVHGKY 161

Query:   151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 210
             RVA  +T+FA PET IG  PD G S++L  L G LG +L LTG +L GA++   G+ATHY
Sbjct:   162 RVASDRTLFAMPETAIGLFPDVGGSYFLPRLQGKLGLYLGLTGYRLRGADVYYSGIATHY 221

Query:   211 SVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI-DIVDKCFGLDTVE 269
               S K+P +E  L  L   D   +   L+KY     P+K   +  + + ++K F  D+VE
Sbjct:   222 CESSKIPDLETAL--LNCPDADDVPELLQKYHSP--PEKPFSLQPVLEQINKNFSADSVE 277

Query:   270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 329
              I+++L+++ S     W   TL  L + SP S+KV+ R +  G   +  +CL+ EYR+++
Sbjct:   278 GILENLQNDGS----EWAKKTLETLSKMSPTSMKVTFRQLELGSQLSLAQCLIMEYRLAV 333

Query:   330 QGVSRLISGDFYEVSNFQILNK 351
             + + R    DF E     +++K
Sbjct:   334 RHLER---SDFKEGVRALLIDK 352

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|Q5ZJ60 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 128/349 (36%), Positives = 195/349 (55%)

Query:    13 FNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKA 72
             FN L+ + QH  +   TD   + VL++ +  + +  LNRP  LNAL+  M  ++    KA
Sbjct:    15 FNRLQVILQHLKTCKHTDSAAD-VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKA 73

Query:    73 WENDPN----IGFGSG-RAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTH 125
             WE DP     I  G+G +AFCAGGD+ ++    + GK  +   +D+FR  Y     +GT 
Sbjct:    74 WEQDPETFLIIIKGTGEKAFCAGGDVRAI---ADAGKAGDTMTRDYFREEYRLDNAIGTC 130

Query:   126 LKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 185
              KP+VA+++G+TMGGG G+S+ G FRVA  KTVFA PET IG  PD G  ++L  L G +
Sbjct:   131 KKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKI 190

Query:   186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SD 243
             G  LALTG +L G +++  G+ATH+  S KLP +E++L  L +     I   L  Y    
Sbjct:   191 GHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQT 250

Query:   244 LVYPDKNSVI-HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSL 302
              +  +K  V+   ++ ++  F  +++EEI+  L+ + S    P+    L  + + SP SL
Sbjct:   251 KIDQEKEFVLDEHMERINSIFSANSMEEIVQKLKQDGS----PFATKQLEAINKMSPTSL 306

Query:   303 KVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 351
             K++LR +REG   +  +    EYR+S Q   R    DFYE     +++K
Sbjct:   307 KLTLRQLREGATMSLQDVFTMEYRLS-QACMR--GHDFYEGVRAVLIDK 352

GO:0003860 "3-hydroxyisobutyryl-CoA hydrolase activity" evidence=IEA

GO:0006574 "valine catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5XF59	HIBC4_ARATH	3, ., 1, ., 2, ., -	0.6829	0.9178	0.8079	yes	no
Q28FR6	HIBCH_XENTR	3, ., 1, ., 2, ., 4	0.3651	0.9263	0.8493	yes	no
Q5ZJ60	HIBCH_CHICK	3, ., 1, ., 2, ., 4	0.3698	0.9093	0.8337	yes	no
Q6NVY1	HIBCH_HUMAN	3, ., 1, ., 2, ., 4	0.3951	0.8866	0.8108	yes	no
Q8QZS1	HIBCH_MOUSE	3, ., 1, ., 2, ., 4	0.3765	0.8753	0.8025	yes	no
Q5XIE6	HIBCH_RAT	3, ., 1, ., 2, ., 4	0.3799	0.8838	0.8103	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.2	0.766
3rd Layer	3.1.2.4	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.40.97.1	hypothetical protein (381 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_VIII0916	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)			•			•		•	0.907
	grail3.0006050201	enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)			•			•		•	0.907
	estExt_fgenesh4_pg.C_LG_VI1023	SubName- Full=Putative uncharacterized protein; (380 aa)			•			•		•	0.907
	eugene3.00013051	hypothetical protein (348 aa)	•	•				•			0.900

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	0.0
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	1e-166
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	1e-119
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	1e-102
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	5e-97
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	5e-38
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	3e-36
pfam13766	117	pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal	3e-27
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	7e-21
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	3e-18
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	2e-15
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	3e-15
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	4e-15
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	8e-15
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	3e-14
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	2e-13
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	4e-13
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	3e-12
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	4e-12
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	7e-12
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	1e-11
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	2e-11
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	3e-11
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	4e-11
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	2e-10
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	3e-10
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	4e-10
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	5e-10
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	8e-10
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	1e-09
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	1e-09
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	8e-09
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	1e-08
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	2e-08
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	2e-08
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	3e-08
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	6e-08
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	6e-08
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	2e-07
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	3e-07
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	4e-07
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	5e-07
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	8e-07
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	3e-06
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	6e-06
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	6e-06
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	8e-06
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	1e-05
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	8e-05
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	1e-04
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	2e-04
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	3e-04
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	3e-04
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	4e-04
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	4e-04
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	5e-04
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	8e-04
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	0.002
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	0.004

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  506 bits (1305), Expect = 0.0
 Identities = 221/354 (62%), Positives = 281/354 (79%), Gaps = 12/354 (3%)

Query: 1   MQRLK-ISNISRYFNDLR--ALSQHRTSSSV-----TDDLCNQVLVEGKANSRMAILNRP 52
           MQR+K +  ++     +R  ++S  R+ S++      DDL +QVLVEG+A SR AILNRP
Sbjct: 1   MQRVKALRRVAVPLQWVRFGSVSYGRSFSALPNYAANDDLQDQVLVEGRAKSRAAILNRP 60

Query: 53  SALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC 108
           S+LNAL   M A+L +L+++WE +P+IGF    GSGRAFC+G D+VSLYH +N+G +EEC
Sbjct: 61  SSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120

Query: 109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF 168
           K FF  LY F+YL GT+LKP+VAI++G+TMG GAG+SIPG FRV   KTVFA PE  +GF
Sbjct: 121 KLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGF 180

Query: 169 HPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVT 228
           HPDAGAS+YLS LPG+LGE+LALTG KLNG EM+ACGLATHY ++ +LPLIEE LGKL+T
Sbjct: 181 HPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLT 240

Query: 229 DDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCG 288
           DDP+VIE  L +Y DLVYPDK+SV+H+I+ +DKCFG DTVEEII++LE+EA+   D WC 
Sbjct: 241 DDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVEEIIEALENEAASSYDEWCK 300

Query: 289 STLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 342
             L+ +KEASPLSLKV+L+SIREGRFQT D+CL REYR+SL GVS+ +SGDF E
Sbjct: 301 KALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCE 354

Length = 407

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  469 bits (1208), Expect = e-166
 Identities = 223/327 (68%), Positives = 267/327 (81%), Gaps = 4/327 (1%)

Query: 29  TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG 84
            +DL  QVLVEG   SR AILNRP ALNAL T+MG +L KL+K WE DPNIGF    GSG
Sbjct: 32  PEDLDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG 91

Query: 85  RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGV 144
           RAFCAGGDIVSLYH   +G  +  ++FF +LYSFIYLLGT+LKPHVAILNGVTMGGG GV
Sbjct: 92  RAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGV 151

Query: 145 SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMAC 204
           SIPGTFRVA  +T+FATPET+IGFHPDAGASF LSHLPG LGE+L LTG KL+GAEM+AC
Sbjct: 152 SIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLAC 211

Query: 205 GLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 264
           GLATHY  SE++P++EE+L KL+TDDPSV+E+CLEK +++ +P+K  VI RID+++KCF 
Sbjct: 212 GLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFS 271

Query: 265 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVRE 324
            DTVEEIIDSLE EA    D WC +TLR LKE+SPLSLKV+LRSIREGR QT D+CL+RE
Sbjct: 272 HDTVEEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIRE 331

Query: 325 YRMSLQGVSRLISGDFYEVSNFQILNK 351
           YRMSLQG+   +SG+F E    ++++K
Sbjct: 332 YRMSLQGLIGPMSGNFCEGVRARLIDK 358

Length = 401

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score =  350 bits (899), Expect = e-119
 Identities = 139/311 (44%), Positives = 201/311 (64%), Gaps = 6/311 (1%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           VL E K   R+  LNRP  LN ++ ++ + L +  + WE D ++      G+GRAF AGG
Sbjct: 13  VLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGG 72

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           D+   Y    +   + C +    +Y   Y + T+ K  VA+++G+ MGGGAG+ +P  FR
Sbjct: 73  DLKMFYD--GRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFR 130

Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 211
           V   KTVFATPE  +GFH D G S+ LS LPGHLGE+LALTGA+LNG EM+ACGLATH+ 
Sbjct: 131 VVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEYLALTGARLNGKEMVACGLATHFV 190

Query: 212 VSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 271
            SEKLP +E+ L  L + D S ++  +E++S  V  D++S++++   +++CF  DTVEEI
Sbjct: 191 PSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEI 250

Query: 272 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQG 331
           I + ESEAS   + W   TL+ L+ +SP  LK++LRSIREGR Q+  ECL +E+R+++  
Sbjct: 251 IKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNI 310

Query: 332 VSRLISGDFYE 342
           +   +S D YE
Sbjct: 311 LRSTVSDDVYE 321

Length = 379

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score =  305 bits (781), Expect = e-102
 Identities = 152/313 (48%), Positives = 209/313 (66%), Gaps = 4/313 (1%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCA 89
           +QVLVE K++ R+  LNRP  LNAL+ +M ++L +LF A+E DP++      G GRAFCA
Sbjct: 9   SQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCA 68

Query: 90  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 149
           GGD+ ++   + QG      +FF   Y   Y++ T+ K  V+ILNG+ MGGGAGVS+ G 
Sbjct: 69  GGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGR 128

Query: 150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATH 209
           FR+A   TVFA PET +G  PD GAS++LS LPG  GE++ LTGA+L+GAEM+ACGLATH
Sbjct: 129 FRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATH 188

Query: 210 YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 269
           +  S +L  +E +L ++ ++DP+     L+ Y+        S  HR+D++D+CF   TVE
Sbjct: 189 FVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVE 248

Query: 270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 329
           EII +LE EA+   D W  +T++ LK+ASP SLK+SLRSIREGR Q   +CL+REYRM  
Sbjct: 249 EIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVC 308

Query: 330 QGVSRLISGDFYE 342
             +   IS DF E
Sbjct: 309 HVMKGEISKDFVE 321

Length = 381

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score =  290 bits (746), Expect = 5e-97
 Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 15/300 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQG 103
           LNRP ALNAL+  M   ++    AWE+D  +      G+G R FCAGGDI +LY     G
Sbjct: 18  LNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAG 77

Query: 104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
                  FFR  Y    L+  + KP++A+++G+ MGGG G+S  G+ R+   +T  A PE
Sbjct: 78  DPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPE 137

Query: 164 TLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 223
           T IGF PD G +++LS  PG LG +LALTGA+++ A+ +  GLA H+  S  LP + + L
Sbjct: 138 TGIGFFPDVGGTYFLSRAPGALGTYLALTGARISAADALYAGLADHFVPSADLPALLDAL 197

Query: 224 GKLVTDDPS-VIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLI 282
             L  D  + V++A L  ++       + +  +   +D+CF  DTVE+II +LE++    
Sbjct: 198 ISLRWDSGADVVDAALAAFA--TPAPASELAAQRAWIDECFAGDTVEDIIAALEADG--- 252

Query: 283 NDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 342
              +   T   L+  SP SLKV+L  +R  R  T +ECL RE R++L  +    S DF E
Sbjct: 253 -GEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLR---SPDFVE 308

Length = 342

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  134 bits (339), Expect = 5e-38
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 7/173 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP   NAL+  M  +L       E DP++      G+G+AFCAG D+  L    + G 
Sbjct: 14  LNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAG- 72

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            EE + F R L   +  L    KP +A +NG  +GGG  +++    R+A     F  PE 
Sbjct: 73  -EEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEV 131

Query: 165 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 216
            +G  P  G +  L  L G      L LTG +++  E +  GL       E+L
Sbjct: 132 KLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEEL 184

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  131 bits (331), Expect = 3e-36
 Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 9/191 (4%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           +LVE +    +  LNRP  LNALN  M  +L +     E DP++      G+G+AF AG 
Sbjct: 7   ILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGA 66

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           D+         G   E  +  +     +  L    KP +A +NG  +GGG  +++    R
Sbjct: 67  DL-KELLSPEDGNAAE--NLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIR 123

Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 210
           +A     F  PE  +G  P  G +  L  L G      L LTG  ++ AE +  GL    
Sbjct: 124 IAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDE- 182

Query: 211 SVSEKLPLIEE 221
            V +   L+E 
Sbjct: 183 VVPDAEELLER 193

Length = 257

>gnl|CDD|205939 pfam13766, ECH_C, 2-enoyl-CoA Hydratase C-terminal region

 Score =  103 bits (259), Expect = 3e-27
 Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 254 HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGR 313
              + +D+CF  DTVEEI+ +LE++       W   TL+ L+  SPLSLKV+L  +R GR
Sbjct: 3   EHREAIDRCFSGDTVEEILAALEADG----SEWAAKTLKTLRSGSPLSLKVTLEQLRRGR 58

Query: 314 FQTFDECLVREYRMSLQGVSRLISGDFYE 342
             +  ECL  EYR++++ ++    GDF E
Sbjct: 59  GLSLAECLRMEYRLAVRCMAH---GDFAE 84

This is the C-terminal region of enoyl-CoA hydratase. Length = 117

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 90.0 bits (224), Expect = 7e-21
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 9/163 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           L+RP A+NAL+  +  +L +  +  E DP++      G   AF AG DI  +        
Sbjct: 13  LDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEMAA----EP 68

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
           L +   F          L    KP +A +NG  +GGG  +++   +R+A     F  PE 
Sbjct: 69  LAQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEV 128

Query: 165 LIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGL 206
            +G  P AG +  L  + G      + LTG ++   E +  GL
Sbjct: 129 KLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGL 171

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 82.6 bits (205), Expect = 3e-18
 Identities = 51/167 (30%), Positives = 69/167 (41%), Gaps = 12/167 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           +NRP   NAL   M   L    +A   DP +      G+GRAF AGGDI     F     
Sbjct: 20  INRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKD---FPKAPP 76

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
             +  D    +  F+  +    KP VA +NG  +G G  +++      A     F+ P  
Sbjct: 77  --KPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFA 134

Query: 165 LIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATH 209
            +G  PDAG S  L  L G     E + L G  L+  E +  GL   
Sbjct: 135 KLGLCPDAGGSALLPRLIGRARAAE-MLLLGEPLSAEEALRIGLVNR 180

Length = 259

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 31/223 (13%)

Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFC 88
             V++E + +  +  +NRP ALNALN+    +L+ +    END N+      G+G +AF 
Sbjct: 4   KNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFV 63

Query: 89  AGGDIVSLYHFMNQGKLEECKDF-------FRTLYSFIYLLGTHLKPHVAILNGVTMGGG 141
           AG DI      M     EE + F       FR L      L    KP +A +NG  +GGG
Sbjct: 64  AGADISE----MKDLNEEEGRKFGLLGNKVFRKL----ENLD---KPVIAAINGFALGGG 112

Query: 142 AGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGA 199
             +S+    R+A  K  F  PE  +G  P  G +  L+ +  PG   E L  TG  +N  
Sbjct: 113 CELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKE-LIYTGDMINAE 171

Query: 200 EMMACGLATHYSVSEKLPLIEEELG---KLVTDDPSVIEACLE 239
           E +  GL     V E   L+EE      K+  + P  ++ C +
Sbjct: 172 EALRIGLVN--KVVEPEKLMEEAKALANKIAANAPIAVKLCKD 212

Length = 260

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 66/230 (28%), Positives = 93/230 (40%), Gaps = 55/230 (23%)

Query: 29  TDDLCNQVLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----G 82
                + VL+E  A+  +A+  LNRP A NALN  +  +L + F     DP+I      G
Sbjct: 2   MSTATDVVLLERPADG-VALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG 60

Query: 83  SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL---------KPHVAIL 133
             + F AG DI     F   G +E            +YL  T           KP +A +
Sbjct: 61  GEKVFAAGADIKE---FATAGAIE------------MYLRHTERYWEAIAQCPKPVIAAV 105

Query: 134 NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF----L 189
           NG  +GGG  +++     VA     F  PE  +G  P AG +     L   +G+F    +
Sbjct: 106 NGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGT---QRLVRAVGKFKAMRM 162

Query: 190 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLE 239
           ALTG  +   E +A GL     VSE            V +D   +   LE
Sbjct: 163 ALTGCMVPAPEALAIGL-----VSE------------VVEDEQTLPRALE 195

Length = 261

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 74.0 bits (182), Expect = 4e-15
 Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           + VE +    +  ++RP  LNALN  M  +     K    DP I      G GRAFC G 
Sbjct: 2   IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGA 61

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           D+                D   T Y  I  +    K +++ +NGVT G   G+++   F+
Sbjct: 62  DLSEF-----APDFAI--DLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFK 114

Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGL 206
            A     F T    +G   D G +++L  L G     + + G +    E    GL
Sbjct: 115 FASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLGGEFTAEEAERWGL 169

Length = 248

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 72.9 bits (179), Expect = 8e-15
 Identities = 63/214 (29%), Positives = 89/214 (41%), Gaps = 15/214 (7%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN----IGFGSG-RAFCAG 90
           VL+E +    +  LNRP  LNALN  +  +L     A E D +    I  G+G RAF AG
Sbjct: 5   VLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAG 64

Query: 91  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
            DI      +  G     +DF R   +    L    KP +A +NG+  GGG  ++     
Sbjct: 65  ADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHL 124

Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG-----EFLALTGAKLNGAEMMACG 205
            +A  + +FA PE  +G  P  G +     LP   G     E L LTG   +    +  G
Sbjct: 125 AIASERALFAKPEIRLGMPPTFGGT---QRLPRLAGRKRALELL-LTGDAFSAERALEIG 180

Query: 206 LATH-YSVSEKLPLIEEELGKLVTDDPSVIEACL 238
           L        E LP       +++   P  + A L
Sbjct: 181 LVNAVVPHEELLPAARALARRIIRHSPVAVAAIL 214

Length = 260

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 61/202 (30%), Positives = 89/202 (44%), Gaps = 29/202 (14%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGG 91
           +LVE +    +  LNRP ALNALN  +  +L     A++ D  IG     GS +AF AG 
Sbjct: 6   ILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGA 65

Query: 92  DI--VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 149
           DI  ++   FM+  K     D+          +    KP +A + G  +GGG  +++   
Sbjct: 66  DIKEMADLSFMDVYK----GDYITNWEK----VARIRKPVIAAVAGYALGGGCELAMMCD 117

Query: 150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF----LALTGAKLNGAEMMACG 205
             +A     F  PE  +G  P  G S     L   +G+     L LTG  ++ AE    G
Sbjct: 118 IIIAADTAKFGQPEIKLGVLPGMGGS---QRLTRAVGKAKAMDLCLTGRMMDAAEAERAG 174

Query: 206 LATHYSVSEKLP---LIEEELG 224
           L     VS  +P   L++E L 
Sbjct: 175 L-----VSRVVPADKLLDEALA 191

Length = 257

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 8/196 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP   NA N  + A+L   F+A + D ++      G+G+AFCAG D+  +   M    
Sbjct: 19  LNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKK-MAGYS 77

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            +E +   R L   +  +    KP +A ++G    GG G+       VA    VF   E 
Sbjct: 78  DDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEV 137

Query: 165 LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVS-EKL-PLIEEE 222
            +G  P   + + +  +         LT  + + AE +  GL  H  V  E L   ++E 
Sbjct: 138 RLGLIPATISPYVIRAMGERAARRYFLTAERFDAAEALRLGLV-HEVVPAEALDAKVDEL 196

Query: 223 LGKLVTDDPSVIEACL 238
           L  LV + P  + A  
Sbjct: 197 LAALVANSPQAVRAGK 212

Length = 262

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 57/180 (31%), Positives = 79/180 (43%), Gaps = 19/180 (10%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN----IGFGSG-RAFCAG 90
             VE K +  +  LNRP  +NAL+ +   +L ++F  +  DP     I  G+G +AF AG
Sbjct: 6   STVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAG 65

Query: 91  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
            D   L      GK    +  F  L S   L     KP +A +NGV MGGG  +++    
Sbjct: 66  ND---LKEQAAGGKRGWPESGFGGLTSRFDL----DKPIIAAVNGVAMGGGFELALACDL 118

Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 206
            VA     FA PE  +G    AG       LP  +G   A    LTG ++   E +  G 
Sbjct: 119 IVAAENATFALPEPRVGLAALAGGLH---RLPRQIGLKRAMGMILTGRRVTAREGLELGF 175

Length = 259

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 12/189 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN----IGFGSG-RAFCAGGDIVSLYHFMNQG 103
           LNRP A NAL+  +  +L  +      + N    I  G+G +AFCAG D+      MN+ 
Sbjct: 19  LNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAG-MNE- 76

Query: 104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
             E+ +     + + + ++    +P +A +NG+ +GGG  +++   FR+A         E
Sbjct: 77  --EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTE 134

Query: 164 TLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEE 221
           T +   P AG +  L  L   G   E L  TG +++  E    GL      +  L     
Sbjct: 135 TTLAIIPGAGGTQRLPRLIGVGRAKE-LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI 193

Query: 222 ELGKLVTDD 230
           E+ + +  +
Sbjct: 194 EIAEKIASN 202

Length = 260

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 11/166 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN----IGFGSGRAFCAGGDIVSLYHFMNQGK 104
           +N P   NA+   M A+L     A E DP+    +  G+G+AFCAG D+ +L      G+
Sbjct: 18  VNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTAL--GAAPGR 75

Query: 105 LEECKDFFRTLY-SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
             E  D  R +Y  F+ +    L P +A +NG  +G G  +++    R+A  K +F    
Sbjct: 76  PAE--DGLRRIYDGFLAVASCPL-PTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARF 132

Query: 164 TLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLAT 208
             +G HP  GA++ L    G  +     L G + +    +  GLA 
Sbjct: 133 QKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLAL 178

Length = 249

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 57/192 (29%), Positives = 76/192 (39%), Gaps = 28/192 (14%)

Query: 35  QVLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFC 88
            VL E  A+S +A+  LNRP  LNA    M A++       E DP +      G+GR FC
Sbjct: 6   AVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFC 64

Query: 89  AGGDIVSL----------YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 138
           AG D+  L             +         D ++T Y F+  L    KP +A +NG   
Sbjct: 65  AGADMGELQTIDPSDGRRDTDVRPFVGNRRPD-YQTRYHFLTALR---KPVIAAINGACA 120

Query: 139 GGGAGVSIPGTFRVACGKTVFATPET---LIGFHPDAGASFYLSHLPGHLGEF-LALTGA 194
           G G   ++    R A     F T      LI  H   G S+ L  L GH     L L+  
Sbjct: 121 GIGLTHALMCDVRFAADGAKFTTAFARRGLIAEH---GISWILPRLVGHANALDLLLSAR 177

Query: 195 KLNGAEMMACGL 206
                E +  GL
Sbjct: 178 TFYAEEALRLGL 189

Length = 272

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 7/163 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN---IGFGSGRAFCAGGDIVSLYHFMNQGKL 105
           LNRP  LN+    M  +L +  +  E D     +  G+GR FCAG D+         G  
Sbjct: 14  LNRPDKLNSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERN--PTPGGA 71

Query: 106 EECKDFFRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            +      T Y+  +  L     P V  +NGV  G GA +++     +A     F     
Sbjct: 72  PDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFA 131

Query: 165 LIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGL 206
            IG  PD+G ++ L  L G      LA+ G KL+     + GL
Sbjct: 132 KIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGL 174

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 13/171 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN-----IGFGSGRAFCAGGDIVSLYHFMNQG 103
           L+RP A NA+   M   L   F+  + D +     +       FCAG D+      M+  
Sbjct: 10  LDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADL-KERRKMS-- 66

Query: 104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATP 162
              E + F  +L S    L     P +A++ G  +GGG  +++    R+ CG+  VF  P
Sbjct: 67  -PSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRI-CGEEAVFGLP 124

Query: 163 ETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSV 212
           ET +   P AG +  L  L G    + L  TG ++   E  + GL  +Y V
Sbjct: 125 ETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLV-NYCV 174

Length = 251

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 54/219 (24%), Positives = 82/219 (37%), Gaps = 20/219 (9%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           +LVE     R   LNRP A NAL+  +   L       + D ++      G+  AFCAG 
Sbjct: 6   LLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGL 65

Query: 92  DIVSL----YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 147
           D+  L      +  Q  L                     KP +  +NG  + GG  +++ 
Sbjct: 66  DLKELGGDGSAYGAQDALPNP----------SPAWPAMRKPVIGAINGAAVTGGLELALA 115

Query: 148 GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGL 206
               +A  +  FA     +G  P  G S  L    G      ++LTG  L+ A+ +  GL
Sbjct: 116 CDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGL 175

Query: 207 ATH-YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDL 244
            T      E LP        +  ++P+ + A    Y D 
Sbjct: 176 VTEVVPHDELLPRARRLAASIAGNNPAAVRALKASYDDG 214

Length = 258

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 15/215 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGK 104
            NRP   NA+   M A + K  KA + D  I      G+   F AG D+         G 
Sbjct: 21  FNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGT 80

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
                 F   +  F+  L    KP V+ ++G+ +G G  + +      A  +++F TP  
Sbjct: 81  -----SFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFV 135

Query: 165 LIGFHPDAGASFYLSHLPGHLGEF--LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE 222
            +   P+AG+S     L GH   F  LAL G   +       GL   + + ++   +E E
Sbjct: 136 DLALVPEAGSSLLAPRLMGHQRAFALLAL-GEGFSAEAAQEAGLI--WKIVDE-EAVEAE 191

Query: 223 LGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID 257
             K   +  +     L+   DL+   +  ++ RID
Sbjct: 192 TLKAAEELAAKPPQALQIARDLMRGPREDILARID 226

Length = 251

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 18/176 (10%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQG 103
            LNRPS  NAL+ +   +  K   + + +PN+      G+G  FC+G D+ +L     Q 
Sbjct: 22  NLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQS 81

Query: 104 KL-------EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 156
                    E  +   + L   I  +    KP +A ++G  +GGG  +      R     
Sbjct: 82  SSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED 141

Query: 157 TVFATPETLIGFHPDAGASFYLSHLPGHLG----EFLALTGAKLNGAEMMACGLAT 208
             F+  E  +    D G    L  LP  +G      LALTG + +G+E    GL +
Sbjct: 142 AFFSVKEVDLAITADLGT---LQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVS 194

Length = 275

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 52/258 (20%), Positives = 94/258 (36%), Gaps = 16/258 (6%)

Query: 24  TSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI---- 79
           ++ S       ++L E          N P+  NA++ +M   L +   A E+D  I    
Sbjct: 1   STMSSISSPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVV 60

Query: 80  --GFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGV 136
             G G  +AF +G DI     F       E    +          L  + KP +A + G 
Sbjct: 61  LTGAG-EKAFVSGADIS---QFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGY 116

Query: 137 TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGA 194
            +GGG G+++    R+A   + F  P   +G          L  L  P    +    T  
Sbjct: 117 CIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLF-YTAR 175

Query: 195 KLNGAEMMACGLATHYSVSEKL-PLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVI 253
           + + AE +  GL    + ++ L   + +    +  + P  + A     ++L+  +    +
Sbjct: 176 RFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDM 235

Query: 254 HRID-IVDKCFGLDTVEE 270
                +V  CF  +   E
Sbjct: 236 AACQALVAACFDSEDYRE 253

Length = 269

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 8/164 (4%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGK 104
           L+ P A NAL+ +M A   +     E DP+I      G+G  FCAGG++  L    N+ K
Sbjct: 18  LSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLE--NRAK 75

Query: 105 -LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
                      L+ +I  +    KP +A + G   G G  +++     VA     F    
Sbjct: 76  PPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAY 135

Query: 164 TLIGFHPDAGASFYLSH-LPGHLGEFLALTGAKLNGAEMMACGL 206
             +G  PD G S++L+  LP  L   L L G  ++   + A G+
Sbjct: 136 VKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGV 179

Length = 260

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 48  ILNRPSALNALNTNMGAKL-NKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGK 104
           +LNRP ALNAL+  M  +L   L +  E+  +I    G+GR F AGGDI  +   ++   
Sbjct: 20  MLNRPEALNALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMM---LSSND 76

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
             +      T+   +  L T  K  ++ ++G   G G  +++   + +A      A    
Sbjct: 77  ESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFI 136

Query: 165 LIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLA 207
            IG  PD G  F+L    G +  + +   G KL+  E +  GL 
Sbjct: 137 GIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLI 180

Length = 260

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 35/161 (21%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN----IGFGSGRAFCAGGDIVS--------- 95
           LNRP  LNA    M  +L + F A + D      I  G+GRAFCAG D+ +         
Sbjct: 19  LNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDA 78

Query: 96  ---LYHFMNQGKLEECKDFFR------TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSI 146
                    + + +   D  R      TL  F       LKP +A +NG  +G GA +++
Sbjct: 79  PRTPVEADEEDRADPSDDGVRDGGGRVTLRIF-----DSLKPVIAAVNGPAVGVGATMTL 133

Query: 147 PGTFRVACGKT----VFATPETLIGFHPDAGASFYLSHLPG 183
               R+A        VF       G  P+A +S++L  L G
Sbjct: 134 AMDIRLASTAARFGFVFGR----RGIVPEAASSWFLPRLVG 170

Length = 296

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 51/190 (26%), Positives = 68/190 (35%), Gaps = 42/190 (22%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP  +NAL+  M  +L    K  + D  I      G G AFCAG D+ S     +   
Sbjct: 18  LNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKS---VASSPG 74

Query: 105 LEECKDFFRTLYSFIYLLGTHLK------------------PHVAILNGVTMGGGAGVSI 146
                         + LL   L                   P +A L GV  GGG  +++
Sbjct: 75  NA------------VKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIAL 122

Query: 147 PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMAC 204
               R+A   T  +  E   G  PD   +  L  L       E L  T    +  E +  
Sbjct: 123 GADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARE-LTYTARVFSAEEALEL 181

Query: 205 GLATHYSVSE 214
           GL TH  VS+
Sbjct: 182 GLVTH--VSD 189

Length = 262

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 48/175 (27%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 45  RMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFM 100
            +  LNRP A NALN  +  +L    +A   D +IG     G+ R F AG D+      M
Sbjct: 13  LLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNE----M 68

Query: 101 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 160
            +  L    +  R        L    KP +A +NG  +G G  +++     +A     F 
Sbjct: 69  AEKDLAATLNDPRPQL--WQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFG 126

Query: 161 TPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSE 214
            PE  +G  P AG +  L    G  L   + LTG  +   +    GL +     E
Sbjct: 127 LPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPE 181

Length = 255

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 49/206 (23%), Positives = 82/206 (39%), Gaps = 30/206 (14%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPN----IGFGSG-RAFCAGGDIVSL------ 96
            L+RP A NA++      + ++F  + +DP     I  G+G + F AG D+ +       
Sbjct: 17  TLDRPKA-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAP 75

Query: 97  ---YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVA 153
              +       L E  D                KP +A +NG   GGG  +++   F V 
Sbjct: 76  DADFGPGGFAGLTEIFDLD--------------KPVIAAVNGYAFGGGFELALAADFIVC 121

Query: 154 CGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLNGAEMMACGLATHYSV 212
                FA PE  +G  PD+G    L   LP  +   + +TG +++  E +  G+      
Sbjct: 122 ADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVP 181

Query: 213 SEKLPLIEEELGKLVTDDPSVIEACL 238
             +L     EL + + +   +  A L
Sbjct: 182 QAELMDRARELAQQLVNSAPLAIAAL 207

Length = 261

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 57/184 (30%), Positives = 81/184 (44%), Gaps = 18/184 (9%)

Query: 37  LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAW---ENDPNIGF----GSGRAFCA 89
           LVE + ++ +  +NRP A NAL+T M   L  +  AW   +NDP+I      G+G AFCA
Sbjct: 8   LVEQRGHTLIVTMNRPEARNALSTEM---LRIMVDAWDRVDNDPDIRSCILTGAGGAFCA 64

Query: 90  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTH--LKPHVAILNGVTMGGGAGVSIP 147
           G D+ +      +   +  KD          LL      KP +A + G  + GG  + + 
Sbjct: 65  GMDLKAA---TKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEI-LQ 120

Query: 148 GT-FRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLNGAEMMACG 205
           GT  RVA     F   E      P  G++  L   +P  +   L LTG  +  AE    G
Sbjct: 121 GTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIG 180

Query: 206 LATH 209
           L  H
Sbjct: 181 LIGH 184

Length = 263

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN---IGFGSGRAFCAGGDIVSLYHFMNQGKL 105
           LNRP  LN+    M  +L +     E+D     +  G+GR FCAG D+         G +
Sbjct: 19  LNRPDKLNSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADR-DVTPGGAM 77

Query: 106 EECKDFFRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            +  +   T Y+  +  L     P +A +NGV  G GA +++     +A     F     
Sbjct: 78  PDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFV 137

Query: 165 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGL 206
            IG  PD+G +++L  L G    LG  LAL G KL+  +    GL
Sbjct: 138 KIGLVPDSGGTWFLPRLVGMARALG--LALLGEKLSAEQAEQWGL 180

Length = 262

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 20/174 (11%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN----IGFGSGRAFCAGGDIVSLYHFMNQ-- 102
           LNRP   NA+N    ++L ++F+  + DP     +  GSG+ F  G D+ ++     Q  
Sbjct: 21  LNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80

Query: 103 -----GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
                    + +     L + I  +    KP +A + G  +GGG  +      R A    
Sbjct: 81  KDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADA 140

Query: 158 VFATPETLIGFHPDAGASFYLSHLP-----GHLGEFLALTGAKLNGAEMMACGL 206
            F+  E  +G   D G+   L  LP     GHL E LALTG  ++ AE    GL
Sbjct: 141 KFSVREVDLGMVADVGS---LQRLPRIIGDGHLRE-LALTGRDIDAAEAEKIGL 190

Length = 272

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 31 DLCNQVLVEGKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPN----IGFGSGR 85
             N +LV    N    I +NRP ALNAL   M  +L   FK  + D +    I  GSGR
Sbjct: 6  VSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGR 65

Query: 86 AFCAGGDI 93
          AFC+G D+
Sbjct: 66 AFCSGVDL 73

Length = 265

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 49  LNRPSA-LNALNTNMGAKLNKLFKAWENDPNIGFG---SGR--AFCAGGDIVSLYHFMNQ 102
           ++ P++ +N L+  + A+  ++      +  I      SG+  +F AG DI  +      
Sbjct: 28  IDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMI---AAC 84

Query: 103 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG--KTVFA 160
              +E     +        +    KP VA ++G  +GGG  +++   +R+A    KT+  
Sbjct: 85  KTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLG 144

Query: 161 TPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLN 197
            PE ++G  P AG +  L  L G      + LTG K+ 
Sbjct: 145 LPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIR 182

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 55/196 (28%), Positives = 74/196 (37%), Gaps = 26/196 (13%)

Query: 25  SSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG--FG 82
            S V+ +L   V   G        LNRP+  NALN  + A L   F             G
Sbjct: 1   PSLVSYELDGGVATIG--------LNRPAKRNALNDGLIAALRAAFARLPEGVRAVVLHG 52

Query: 83  SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL----YSFIYLLGTHLKPHVAILNGVTM 138
            G  FCAG D+  L        +   + + R      Y  +        P +A L+G  +
Sbjct: 53  EGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRV--------PVIAALHGAVV 104

Query: 139 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG--HLGEFLALTGAKL 196
           GGG  ++     RVA   T FA PE   G     G S  +  L G   + + + LTG   
Sbjct: 105 GGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD-MMLTGRVY 163

Query: 197 NGAEMMACGLATHYSV 212
           +  E    GLA  Y V
Sbjct: 164 DAQEGERLGLA-QYLV 178

Length = 255

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 36/210 (17%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGK 104
           LN P A NAL++ +  +L++L    E D N+      G GR F AG DI     F +  +
Sbjct: 17  LNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADI---KEFTSVTE 72

Query: 105 LEECKDFFRTLYSFIYLLGTHL--------KPHVAILNGVTMGGGAGVSIPGTFRVACGK 156
            E+         + +  LG           KP +A ++G  +GGG  +++    R A   
Sbjct: 73  AEQ--------ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATES 124

Query: 157 TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATHYSV 212
                PE  +G  P    +     LP ++G+  A    LT   + GAE +  GL      
Sbjct: 125 AKLGLPELNLGLIPGFAGT---QRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNG-VF 180

Query: 213 SEKLPLIEEEL---GKLVTDDPSVIEACLE 239
            E+  L+++      K+    P+   A LE
Sbjct: 181 PEE-TLLDDAKKLAKKIAGKSPATTRAVLE 209

Length = 257

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 30/178 (16%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNI------GFGSGRAFCAGGDIVSLYHFMN 101
             NRP+A NA+   M   L ++ +A   DP+I      G G  +AF AG DI     F  
Sbjct: 22  TFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAG-DKAFVAGTDIAQFRAF-- 78

Query: 102 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 161
               E+   + R +   +  L     P +A + G  +GGGA ++     R+       AT
Sbjct: 79  -STAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRI-------AT 130

Query: 162 PETLIGFHPDA-------GASFYLSHLPGHLG----EFLALTGAKLNGAEMMACGLAT 208
           P    GF P A         S   + L   LG    + +  T   L   E +A GL  
Sbjct: 131 PSARFGF-PIARTLGNCLSMSNL-ARLVALLGAARVKDMLFTARLLEAEEALAAGLVN 186

Length = 262

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 5/182 (2%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP   N  N  M  ++ +  +  E DP++ F     +G+ F  GGD+V +   +++  
Sbjct: 17  LNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDD 76

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
           ++        +    + +    KP +  ++G   G  A +++   F +A  KT F     
Sbjct: 77  VQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFV 136

Query: 165 LIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 223
            +G  PDAG  F L+   G +    LA+TG  L   + +  G     + SEKL    E+L
Sbjct: 137 GVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQL 196

Query: 224 GK 225
            K
Sbjct: 197 LK 198

Length = 255

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 16/199 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP   NA++  +  ++  +  A E D + G     G+G A+ AG D+   +   +   
Sbjct: 23  LNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQP 82

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
               +   R  Y +   L  + KP +A++NG   GGG    +     +A  +  F   E 
Sbjct: 83  EILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEI 142

Query: 165 LIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATHYSVSEKLPLIE--- 220
             G  P  G S  ++   GH    +  +TG    G +    GL     V+E +PL +   
Sbjct: 143 NWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGL-----VNESVPLAQLRA 197

Query: 221 ---EELGKLVTDDPSVIEA 236
              E   KL+  +P V+ A
Sbjct: 198 RTRELAAKLLEKNPVVLRA 216

Length = 275

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 20/201 (9%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQ-- 102
           L+R    NA N  M  +L       ++D ++ F    G GR F AG D+     +M Q  
Sbjct: 21  LSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLA----WMQQSA 76

Query: 103 -----GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
                  L++     R L   +Y L     P +A++ G   GG  G+       +     
Sbjct: 77  DLDYNTNLDDA----RELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDA 132

Query: 158 VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGL-ATHYSVSEKL 216
            F   E  IG  P   + F +  +        ALT  + +G      GL A  Y  +E  
Sbjct: 133 QFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAELE 192

Query: 217 PLIEEELGKLVTDDPSVIEAC 237
             +E  +  L+ + P  + A 
Sbjct: 193 AQVEAWIANLLLNSPQALRAS 213

Length = 265

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 15/183 (8%)

Query: 31  DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN----IGFGSGRA 86
            + +Q+ +E   +  +  L+ P  +NAL+  +  +L  +F      P+    +  G+G+ 
Sbjct: 1   MMMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKV 59

Query: 87  FCAGGDIVSLYHFMNQGKLEECKDFF---RTLYSFIYLLGTHLKPHVAILNGVTMGGGAG 143
           FCAG D+           ++   D     R      + +    KP +A +NG  +G G G
Sbjct: 60  FCAGADLKG-----RPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLG 114

Query: 144 VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMA 203
           +       VA    VF  PE  +G     G    +      L   + LTG ++  AE+  
Sbjct: 115 LVASCDIIVASENAVFGLPEIDVGLA--GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYR 172

Query: 204 CGL 206
            G+
Sbjct: 173 RGV 175

Length = 257

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 50/183 (27%), Positives = 76/183 (41%), Gaps = 24/183 (13%)

Query: 49  LNRPSALNALNTN-MGAKLNKLFKAWENDPN----IGFGSGRAFCAGGDIVSLY--HFMN 101
           +NRP   NAL+ N     L     A   D +    I  G+G AF +GG++  +       
Sbjct: 18  MNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAF 77

Query: 102 QGKLEECKDFFRTLYSFIYLLGTHLK-PHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 160
            G   + +  +R     I L   +L+ P +A +NG  +G G  ++     R+A     FA
Sbjct: 78  GGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFA 137

Query: 161 TPETLIGFHP-DAGASFYLSHLPGHLG-----EFLALTGAKLNGAEMMACGLATHYSVSE 214
                +G  P D GA      LP  +G     E +A TG  ++ A  +  GL     VS 
Sbjct: 138 ESFVKLGLIPGDGGAWL----LPRIIGMARAAE-MAFTGDAIDAATALEWGL-----VSR 187

Query: 215 KLP 217
            +P
Sbjct: 188 VVP 190

Length = 266

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 51/181 (28%), Positives = 72/181 (39%), Gaps = 21/181 (11%)

Query: 36  VLVEGKANSRMAILNRPSALNALN----TNMGAKLNKLFKAWENDPNIGF----GSGRAF 87
           VLVE +    +  +NRP A NA+N      + A L++L    + DP++      G+G  F
Sbjct: 5   VLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDEL----DADPDLSVGILTGAGGTF 60

Query: 88  CAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 147
           CAG D   L  F  +G+        R             KP +A + G  + GG  +++ 
Sbjct: 61  CAGMD---LKAFA-RGERPSIPG--RGFGGLT--ERPPRKPLIAAVEGYALAGGFELALA 112

Query: 148 GTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPGHLGEFLALTGAKLNGAEMMACGL 206
               VA     F  PE   G     G    L   +P H+   LALTG  L        GL
Sbjct: 113 CDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGL 172

Query: 207 A 207
            
Sbjct: 173 V 173

Length = 254

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 24/174 (13%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN-----IGFGSGRAFCAGGDIVSLYHFMNQG 103
           L+ P  +NA++ +M   L +   A E+        +  G+GR FC G ++        QG
Sbjct: 19  LDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANL--------QG 70

Query: 104 KLEECKDF---------FRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVA 153
           +    ++            T Y  F+  L     P V  +NG   G G   ++ G   + 
Sbjct: 71  RGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILC 130

Query: 154 CGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGL 206
                F      IG  PD G+++ L  L G      L+L G KL     +  GL
Sbjct: 131 ARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGL 184

Length = 266

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 38/205 (18%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYH-----F 99
           LNRP  LN +   M  ++       E D +I      G+GRAF  G D    +       
Sbjct: 20  LNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAM 79

Query: 100 MNQGKLEECKDFFRT-------LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRV 152
           M  G+ +  KDF             F+ +     KP +A ++G  +GG +  ++      
Sbjct: 80  MTDGRWDPGKDFAMVTARETGPTQKFMAIWRAS-KPVIAQVHGWCVGGASDYAL------ 132

Query: 153 ACGKTVFATPETLIGFHPDA---GA---SFYLSHLPGHLGEFLALTGAKLNGAEMMACGL 206
            C   V A+ + +IG  P +   GA     +L  L     ++ +LTG  L G +     L
Sbjct: 133 -CADIVIASDDAVIG-TPYSRMWGAYLTGMWLYRLSLAKVKWHSLTGRPLTGVQAAEAEL 190

Query: 207 ATHYSVSEKLPL--IEEELGKLVTD 229
                ++E +P   +E  + ++ T+
Sbjct: 191 -----INEAVPFERLEARVAEVATE 210

Length = 298

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 11/102 (10%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMN--- 101
           LNRP   NAL+  M A+L    +    D  +      G+G++FCAGGD+  +   M    
Sbjct: 20  LNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADR 79

Query: 102 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAG 143
             ++EE     R L   +  L    KP +  + G   GGG G
Sbjct: 80  ATRIEEA----RRLAMMLKALNDLPKPLIGRIQGQAFGGGVG 117

Length = 262

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIG---FGSGR-AFCAGGDI---VSLYHFM 100
             + P ++N  +    A L++   A +   ++      SG+ AF  G DI   + L+  +
Sbjct: 21  KFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLF-AL 79

Query: 101 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 160
              +L +   F  ++++ +  L     P VA +NG+ +GGG    +   FR+A       
Sbjct: 80  PDAELIQWLLFANSIFNKLEDLPV---PTVAAINGIALGGGCECVLATDFRIADDTAKIG 136

Query: 161 TPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 200
            PET +G  P  G +  L  + G       +   K N AE
Sbjct: 137 LPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAE 176

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN----IGFGSGRAFCA 89
            V VE        ILNRP   NA++    A L   F+A++ D      + +G+G  FCA
Sbjct: 3  MSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCA 62

Query: 90 GGD 92
          G D
Sbjct: 63 GAD 65

Length = 254

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 45/197 (22%), Positives = 69/197 (35%), Gaps = 51/197 (25%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQG 103
            LNRP   NA+  +   +L    +  + DP +      G+G+ FCAG D+ +     + G
Sbjct: 24  TLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSG 83

Query: 104 KLEECKDFFRTLYS----------------------FIYLLGTHLKPHVAILNGVTMGGG 141
                    R   +                      F+ L   H KP VA ++G  + GG
Sbjct: 84  GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAH-KPTVAKVHGYCVAGG 142

Query: 142 AGVSIPGTFRVACGKTVFATPETLIGFH-------PDAGASFYLSHLPGHLG----EFLA 190
             +++           V A  +  IG+        P  G   Y       LG    + L 
Sbjct: 143 TDIAL-------HCDQVIAADDAKIGYPPTRVWGVPATGMWAY------RLGPQRAKRLL 189

Query: 191 LTGAKLNGAEMMACGLA 207
            TG  + GA+    GLA
Sbjct: 190 FTGDCITGAQAAEWGLA 206

Length = 302

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 13/150 (8%)

Query: 37  LVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI------GFGSGRAFCAG 90
           +V G  N+ + IL+ P   N+  T+M   +   F+   +D ++        G  +AFC G
Sbjct: 32  VVPGLYNAWI-ILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGD-KAFCTG 89

Query: 91  GDIVSL--YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 148
           G+      Y+  N  +  +    F  + S I  LG   KP +  +NG+ +GGG  + +  
Sbjct: 90  GNTKEYAEYYAGNPQEYRQYMRLFNDMVSAI--LGCD-KPVICRVNGMRIGGGQEIGMAA 146

Query: 149 TFRVACGKTVFATPETLIGFHPDAGASFYL 178
            F +A     F       G  P  GA+ +L
Sbjct: 147 DFTIAQDLANFGQAGPKHGSAPIGGATDFL 176

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 50/174 (28%), Positives = 63/174 (36%), Gaps = 36/174 (20%)

Query: 82  GSGRAFCAGGDIVSLYHFMNQGKL----EECKDFFRTLYSFIYLLGTHLKPHVAILNGVT 137
             GR F AG DI  L        L      C   FR +Y           P +A ++G  
Sbjct: 53  AEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYE-------CAVPVIAAVHGFC 105

Query: 138 MGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL----PGHLGEFLALTG 193
           +GGG G+       VA     F  PE       D GA    +HL    P HL   L  T 
Sbjct: 106 LGGGIGLVGNADVIVASDDATFGLPEV------DRGALGAATHLQRLVPQHLMRALFFTA 159

Query: 194 AKLNGAEMMACGLATHYSVSEKLPLIEEEL--------GKLVTDDPSVIEACLE 239
           A +  AE+   G     SV E +P   ++L         K+   D  VI A  E
Sbjct: 160 ATITAAELHHFG-----SVEEVVP--RDQLDEAALEVARKIAAKDTRVIRAAKE 206

Length = 249

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 14/168 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP   N L     A+L  LF+      ++      G+G  FC+GGD+  +   + +  
Sbjct: 32  LNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMD 91

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
           + E   F R     +  +    +P +A ++GV  G GA +++    R+       A   T
Sbjct: 92  MPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFT 151

Query: 165 LIGFH-PDAGASFYLSHLP-----GHLGEFLALTGAKLNGAEMMACGL 206
            +G    D GA   L  LP     G   E L  TG  ++  E    G 
Sbjct: 152 RVGLAGADMGAC-AL--LPRIIGQGRASELL-YTGRSMSAEEGERWGF 195

Length = 277

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 49 LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGD 92
          LNRP A NAL+  M A L     A   DP++       +G+AFCAG D
Sbjct: 26 LNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHD 73

Length = 266

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 16/103 (15%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGD--IVSLYHFM 100
            +NRP   NA       ++ +       DP+IG     G+G +AFC+GGD  +   Y ++
Sbjct: 17  TINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYI 76

Query: 101 NQGKLEECK--DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGG 141
           +   +      D  R + +         KP +A++NG  +GGG
Sbjct: 77  DDSGVHRLNVLDVQRQIRTCP-------KPVIAMVNGYAIGGG 112

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 47/167 (28%), Positives = 63/167 (37%), Gaps = 11/167 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           L+ P   NAL+  + A+L+   +A   DP +       +G  FCAG D   L      G 
Sbjct: 21  LDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGAD---LSEAGGGGG 77

Query: 105 LEECKDFFRTLYSFIYLLGTHL---KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 161
                   R       LL   +   KP +A ++G    GG G+       VA  ++ FA 
Sbjct: 78  DPYDAAVARAR-EMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFAL 136

Query: 162 PETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLAT 208
            E  IG  P   +   L  L         LTG K   AE    GL T
Sbjct: 137 TEARIGVAPAIISLTLLPRLSPRAAARYYLTGEKFGAAEAARIGLVT 183

Length = 260

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGD 92
          +LN P ALNA +  M  +L  +++  + DP++      G G+AF AGGD
Sbjct: 26 VLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGD 74

Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.73
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.73
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	99.53
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.46
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.46
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.41
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.36
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.3
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.24
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.13
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.12
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	98.92
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.57
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.44
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.41
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.38
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.38
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.33
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.25
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.2
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	98.2
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.17
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.15
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.14
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.12
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.09
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	98.08
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.91
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	97.91
PRK10949	618	protease 4; Provisional	97.89
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.88
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	97.82
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.7
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.66
PRK11778	330	putative inner membrane peptidase; Provisional	97.53
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.5
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.46
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	97.37
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.32
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.23
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	97.19
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	97.16
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	96.98
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	96.97
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.92
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	96.89
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.79
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	96.47
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	96.14
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	95.86
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.53
PRK10949	618	protease 4; Provisional	94.71
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	93.36
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	92.97
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	92.96
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	92.51
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	90.8
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	89.94

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.1e-60  Score=460.02  Aligned_cols=321  Identities=69%  Similarity=1.129  Sum_probs=282.0

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      .+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++......+..+..
T Consensus        36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~  115 (401)
T PLN02157         36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI  115 (401)
T ss_pred             CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            4458899999999999999999999999999999999999999999987    889999999999998653222222223


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF  188 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~  188 (353)
                      ..++...+.+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+.+
T Consensus       116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~  195 (401)
T PLN02157        116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY  195 (401)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence            44555556677889999999999999999999999999999999999999999999999999999999999999966999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      |+|||+.++|+||+++|||+++||+++++...+.+.++...+|.++...|+.+.....+...........+..||+.+++
T Consensus       196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~  275 (401)
T PLN02157        196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTV  275 (401)
T ss_pred             HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCH
Confidence            99999999999999999999999999997777666888888999999999988765333334445557889999999999


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                      ++++++++....++.++|+++.++.|.+.||.|++.|.++++++...++.++++.|+++..+++....++||.|||+|.|
T Consensus       276 ~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~L  355 (401)
T PLN02157        276 EEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARL  355 (401)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            99999998655556789999999999999999999999999999999999999999999999873112599999999999


Q ss_pred             ccCCC
Q 018632          349 LNKHV  353 (353)
Q Consensus       349 ~~~~~  353 (353)
                      +|||+
T Consensus       356 iDKd~  360 (401)
T PLN02157        356 IDKDE  360 (401)
T ss_pred             cCCCC
Confidence            99974

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2e-59  Score=451.13  Aligned_cols=323  Identities=66%  Similarity=1.139  Sum_probs=284.1

Q ss_pred             CCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChH
Q 018632           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        31 ~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      ...+.|.++..+++++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++......++.+
T Consensus        39 ~~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~  118 (407)
T PLN02851         39 DLQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVE  118 (407)
T ss_pred             CCCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchH
Confidence            345568899999999999999999999999999999999999999999987    8899999999999987643222334


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHH
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG  186 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a  186 (353)
                      ....++...+.+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+
T Consensus       119 ~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g  198 (407)
T PLN02851        119 ECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLG  198 (407)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHH
Confidence            55667778888889999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      .+|+|||++++|+||+++||+++++|++++..+.+.+.++...++..+....+.|.....+...........|+.||+.+
T Consensus       199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~  278 (407)
T PLN02851        199 EYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD  278 (407)
T ss_pred             HHHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999987777777777777888888878776442222234455578999999999


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                      ++++|++.|+....+...+|++++++.|.+.||.|++.|+++++++...++.++++.|+++..+++....++||.|||+|
T Consensus       279 sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA  358 (407)
T PLN02851        279 TVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRA  358 (407)
T ss_pred             CHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            99999999997543335689999999999999999999999999999999999999999999988621137999999999


Q ss_pred             eeccCCC
Q 018632          347 QILNKHV  353 (353)
Q Consensus       347 fl~~~~~  353 (353)
                      .|+|||+
T Consensus       359 ~LIDKd~  365 (407)
T PLN02851        359 RLVDKDF  365 (407)
T ss_pred             HhcCCCC
Confidence            9999984

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=6.9e-59  Score=446.30  Aligned_cols=319  Identities=48%  Similarity=0.813  Sum_probs=278.0

Q ss_pred             ceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHH
Q 018632           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKD  110 (353)
Q Consensus        35 ~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~  110 (353)
                      .|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++    |.|++||+|+|++++......+.......
T Consensus        10 ~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~   89 (381)
T PLN02988         10 QVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN   89 (381)
T ss_pred             ceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence            47888899999999999999999999999999999999999999887    88999999999999864221221122234


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHH
Q 018632          111 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA  190 (353)
Q Consensus       111 ~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~  190 (353)
                      ++...+.+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+.+|+
T Consensus        90 ~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~l~  169 (381)
T PLN02988         90 FFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVG  169 (381)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHHHH
Confidence            44444556778899999999999999999999999999999999999999999999999999999999999998789999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHH
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  270 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (353)
                      |||++++|+||+++|||+++||+++++.....++++...+|..+...++.+...+.............|+.||+.+++++
T Consensus       170 LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~  249 (381)
T PLN02988        170 LTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEE  249 (381)
T ss_pred             HcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999999988888888888888889989998875542222344445889999999999999


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018632          271 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  350 (353)
Q Consensus       271 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~  350 (353)
                      |++.|+....+...+|++++++.|.+.||.|++.|+++++++...++.++++.|+++..+++....++||.|||+|.|+|
T Consensus       250 i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiD  329 (381)
T PLN02988        250 IISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVD  329 (381)
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhcC
Confidence            99999974322356899999999999999999999999999999999999999999999988511149999999999999


Q ss_pred             CCC
Q 018632          351 KHV  353 (353)
Q Consensus       351 ~~~  353 (353)
                      ||+
T Consensus       330 Kd~  332 (381)
T PLN02988        330 KDK  332 (381)
T ss_pred             CCC
Confidence            974

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=9.4e-57  Score=433.20  Aligned_cols=319  Identities=44%  Similarity=0.750  Sum_probs=273.5

Q ss_pred             CCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChH
Q 018632           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        31 ~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      +.++.+.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++......  ..
T Consensus         8 ~~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~--~~   85 (379)
T PLN02874          8 PAEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRES--DD   85 (379)
T ss_pred             CCCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhccc--ch
Confidence            445568889999999999999999999999999999999999999999997    889999999999987542111  12


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHH
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG  186 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a  186 (353)
                      ....+...++.+...+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        86 ~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a  165 (379)
T PLN02874         86 SCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLG  165 (379)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHH
Confidence            22233444556677899999999999999999999999999999999999999999999999999999999999999669


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      .+|+|||++++|+||+++|||++|||++++++....+.++...+...+...++.+.................+..||+.+
T Consensus       166 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~  245 (379)
T PLN02874        166 EYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD  245 (379)
T ss_pred             HHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC
Confidence            99999999999999999999999999998887666676666667777777777666543333445556688999999999


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                      ++.++++.+++..++...+|+.+++++|+++||.|++.+|++++.+...++.++++.|.......+....++||+||++|
T Consensus       246 ~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~A  325 (379)
T PLN02874        246 TVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRA  325 (379)
T ss_pred             CHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccce
Confidence            99999999998766667899999999999999999999999999988889999999998887766532237999999999


Q ss_pred             eeccC
Q 018632          347 QILNK  351 (353)
Q Consensus       347 fl~~~  351 (353)
                      |+.+|
T Consensus       326 flidK  330 (379)
T PLN02874        326 LVIDK  330 (379)
T ss_pred             EEEcC
Confidence            98433

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=6.1e-55  Score=415.87  Aligned_cols=308  Identities=38%  Similarity=0.654  Sum_probs=265.0

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      +.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++............
T Consensus         3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~   82 (342)
T PRK05617          3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA   82 (342)
T ss_pred             ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence            358899999999999999999999999999999999999999999988    888 899999999987653211111111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF  188 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~  188 (353)
                      ..++.....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..|++
T Consensus        83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~  162 (342)
T PRK05617         83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY  162 (342)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence            13444455678889999999999999999999999999999999999999999999999999999999999998844999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhh-cCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLV-TDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      |++||+.++|+||+++|||++|+|+++++...+.+.++- ....+.+.+.+..+....  ....+......|++||+..+
T Consensus       163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~  240 (342)
T PRK05617        163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPA--PASELAAQRAWIDECFAGDT  240 (342)
T ss_pred             HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCC--CcchhHHHHHHHHHHhCCCC
Confidence            999999999999999999999999988876655554332 334455666666654442  23367778889999999999


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                      +++++++|++.    ..+|+.+++++|+++||.|++.+|+++++....+++++++.|...+...+.   ++|++||+++|
T Consensus       241 ~~~~~~~l~~~----~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~egv~af  313 (342)
T PRK05617        241 VEDIIAALEAD----GGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLR---SPDFVEGVRAV  313 (342)
T ss_pred             HHHHHHHHHhc----cHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh---CCchhhccceE
Confidence            99999999998    348999999999999999999999999998888999999999999999887   99999999999


Q ss_pred             e-cc
Q 018632          348 I-LN  350 (353)
Q Consensus       348 l-~~  350 (353)
                      + ++
T Consensus       314 l~ek  317 (342)
T PRK05617        314 LIDK  317 (342)
T ss_pred             EEcC
Confidence            8 54

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=3.9e-54  Score=393.03  Aligned_cols=324  Identities=50%  Similarity=0.794  Sum_probs=298.3

Q ss_pred             CCCcCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CC-CCCcccCcchhhHHHhhh
Q 018632           27 SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GS-GRAFCAGGDIVSLYHFMN  101 (353)
Q Consensus        27 ~~~~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~-g~~F~aG~Dl~~~~~~~~  101 (353)
                      +...+..+.|.++.++...+||||||+.+||||.+|...+.-.|..++.++.+++    |. |++||+|+|++.......
T Consensus        31 ~~~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~  110 (401)
T KOG1684|consen   31 SVSTDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIK  110 (401)
T ss_pred             ccccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhh
Confidence            3445556789999999999999999999999999999999999999999999886    55 699999999998888777


Q ss_pred             cCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhc
Q 018632          102 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL  181 (353)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~  181 (353)
                      ++..+....|+...+.+...+.++.||.||.++|..||||++|+..--||||||++.|+|||..+|++|+.|++++++|+
T Consensus       111 d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrl  190 (401)
T KOG1684|consen  111 DKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRL  190 (401)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhC
Confidence            78888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcC-CHHHHHHHHHHhhcccCCChhhHHHHHHHHH
Q 018632          182 PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD-DPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  260 (353)
Q Consensus       182 ~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (353)
                      .|.-+.+|.|||.++++.||+.+||.++.||.++|..++++|.+.... +...+.+....|.....+.........+.|+
T Consensus       191 pg~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~  270 (401)
T KOG1684|consen  191 PGYLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVIN  270 (401)
T ss_pred             ccHHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHH
Confidence            997799999999999999999999999999999999999999644444 4478899999999887776666777899999


Q ss_pred             HhcCcCCHHHHHHHHHhcc-CCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 018632          261 KCFGLDTVEEIIDSLESEA-SLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD  339 (353)
Q Consensus       261 ~~~~~~~~~~i~~~l~~~~-~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d  339 (353)
                      .||+++++|+|++.|++-. .....+||++.++.|.+.||.|++.|.+.++.+...++++++..|+++..+...   ++|
T Consensus       271 ~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~---~~D  347 (401)
T KOG1684|consen  271 KCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLM---RGD  347 (401)
T ss_pred             HhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---ccc
Confidence            9999999999999886543 446779999999999999999999999999999999999999999999999887   999


Q ss_pred             hhhhhhheeccCCC
Q 018632          340 FYEVSNFQILNKHV  353 (353)
Q Consensus       340 ~~egi~afl~~~~~  353 (353)
                      |.||++|.|+|||.
T Consensus       348 F~EGvRA~LIDKd~  361 (401)
T KOG1684|consen  348 FCEGVRAVLIDKDQ  361 (401)
T ss_pred             hhhhhhheeecCCc
Confidence            99999999999984

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-52  Score=385.87  Aligned_cols=249  Identities=28%  Similarity=0.370  Sum_probs=223.8

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      +.|.++.+++|++||||||+++|++|.+|+.+|.++++.++.|++|++    |.| ++||+|.|++++............
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~   82 (260)
T PRK05980          3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL   82 (260)
T ss_pred             ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence            468899999999999999999999999999999999999999999988    888 799999999987542111112223


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  162 (260)
T PRK05980         83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRAL  162 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHH
Confidence            44555566788889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|+++|++++|+||+++||||+|+|++++.+.+.                                              
T Consensus       163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  196 (260)
T PRK05980        163 ELLLTGDAFSAERALEIGLVNAVVPHEELLPAAR----------------------------------------------  196 (260)
T ss_pred             HHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999887765433                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.+|.+++.+|++++.....++.++++.|...+...+.   ++|++||+++|
T Consensus       197 ---------------------~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af  252 (260)
T PRK05980        197 ---------------------ALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAG---SADLREGLAAW  252 (260)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence                                 448899999999999999999988888999999999999999887   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      +++|+
T Consensus       253 ~~kr~  257 (260)
T PRK05980        253 IERRR  257 (260)
T ss_pred             hccCC
Confidence            99986

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=4.5e-53  Score=375.37  Aligned_cols=244  Identities=25%  Similarity=0.306  Sum_probs=216.4

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ........+++|+.|+||||+++|+|+..++.+|.+++..++.|+.+.+    |.|++||+|.|++++....    ..+.
T Consensus        36 ~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~----~~~~  111 (290)
T KOG1680|consen   36 IKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDE----FQDV  111 (290)
T ss_pred             ceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcc----cccc
Confidence            3344555678999999999999999999999999999999999999988    9999999999999987631    1110


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                        ....+...+..+.+.+||+||+|||+|+|||++|+++||+|||+++|+|++|+.++|++|.+|++++|+|.+|.+ |+
T Consensus       112 --~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Al  189 (290)
T KOG1680|consen  112 --SDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRAL  189 (290)
T ss_pred             --ccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHH
Confidence              111122233444479999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      ++++||++++|+||+++|||++|+|.+++...+.                                              
T Consensus       190 e~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv----------------------------------------------  223 (290)
T KOG1680|consen  190 EMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAV----------------------------------------------  223 (290)
T ss_pred             HHHHhcCcccHHHHHhCCceeEeecchhHHHHHH----------------------------------------------
Confidence            9999999999999999999999999998654333                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++.+|+++||.+++..|+.++.+.+.++.++++.|...+...+.   .+|.+|||.+|
T Consensus       224 ---------------------~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~---~~d~~Eg~~~f  279 (290)
T KOG1680|consen  224 ---------------------KLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFA---TEDRLEGMTAF  279 (290)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhh---hHHHHHHHHHh
Confidence                                 459999999999999999999999999999999999999999888   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      .++|+
T Consensus       280 ~~kr~  284 (290)
T KOG1680|consen  280 AEKRK  284 (290)
T ss_pred             cccCC
Confidence            99985

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-51  Score=380.11  Aligned_cols=246  Identities=20%  Similarity=0.252  Sum_probs=221.5

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      |+..+.++++++|++||||||++ |++|.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++...    +..
T Consensus         1 ~~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~----~~~   75 (258)
T PRK09076          1 MMIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG----DKA   75 (258)
T ss_pred             CceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc----Chh
Confidence            35568999999999999999985 99999999999999999999999988    888 789999999987541    222


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                      ....+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~  155 (258)
T PRK09076         76 VAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGW  155 (258)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHH
Confidence            2233445566788889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      +++|+++|++++|+||+++|||++|+|++++.+.+.                                            
T Consensus       156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  191 (258)
T PRK09076        156 AKRMILCGERVDAATALRIGLVEEVVEKGEAREAAL--------------------------------------------  191 (258)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHH--------------------------------------------
Confidence            999999999999999999999999999887764333                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                                             +++++|++++|.+++.+|++++.....++.+.++.|...+...+.   ++|++||++
T Consensus       192 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~eg~~  245 (258)
T PRK09076        192 -----------------------ALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFD---TEDQREGVN  245 (258)
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CchHHHHHH
Confidence                                   458999999999999999999988888999999999999988887   999999999


Q ss_pred             heeccCC
Q 018632          346 FQILNKH  352 (353)
Q Consensus       346 afl~~~~  352 (353)
                      +|+++|+
T Consensus       246 af~~kr~  252 (258)
T PRK09076        246 AFLEKRA  252 (258)
T ss_pred             HHhcCCC
Confidence            9999986

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=1.1e-51  Score=383.41  Aligned_cols=250  Identities=22%  Similarity=0.283  Sum_probs=218.8

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|.|++++............
T Consensus         7 ~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   86 (275)
T PRK09120          7 WDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQ   86 (275)
T ss_pred             cccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHH
Confidence            6679999999999999999999999999999999999999999999998    899999999999987542111111112


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~  166 (275)
T PRK09120         87 ERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDAL  166 (275)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHH
Confidence            22334456678889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|+++|+.++|+||+++|||++|+|++++++.+.                                              
T Consensus       167 ~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  200 (275)
T PRK09120        167 YYIMTGETFTGRKAAEMGLVNESVPLAQLRARTR----------------------------------------------  200 (275)
T ss_pred             HHHhcCCccCHHHHHHcCCcceecCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988875444                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHH--HHhhhcCCCC-Chhhhh
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS--LQGVSRLISG-DFYEVS  344 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~--~~~~~~~~~~-d~~egi  344 (353)
                                           +++++|++.||.+++.+|++++.....++.++++.|....  ...+.   ++ |++||+
T Consensus       201 ---------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~d~~eg~  256 (275)
T PRK09120        201 ---------------------ELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLD---PEGGREEGL  256 (275)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC---CHHHHHHHH
Confidence                                 4489999999999999999999988889999998876543  33454   78 899999


Q ss_pred             hheeccCC
Q 018632          345 NFQILNKH  352 (353)
Q Consensus       345 ~afl~~~~  352 (353)
                      ++|+++|+
T Consensus       257 ~afl~kr~  264 (275)
T PRK09120        257 KQFLDDKS  264 (275)
T ss_pred             HHHHhccc
Confidence            99999985

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-51  Score=378.20  Aligned_cols=243  Identities=25%  Similarity=0.230  Sum_probs=218.0

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      +.|.++++++|++||||||++.|+||.+|+.+|.++++.++  +++++    |.|++||+|+|++++...    +.....
T Consensus         2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~----~~~~~~   75 (255)
T PRK08150          2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRER----DAGEGM   75 (255)
T ss_pred             ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhc----cchhHH
Confidence            46889999999999999999999999999999999999998  66666    999999999999987542    111222


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      .+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus        76 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~  155 (255)
T PRK08150         76 HHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD  155 (255)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence            3345566788889999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      |++||++++|+||+++||||+|+|++++.+.+.                                               
T Consensus       156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------------  188 (255)
T PRK08150        156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAM-----------------------------------------------  188 (255)
T ss_pred             HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999988765443                                               


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                                          +++++|+++||.+++.+|++++.....+++++++.|...+...+.   ++|++||+++|+
T Consensus       189 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~af~  245 (255)
T PRK08150        189 --------------------ELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQS---APEAKERLRAFL  245 (255)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHh
Confidence                                448999999999999999999988888999999999988877776   999999999999


Q ss_pred             ccCC
Q 018632          349 LNKH  352 (353)
Q Consensus       349 ~~~~  352 (353)
                      ++|+
T Consensus       246 ~kr~  249 (255)
T PRK08150        246 EKKA  249 (255)
T ss_pred             ccCC
Confidence            9975

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-51  Score=379.97  Aligned_cols=251  Identities=21%  Similarity=0.293  Sum_probs=225.0

Q ss_pred             cCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCC
Q 018632           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGK  104 (353)
Q Consensus        30 ~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~  104 (353)
                      ..+.+.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++....  .+
T Consensus         7 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~--~~   84 (269)
T PRK06127          7 SSPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR--SD   84 (269)
T ss_pred             CCCCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc--cc
Confidence            3444568999999999999999999999999999999999999999999988    887 7999999999875421  12


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       105 ~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      .+....+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        85 ~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  164 (269)
T PRK06127         85 AEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGP  164 (269)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCH
Confidence            22233455556678888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . +++|++||++++|+||+++|||++|+|++++++.+.                                          
T Consensus       165 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------  202 (269)
T PRK06127        165 SAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALA------------------------------------------  202 (269)
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999888765444                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                                               +++++|++.+|.+++.+|++++.....++.+.++.|...+...+.   ++|++||
T Consensus       203 -------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e~  254 (269)
T PRK06127        203 -------------------------DYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFD---SEDYREG  254 (269)
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---ChHHHHH
Confidence                                     348999999999999999999988888999999999999988887   9999999


Q ss_pred             hhheeccCC
Q 018632          344 SNFQILNKH  352 (353)
Q Consensus       344 i~afl~~~~  352 (353)
                      +.+|+++|+
T Consensus       255 ~~af~ekr~  263 (269)
T PRK06127        255 RAAFMEKRK  263 (269)
T ss_pred             HHHHhcCCC
Confidence            999999985

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-51  Score=378.88  Aligned_cols=249  Identities=23%  Similarity=0.349  Sum_probs=223.6

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      +.+.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++    |.|++||+|+|++++.......+.....
T Consensus         2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   81 (255)
T PRK07260          2 EHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLV   81 (255)
T ss_pred             CceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHH
Confidence            357888999999999999999999999999999999999999999987    8899999999999886432222222233


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      .+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus        82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~  161 (255)
T PRK07260         82 KIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATH  161 (255)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHH
Confidence            3445567788899999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      |+++|++++|+||+++||||+++|++++.+.+.                                               
T Consensus       162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------------  194 (255)
T PRK07260        162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCE-----------------------------------------------  194 (255)
T ss_pred             HHHhCCccCHHHHHHcCCcceecCHhHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999888765443                                               


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                                          +++++|++.+|.+++.+|++++.....++++.++.|...+...+.   ++|++||+++|+
T Consensus       195 --------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af~  251 (255)
T PRK07260        195 --------------------QLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAF---KEDFKEGVRAFS  251 (255)
T ss_pred             --------------------HHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence                                448999999999999999999988888999999999999888887   999999999999


Q ss_pred             ccCC
Q 018632          349 LNKH  352 (353)
Q Consensus       349 ~~~~  352 (353)
                      ++|+
T Consensus       252 ~kr~  255 (255)
T PRK07260        252 ERRR  255 (255)
T ss_pred             hcCC
Confidence            9985

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-51  Score=381.21  Aligned_cols=249  Identities=23%  Similarity=0.280  Sum_probs=222.1

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhh-------c
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMN-------Q  102 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~-------~  102 (353)
                      +.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|++|++    |.|++||+|.|++++.....       .
T Consensus         6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~   85 (272)
T PRK06142          6 ESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLA   85 (272)
T ss_pred             ceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccc
Confidence            458899999999999999999999999999999999999999999987    98999999999998754210       0


Q ss_pred             CChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcC
Q 018632          103 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  182 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~  182 (353)
                      ........+...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~  165 (272)
T PRK06142         86 RPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRII  165 (272)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHh
Confidence            11122333445567788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHH
Q 018632          183 GHL-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  260 (353)
Q Consensus       183 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (353)
                      |.. +++|+++|++++|+||+++||||+|+|+ +++.+.+.                                       
T Consensus       166 G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~---------------------------------------  206 (272)
T PRK06142        166 GDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAH---------------------------------------  206 (272)
T ss_pred             CHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHH---------------------------------------
Confidence            999 9999999999999999999999999986 66664333                                       


Q ss_pred             HhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 018632          261 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDF  340 (353)
Q Consensus       261 ~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~  340 (353)
                                                  +++++|++.||.+++.+|++++.....++.++++.|...+...+.   ++|+
T Consensus       207 ----------------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~---~~d~  255 (272)
T PRK06142        207 ----------------------------ATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLP---SKDL  255 (272)
T ss_pred             ----------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CccH
Confidence                                        348999999999999999999988888999999999999988887   9999


Q ss_pred             hhhhhheeccCC
Q 018632          341 YEVSNFQILNKH  352 (353)
Q Consensus       341 ~egi~afl~~~~  352 (353)
                      +||+.+|+++|+
T Consensus       256 ~egv~af~~kr~  267 (272)
T PRK06142        256 TEAIAAHMEKRP  267 (272)
T ss_pred             HHHHHHHhcCCC
Confidence            999999999985

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-51  Score=378.37  Aligned_cols=243  Identities=25%  Similarity=0.329  Sum_probs=219.3

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      +.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++    |.|++||+|+|++++...    +.  ..
T Consensus         4 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~----~~--~~   77 (257)
T PRK05862          4 ETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADL----SF--MD   77 (257)
T ss_pred             ceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhcc----ch--hH
Confidence            458889999999999999999999999999999999999999999988    889999999999987542    11  11


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      .+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +.+
T Consensus        78 ~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  157 (257)
T PRK05862         78 VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMD  157 (257)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence            2223344567788999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      |+++|+.++|+||+++||||+|+|++++.+.+.                                               
T Consensus       158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------------  190 (257)
T PRK05862        158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEAL-----------------------------------------------  190 (257)
T ss_pred             HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999887765443                                               


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                                          +++++|++.+|.+++.+|++++.....++.++++.|...+...+.   ++|++||+++|+
T Consensus       191 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~~~~e~i~af~  247 (257)
T PRK05862        191 --------------------AAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFA---TEDQKEGMAAFV  247 (257)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHh
Confidence                                348899999999999999999988888999999999999999887   999999999999


Q ss_pred             ccCC
Q 018632          349 LNKH  352 (353)
Q Consensus       349 ~~~~  352 (353)
                      ++|+
T Consensus       248 ~kr~  251 (257)
T PRK05862        248 EKRK  251 (257)
T ss_pred             ccCC
Confidence            9985

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-51  Score=379.70  Aligned_cols=251  Identities=21%  Similarity=0.325  Sum_probs=221.8

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhc--CC
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNT-NMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQ--GK  104 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~-~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~--~~  104 (353)
                      |++.+.++++++|++||||||++.|++|. +|+.+|.++++.++.|++|++    |.|++||+|.|++++......  ..
T Consensus         1 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (266)
T PRK09245          1 MTDFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGS   80 (266)
T ss_pred             CCCceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence            44568999999999999999999999995 999999999999999999987    999999999999987542110  01


Q ss_pred             hHH-HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcCh
Q 018632          105 LEE-CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  183 (353)
Q Consensus       105 ~~~-~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g  183 (353)
                      ... ...+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG  160 (266)
T PRK09245         81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG  160 (266)
T ss_pred             chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh
Confidence            111 1223334556788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHh
Q 018632          184 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  262 (353)
Q Consensus       184 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
                      .. +++|+++|++++|+||+++||||+|+|++++++.+.                                         
T Consensus       161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------  199 (266)
T PRK09245        161 MARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAAR-----------------------------------------  199 (266)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHH-----------------------------------------
Confidence            99 999999999999999999999999999888765443                                         


Q ss_pred             cCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018632          263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  342 (353)
Q Consensus       263 ~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  342 (353)
                                                +++++|++.||.+++.+|++++.....++++.++.|...+...+.   ++|++|
T Consensus       200 --------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e  250 (266)
T PRK09245        200 --------------------------ALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHH---TADHRE  250 (266)
T ss_pred             --------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHhHHH
Confidence                                      348999999999999999999988888899999999988888887   999999


Q ss_pred             hhhheeccCC
Q 018632          343 VSNFQILNKH  352 (353)
Q Consensus       343 gi~afl~~~~  352 (353)
                      |+++|+++|+
T Consensus       251 g~~af~~kr~  260 (266)
T PRK09245        251 AVDAFLEKRP  260 (266)
T ss_pred             HHHHHHcCCC
Confidence            9999999985

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=2.2e-51  Score=377.74  Aligned_cols=243  Identities=23%  Similarity=0.303  Sum_probs=219.7

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      ..|.++++++|++||||||+++|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...    +.  ..
T Consensus         2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~--~~   75 (255)
T PRK09674          2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK----DL--AA   75 (255)
T ss_pred             ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhcc----ch--hh
Confidence            467889999999999999999999999999999999999999999987    999999999999987531    11  11


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      .+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus        76 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~  155 (255)
T PRK09674         76 TLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ  155 (255)
T ss_pred             hHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence            2223345677889999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      ++++|+.++|+||+++||||+|+|++++.+.+.                                               
T Consensus       156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~-----------------------------------------------  188 (255)
T PRK09674        156 MVLTGESITAQQAQQAGLVSEVFPPELTLERAL-----------------------------------------------  188 (255)
T ss_pred             HHHcCCccCHHHHHHcCCCcEecChHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999887764333                                               


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                                          +.+++|++.||.+++.+|++++.....++.++++.|...+...+.   ++|+++|+++|+
T Consensus       189 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~i~af~  245 (255)
T PRK09674        189 --------------------QLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAA---TEDRHEGISAFL  245 (255)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHh
Confidence                                458999999999999999999988888999999999999988887   999999999999


Q ss_pred             ccCC
Q 018632          349 LNKH  352 (353)
Q Consensus       349 ~~~~  352 (353)
                      ++|+
T Consensus       246 ~kr~  249 (255)
T PRK09674        246 EKRT  249 (255)
T ss_pred             ccCC
Confidence            9975

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-51  Score=377.40  Aligned_cols=244  Identities=21%  Similarity=0.291  Sum_probs=219.3

Q ss_pred             CceEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHH
Q 018632           34 NQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        34 ~~v~~~-~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      ..+.++ .+++|++||||||++.|++|.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++...    +...
T Consensus         6 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~~   81 (256)
T PRK06143          6 AHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL----DQAS   81 (256)
T ss_pred             ccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc----Chhh
Confidence            346667 468899999999999999999999999999999999999988    888 799999999987542    2223


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|.. +
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a  160 (256)
T PRK06143         82 AEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWART  160 (256)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHH
Confidence            3445566677888999999999999999999999999999999999999999999999998 7888899999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|+++|+.++|+||+++||||+|+|++++.+.+.                                             
T Consensus       161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  195 (256)
T PRK06143        161 RWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVE---------------------------------------------  195 (256)
T ss_pred             HHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888765443                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|+.+||.+++.+|++++......+.++++.|...+...+.   ++|++||+++
T Consensus       196 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~e~~~a  250 (256)
T PRK06143        196 ----------------------RLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFL---TGEPQRHMAA  250 (256)
T ss_pred             ----------------------HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence                                  448999999999999999999988888999999999999988887   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |+++|+
T Consensus       251 f~ekr~  256 (256)
T PRK06143        251 FLNRKR  256 (256)
T ss_pred             HHhhcC
Confidence            999975

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.2e-51  Score=380.07  Aligned_cols=248  Identities=21%  Similarity=0.275  Sum_probs=222.1

Q ss_pred             ceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHH
Q 018632           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKD  110 (353)
Q Consensus        35 ~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~  110 (353)
                      .+.++.+++|++|+||||++.|+++.+|+.+|.++++.++.|+++++    |.|++||+|+|++++.......+......
T Consensus        18 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   97 (277)
T PRK08258         18 HFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA   97 (277)
T ss_pred             ceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence            58899999999999999999999999999999999999999999987    88999999999998753211112223334


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCccccc-CccHHHHHhhcChHH-HHH
Q 018632          111 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       111 ~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p-~~g~~~~l~r~~g~~-a~~  188 (353)
                      +...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|.. +++
T Consensus        98 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~  177 (277)
T PRK08258         98 FTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASE  177 (277)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHH
Confidence            555566788899999999999999999999999999999999999999999999999995 778999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      |+++|++++|+||+++||||+|+|++++++.+.                                               
T Consensus       178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------------  210 (277)
T PRK08258        178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQ-----------------------------------------------  210 (277)
T ss_pred             HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999887765433                                               


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                                          +++++|++.||.+++.+|++++.....++++.++.|...+..++.   ++|++||+++|+
T Consensus       211 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~eg~~af~  267 (277)
T PRK08258        211 --------------------ALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQ---TEDFRRAYEAFV  267 (277)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh
Confidence                                448999999999999999999988888999999999999988887   999999999999


Q ss_pred             ccCC
Q 018632          349 LNKH  352 (353)
Q Consensus       349 ~~~~  352 (353)
                      ++|+
T Consensus       268 ekr~  271 (277)
T PRK08258        268 AKRK  271 (277)
T ss_pred             cCCC
Confidence            9985

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.1e-51  Score=377.51  Aligned_cols=249  Identities=23%  Similarity=0.288  Sum_probs=219.3

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++ |+++++    |.|++||+|+|++++.........+..
T Consensus         3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (262)
T PRK08140          3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG   81 (262)
T ss_pred             CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence            346889999999999999999999999999999999999999 999888    999999999999987532100111111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~  161 (262)
T PRK08140         82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARAL  161 (262)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHH
Confidence            12222234577889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|+++|++++|+||+++||||+|+|++++.+.+.                                              
T Consensus       162 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  195 (262)
T PRK08140        162 GLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQ----------------------------------------------  195 (262)
T ss_pred             HHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999888764333                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.+|.+++.+|++++.....++.++++.|...+...+.   ++|++||+++|
T Consensus       196 ---------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af  251 (262)
T PRK08140        196 ---------------------QLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGR---SADYAEGVSAF  251 (262)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence                                 448999999999999999999988888999999999999988887   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      +++|+
T Consensus       252 ~~kr~  256 (262)
T PRK08140        252 LEKRA  256 (262)
T ss_pred             hcCCC
Confidence            99985

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-51  Score=377.23  Aligned_cols=247  Identities=21%  Similarity=0.317  Sum_probs=223.3

Q ss_pred             CCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCCh
Q 018632           32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKL  105 (353)
Q Consensus        32 ~~~~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~  105 (353)
                      |.+.|.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++    |.| ++||+|+|++++...    +.
T Consensus         1 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~----~~   76 (260)
T PRK07657          1 MLQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM----NE   76 (260)
T ss_pred             CCceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC----Ch
Confidence            345788886 78999999999999999999999999999999999999988    888 599999999987531    22


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH
Q 018632          106 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  185 (353)
Q Consensus       106 ~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~  185 (353)
                      .....+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~  156 (260)
T PRK07657         77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG  156 (260)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHH
Confidence            23344555667788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcC
Q 018632          186 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  264 (353)
Q Consensus       186 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (353)
                       +++|+++|++++|+||+++|||++|+|++++++.+.                                           
T Consensus       157 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------  193 (260)
T PRK07657        157 RAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI-------------------------------------------  193 (260)
T ss_pred             HHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999888765443                                           


Q ss_pred             cCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018632          265 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS  344 (353)
Q Consensus       265 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi  344 (353)
                                              +++++|+..+|.+++.+|++++.....++.++++.|...+...+.   ++|++||+
T Consensus       194 ------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~  246 (260)
T PRK07657        194 ------------------------EIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIP---TKDRLEGL  246 (260)
T ss_pred             ------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CHhHHHHH
Confidence                                    348999999999999999999988888999999999999998887   99999999


Q ss_pred             hheeccCC
Q 018632          345 NFQILNKH  352 (353)
Q Consensus       345 ~afl~~~~  352 (353)
                      ++|+++|+
T Consensus       247 ~af~~~r~  254 (260)
T PRK07657        247 QAFKEKRK  254 (260)
T ss_pred             HHHhcCCC
Confidence            99999985

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.4e-51  Score=375.85  Aligned_cols=248  Identities=21%  Similarity=0.271  Sum_probs=224.2

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      ..+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++..... .......
T Consensus         3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~-~~~~~~~   81 (260)
T PRK07511          3 AELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRA-KPPSVQA   81 (260)
T ss_pred             CeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhccc-ccchhHH
Confidence            457889999999999999999999999999999999999999999988    88999999999998764211 1223334


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      .+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus        82 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~  161 (260)
T PRK07511         82 ASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATE  161 (260)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHH
Confidence            4566777888999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      |+++|++++|+||+++||||+|+|++++.+.+.                                               
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~-----------------------------------------------  194 (260)
T PRK07511        162 LLLEGKPISAERLHALGVVNRLAEPGQALAEAL-----------------------------------------------  194 (260)
T ss_pred             HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999887654332                                               


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                                          +++++|++.+|.+++.+|+.++.....++.++++.|...+...+.   ++|+++|+++|+
T Consensus       195 --------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~i~~f~  251 (260)
T PRK07511        195 --------------------ALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLH---HADALEGIAAFL  251 (260)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh
Confidence                                348889999999999999999988888999999999999999887   999999999999


Q ss_pred             ccCC
Q 018632          349 LNKH  352 (353)
Q Consensus       349 ~~~~  352 (353)
                      ++|+
T Consensus       252 ~~r~  255 (260)
T PRK07511        252 EKRA  255 (260)
T ss_pred             ccCC
Confidence            9986

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=5.2e-51  Score=376.41  Aligned_cols=246  Identities=27%  Similarity=0.371  Sum_probs=222.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      ++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++    |.| ++||+|+|++++...    +...
T Consensus         3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~----~~~~   78 (260)
T PRK05809          3 LKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL----NEEE   78 (260)
T ss_pred             cceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc----ChHH
Confidence            3568899999999999999999999999999999999999999999988    888 999999999987542    1222


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ...+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  158 (260)
T PRK05809         79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA  158 (260)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            233444556788889999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|+++|+.++|+||+++||||+|+|++++.+.+.                                             
T Consensus       159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  193 (260)
T PRK05809        159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAK---------------------------------------------  193 (260)
T ss_pred             HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999887764333                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.+|.+++.+|++++.....++.++++.|.+.+...+.   ++|++||+++
T Consensus       194 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~egi~a  248 (260)
T PRK05809        194 ----------------------ALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFS---TEDQTEGMTA  248 (260)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence                                  458999999999999999999998888999999999999999987   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |+++|+
T Consensus       249 f~~~r~  254 (260)
T PRK05809        249 FVEKRE  254 (260)
T ss_pred             HhcCCC
Confidence            999985

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.4e-51  Score=375.93  Aligned_cols=247  Identities=24%  Similarity=0.283  Sum_probs=216.2

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      +.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.......... ..
T Consensus         5 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~-~~   83 (263)
T PRK07799          5 PHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFK-DG   83 (263)
T ss_pred             ceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhh-hh
Confidence            458899999999999999999999999999999999999999999988    8899999999999876431100000 00


Q ss_pred             HH-HHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          110 DF-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       110 ~~-~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      .+ ...+.. +..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        84 ~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  162 (263)
T PRK07799         84 SYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVAC  162 (263)
T ss_pred             hhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHH
Confidence            01 112222 3346789999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||++++|+||+++||||+|+|++++.+.+.                                              
T Consensus       163 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  196 (263)
T PRK07799        163 DLLLTGRHITAAEAKEIGLIGHVVPDGQALDKAL----------------------------------------------  196 (263)
T ss_pred             HHHHcCCCCCHHHHHHcCCccEecCcchHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988764332                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.||.+++.+|++++.....++.++++.|...+...+.   ++|++||+++|
T Consensus       197 ---------------------~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~af  252 (263)
T PRK07799        197 ---------------------ELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFL---SEDAKEGPRAF  252 (263)
T ss_pred             ---------------------HHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CccHHHHHHHH
Confidence                                 348999999999999999999988888999999999999988887   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      +++|+
T Consensus       253 ~~~r~  257 (263)
T PRK07799        253 AEKRA  257 (263)
T ss_pred             HccCC
Confidence            99975

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-51  Score=376.41  Aligned_cols=243  Identities=20%  Similarity=0.187  Sum_probs=214.2

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDF  111 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  111 (353)
                      |.++.+++|++||||||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.......    ...+
T Consensus         1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~----~~~~   76 (255)
T PRK06563          1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG----GFPF   76 (255)
T ss_pred             CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc----hhhh
Confidence            4678899999999999999999999999999999999999999987    8999999999999875421111    1111


Q ss_pred             HHHHHH-HHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHH
Q 018632          112 FRTLYS-FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  189 (353)
Q Consensus       112 ~~~~~~-l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l  189 (353)
                      .....+ +...+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|
T Consensus        77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  156 (255)
T PRK06563         77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY  156 (255)
T ss_pred             hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence            111122 23357889999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHH
Q 018632          190 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  269 (353)
Q Consensus       190 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (353)
                      ++||+.++|+||+++||||+|+|++++.+.+.                                                
T Consensus       157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------  188 (255)
T PRK06563        157 LLTGDEFDAQEALRLGLVQEVVPPGEQLERAI------------------------------------------------  188 (255)
T ss_pred             HHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999887764333                                                


Q ss_pred             HHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 018632          270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL  349 (353)
Q Consensus       270 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~  349 (353)
                                         +++++|++.+|.+++.+|++++.....++.++++.|...+...+.   ++|++||+++|++
T Consensus       189 -------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~~  246 (255)
T PRK06563        189 -------------------ELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFT---SEDAKEGVQAFLE  246 (255)
T ss_pred             -------------------HHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHhc
Confidence                               448999999999999999999988888999999999999988887   9999999999999


Q ss_pred             cCC
Q 018632          350 NKH  352 (353)
Q Consensus       350 ~~~  352 (353)
                      +|+
T Consensus       247 kr~  249 (255)
T PRK06563        247 RRP  249 (255)
T ss_pred             CCC
Confidence            985

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=7.9e-51  Score=375.96  Aligned_cols=247  Identities=20%  Similarity=0.254  Sum_probs=221.8

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      ..+.+.++.+++|++||||||+++|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...   .+.+.
T Consensus         9 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~~   85 (266)
T PRK08139          9 EAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAA---RGLAY   85 (266)
T ss_pred             cCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcc---cchhH
Confidence            34578899999999999999999999999999999999999999999988    899999999999987542   12223


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ...++..+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|++++|.. |
T Consensus        86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A  164 (266)
T PRK08139         86 FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA  164 (266)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence            344455667788899999999999999999999999999999999999999999999999999775 56799999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|+++|++++|+||+++||||+|+|++++++.+.                                             
T Consensus       165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  199 (266)
T PRK08139        165 MEMLLTGEFIDAATAREWGLVNRVVPADALDAAVA---------------------------------------------  199 (266)
T ss_pred             HHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888765443                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.+|.+++.+|++++.....++.++++.|...+...+.   ++|++||+++
T Consensus       200 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~a  254 (266)
T PRK08139        200 ----------------------RLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMM---AEDAEEGIDA  254 (266)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CchHHHHHHH
Confidence                                  348999999999999999999998888999999999999888887   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |+++|+
T Consensus       255 f~~kr~  260 (266)
T PRK08139        255 FLEKRP  260 (266)
T ss_pred             HhcCCC
Confidence            999975

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=5.9e-51  Score=375.16  Aligned_cols=245  Identities=24%  Similarity=0.293  Sum_probs=217.1

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDF  111 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  111 (353)
                      |.++++++|++||||||++.|++|.+|+.+|.++++.++.|+ +++    |.|++||+|+|++++.... ....+....+
T Consensus         1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~-~~~~~~~~~~   78 (256)
T TIGR02280         1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTP-GGAPDLGRTI   78 (256)
T ss_pred             CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhcc-ccchhHHHHH
Confidence            457889999999999999999999999999999999999998 887    8899999999999875421 1111111122


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHH
Q 018632          112 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  190 (353)
Q Consensus       112 ~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~  190 (353)
                      ...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus        79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~  158 (256)
T TIGR02280        79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA  158 (256)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            22234577889999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHH
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  270 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (353)
                      ++|++++|+||+++|||++|+|++++.+.+.                                                 
T Consensus       159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------  189 (256)
T TIGR02280       159 MLGEKLDARTAASWGLIWQVVDDAALMDEAQ-------------------------------------------------  189 (256)
T ss_pred             HcCCCCCHHHHHHcCCcceeeChHHHHHHHH-------------------------------------------------
Confidence            9999999999999999999999888764433                                                 


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018632          271 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  350 (353)
Q Consensus       271 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~  350 (353)
                                        +++++|++.||.+++.+|++++......+.++++.|...+...+.   ++|++||+++|+++
T Consensus       190 ------------------~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~~k  248 (256)
T TIGR02280       190 ------------------ALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGR---SADYAEGVTAFLDK  248 (256)
T ss_pred             ------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHHcC
Confidence                              448999999999999999999988888999999999999988887   99999999999999


Q ss_pred             CC
Q 018632          351 KH  352 (353)
Q Consensus       351 ~~  352 (353)
                      |+
T Consensus       249 r~  250 (256)
T TIGR02280       249 RN  250 (256)
T ss_pred             CC
Confidence            85

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=6.8e-51  Score=378.28  Aligned_cols=247  Identities=24%  Similarity=0.305  Sum_probs=218.0

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhc---CC----
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQ---GK----  104 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~---~~----  104 (353)
                      +..+.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++    |.|++||+|+|++++......   .+    
T Consensus        10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   89 (275)
T PLN02664         10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS   89 (275)
T ss_pred             EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence            5555689999999999999999999999999999999999999988    999999999999987542110   01    


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       105 ~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      .+....+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  169 (275)
T PLN02664         90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY  169 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence            11223334455677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHh
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  262 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
                      . |++|++||+.++|+||+++||||+|+|+ +++++...                                         
T Consensus       170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~-----------------------------------------  208 (275)
T PLN02664        170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVR-----------------------------------------  208 (275)
T ss_pred             HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHH-----------------------------------------
Confidence            9 9999999999999999999999999985 66654333                                         


Q ss_pred             cCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018632          263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  342 (353)
Q Consensus       263 ~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  342 (353)
                                                +++++|++.+|.+++.+|++++.....++.++++.|...+...+.   ++|++|
T Consensus       209 --------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e  259 (275)
T PLN02664        209 --------------------------LIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLV---SDDLNE  259 (275)
T ss_pred             --------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---ChhHHH
Confidence                                      458999999999999999999988888999999999988887776   999999


Q ss_pred             hhhheeccCC
Q 018632          343 VSNFQILNKH  352 (353)
Q Consensus       343 gi~afl~~~~  352 (353)
                      |+++|+++|+
T Consensus       260 g~~af~ekr~  269 (275)
T PLN02664        260 AVSAQIQKRK  269 (275)
T ss_pred             HHHHHhccCC
Confidence            9999999985

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=5.6e-51  Score=374.04  Aligned_cols=238  Identities=24%  Similarity=0.316  Sum_probs=216.4

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CC-CCCcccCcchhhHHHhhhcCChHHHHHHHHHH
Q 018632           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GS-GRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  115 (353)
Q Consensus        41 ~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~  115 (353)
                      +++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |. |++||+|+|++++...    .......+...+
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~----~~~~~~~~~~~~   77 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM----SPSEVQKFVNSL   77 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc----ChHHHHHHHHHH
Confidence            57899999999999999999999999999999999999987    76 5899999999987542    122334455666


Q ss_pred             HHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHHhcCC
Q 018632          116 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA  194 (353)
Q Consensus       116 ~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~ltG~  194 (353)
                      ..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|++||+
T Consensus        78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~  157 (251)
T PLN02600         78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR  157 (251)
T ss_pred             HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence            7788899999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             CCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHHHHHH
Q 018632          195 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS  274 (353)
Q Consensus       195 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  274 (353)
                      .++|+||+++||||+|+|++++.+.+.                                                     
T Consensus       158 ~~~a~eA~~~Glv~~vv~~~~~~~~a~-----------------------------------------------------  184 (251)
T PLN02600        158 RIGAREAASMGLVNYCVPAGEAYEKAL-----------------------------------------------------  184 (251)
T ss_pred             ccCHHHHHHcCCCcEeeChhHHHHHHH-----------------------------------------------------
Confidence            999999999999999999888764332                                                     


Q ss_pred             HHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 018632          275 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH  352 (353)
Q Consensus       275 l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~~~  352 (353)
                                    +++++|++.+|.+++.+|++++.....++.+.++.|...+..++.   ++|++||+++|+++|+
T Consensus       185 --------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~ekr~  245 (251)
T PLN02600        185 --------------ELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLK---TKDRLEGLAAFAEKRK  245 (251)
T ss_pred             --------------HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHhcCCC
Confidence                          458999999999999999999988888999999999999999887   9999999999999985

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.3e-51  Score=375.33  Aligned_cols=244  Identities=23%  Similarity=0.299  Sum_probs=220.8

Q ss_pred             ceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHH
Q 018632           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKD  110 (353)
Q Consensus        35 ~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~  110 (353)
                      .+.++++++|++||||||++ |++|.+|+.+|.++++.++.|++|++    |.|++||+|.|++++...   ........
T Consensus         3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~~   78 (257)
T PRK07658          3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSV---TEAEQATE   78 (257)
T ss_pred             eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcc---CchhhHHH
Confidence            67889999999999999985 99999999999999999999999988    889999999999987542   11122333


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHH
Q 018632          111 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  189 (353)
Q Consensus       111 ~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l  189 (353)
                      +......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|
T Consensus        79 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  158 (257)
T PRK07658         79 LAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEM  158 (257)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHH
Confidence            445566788899999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHH
Q 018632          190 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  269 (353)
Q Consensus       190 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (353)
                      +++|++++|+||+++||||+|+|++++.+.+.                                                
T Consensus       159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------  190 (257)
T PRK07658        159 MLTSEPITGAEALKWGLVNGVFPEETLLDDAK------------------------------------------------  190 (257)
T ss_pred             HHcCCCcCHHHHHHcCCcCeecChhHHHHHHH------------------------------------------------
Confidence            99999999999999999999999888764333                                                


Q ss_pred             HHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 018632          270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL  349 (353)
Q Consensus       270 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~  349 (353)
                                         +++++|++.+|.+++.+|++++.....++.++++.|...+...+.   ++|++||+++|++
T Consensus       191 -------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~egi~af~~  248 (257)
T PRK07658        191 -------------------KLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFT---SEDAKEGVQAFLE  248 (257)
T ss_pred             -------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHc
Confidence                               458999999999999999999988888999999999999999887   9999999999999


Q ss_pred             cCC
Q 018632          350 NKH  352 (353)
Q Consensus       350 ~~~  352 (353)
                      +|+
T Consensus       249 kr~  251 (257)
T PRK07658        249 KRK  251 (257)
T ss_pred             CCC
Confidence            975

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8e-51  Score=373.74  Aligned_cols=242  Identities=23%  Similarity=0.278  Sum_probs=214.3

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      .+.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...   ..... 
T Consensus         2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~~-   77 (254)
T PRK08252          2 SDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARG---ERPSI-   77 (254)
T ss_pred             CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcc---cchhh-
Confidence            4568899999999999999999999999999999999999999999887    899999999999987642   11111 


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                        ....+..+.  ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        78 --~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~  153 (254)
T PRK08252         78 --PGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAM  153 (254)
T ss_pred             --hHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHH
Confidence              111122222  1469999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|+++|++++|+||+++||||+|+|++++.+.+.                                              
T Consensus       154 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  187 (254)
T PRK08252        154 ELALTGDMLTAERAHELGLVNRLTEPGQALDAAL----------------------------------------------  187 (254)
T ss_pred             HHHHcCCccCHHHHHHcCCcceecCcchHHHHHH----------------------------------------------
Confidence            9999999999999999999999999888764333                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.||.+++.+|++++.....++.++++.|...+...+.   ++|++||+++|
T Consensus       188 ---------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~eg~~af  243 (254)
T PRK08252        188 ---------------------ELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFT---SADAKEGATAF  243 (254)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHH
Confidence                                 458999999999999999999988888899999999999988887   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      +++|+
T Consensus       244 ~~kr~  248 (254)
T PRK08252        244 AEKRA  248 (254)
T ss_pred             hcCCC
Confidence            99875

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-50  Score=374.19  Aligned_cols=243  Identities=26%  Similarity=0.359  Sum_probs=219.0

Q ss_pred             CceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           34 NQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        34 ~~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      +.+.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...   ..   .
T Consensus         7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~---~   80 (261)
T PRK08138          7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATA---GA---I   80 (261)
T ss_pred             CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhcc---ch---h
Confidence            4577787 78899999999999999999999999999999999999987    889999999999987542   11   1


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  160 (261)
T PRK08138         81 EMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAM  160 (261)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHH
Confidence            22334456778889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|+++|+.++|+||+++||||+|+|++++.+.+.                                              
T Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  194 (261)
T PRK08138        161 RMALTGCMVPAPEALAIGLVSEVVEDEQTLPRAL----------------------------------------------  194 (261)
T ss_pred             HHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999888764333                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.+|.+++.+|++++.....++.++++.|.+.+...+.   ++|+++|+++|
T Consensus       195 ---------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~i~af  250 (261)
T PRK08138        195 ---------------------ELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFD---SEDQKEGMDAF  250 (261)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence                                 348889999999999999999988888999999999999998887   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      +++|+
T Consensus       251 ~~kr~  255 (261)
T PRK08138        251 LEKRK  255 (261)
T ss_pred             hcCCC
Confidence            99985

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-50  Score=373.69  Aligned_cols=250  Identities=20%  Similarity=0.267  Sum_probs=221.3

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-Cccc----CCCCCcccCcchhhHHHhhhcC--Ch
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDP-NIGF----GSGRAFCAGGDIVSLYHFMNQG--KL  105 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~-~v~v----g~g~~F~aG~Dl~~~~~~~~~~--~~  105 (353)
                      ++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+ +|++    |.|++||+|+|++++.......  ..
T Consensus         3 ~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (266)
T PRK05981          3 FKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGG   82 (266)
T ss_pred             cceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccc
Confidence            456889999999999999999999999999999999999999876 4887    8899999999999875421100  01


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH
Q 018632          106 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  185 (353)
Q Consensus       106 ~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~  185 (353)
                      .....+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~  162 (266)
T PRK05981         83 DAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKA  162 (266)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHH
Confidence            11223444566788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcC
Q 018632          186 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  264 (353)
Q Consensus       186 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (353)
                       +++|+++|+.++|+||+++|||++|+|++++.+.+.                                           
T Consensus       163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~-------------------------------------------  199 (266)
T PRK05981        163 RAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAM-------------------------------------------  199 (266)
T ss_pred             HHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999888764333                                           


Q ss_pred             cCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018632          265 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS  344 (353)
Q Consensus       265 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi  344 (353)
                                              +++++|++.+|.+++.+|++++.....++.+.++.|...+...+.   ++|++||+
T Consensus       200 ------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~e~~  252 (266)
T PRK05981        200 ------------------------KLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGK---TEDFKEGV  252 (266)
T ss_pred             ------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhc---ChhHHHHH
Confidence                                    448899999999999999999988888999999999999888887   99999999


Q ss_pred             hheeccCC
Q 018632          345 NFQILNKH  352 (353)
Q Consensus       345 ~afl~~~~  352 (353)
                      .+|+++|+
T Consensus       253 ~af~~kr~  260 (266)
T PRK05981        253 GAFLQKRP  260 (266)
T ss_pred             HHHhcCCC
Confidence            99999986

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-50  Score=372.15  Aligned_cols=244  Identities=21%  Similarity=0.272  Sum_probs=221.0

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      +.+.++.+++|++||||||++.|++|.+|+.+|.++++.+ .|+++++    |.|++||+|+|++++...   ...+...
T Consensus         6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~   81 (260)
T PRK07659          6 ESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSS---NDESKFD   81 (260)
T ss_pred             ceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhc---cCchhHH
Confidence            4689999999999999999999999999999999999999 5888887    889999999999987542   1222334


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      .+...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus        82 ~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~  161 (260)
T PRK07659         82 GVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQ  161 (260)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHH
Confidence            5566677888899999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      |+++|+.++|+||+++||||+++ ++++.+.+.                                               
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~-----------------------------------------------  193 (260)
T PRK07659        162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAK-----------------------------------------------  193 (260)
T ss_pred             HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHH-----------------------------------------------
Confidence            99999999999999999999999 667654333                                               


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                                          +++++|++.||.+++.+|++++.....++.+.++.|.+.+...+.   ++|++||+.+|+
T Consensus       194 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~af~  250 (260)
T PRK07659        194 --------------------QKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQ---TADHKEGIRAFL  250 (260)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHhHHHHHHHHh
Confidence                                448999999999999999999988888999999999999988887   999999999999


Q ss_pred             ccCC
Q 018632          349 LNKH  352 (353)
Q Consensus       349 ~~~~  352 (353)
                      ++|+
T Consensus       251 ~kr~  254 (260)
T PRK07659        251 EKRL  254 (260)
T ss_pred             cCCC
Confidence            9985

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-50  Score=372.24  Aligned_cols=248  Identities=22%  Similarity=0.307  Sum_probs=217.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++....... ....
T Consensus         3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~   81 (262)
T PRK05995          3 YETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYS-DDEN   81 (262)
T ss_pred             CceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccC-chhh
Confidence            3468899999999999999999999999999999999999999999987    8999999999999875421111 1111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ......+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++ +++++|.. ++
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~  160 (262)
T PRK05995         82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAAR  160 (262)
T ss_pred             hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHH
Confidence            22234556788889999999999999999999999999999999999999999999999999887764 88999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|+++|++++|+||+++||||+|+|++++.+.+.                                              
T Consensus       161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  194 (262)
T PRK05995        161 RYFLTAERFDAAEALRLGLVHEVVPAEALDAKVD----------------------------------------------  194 (262)
T ss_pred             HHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999887765443                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHH-HHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-LVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~-l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                           +++++|++.||.+++.+|++++.....++.+. ++.|...+...+.   ++|++||+++
T Consensus       195 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e~~~a  250 (262)
T PRK05995        195 ---------------------ELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRA---TEEAREGVAA  250 (262)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence                                 34899999999999999999998878888888 8888888888777   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |+++|+
T Consensus       251 f~~kr~  256 (262)
T PRK05995        251 FLEKRK  256 (262)
T ss_pred             HhcCCC
Confidence            999985

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-50  Score=371.45  Aligned_cols=243  Identities=22%  Similarity=0.316  Sum_probs=216.9

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      |++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.....  +.  
T Consensus         1 m~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~--~~--   76 (249)
T PRK05870          1 MMDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPG--RP--   76 (249)
T ss_pred             CCccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccc--cc--
Confidence            45668899999999999999999999999999999999999999999987    99999999999998764211  11  


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      .......+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a  156 (249)
T PRK05870         77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA  156 (249)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence            122344455677788999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|++||++++|+||+++||||+++  +++.+.+.                                             
T Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~---------------------------------------------  189 (249)
T PRK05870        157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAAL---------------------------------------------  189 (249)
T ss_pred             HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHH---------------------------------------------
Confidence            9999999999999999999999999  45554333                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                                            +++++|++.+|.+++.+|++++.... .+++++++.|...+...+.   ++|++||++
T Consensus       190 ----------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~  244 (249)
T PRK05870        190 ----------------------ELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQ---SPEFAARLA  244 (249)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhc---ChhHHHHHH
Confidence                                  45899999999999999999998877 8899999999999988887   999999999


Q ss_pred             heecc
Q 018632          346 FQILN  350 (353)
Q Consensus       346 afl~~  350 (353)
                      +|+++
T Consensus       245 af~~~  249 (249)
T PRK05870        245 AAQRR  249 (249)
T ss_pred             HHhcC
Confidence            99974

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.1e-50  Score=370.85  Aligned_cols=243  Identities=25%  Similarity=0.300  Sum_probs=212.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      ++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++....   ....
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~---~~~~   79 (259)
T PRK06494          3 LPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGG---KRGW   79 (259)
T ss_pred             CceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcC---cchh
Confidence            4568899999999999999999999999999999999999999999987    887 7999999999875421   1111


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      .   ...+..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        80 ~---~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a  155 (259)
T PRK06494         80 P---ESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRA  155 (259)
T ss_pred             h---hHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHH
Confidence            1   1112223 334589999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|+++|+.++|+||+++||||+++|++++.+.+.                                             
T Consensus       156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  190 (259)
T PRK06494        156 MGMILTGRRVTAREGLELGFVNEVVPAGELLAAAE---------------------------------------------  190 (259)
T ss_pred             HHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999887765433                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHH--HHHHHHhhhcCCCCChhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVRE--YRMSLQGVSRLISGDFYEVS  344 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e--~~~~~~~~~~~~~~d~~egi  344 (353)
                                            +++++|++.||.+++.+|++++.....+++++++.|  ...+...+.   ++|++||+
T Consensus       191 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~d~~eg~  245 (259)
T PRK06494        191 ----------------------RWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRA---SQDYIEGP  245 (259)
T ss_pred             ----------------------HHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc---CccHHHHH
Confidence                                  448999999999999999999988888999999998  456667676   99999999


Q ss_pred             hheeccCC
Q 018632          345 NFQILNKH  352 (353)
Q Consensus       345 ~afl~~~~  352 (353)
                      ++|+++|+
T Consensus       246 ~af~~kr~  253 (259)
T PRK06494        246 KAFAEKRP  253 (259)
T ss_pred             HHHHccCC
Confidence            99999875

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-50  Score=370.08  Aligned_cols=241  Identities=22%  Similarity=0.281  Sum_probs=213.7

Q ss_pred             CceEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChH
Q 018632           34 NQVLVEGKAN---SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        34 ~~v~~~~~~~---v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      +.|.++++++   |++||||||++.|++|.+|+.+|.++++.++.|+++++    |.|++||+|.|++++.... . +. 
T Consensus         3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~-~-~~-   79 (251)
T PRK06023          3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAA-M-GG-   79 (251)
T ss_pred             ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcc-c-cc-
Confidence            3588888774   99999999999999999999999999999999999988    9999999999999875421 1 11 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                        ..+...+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|.. 
T Consensus        80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~  157 (251)
T PRK06023         80 --TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR  157 (251)
T ss_pred             --hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence              12333455678889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      +++++++|+.++|+||+++|||++|+|++++.+.+.                                            
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  193 (251)
T PRK06023        158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETL--------------------------------------------  193 (251)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999888765433                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                                             +++++|++.||.+++.+|++++... ..+.+.++.|...+...+.   ++|++||++
T Consensus       194 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~---~~~~~e~~~  246 (251)
T PRK06023        194 -----------------------KAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLK---SAEARAAFE  246 (251)
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                   4489999999999999999998663 4688999989888888887   999999999


Q ss_pred             heecc
Q 018632          346 FQILN  350 (353)
Q Consensus       346 afl~~  350 (353)
                      +|+++
T Consensus       247 af~e~  251 (251)
T PRK06023        247 AFMRR  251 (251)
T ss_pred             HHhcC
Confidence            99874

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.4e-50  Score=370.43  Aligned_cols=248  Identities=19%  Similarity=0.237  Sum_probs=215.9

Q ss_pred             CCceEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           33 CNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        33 ~~~v~~~~~-~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      ++.+.++++ ++|++|+||||++.|++|.+|+.+|.++++.++.|+++++    |.|++||+|+|++++...... +...
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~~   81 (262)
T PRK07468          3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTA-DRAT   81 (262)
T ss_pred             cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhccc-chhh
Confidence            345788875 6899999999999999999999999999999999999887    889999999999987542111 1111


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      .......+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|.. +
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a  160 (262)
T PRK07468         82 RIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANA  160 (262)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHH
Confidence            12233445668889999999999999999999999999999999999999999999999999999999855 558998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|+++|++++|+||+++|||++|+|++++++.+.                                             
T Consensus       161 ~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~---------------------------------------------  195 (262)
T PRK07468        161 RRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVE---------------------------------------------  195 (262)
T ss_pred             HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999877764433                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.+|.+++.+|++++......+.++++.|...+...+.   ++|++||+++
T Consensus       196 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~e~~~a  250 (262)
T PRK07468        196 ----------------------AEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWE---TEEAREGIAA  250 (262)
T ss_pred             ----------------------HHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence                                  348999999999999999999877666789999999999888887   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |+++|+
T Consensus       251 f~~kr~  256 (262)
T PRK07468        251 FFDKRA  256 (262)
T ss_pred             HHcCCC
Confidence            999985

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4e-50  Score=372.86  Aligned_cols=250  Identities=26%  Similarity=0.325  Sum_probs=218.3

Q ss_pred             CCceEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChH-
Q 018632           33 CNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLE-  106 (353)
Q Consensus        33 ~~~v~~~~~~-~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~-  106 (353)
                      ++.|.+++++ +|++||||||++.|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++.......... 
T Consensus         4 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   83 (272)
T PRK06210          4 YDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRD   83 (272)
T ss_pred             cceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccccc
Confidence            4568899998 999999999999999999999999999999999999987    8899999999999875421100000 


Q ss_pred             -HHHHH----HHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhc
Q 018632          107 -ECKDF----FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL  181 (353)
Q Consensus       107 -~~~~~----~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~  181 (353)
                       ....+    ...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~  163 (272)
T PRK06210         84 TDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRL  163 (272)
T ss_pred             ccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhh
Confidence             00111    1123456778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHH
Q 018632          182 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  260 (353)
Q Consensus       182 ~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (353)
                      +|.. +++|++||+.++|+||+++||||+|+|++++.+.+.                                       
T Consensus       164 ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------  204 (272)
T PRK06210        164 VGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTL---------------------------------------  204 (272)
T ss_pred             hCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------
Confidence            9999 999999999999999999999999999877764333                                       


Q ss_pred             HhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 018632          261 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD  339 (353)
Q Consensus       261 ~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~-~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d  339 (353)
                                                  +++++|+++ +|.++..+|++++.....++.++++.|...+...+.   ++|
T Consensus       205 ----------------------------~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~  253 (272)
T PRK06210        205 ----------------------------AYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQ---RPD  253 (272)
T ss_pred             ----------------------------HHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhc---Ccc
Confidence                                        348899985 999999999999988888999999999999888887   999


Q ss_pred             hhhhhhheeccCC
Q 018632          340 FYEVSNFQILNKH  352 (353)
Q Consensus       340 ~~egi~afl~~~~  352 (353)
                      ++||+++|+++|+
T Consensus       254 ~~egi~af~~kr~  266 (272)
T PRK06210        254 FIEGVASFLEKRP  266 (272)
T ss_pred             HHHHHHHHhccCC
Confidence            9999999999986

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.3e-50  Score=369.65  Aligned_cols=246  Identities=26%  Similarity=0.363  Sum_probs=223.2

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      +...+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++    |.|++||+|+|++++....   ... 
T Consensus         3 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~---~~~-   78 (259)
T PRK06688          3 MVTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAP---PKP-   78 (259)
T ss_pred             CCCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccC---cch-
Confidence            34468899999999999999999999999999999999999999999988    8889999999999886531   111 


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                       ..+...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +
T Consensus        79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a  157 (259)
T PRK06688         79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARA  157 (259)
T ss_pred             -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHH
Confidence             33455667788899999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      .+++++|++++|+||+++||||+|+|++++.+.+.                                             
T Consensus       158 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~---------------------------------------------  192 (259)
T PRK06688        158 AEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEAD---------------------------------------------  192 (259)
T ss_pred             HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999877764333                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.+|.+++.+|++++.....+++++++.|...+...+.   ++|+++|+++
T Consensus       193 ----------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~a  247 (259)
T PRK06688        193 ----------------------AQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLR---TPDFREGATA  247 (259)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  348899999999999999999998888999999999999999887   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |+++|+
T Consensus       248 f~~~~~  253 (259)
T PRK06688        248 FIEKRK  253 (259)
T ss_pred             HHcCCC
Confidence            999875

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6e-50  Score=372.13  Aligned_cols=253  Identities=20%  Similarity=0.260  Sum_probs=215.4

Q ss_pred             cCCCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcC-
Q 018632           30 DDLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQG-  103 (353)
Q Consensus        30 ~~~~~~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~-  103 (353)
                      ...++.|.++. +++|++|+||||+++|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++....... 
T Consensus         5 ~~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~   84 (276)
T PRK05864          5 RSTMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEG   84 (276)
T ss_pred             CCCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccccc
Confidence            44555688887 78999999999999999999999999999999999999987    8899999999999874311000 


Q ss_pred             --ChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCccccc-CccHHHHHhh
Q 018632          104 --KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSH  180 (353)
Q Consensus       104 --~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p-~~g~~~~l~r  180 (353)
                        .......+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~  164 (276)
T PRK05864         85 LTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPR  164 (276)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHh
Confidence              1111222344556778889999999999999999999999999999999999999999999999997 7888999999


Q ss_pred             cChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHH
Q 018632          181 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV  259 (353)
Q Consensus       181 ~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (353)
                      ++|.. |++|+++|++++|+||+++|||++|+|++++.+.+.                                      
T Consensus       165 ~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------  206 (276)
T PRK05864        165 AIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCY--------------------------------------  206 (276)
T ss_pred             hhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHH--------------------------------------
Confidence            99999 999999999999999999999999999888764433                                      


Q ss_pred             HHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcC-CHHHHHHHHHHHHH-HhhhcCCC
Q 018632          260 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMSL-QGVSRLIS  337 (353)
Q Consensus       260 ~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~-~~~~~l~~e~~~~~-~~~~~~~~  337 (353)
                                                   +++++|+..||.+++.+|++++..... +++++++.|..... ..+.   +
T Consensus       207 -----------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~---~  254 (276)
T PRK05864        207 -----------------------------AIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLL---T  254 (276)
T ss_pred             -----------------------------HHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc---C
Confidence                                         448999999999999999999877665 78888887765322 2344   9


Q ss_pred             CChhhhhhheeccCC
Q 018632          338 GDFYEVSNFQILNKH  352 (353)
Q Consensus       338 ~d~~egi~afl~~~~  352 (353)
                      +|++||+++|+++|+
T Consensus       255 ~d~~e~~~af~~kr~  269 (276)
T PRK05864        255 ANFEEAVAARAEKRP  269 (276)
T ss_pred             hhHHHHHHHHhccCC
Confidence            999999999999985

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=4.5e-50  Score=370.72  Aligned_cols=248  Identities=21%  Similarity=0.225  Sum_probs=213.2

Q ss_pred             CCceEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           33 CNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        33 ~~~v~~~~~-~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      ++.+.++++ ++|++||||||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.... ..+...
T Consensus         4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-~~~~~~   82 (265)
T PRK05674          4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSA-DLDYNT   82 (265)
T ss_pred             cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcc-cccchh
Confidence            456888885 7899999999999999999999999999999999999998    9999999999999875321 101111


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      .......+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ ++++++|.. +
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a  161 (265)
T PRK05674         83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAA  161 (265)
T ss_pred             hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHH
Confidence            11223345677888999999999999999999999999999999999999999999999999988766 488999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|++||+.++|+||+++|||++|+|++++.+.+.                                             
T Consensus       162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  196 (265)
T PRK05674        162 RRYALTAERFDGRRARELGLLAESYPAAELEAQVE---------------------------------------------  196 (265)
T ss_pred             HHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999887765433                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHH-HHHHHHhhhcCCCCChhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVRE-YRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e-~~~~~~~~~~~~~~d~~egi~  345 (353)
                                            +.+++|+++||.+++.+|++++.....++.++++.+ ...+...+.   ++|++||++
T Consensus       197 ----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~---s~d~~e~~~  251 (265)
T PRK05674        197 ----------------------AWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRV---SAEGQEGLR  251 (265)
T ss_pred             ----------------------HHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                  348999999999999999999998888888887753 455566665   999999999


Q ss_pred             heeccCC
Q 018632          346 FQILNKH  352 (353)
Q Consensus       346 afl~~~~  352 (353)
                      +|+++|+
T Consensus       252 af~~kr~  258 (265)
T PRK05674        252 AFLEKRT  258 (265)
T ss_pred             HHHccCC
Confidence            9999986

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=5.9e-50  Score=369.42  Aligned_cols=244  Identities=20%  Similarity=0.281  Sum_probs=214.1

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      ++.+.++++++|++||||||+ .|++|.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++...   .... 
T Consensus         2 ~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~---~~~~-   76 (261)
T PRK03580          2 SESLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEG---EAPD-   76 (261)
T ss_pred             CceEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhcc---Ccch-
Confidence            446899999999999999995 599999999999999999999999987    877 799999999987542   1111 


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                       ..+.......+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        77 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a  155 (261)
T PRK03580         77 -ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA  155 (261)
T ss_pred             -hhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence             11222223456788899999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++++++|+.++|+||+++|||++|+|++++.+.+.                                             
T Consensus       156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  190 (261)
T PRK03580        156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRAR---------------------------------------------  190 (261)
T ss_pred             HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888765443                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHH----HHHHhhhcCCCCChhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYR----MSLQGVSRLISGDFYE  342 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~----~~~~~~~~~~~~d~~e  342 (353)
                                            +++++|++.+|.+++.+|++++.....+++++++.|..    .+..++.   ++|++|
T Consensus       191 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~~d~~e  245 (261)
T PRK03580        191 ----------------------ELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLH---SEDALE  245 (261)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhc---CccHHH
Confidence                                  34899999999999999999998888899999998874    5556665   999999


Q ss_pred             hhhheeccCC
Q 018632          343 VSNFQILNKH  352 (353)
Q Consensus       343 gi~afl~~~~  352 (353)
                      |+++|+++|+
T Consensus       246 ~~~af~ekr~  255 (261)
T PRK03580        246 GPRAFAEKRD  255 (261)
T ss_pred             HHHHHhcCCC
Confidence            9999999985

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4e-50  Score=368.83  Aligned_cols=244  Identities=23%  Similarity=0.231  Sum_probs=212.4

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      |++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++    |.|++||+|+|++++....   . ..
T Consensus         1 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~---~-~~   76 (254)
T PRK08259          1 MSMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGR---G-NR   76 (254)
T ss_pred             CCceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhccc---c-hh
Confidence            45668999999999999999999999999999999999999999999988    8899999999999875421   1 11


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ....  ....+...+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|.+|++++|++++|.. +
T Consensus        77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  154 (254)
T PRK08259         77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA  154 (254)
T ss_pred             hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            1100  011112233479999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|+++|+.++|+||+++||||+|+|++++.+.+.                                             
T Consensus       155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  189 (254)
T PRK08259        155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAE---------------------------------------------  189 (254)
T ss_pred             HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999988765443                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.||.+++.+|++++.....+++++++.|...+...+    .+|++||+++
T Consensus       190 ----------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~----~~d~~egi~a  243 (254)
T PRK08259        190 ----------------------ELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVL----AAEALEGAAR  243 (254)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH----hhHHHHHHHH
Confidence                                  34899999999999999999998888899999999988776655    3999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |+++|.
T Consensus       244 f~~~~~  249 (254)
T PRK08259        244 FAAGAG  249 (254)
T ss_pred             HHhhhc
Confidence            999864

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=7.9e-50  Score=367.45  Aligned_cols=242  Identities=18%  Similarity=0.188  Sum_probs=206.5

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      +.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++...   .+.  .
T Consensus         2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~---~~~--~   76 (256)
T TIGR03210         2 EDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG---YDG--R   76 (256)
T ss_pred             CceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc---ccc--h
Confidence            458889999999999999999999999999999999999999999987    887 799999999987431   111  1


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|.. |+
T Consensus        77 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~  156 (256)
T TIGR03210        77 GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR  156 (256)
T ss_pred             hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence            11223345678889999999999999999999999999999999999999999999999998888899999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|+++|++++|+||+++||||+|+|++++.+.+.                                              
T Consensus       157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  190 (256)
T TIGR03210       157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQ----------------------------------------------  190 (256)
T ss_pred             HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999887765443                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTF-DECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~-~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                           +++++|++.||.+++.+|++++....... .+.+  |...+...+.   ++|++||+++
T Consensus       191 ---------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~--~~~~~~~~~~---~~d~~e~~~a  244 (256)
T TIGR03210       191 ---------------------KWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAGM--GMYALKLYYD---TAESREGVKA  244 (256)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhcccchHHHH--HHHHHHHHcc---ChhHHHHHHH
Confidence                                 44899999999999999999987644321 1122  3345555555   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |+++|+
T Consensus       245 f~~kr~  250 (256)
T TIGR03210       245 FQEKRK  250 (256)
T ss_pred             HhccCC
Confidence            999986

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=1.3e-49  Score=367.57  Aligned_cols=247  Identities=22%  Similarity=0.269  Sum_probs=216.0

Q ss_pred             CCCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCCh
Q 018632           31 DLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKL  105 (353)
Q Consensus        31 ~~~~~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~  105 (353)
                      ...+.|.++. +++|++||||||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.... ....
T Consensus         6 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~~   84 (265)
T PLN02888          6 VSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVF-KGDV   84 (265)
T ss_pred             CCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhc-cchh
Confidence            3344678885 78999999999999999999999999999999999999988    8899999999999865421 1111


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH
Q 018632          106 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  185 (353)
Q Consensus       106 ~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~  185 (353)
                         .   ....+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        85 ---~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  158 (265)
T PLN02888         85 ---K---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGAN  158 (265)
T ss_pred             ---h---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHH
Confidence               1   1123466678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcC
Q 018632          186 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  264 (353)
Q Consensus       186 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (353)
                       +++|+++|++++|+||+++||||+|+|++++.+.+.                                           
T Consensus       159 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------  195 (265)
T PLN02888        159 RAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAR-------------------------------------------  195 (265)
T ss_pred             HHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999887764333                                           


Q ss_pred             cCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018632          265 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS  344 (353)
Q Consensus       265 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi  344 (353)
                                              +++++|++.+|.+++.+|++++.....+++++++.|...+..++. +.++|++||+
T Consensus       196 ------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~-~~~~d~~e~~  250 (265)
T PLN02888        196 ------------------------EVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYN-GMTKEQFQKM  250 (265)
T ss_pred             ------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence                                    458999999999999999999988888999999999887776641 2389999999


Q ss_pred             hheeccCC
Q 018632          345 NFQILNKH  352 (353)
Q Consensus       345 ~afl~~~~  352 (353)
                      ++|+++|+
T Consensus       251 ~af~ekr~  258 (265)
T PLN02888        251 QEFIAGRS  258 (265)
T ss_pred             HHHHhcCC
Confidence            99999975

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-49  Score=366.39  Aligned_cols=245  Identities=21%  Similarity=0.314  Sum_probs=217.9

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      |++.|.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++    |.|++||+|+|++++....  .....
T Consensus         2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~--~~~~~   78 (257)
T PRK06495          2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVI--KGPGD   78 (257)
T ss_pred             CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhcc--CCchh
Confidence            4567889999999999999998 599999999999999999999999988    8899999999999875421  11122


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ...+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++   |+++++++++|.. +
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a  155 (257)
T PRK06495         79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT  155 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence            23344556678888999999999999999999999999999999999999999999999997   4567799999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|+++|+.++|+||+++|||++++|++++.+.+.                                             
T Consensus       156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~---------------------------------------------  190 (257)
T PRK06495        156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAM---------------------------------------------  190 (257)
T ss_pred             HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888765433                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.||.+++.+|++++.....++.++++.|...+...+.   ++|++||+++
T Consensus       191 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~egi~a  245 (257)
T PRK06495        191 ----------------------EIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAK---TEDAKEAQRA  245 (257)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence                                  448999999999999999999988888999999999999988887   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |+++|+
T Consensus       246 f~~kr~  251 (257)
T PRK06495        246 FLEKRP  251 (257)
T ss_pred             HhccCC
Confidence            999985

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-49  Score=367.05  Aligned_cols=248  Identities=23%  Similarity=0.234  Sum_probs=217.4

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      |++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.... ......
T Consensus         1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~~~   79 (262)
T PRK07509          1 MMDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSP-GNAVKL   79 (262)
T ss_pred             CCceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhccc-chhhhh
Confidence            56789999999999999999999999999999999999999999999988    9999999999999876421 111111


Q ss_pred             HHH----HHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcCh
Q 018632          108 CKD----FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  183 (353)
Q Consensus       108 ~~~----~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g  183 (353)
                      ...    ....+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g  159 (262)
T PRK07509         80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR  159 (262)
T ss_pred             HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence            111    1123445667788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHh
Q 018632          184 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  262 (353)
Q Consensus       184 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
                      .. +++|+++|++++|+||+++||||+++++  +.+.+.                                         
T Consensus       160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~a~-----------------------------------------  196 (262)
T PRK07509        160 KDVARELTYTARVFSAEEALELGLVTHVSDD--PLAAAL-----------------------------------------  196 (262)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHHHH-----------------------------------------
Confidence            99 9999999999999999999999999953  332222                                         


Q ss_pred             cCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018632          263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  342 (353)
Q Consensus       263 ~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  342 (353)
                                                +++++|++.+|.++..+|++++.....++.++++.|...+...+.   ++|++|
T Consensus       197 --------------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e  247 (262)
T PRK07509        197 --------------------------ALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLL---GKNQKI  247 (262)
T ss_pred             --------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHH
Confidence                                      458999999999999999999998888999999999999888887   999999


Q ss_pred             hhhheeccCC
Q 018632          343 VSNFQILNKH  352 (353)
Q Consensus       343 gi~afl~~~~  352 (353)
                      |+++|+++|+
T Consensus       248 ~~~af~ekr~  257 (262)
T PRK07509        248 AVKAQMKKRA  257 (262)
T ss_pred             HHHHHhcCCC
Confidence            9999999985

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-49  Score=367.71  Aligned_cols=246  Identities=21%  Similarity=0.282  Sum_probs=211.6

Q ss_pred             CCCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCCh
Q 018632           31 DLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKL  105 (353)
Q Consensus        31 ~~~~~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~  105 (353)
                      ..++.|.+++ +++|++||||||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|.|++++...  ..+.
T Consensus         8 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~--~~~~   85 (268)
T PRK07327          8 ADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEM--ADDF   85 (268)
T ss_pred             CCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhc--cCcH
Confidence            3456688887 57899999999999999999999999999999999999988    889999999999987642  1122


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH
Q 018632          106 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  185 (353)
Q Consensus       106 ~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~  185 (353)
                      +....+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  165 (268)
T PRK07327         86 EVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMA  165 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHH
Confidence            22334455566788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcC
Q 018632          186 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  264 (353)
Q Consensus       186 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (353)
                       +++|++||++++|+||+++|||++|+|++++.+.+.                                           
T Consensus       166 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------  202 (268)
T PRK07327        166 KAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKAL-------------------------------------------  202 (268)
T ss_pred             HHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999888765443                                           


Q ss_pred             cCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHhhhcCCCCChh
Q 018632          265 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF---QTFDECLVREYRMSLQGVSRLISGDFY  341 (353)
Q Consensus       265 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~---~~~~~~l~~e~~~~~~~~~~~~~~d~~  341 (353)
                                              +++++|++.+|.+++.+|++++....   ..+++.+..|.    ..+.   ++|++
T Consensus       203 ------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~---~~d~~  251 (268)
T PRK07327        203 ------------------------EVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFS---GPDVR  251 (268)
T ss_pred             ------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHcc---ChhHH
Confidence                                    44899999999999999999986532   24555555442    3444   99999


Q ss_pred             hhhhheeccCC
Q 018632          342 EVSNFQILNKH  352 (353)
Q Consensus       342 egi~afl~~~~  352 (353)
                      ||+.+|+++|+
T Consensus       252 eg~~af~ekr~  262 (268)
T PRK07327        252 EGLASLREKRA  262 (268)
T ss_pred             HHHHHHHhcCC
Confidence            99999999986

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=3.2e-50  Score=368.19  Aligned_cols=239  Identities=29%  Similarity=0.453  Sum_probs=224.6

Q ss_pred             EEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHHHH
Q 018632           38 VEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR  113 (353)
Q Consensus        38 ~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~  113 (353)
                      ++.+++|++|+||||++.|++|.+++.+|.++|+.++.|+++++    |.|++||+|.|++++...    +.+....+..
T Consensus         2 ~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~~   77 (245)
T PF00378_consen    2 YEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFFR   77 (245)
T ss_dssp             EEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHHH
T ss_pred             EEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccch
Confidence            68899999999999999999999999999999999999999887    888999999999998875    4556677888


Q ss_pred             HHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHHhc
Q 018632          114 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALT  192 (353)
Q Consensus       114 ~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~lt  192 (353)
                      .+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +.+++++
T Consensus        78 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~  157 (245)
T PF00378_consen   78 RFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT  157 (245)
T ss_dssp             HHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             CCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHHHH
Q 018632          193 GAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEII  272 (353)
Q Consensus       193 G~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  272 (353)
                      |++++|+||+++|||++|+|++++.+.+.                                                   
T Consensus       158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~---------------------------------------------------  186 (245)
T PF00378_consen  158 GEPISAEEALELGLVDEVVPDEELDEEAL---------------------------------------------------  186 (245)
T ss_dssp             TCEEEHHHHHHTTSSSEEESGGGHHHHHH---------------------------------------------------
T ss_pred             cccchhHHHHhhcceeEEcCchhhhHHHH---------------------------------------------------
Confidence            99999999999999999999998775444                                                   


Q ss_pred             HHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018632          273 DSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  350 (353)
Q Consensus       273 ~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~  350 (353)
                                      +++++|++.+|.+++.+|+.++......+.+.++.|...+...+.   ++|++||+++|+||
T Consensus       187 ----------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~f~eK  245 (245)
T PF00378_consen  187 ----------------ELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFK---SEDFQEGIAAFLEK  245 (245)
T ss_dssp             ----------------HHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHT---SHHHHHHHHHHHTT
T ss_pred             ----------------HHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHhCc
Confidence                            348999999999999999999999888999999999999999998   99999999999986

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=1.1e-49  Score=367.12  Aligned_cols=244  Identities=17%  Similarity=0.207  Sum_probs=209.1

Q ss_pred             ceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHHH
Q 018632           35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        35 ~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      .+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++.... .......
T Consensus         3 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~~~~~~   81 (259)
T TIGR01929         3 DIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYG-YIDDSGV   81 (259)
T ss_pred             eEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhcc-ccchhhH
Confidence            477888 89999999999999999999999999999999999999987    888 7999999998764310 0011111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      .  ...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        82 ~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~  159 (259)
T TIGR01929        82 H--RLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAR  159 (259)
T ss_pred             H--HHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHH
Confidence            1  11234577788999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|+++|++++|+||+++|||++|+|++++.+.+.                                              
T Consensus       160 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------  193 (259)
T TIGR01929       160 EIWFLCRQYDAEQALDMGLVNTVVPLADLEKETV----------------------------------------------  193 (259)
T ss_pred             HHHHhCCccCHHHHHHcCCcccccCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999887764433                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.||.+++.+|++++..... ....++.|...+...+.   ++|++||+++|
T Consensus       194 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~---~~d~~egi~af  248 (259)
T TIGR01929       194 ---------------------RWCREILQKSPMAIRMLKAALNADCDG-QAGLQELAGNATMLFYM---TEEGQEGRNAF  248 (259)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhc---CccHHHHHHHH
Confidence                                 448999999999999999999876443 45555566677777776   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      +++|+
T Consensus       249 ~~kr~  253 (259)
T TIGR01929       249 LEKRQ  253 (259)
T ss_pred             hccCC
Confidence            99985

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-49  Score=366.67  Aligned_cols=244  Identities=24%  Similarity=0.316  Sum_probs=212.8

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      ..+.+.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++...   ...+
T Consensus         6 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~---~~~~   82 (262)
T PRK06144          6 STDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAF---STAE   82 (262)
T ss_pred             CCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhc---cchh
Confidence            44568899999999999999999999999999999999999999999887    887 799999999987542   1112


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCC-cccccCccHHHHHhhcChHH
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL-IGFHPDAGASFYLSHLPGHL  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~-~G~~p~~g~~~~l~r~~g~~  185 (353)
                      ....+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~  162 (262)
T PRK06144         83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAA  162 (262)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHH
Confidence            22334455667888899999999999999999999999999999999999999999997 99999999999999999999


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcC
Q 018632          186 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  264 (353)
Q Consensus       186 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (353)
                       +++++++|++++|+||+++||||+|+|++++.+.+.                                           
T Consensus       163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------  199 (262)
T PRK06144        163 RVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARAD-------------------------------------------  199 (262)
T ss_pred             HHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999888765433                                           


Q ss_pred             cCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018632          265 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS  344 (353)
Q Consensus       265 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi  344 (353)
                                              +++++|++.||.+++.+|+.++......+    +.+...+...+.   ++|++||+
T Consensus       200 ------------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~l----~~~~~~~~~~~~---~~~~~e~~  248 (262)
T PRK06144        200 ------------------------ALAELLAAHAPLTLRATKEALRRLRREGL----PDGDDLIRMCYM---SEDFREGV  248 (262)
T ss_pred             ------------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCH----HHHHHHHHHHhc---ChHHHHHH
Confidence                                    45899999999999999999987655544    334456666666   99999999


Q ss_pred             hheeccCC
Q 018632          345 NFQILNKH  352 (353)
Q Consensus       345 ~afl~~~~  352 (353)
                      ++|+++|+
T Consensus       249 ~af~~kr~  256 (262)
T PRK06144        249 EAFLEKRP  256 (262)
T ss_pred             HHHhcCCC
Confidence            99999985

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=1.4e-49  Score=369.36  Aligned_cols=253  Identities=19%  Similarity=0.210  Sum_probs=220.0

Q ss_pred             CCCcCCCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC--CCcccCcchhhHHHh
Q 018632           27 SVTDDLCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG--RAFCAGGDIVSLYHF   99 (353)
Q Consensus        27 ~~~~~~~~~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g--~~F~aG~Dl~~~~~~   99 (353)
                      ++.|.....|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|++|++    |.|  ++||+|.|++++...
T Consensus         4 ~~~~~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~   82 (278)
T PLN03214          4 PSPPGATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAP   82 (278)
T ss_pred             CCCCCCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcc
Confidence            34455556789998 6899999999985 699999999999999999999999987    766  799999999987531


Q ss_pred             hhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCccc-ccCccHHHHH
Q 018632          100 MNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF-HPDAGASFYL  178 (353)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~-~p~~g~~~~l  178 (353)
                        ..+.+....+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|+ +|++|++++|
T Consensus        83 --~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l  160 (278)
T PLN03214         83 --KTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFM  160 (278)
T ss_pred             --ccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHH
Confidence              1112222334444456778899999999999999999999999999999999999999999999999 5999999999


Q ss_pred             hhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHH
Q 018632          179 SHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  257 (353)
Q Consensus       179 ~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (353)
                      ++++|.. +++|++||+.++|+||+++||||+|+|++++.+.+.                                    
T Consensus       161 ~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------  204 (278)
T PLN03214        161 GRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAA------------------------------------  204 (278)
T ss_pred             HHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHH------------------------------------
Confidence            9999999 999999999999999999999999999887764333                                    


Q ss_pred             HHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCC
Q 018632          258 IVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLIS  337 (353)
Q Consensus       258 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~  337 (353)
                                                     +++++|++.+|.+++.+|++++......++++++.|...+...+.   +
T Consensus       205 -------------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s  250 (278)
T PLN03214        205 -------------------------------SAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLS---E  250 (278)
T ss_pred             -------------------------------HHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC---C
Confidence                                           458999999999999999999988888899999999988888776   9


Q ss_pred             CChhhhhhheeccCC
Q 018632          338 GDFYEVSNFQILNKH  352 (353)
Q Consensus       338 ~d~~egi~afl~~~~  352 (353)
                      +|++||+++|+++.+
T Consensus       251 ~d~~egi~aflek~~  265 (278)
T PLN03214        251 PSIIKALGGVMERLS  265 (278)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999854

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-49  Score=362.38  Aligned_cols=238  Identities=20%  Similarity=0.194  Sum_probs=210.0

Q ss_pred             EEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHHHH
Q 018632           38 VEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR  113 (353)
Q Consensus        38 ~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~  113 (353)
                      .+++++|++||||||+ .|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...   ........+..
T Consensus         6 ~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~---~~~~~~~~~~~   81 (249)
T PRK07938          6 TTPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT---PGFTALIDANR   81 (249)
T ss_pred             cccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhc---cchhHHHHHHH
Confidence            3467899999999997 599999999999999999999999988    999999999999987531   11222223334


Q ss_pred             HHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHHhc
Q 018632          114 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALT  192 (353)
Q Consensus       114 ~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~lt  192 (353)
                      .+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++   |++++|++++|.. +++|+++
T Consensus        82 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~lt  158 (249)
T PRK07938         82 GCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFT  158 (249)
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHh
Confidence            45667888999999999999999999999999999999999999999999999986   4567899999999 9999999


Q ss_pred             CCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHHHH
Q 018632          193 GAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEII  272 (353)
Q Consensus       193 G~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  272 (353)
                      |+.++|+||+++|||++|+|++++++.+.                                                   
T Consensus       159 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------------  187 (249)
T PRK07938        159 AATITAAELHHFGSVEEVVPRDQLDEAAL---------------------------------------------------  187 (249)
T ss_pred             CCcCCHHHHHHCCCccEEeCHHHHHHHHH---------------------------------------------------
Confidence            99999999999999999999888765443                                                   


Q ss_pred             HHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 018632          273 DSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH  352 (353)
Q Consensus       273 ~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~~~  352 (353)
                                      +++++|++.+|.+++.+|++++.....++++.++.|...+...+.   ++|++||+++|++||+
T Consensus       188 ----------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af~ekr~  248 (249)
T PRK07938        188 ----------------EVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNL---AGVSDEHRDAFVEKRK  248 (249)
T ss_pred             ----------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---CccHHHHHHHHHhcCC
Confidence                            448999999999999999999988888899999999988888776   9999999999999986

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=4.4e-49  Score=362.96  Aligned_cols=246  Identities=28%  Similarity=0.394  Sum_probs=219.1

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      .+..+.++..++|++||||||+++|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++..   ..+...
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~---~~~~~~   79 (257)
T COG1024           3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS---PEDGNA   79 (257)
T ss_pred             CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc---ccchhH
Confidence            34568888989999999999999999999999999999999999999998    99999999999999875   111222


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ...+....+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. +
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a  159 (257)
T COG1024          80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA  159 (257)
T ss_pred             HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence            225667777899999999999999999999999999999999999999999999999999999889999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      .+|++||+.++++||+++|||++++++ +++.+.+.                                            
T Consensus       160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~--------------------------------------------  195 (257)
T COG1024         160 KELLLTGEPISAAEALELGLVDEVVPDAEELLERAL--------------------------------------------  195 (257)
T ss_pred             HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999986 56664443                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                                             +++++|+. +|.++..+|+.++.....++++.+..|...+...+.   ++|++||++
T Consensus       196 -----------------------~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~d~~eg~~  248 (257)
T COG1024         196 -----------------------ELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFS---SEDFREGVR  248 (257)
T ss_pred             -----------------------HHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhc---ChhHHHHHH
Confidence                                   33666666 999999999999988777799999999999988666   999999999


Q ss_pred             heeccCC
Q 018632          346 FQILNKH  352 (353)
Q Consensus       346 afl~~~~  352 (353)
                      +|++ |+
T Consensus       249 a~~~-r~  254 (257)
T COG1024         249 AFLE-RK  254 (257)
T ss_pred             HHHc-cC
Confidence            9998 54

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.6e-49  Score=369.62  Aligned_cols=248  Identities=22%  Similarity=0.259  Sum_probs=211.3

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcC------
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQG------  103 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~------  103 (353)
                      +.|.++++++|++|+||||++.|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.......      
T Consensus         4 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (296)
T PRK08260          4 ETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPV   83 (296)
T ss_pred             ceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccccccc
Confidence            458899999999999999999999999999999999999999999988    8899999999999875311000      


Q ss_pred             -------ChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHH
Q 018632          104 -------KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF  176 (353)
Q Consensus       104 -------~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~  176 (353)
                             .......+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~  163 (296)
T PRK08260         84 EADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSW  163 (296)
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhh
Confidence                   0111122333445678889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHH
Q 018632          177 YLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR  255 (353)
Q Consensus       177 ~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (353)
                      +|++++|.. +++|+++|++++|+||+++|||++|+|++++...+.                                  
T Consensus       164 ~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------  209 (296)
T PRK08260        164 FLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAAR----------------------------------  209 (296)
T ss_pred             hHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHH----------------------------------
Confidence            999999999 999999999999999999999999999887754333                                  


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CchHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHhh
Q 018632          256 IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRF--QTFDECLVREYRMSLQGV  332 (353)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~-~p~a~~~~k~~l~~~~~--~~~~~~l~~e~~~~~~~~  332 (353)
                                                       +++++|+++ +|.+++.+|++++....  ...... ..|...+..++
T Consensus       210 ---------------------------------~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~~~-~~e~~~~~~~~  255 (296)
T PRK08260        210 ---------------------------------ALAREIADNTSPVSVALTRQMMWRMAGADHPMEAH-RVDSRAIYSRG  255 (296)
T ss_pred             ---------------------------------HHHHHHHhcCChHHHHHHHHHHHhcccCCCcHHHH-HHHHHHHHHHc
Confidence                                             448899986 99999999999987642  234433 55777777777


Q ss_pred             hcCCCCChhhhhhheeccCC
Q 018632          333 SRLISGDFYEVSNFQILNKH  352 (353)
Q Consensus       333 ~~~~~~d~~egi~afl~~~~  352 (353)
                      .   ++|++||+++|+++|+
T Consensus       256 ~---~~d~~egi~af~~kr~  272 (296)
T PRK08260        256 R---SGDGKEGVSSFLEKRP  272 (296)
T ss_pred             c---ChhHHHHHHHHhcCCC
Confidence            6   9999999999999985

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=4.9e-49  Score=363.05  Aligned_cols=244  Identities=17%  Similarity=0.198  Sum_probs=214.3

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CC--CCCcccCcchhhHHHhhhcCChH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GS--GRAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~--g~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      ++.+.++.+++|++||||||++.|++|.+|+.+|.++++.++.|+ +++    |.  |++||+|+|++++...  ..+  
T Consensus         3 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~--~~~--   77 (261)
T PRK11423          3 MQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSG--GRD--   77 (261)
T ss_pred             ccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhc--ccc--
Confidence            456889999999999999999999999999999999999999887 887    64  3899999999987532  111  


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                       ...+...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. 
T Consensus        78 -~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~  156 (261)
T PRK11423         78 -PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI  156 (261)
T ss_pred             -HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence             123344566788889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      +++|+++|++++|+||+++||||+|+|++++++.+.                                            
T Consensus       157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  192 (261)
T PRK11423        157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTL--------------------------------------------  192 (261)
T ss_pred             HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999887764333                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc-CCH-HHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTF-DECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~-~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                                             +++++|++.+|.+++.+|++++.... ..+ ...++.|...+..++.   ++|++||
T Consensus       193 -----------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~d~~eg  246 (261)
T PRK11423        193 -----------------------QMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYD---SEDYQEG  246 (261)
T ss_pred             -----------------------HHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhC---ChhHHHH
Confidence                                   45899999999999999999986543 344 6888888888888887   9999999


Q ss_pred             hhheeccCC
Q 018632          344 SNFQILNKH  352 (353)
Q Consensus       344 i~afl~~~~  352 (353)
                      +.+|+++|+
T Consensus       247 ~~af~~kr~  255 (261)
T PRK11423        247 MNAFLEKRK  255 (261)
T ss_pred             HHHHhccCC
Confidence            999999985

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=6.4e-49  Score=364.57  Aligned_cols=246  Identities=18%  Similarity=0.219  Sum_probs=210.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      +..+.++.+++|++||||||+++|++|.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++.... ....+.
T Consensus        12 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~~~~~   90 (273)
T PRK07396         12 YEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGG-YVDDDG   90 (273)
T ss_pred             CcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccc-ccchhh
Confidence            3468899999999999999999999999999999999999999999987    888 6999999999864210 001111


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ...+  ....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        91 ~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a  168 (273)
T PRK07396         91 VPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA  168 (273)
T ss_pred             hhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence            1111  133566788899999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|+++|+.++|+||+++||||+|+|++++++.+.                                             
T Consensus       169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  203 (273)
T PRK07396        169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETV---------------------------------------------  203 (273)
T ss_pred             HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999887765443                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.+|.+++.+|++++.... .++...+.|...+...+.   ++|++||+.+
T Consensus       204 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~---~~d~~egi~a  257 (273)
T PRK07396        204 ----------------------RWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYM---TEEAQEGRNA  257 (273)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhc---ChhHHHHHHH
Confidence                                  34899999999999999999987644 455555567777777776   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |+++|+
T Consensus       258 f~~kr~  263 (273)
T PRK07396        258 FNEKRQ  263 (273)
T ss_pred             HhCCCC
Confidence            999985

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-48  Score=360.38  Aligned_cols=247  Identities=22%  Similarity=0.207  Sum_probs=217.7

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ...+.++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++    |.|++||+|+|++++.... ....+..
T Consensus         5 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~~~~~   83 (260)
T PRK07827          5 DTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGG-GDPYDAA   83 (260)
T ss_pred             CcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcc-cCchhHH
Confidence            4468889999999999999999999999999999999999999999888    8899999999999875421 1112222


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF  188 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~  188 (353)
                      ..+...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..+++
T Consensus        84 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~  163 (260)
T PRK07827         84 VARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAAR  163 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHH
Confidence            33455667788899999999999999999999999999999999999999999999999999999999999987645999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      ++++|++++|+||+++|||+++++  ++++.+.                                               
T Consensus       164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~-----------------------------------------------  194 (260)
T PRK07827        164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVA-----------------------------------------------  194 (260)
T ss_pred             HHHhCCccCHHHHHHcCCcccchH--HHHHHHH-----------------------------------------------
Confidence            999999999999999999999974  3543333                                               


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                                          +++++|++.+|.+++.+|++++......+++.++.|...+..++.   ++|+++|+++|+
T Consensus       195 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~af~  251 (260)
T PRK07827        195 --------------------ALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFV---SDEAREGMTAFL  251 (260)
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHh
Confidence                                448999999999999999999998888999999999998888887   999999999999


Q ss_pred             ccCC
Q 018632          349 LNKH  352 (353)
Q Consensus       349 ~~~~  352 (353)
                      ++|+
T Consensus       252 ~kr~  255 (260)
T PRK07827        252 QKRP  255 (260)
T ss_pred             cCCC
Confidence            9985

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-48  Score=357.49  Aligned_cols=237  Identities=24%  Similarity=0.309  Sum_probs=211.3

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDF  111 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  111 (353)
                      |.++.+++|++||||||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|.|++++...    .   ...+
T Consensus         2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~----~---~~~~   74 (248)
T PRK06072          2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD----F---AIDL   74 (248)
T ss_pred             eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh----h---HHHH
Confidence            5678899999999999999999999999999999999999999887    889999999999987531    1   1223


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHHh
Q 018632          112 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLAL  191 (353)
Q Consensus       112 ~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l  191 (353)
                      ...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..++++++
T Consensus        75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll  154 (248)
T PRK06072         75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV  154 (248)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence            34456778889999999999999999999999999999999999999999999999999999999999999966999999


Q ss_pred             cCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHHH
Q 018632          192 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI  271 (353)
Q Consensus       192 tG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  271 (353)
                      +|++++|+||+++||||.+   +++.+.+                                                   
T Consensus       155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a---------------------------------------------------  180 (248)
T PRK06072        155 LGGEFTAEEAERWGLLKIS---EDPLSDA---------------------------------------------------  180 (248)
T ss_pred             hCCccCHHHHHHCCCcccc---chHHHHH---------------------------------------------------
Confidence            9999999999999999953   2332211                                                   


Q ss_pred             HHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccC
Q 018632          272 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK  351 (353)
Q Consensus       272 ~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~~  351 (353)
                                      .+++++|++.||.+++.+|++++.....++++.++.|...+..++.   ++|++||+++|+++|
T Consensus       181 ----------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af~~kr  241 (248)
T PRK06072        181 ----------------EEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGK---TEDFKEGISSFKEKR  241 (248)
T ss_pred             ----------------HHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhC---ChhHHHHHHHHhcCC
Confidence                            2458999999999999999999988888999999999999988887   999999999999998


Q ss_pred             C
Q 018632          352 H  352 (353)
Q Consensus       352 ~  352 (353)
                      +
T Consensus       242 ~  242 (248)
T PRK06072        242 E  242 (248)
T ss_pred             C
Confidence            6

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=1.2e-48  Score=358.32  Aligned_cols=237  Identities=21%  Similarity=0.258  Sum_probs=206.1

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDF  111 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  111 (353)
                      |.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++++    |.|++||+|.|+.++..       .....+
T Consensus         3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~-------~~~~~~   74 (251)
T TIGR03189         3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP-------DQCAAM   74 (251)
T ss_pred             EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc-------hhHHHH
Confidence            678889999999999997 599999999999999999999999987    99999999999987531       111223


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHH
Q 018632          112 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  190 (353)
Q Consensus       112 ~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~  190 (353)
                      ...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++++|++++|.. +++|+
T Consensus        75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~  153 (251)
T TIGR03189        75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLL  153 (251)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHH
Confidence            4455678888999999999999999999999999999999999999999999999999874 577899999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHH
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  270 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (353)
                      +||++++|+||+++|||++|+|+.+ +...+                                                 
T Consensus       154 ltg~~~~a~eA~~~Glv~~v~~~~~-~~a~~-------------------------------------------------  183 (251)
T TIGR03189       154 YSGRSIDGAEGARIGLANAVAEDPE-NAALA-------------------------------------------------  183 (251)
T ss_pred             HcCCCCCHHHHHHCCCcceecCcHH-HHHHH-------------------------------------------------
Confidence            9999999999999999999997533 11111                                                 


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHH-HHHHHHHHhhhcCCCCChhhhhhheec
Q 018632          271 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLV-REYRMSLQGVSRLISGDFYEVSNFQIL  349 (353)
Q Consensus       271 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~-~e~~~~~~~~~~~~~~d~~egi~afl~  349 (353)
                                        .++++|+++||.+++.+|++++.....++++++. .|...+...+.   ++|++||+++|++
T Consensus       184 ------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~af~e  242 (251)
T TIGR03189       184 ------------------WFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMA---THDAVEGLNAFLE  242 (251)
T ss_pred             ------------------HHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhC---CHhHHHHHHHHHh
Confidence                              1268999999999999999999887888887764 67777777776   9999999999999


Q ss_pred             cCC
Q 018632          350 NKH  352 (353)
Q Consensus       350 ~~~  352 (353)
                      +|+
T Consensus       243 kr~  245 (251)
T TIGR03189       243 KRP  245 (251)
T ss_pred             cCC
Confidence            986

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=4.6e-48  Score=354.33  Aligned_cols=239  Identities=19%  Similarity=0.209  Sum_probs=215.9

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      |+..+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++    |.|++||+|.|+.++....   ... 
T Consensus         3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~~-   78 (249)
T PRK07110          3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQ---TGK-   78 (249)
T ss_pred             CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhcc---chh-
Confidence            56678899999999999999999999999999999999999999999987    9999999999999875421   111 


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                       ..+..  ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        79 -~~~~~--~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a  155 (249)
T PRK07110         79 -GTFTE--ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG  155 (249)
T ss_pred             -hhHhh--HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence             11221  5678889999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      +++++||++++++||+++|||++|+|++++.+.+.                                             
T Consensus       156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  190 (249)
T PRK07110        156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKAL---------------------------------------------  190 (249)
T ss_pred             HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999887764333                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +.+++|++.||.+++.+|+.++......+.++++.|...+...+.   ++|++||+++
T Consensus       191 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~~  245 (249)
T PRK07110        191 ----------------------ELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFH---QPEVKRRIES  245 (249)
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC---CHhHHHHHHH
Confidence                                  448999999999999999999999889999999999999999887   9999999987


Q ss_pred             e
Q 018632          347 Q  347 (353)
Q Consensus       347 f  347 (353)
                      .
T Consensus       246 ~  246 (249)
T PRK07110        246 L  246 (249)
T ss_pred             h
Confidence            5

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.6e-48  Score=352.99  Aligned_cols=231  Identities=22%  Similarity=0.301  Sum_probs=206.0

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDF  111 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  111 (353)
                      +.++++++|++||||||+++|++|.+|+.+|.++++.++.+ ++++    |.|++||+|+|+++...         ...+
T Consensus         2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~   71 (243)
T PRK07854          2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF   71 (243)
T ss_pred             ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence            56788999999999999999999999999999999999865 7887    99999999999985211         1223


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHH
Q 018632          112 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  190 (353)
Q Consensus       112 ~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~  190 (353)
                      ...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|+
T Consensus        72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~  151 (243)
T PRK07854         72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML  151 (243)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence            44556778889999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHH
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  270 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (353)
                      +||++++|+||+++|||++|++   ++ .+.                                                 
T Consensus       152 ltg~~~~a~eA~~~Glv~~v~~---~~-~a~-------------------------------------------------  178 (243)
T PRK07854        152 LGAEKLTAEQALATGMANRIGT---LA-DAQ-------------------------------------------------  178 (243)
T ss_pred             HcCCCcCHHHHHHCCCcccccC---HH-HHH-------------------------------------------------
Confidence            9999999999999999999964   22 111                                                 


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018632          271 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  350 (353)
Q Consensus       271 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~  350 (353)
                                        +++++|++.||.++..+|++++..  .+++++++.|...+...+.   ++|++||+++|+++
T Consensus       179 ------------------~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~~k  235 (243)
T PRK07854        179 ------------------AWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWA---SQDAIEAQVARIEK  235 (243)
T ss_pred             ------------------HHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhc---CchHHHHHHHHhCC
Confidence                              458999999999999999999875  6799999999998888887   99999999999999


Q ss_pred             CC
Q 018632          351 KH  352 (353)
Q Consensus       351 ~~  352 (353)
                      |+
T Consensus       236 r~  237 (243)
T PRK07854        236 RP  237 (243)
T ss_pred             CC
Confidence            85

>PLN02921 naphthoate synthase

Probab=100.00  E-value=5.1e-48  Score=365.08  Aligned_cols=247  Identities=17%  Similarity=0.213  Sum_probs=208.4

Q ss_pred             CCCceEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCC
Q 018632           32 LCNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGK  104 (353)
Q Consensus        32 ~~~~v~~~~--~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~  104 (353)
                      .++.|.++.  +++|++|+||||++.|+||.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++... ....
T Consensus        63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~-~~~~  141 (327)
T PLN02921         63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKD-GYVG  141 (327)
T ss_pred             CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcc-cccc
Confidence            455688887  58999999999999999999999999999999999999887    888 799999999976431 0011


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       105 ~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      .+....+  ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus       142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~  219 (327)
T PLN02921        142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQ  219 (327)
T ss_pred             hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence            1111111  12356778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . +++|+++|+.++|+||+++|||++|+|++++++.+.                                          
T Consensus       220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~------------------------------------------  257 (327)
T PLN02921        220 KKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETV------------------------------------------  257 (327)
T ss_pred             HHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999888765443                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                                               +++++|++++|.+++.+|++++..... .....+.|...+..++.   ++|++||
T Consensus       258 -------------------------~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~---s~d~~eg  308 (327)
T PLN02921        258 -------------------------KWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYG---SEEGNEG  308 (327)
T ss_pred             -------------------------HHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhc---CHHHHHH
Confidence                                     348999999999999999999876543 33333334466666665   9999999


Q ss_pred             hhheeccCC
Q 018632          344 SNFQILNKH  352 (353)
Q Consensus       344 i~afl~~~~  352 (353)
                      +++|+++|+
T Consensus       309 i~Af~ekr~  317 (327)
T PLN02921        309 RTAYLEGRA  317 (327)
T ss_pred             HHHHhccCC
Confidence            999999985

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-47  Score=351.27  Aligned_cols=228  Identities=23%  Similarity=0.264  Sum_probs=205.5

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.+.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...    ..+..
T Consensus         3 ~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~----~~~~~   78 (258)
T PRK06190          3 EPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGD----GSAYG   78 (258)
T ss_pred             CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcc----cchhh
Confidence            4568999999999999999999999999999999999999999999987    889999999999987542    11111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      .  ...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        79 ~--~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  156 (258)
T PRK06190         79 A--QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR  156 (258)
T ss_pred             H--HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence            1  23355678889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||++++|+||+++||||+++|++++.+.+.                                              
T Consensus       157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  190 (258)
T PRK06190        157 RMSLTGDFLDAADALRAGLVTEVVPHDELLPRAR----------------------------------------------  190 (258)
T ss_pred             HHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999888765433                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhh
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS  333 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~  333 (353)
                                           +++++|+++||.+++.+|++++.....++.++++.|...+...+.
T Consensus       191 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~  235 (258)
T PRK06190        191 ---------------------RLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNR  235 (258)
T ss_pred             ---------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHc
Confidence                                 348999999999999999999998888999999999999988886

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=1.6e-47  Score=359.56  Aligned_cols=249  Identities=15%  Similarity=0.169  Sum_probs=208.5

Q ss_pred             CCceEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-------CCcccCcchhhHHHh
Q 018632           33 CNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-------RAFCAGGDIVSLYHF   99 (353)
Q Consensus        33 ~~~v~~~~--~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-------~~F~aG~Dl~~~~~~   99 (353)
                      +..|.+++  +++|++||||||+++|++|.+|+.+|.++++.++.|++|++    |.|       ++||+|+|++++...
T Consensus        22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~  101 (302)
T PRK08321         22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD  101 (302)
T ss_pred             ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence            33588888  89999999999999999999999999999999999999987    766       599999999876321


Q ss_pred             h---hcCCh-H--HHHHHH-HHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEe-CceEEeccCCCcccccC
Q 018632          100 M---NQGKL-E--ECKDFF-RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPD  171 (353)
Q Consensus       100 ~---~~~~~-~--~~~~~~-~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~G~~p~  171 (353)
                      .   ..... .  ...... .....+...+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~  181 (302)
T PRK08321        102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG  181 (302)
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence            0   00000 0  000111 112345667889999999999999999999999999999999 69999999999999999


Q ss_pred             ccHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChh
Q 018632          172 AGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKN  250 (353)
Q Consensus       172 ~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (353)
                      +|++++|++++|.. +++|++||+.++|+||+++|||++++|++++++.+.                             
T Consensus       182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~-----------------------------  232 (302)
T PRK08321        182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEAL-----------------------------  232 (302)
T ss_pred             chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHH-----------------------------
Confidence            99999999999999 999999999999999999999999999888765443                             


Q ss_pred             hHHHHHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 018632          251 SVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQ  330 (353)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~  330 (353)
                                                            +++++|++.+|.+++.+|++++..... +.+....|.+.+..
T Consensus       233 --------------------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~  273 (302)
T PRK08321        233 --------------------------------------EWAREINGKSPTAMRMLKYAFNLTDDG-LVGQQLFAGEATRL  273 (302)
T ss_pred             --------------------------------------HHHHHHHhCCHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHH
Confidence                                                  448999999999999999999876553 34445567777777


Q ss_pred             hhhcCCCCChhhhhhheeccCC
Q 018632          331 GVSRLISGDFYEVSNFQILNKH  352 (353)
Q Consensus       331 ~~~~~~~~d~~egi~afl~~~~  352 (353)
                      .+.   ++|+++|+.+|+++|+
T Consensus       274 ~~~---~~d~~egi~af~ekr~  292 (302)
T PRK08321        274 AYM---TDEAQEGRDAFLEKRD  292 (302)
T ss_pred             Hhc---CHHHHHHHHHHhccCC
Confidence            776   9999999999999986

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.6e-47  Score=350.51  Aligned_cols=242  Identities=16%  Similarity=0.168  Sum_probs=207.8

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.  ++++    |.|++||+|+|++++.....  .....
T Consensus         3 ~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~--~vr~vVl~g~g~~FsaG~Dl~~~~~~~~--~~~~~   78 (255)
T PRK07112          3 YQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCEH--AATIVVLEGLPEVFCFGADFSAIAEKPD--AGRAD   78 (255)
T ss_pred             CceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhc--CceEEEEEcCCCCcccCcCHHHHhhccc--cchhh
Confidence            3468899999999999999999999999999999999999984  4555    88999999999998754211  11111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +.+|++++|.. ++
T Consensus        79 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~  157 (255)
T PRK07112         79 LIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAH  157 (255)
T ss_pred             hhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHH
Confidence            11233445678889999999999999999999999999999999999999999999999999865 45799999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|+++|++++|+||+++||||+|+|+++.  ...                                              
T Consensus       158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~----------------------------------------------  189 (255)
T PRK07112        158 YMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLR----------------------------------------------  189 (255)
T ss_pred             HHHHhCCcccHHHHHHcCCCceecCcHHH--HHH----------------------------------------------
Confidence            99999999999999999999999986542  111                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.+|.+++.+|++++.. ...+.++++.|.......+.   ++|++||+.+|
T Consensus       190 ---------------------~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~---~~~~~eg~~af  244 (255)
T PRK07112        190 ---------------------KHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFA---DPENLRKIARY  244 (255)
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHc---ChHHHHHHHHH
Confidence                                 348999999999999999999865 55789999999998888887   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      +++|+
T Consensus       245 ~~kr~  249 (255)
T PRK07112        245 VETGK  249 (255)
T ss_pred             HcCCC
Confidence            99985

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.2e-48  Score=361.56  Aligned_cols=245  Identities=19%  Similarity=0.202  Sum_probs=205.9

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhh-HHHh---h-hcCC
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVS-LYHF---M-NQGK  104 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~-~~~~---~-~~~~  104 (353)
                      +.+.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|+++ +...   . ..+.
T Consensus         5 ~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~   84 (298)
T PRK12478          5 QTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGR   84 (298)
T ss_pred             eEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccc
Confidence            458889999999999999999999999999999999999999999998    99999999999986 2110   0 0000


Q ss_pred             hHHHHHH---HH---HHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCc-ccccCccHHHH
Q 018632          105 LEECKDF---FR---TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI-GFHPDAGASFY  177 (353)
Q Consensus       105 ~~~~~~~---~~---~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~-G~~p~~g~~~~  177 (353)
                      .+....+   ..   ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|  ++++ 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~-  161 (298)
T PRK12478         85 WDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW-  161 (298)
T ss_pred             cCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH-
Confidence            0001111   01   11235567889999999999999999999999999999999999999999997 8875  3333 


Q ss_pred             HhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHH
Q 018632          178 LSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI  256 (353)
Q Consensus       178 l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (353)
                       .+++|.. |++|++||++++|+||+++||||+|||++++++.+.                                   
T Consensus       162 -~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~-----------------------------------  205 (298)
T PRK12478        162 -LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVA-----------------------------------  205 (298)
T ss_pred             -HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH-----------------------------------
Confidence             2569998 999999999999999999999999999988875444                                   


Q ss_pred             HHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHhhhcC
Q 018632          257 DIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGVSRL  335 (353)
Q Consensus       257 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~~~~l~~e~~~~~~~~~~~  335 (353)
                                                      +++++|+..||.+++.+|++++.... .++.++++.|...+..+..  
T Consensus       206 --------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~--  251 (298)
T PRK12478        206 --------------------------------EVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRN--  251 (298)
T ss_pred             --------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc--
Confidence                                            34899999999999999999998766 4699999999999988887  


Q ss_pred             CCCChh--------hhhhheeccCC
Q 018632          336 ISGDFY--------EVSNFQILNKH  352 (353)
Q Consensus       336 ~~~d~~--------egi~afl~~~~  352 (353)
                       ++|++        ||++||++||+
T Consensus       252 -s~d~~e~~~~~~~egv~Af~ekR~  275 (298)
T PRK12478        252 -TPDALEFIRTAETQGVRAAVERRD  275 (298)
T ss_pred             -ChhHHHHHHHHHHHHHHHHHHhcC
Confidence             99997        59999999986

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.7e-45  Score=331.47  Aligned_cols=210  Identities=20%  Similarity=0.291  Sum_probs=185.1

Q ss_pred             CCCceEEEEe-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhc
Q 018632           32 LCNQVLVEGK-----ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQ  102 (353)
Q Consensus        32 ~~~~v~~~~~-----~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~  102 (353)
                      |+++|.++..     ++|++|+||||++ |+||++|+.+|.++++.++.|+++++    |.|++||+|+|++++...   
T Consensus         1 ~~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~---   76 (222)
T PRK05869          1 MNEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTL---   76 (222)
T ss_pred             CccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhcc---
Confidence            3556666665     8899999999985 99999999999999999999999998    889999999999987542   


Q ss_pred             CChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcC
Q 018632          103 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  182 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~  182 (353)
                       ..+....+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++
T Consensus        77 -~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i  155 (222)
T PRK05869         77 -SAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAA  155 (222)
T ss_pred             -ChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHh
Confidence             1122223344566788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 018632          183 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  261 (353)
Q Consensus       183 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (353)
                      |.. +++++++|++++|+||+++||||+++|++++.+.+.                                        
T Consensus       156 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------  195 (222)
T PRK05869        156 GPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAA----------------------------------------  195 (222)
T ss_pred             CHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHH----------------------------------------
Confidence            999 999999999999999999999999999888764333                                        


Q ss_pred             hcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhh
Q 018632          262 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGR  313 (353)
Q Consensus       262 ~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~  313 (353)
                                                 +++++|+..+|.+++.+|++++...
T Consensus       196 ---------------------------~~a~~ia~~~~~a~~~~K~~~~~~~  220 (222)
T PRK05869        196 ---------------------------AWARRFLDGPPHALAAAKAGISDVY  220 (222)
T ss_pred             ---------------------------HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence                                       4589999999999999999998654

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=4.7e-45  Score=363.23  Aligned_cols=243  Identities=15%  Similarity=0.075  Sum_probs=214.2

Q ss_pred             eEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCccc----CCCCC-cccCcchhhH
Q 018632           36 VLVEGKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWEN-DPNIGF----GSGRA-FCAGGDIVSL   96 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~-------------Nal~~~~~~~L~~~l~~~~~-d~~v~v----g~g~~-F~aG~Dl~~~   96 (353)
                      +.++++++|++||||||+++             |+|+.+|+.+|.+++..++. |++|++    |.|+. ||+|+|++.+
T Consensus       260 v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~  339 (546)
T TIGR03222       260 VAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLE  339 (546)
T ss_pred             EEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccc
Confidence            55667899999999999999             99999999999999999984 599998    88887 9999999832


Q ss_pred             HHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEE-cccccccc-ccccccCCeEEE-------eCceEEeccCCCcc
Q 018632           97 YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL-NGVTMGGG-AGVSIPGTFRVA-------CGKTVFATPETLIG  167 (353)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav-~G~a~GgG-~~lal~cD~ria-------~~~a~f~~pe~~~G  167 (353)
                      ..    .+............+++..|..+||||||+| ||+|+||| ++|+++||+||+       +++++|++||+++|
T Consensus       340 ~~----~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lG  415 (546)
T TIGR03222       340 AH----KDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFG  415 (546)
T ss_pred             cc----ccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccc
Confidence            11    1111112223334567888999999999999 89999999 999999999999       89999999999999


Q ss_pred             cccCccHHHHHhhcC-hHH-H--HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhc
Q 018632          168 FHPDAGASFYLSHLP-GHL-G--EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSD  243 (353)
Q Consensus       168 ~~p~~g~~~~l~r~~-g~~-a--~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  243 (353)
                      ++|++|++++|++++ |.. +  .++++||+.++|+||+++|||++|+|++++.+.+.                      
T Consensus       416 l~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~----------------------  473 (546)
T TIGR03222       416 LYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIR----------------------  473 (546)
T ss_pred             cCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHH----------------------
Confidence            999999999999998 987 7  66999999999999999999999999988865444                      


Q ss_pred             ccCCChhhHHHHHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHH-HH
Q 018632          244 LVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-LV  322 (353)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~-l~  322 (353)
                                                                   +++++|++.||.|++.+|++++.....+++++ +.
T Consensus       474 ---------------------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~  508 (546)
T TIGR03222       474 ---------------------------------------------IALEERASFSPDALTGLEANLRFAGPETMETRIFG  508 (546)
T ss_pred             ---------------------------------------------HHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHH
Confidence                                                         34899999999999999999999999999999 99


Q ss_pred             HHHHHHHHhhhcCCCCChhh---hhhheeccCC
Q 018632          323 REYRMSLQGVSRLISGDFYE---VSNFQILNKH  352 (353)
Q Consensus       323 ~e~~~~~~~~~~~~~~d~~e---gi~afl~~~~  352 (353)
                      .|...+..++.   ++|.+|   |+++|++||+
T Consensus       509 ~e~~~~~~~~~---~~d~~e~~~g~~af~ekr~  538 (546)
T TIGR03222       509 RLTAWQNWIFN---RPNAVGENGALKVYGSGKK  538 (546)
T ss_pred             HHHHHHHHHhc---CCcccchhhHHHHHccCCC
Confidence            99999988887   999999   9999999996

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-44  Score=337.19  Aligned_cols=231  Identities=22%  Similarity=0.261  Sum_probs=197.4

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhh-c-----
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMN-Q-----  102 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~-~-----  102 (353)
                      ++.+.++.+++|++||||||+++|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++..... .     
T Consensus         3 ~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~   82 (288)
T PRK08290          3 YEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ   82 (288)
T ss_pred             CceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccc
Confidence            4568899999999999999999999999999999999999999999998    99999999999998632110 0     


Q ss_pred             -----------CC-hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCccccc
Q 018632          103 -----------GK-LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP  170 (353)
Q Consensus       103 -----------~~-~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p  170 (353)
                                 .. ..........+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~  161 (288)
T PRK08290         83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-P  161 (288)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-C
Confidence                       00 0011112234456777889999999999999999999999999999999999999999999998 4


Q ss_pred             CccHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCCh
Q 018632          171 DAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDK  249 (353)
Q Consensus       171 ~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (353)
                      + ++++++++++|.. +++|++||+.++|+||+++|||++|+|++++++.+.                            
T Consensus       162 ~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~----------------------------  212 (288)
T PRK08290        162 G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETL----------------------------  212 (288)
T ss_pred             c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHH----------------------------
Confidence            4 4567789999999 999999999999999999999999999887765443                            


Q ss_pred             hhHHHHHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcC-CHHHHHHHHHHHH
Q 018632          250 NSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMS  328 (353)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~-~~~~~l~~e~~~~  328 (353)
                                                             +++++|++.+|.+++.+|++++..... +++++++.|....
T Consensus       213 ---------------------------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~  253 (288)
T PRK08290        213 ---------------------------------------ELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDLH  253 (288)
T ss_pred             ---------------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence                                                   448999999999999999999988765 7999999999988


Q ss_pred             HHhh
Q 018632          329 LQGV  332 (353)
Q Consensus       329 ~~~~  332 (353)
                      ...+
T Consensus       254 ~~~~  257 (288)
T PRK08290        254 QLGH  257 (288)
T ss_pred             HHcc
Confidence            7766

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=1.5e-44  Score=360.78  Aligned_cols=242  Identities=14%  Similarity=0.052  Sum_probs=211.8

Q ss_pred             EEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCccc----CCC-CCcccCcchhhHH
Q 018632           37 LVEGKANSRMAILNRPSAL-------------NALNTNMGAKLNKLFKAWEN-DPNIGF----GSG-RAFCAGGDIVSLY   97 (353)
Q Consensus        37 ~~~~~~~v~~I~lnrp~~~-------------Nal~~~~~~~L~~~l~~~~~-d~~v~v----g~g-~~F~aG~Dl~~~~   97 (353)
                      .++++++|++||||||+++             |+||.+|+.+|.++++.++. |++|++    |.| ++||+|+|++.+.
T Consensus       265 ~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~  344 (550)
T PRK08184        265 EIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLA  344 (550)
T ss_pred             EEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhc
Confidence            3455689999999999988             68999999999999999986 789887    888 4999999987321


Q ss_pred             HhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEc-ccccccc-ccccccCCeEEEe-------CceEEeccCCCccc
Q 018632           98 HFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILN-GVTMGGG-AGVSIPGTFRVAC-------GKTVFATPETLIGF  168 (353)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~-G~a~GgG-~~lal~cD~ria~-------~~a~f~~pe~~~G~  168 (353)
                       .   .+.............++.++..+||||||+|| |+|+||| ++|+++||+||++       ++++|++||+++|+
T Consensus       345 -~---~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl  420 (550)
T PRK08184        345 -H---KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGL  420 (550)
T ss_pred             -c---cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccC
Confidence             1   11111122334455678889999999999997 9999999 9999999999999       99999999999999


Q ss_pred             ccCccHHHHHhhc-ChHH-HHHH--HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcc
Q 018632          169 HPDAGASFYLSHL-PGHL-GEFL--ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDL  244 (353)
Q Consensus       169 ~p~~g~~~~l~r~-~g~~-a~~l--~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~  244 (353)
                      +|++|++++|+++ +|.. |+++  ++||++++|+||+++|||++|+|++++++.+.                       
T Consensus       421 ~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~-----------------------  477 (550)
T PRK08184        421 YPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVR-----------------------  477 (550)
T ss_pred             CCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHH-----------------------
Confidence            9999999999988 6998 9887  58999999999999999999999988875444                       


Q ss_pred             cCCChhhHHHHHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHH-HHH
Q 018632          245 VYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-LVR  323 (353)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~-l~~  323 (353)
                                                                  +++++|++.||.+++.+|++++.....+++++ +.+
T Consensus       478 --------------------------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~  513 (550)
T PRK08184        478 --------------------------------------------IALEERASLSPDALTGMEANLRFAGPETMETRIFGR  513 (550)
T ss_pred             --------------------------------------------HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence                                                        34899999999999999999999999999999 999


Q ss_pred             HHHHHHHhhhcCCCCChhh---hhhheeccCC
Q 018632          324 EYRMSLQGVSRLISGDFYE---VSNFQILNKH  352 (353)
Q Consensus       324 e~~~~~~~~~~~~~~d~~e---gi~afl~~~~  352 (353)
                      |...+..++.   ++|.+|   |+++|++||+
T Consensus       514 e~~~~~~~~~---~~d~~e~~~g~~af~ekr~  542 (550)
T PRK08184        514 LTAWQNWIFQ---RPNAVGEKGALKVYGTGQK  542 (550)
T ss_pred             HHHHHHHHhc---CCcccccchHHHHhccCCC
Confidence            9999988887   999999   9999999986

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=7.3e-44  Score=330.99  Aligned_cols=248  Identities=16%  Similarity=0.163  Sum_probs=196.6

Q ss_pred             cCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCccc----CC-CCCcccCcchhhHHHh
Q 018632           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWEN-----DPNIGF----GS-GRAFCAGGDIVSLYHF   99 (353)
Q Consensus        30 ~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~-----d~~v~v----g~-g~~F~aG~Dl~~~~~~   99 (353)
                      ....-.|.++.+++|++|+|| |++.|+||.+|+.+|.+++++++.     |++|++    |. |++||+|+|++++...
T Consensus        13 ~~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~   91 (287)
T PRK08788         13 ELSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAEL   91 (287)
T ss_pred             ccCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhh
Confidence            333445777788999999996 889999999999999999999998     888887    77 7999999999987532


Q ss_pred             hhcCChHHHHHHHHHHHHHHHHHh---hCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHH
Q 018632          100 MNQGKLEECKDFFRTLYSFIYLLG---THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF  176 (353)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~l~---~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~  176 (353)
                      ....+.+....+...+...+..+.   .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~  171 (287)
T PRK08788         92 IRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYS  171 (287)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHH
Confidence            111121222222222333333333   79999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHH
Q 018632          177 YLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR  255 (353)
Q Consensus       177 ~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (353)
                      ++++++|.. +++|++||+.++|+||+++||||+++|++++.+.+.                                  
T Consensus       172 ~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~----------------------------------  217 (287)
T PRK08788        172 FLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVR----------------------------------  217 (287)
T ss_pred             HHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHH----------------------------------
Confidence            999999999 999999999999999999999999999888765443                                  


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcC
Q 018632          256 IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRL  335 (353)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~  335 (353)
                                                       +++++|++. |.+....|+..+.....++++.++.|......+.+. 
T Consensus       218 ---------------------------------~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  262 (287)
T PRK08788        218 ---------------------------------TFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQL-  262 (287)
T ss_pred             ---------------------------------HHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhc-
Confidence                                             347888876 777777777777666678899999887777665541 


Q ss_pred             CCCChhhhhhhee
Q 018632          336 ISGDFYEVSNFQI  348 (353)
Q Consensus       336 ~~~d~~egi~afl  348 (353)
                       ...-.+-|..|+
T Consensus       263 -~~~~~~~~~~~~  274 (287)
T PRK08788        263 -EEKDLRTMERLV  274 (287)
T ss_pred             -ccccHHHHHHHH
Confidence             333444454443

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=2.8e-44  Score=372.01  Aligned_cols=284  Identities=18%  Similarity=0.212  Sum_probs=221.2

Q ss_pred             ceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        35 ~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      .+.++. +++|++||||||++.|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.... ..+.....
T Consensus         7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~-~~~~~~~~   85 (715)
T PRK11730          7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLF-AAPEEELS   85 (715)
T ss_pred             eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhc-cCCHHHHH
Confidence            467774 78999999999999999999999999999999999999988    8899999999999876421 11222334


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      .+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++
T Consensus        86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~  165 (715)
T PRK11730         86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE  165 (715)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence            5556667788899999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHH-hhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG-KLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      |++||++++|+||+++||||+|+|++++.+.+..++ +++..+.. ...    .......... .           +...
T Consensus       166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~-~~~----~~~~~~~p~a-~-----------~~~~  228 (715)
T PRK11730        166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLD-WKA----RRQPKLEPLK-L-----------SKIE  228 (715)
T ss_pred             HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCc-ccc----ccCccccccc-c-----------cchh
Confidence            999999999999999999999999988877666553 33321100 000    0000000000 0           0000


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                      ....+...++           .+.++..++.|.++ .++++++.+...+++++++.|.+.+..++.   ++|++||+++|
T Consensus       229 ~~~~~~~~k~-----------~~~~~~~~~~pa~~-~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~d~~egi~aF  293 (715)
T PRK11730        229 AMMSFTTAKG-----------MVAQKAGKHYPAPM-TAVKTIEAAAGLGRDEALELEAKGFVKLAK---TNVARALVGIF  293 (715)
T ss_pred             HHHHHHHHHH-----------HHHHhhccCCccHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence            0000011111           11245566667666 688899988888999999999999999997   99999999999


Q ss_pred             eccC
Q 018632          348 ILNK  351 (353)
Q Consensus       348 l~~~  351 (353)
                      +++|
T Consensus       294 ~~~~  297 (715)
T PRK11730        294 LNDQ  297 (715)
T ss_pred             HHHH
Confidence            9986

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-44  Score=325.27  Aligned_cols=223  Identities=15%  Similarity=0.123  Sum_probs=195.4

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKD  110 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~  110 (353)
                      .+.|.++.+++|++||||||+ .|++|.+++.+|.++++.++.+..+.+  |.|++||+|+|++++...     .+....
T Consensus         2 ~~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~~~~   75 (229)
T PRK06213          2 SELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAEDDRAVVVITGQPGIFSGGFDLKVMTSG-----AQAAIA   75 (229)
T ss_pred             cceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhhccCcEEEEeCCCCceEcCcCHHHHhcc-----hHhHHH
Confidence            446889999999999999984 699999999999999999984444434  899999999999987531     233344


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCc-eEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          111 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       111 ~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      +...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|+.|+..++++++|.. +++
T Consensus        76 ~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~  155 (229)
T PRK06213         76 LLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQR  155 (229)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHH
Confidence            5566778888999999999999999999999999999999999999 99999999999998888888899999998 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      ++++|++++|+||+++||||+|+|++++.+.+.                                               
T Consensus       156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------------  188 (229)
T PRK06213        156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQ-----------------------------------------------  188 (229)
T ss_pred             HHHcCcccCHHHHHHCCCceeccChHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999888764333                                               


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS  328 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~  328 (353)
                                          +++++|++.+|.++..+|++++......+.++++.|.+.+
T Consensus       189 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~  228 (229)
T PRK06213        189 --------------------AAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAEF  228 (229)
T ss_pred             --------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence                                4489999999999999999999888888889888887654

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.3e-44  Score=307.13  Aligned_cols=250  Identities=21%  Similarity=0.261  Sum_probs=226.4

Q ss_pred             CCceEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc-----CCCCCcccCcchhhHHHhhhcC
Q 018632           33 CNQVLVEG----KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF-----GSGRAFCAGGDIVSLYHFMNQG  103 (353)
Q Consensus        33 ~~~v~~~~----~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v-----g~g~~F~aG~Dl~~~~~~~~~~  103 (353)
                      ...+.+++    +.+|.+|-+|||.+.|+|+.-|+++|.++++.+..|+.++|     ..++.||+|+||++-..+    
T Consensus        26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M----  101 (291)
T KOG1679|consen   26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM----  101 (291)
T ss_pred             CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC----
Confidence            33455553    45899999999999999999999999999999999999998     567999999999987764    


Q ss_pred             ChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcCh
Q 018632          104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  183 (353)
Q Consensus       104 ~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g  183 (353)
                      +..+...|...+..++..+.++|.||||+|+|.++|||++|+++||+|+|+++++|+++|.+++++|+.|++++|+|.+|
T Consensus       102 s~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg  181 (291)
T KOG1679|consen  102 SPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVG  181 (291)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHh
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHh
Q 018632          184 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  262 (353)
Q Consensus       184 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
                      .. ++||++|++.+++.||...||||++|...+-.+.+..                                        
T Consensus       182 ~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~----------------------------------------  221 (291)
T KOG1679|consen  182 VALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQ----------------------------------------  221 (291)
T ss_pred             HHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHH----------------------------------------
Confidence            99 9999999999999999999999999976432211110                                        


Q ss_pred             cCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018632          263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  342 (353)
Q Consensus       263 ~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  342 (353)
                                             -+.+++++|.-+.|.++++.|..++.+...++..++..|.....+.+.   +.|..|
T Consensus       222 -----------------------kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~---t~drLe  275 (291)
T KOG1679|consen  222 -----------------------KALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIP---TKDRLE  275 (291)
T ss_pred             -----------------------HHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCc---HHHHHH
Confidence                                   012579999999999999999999999999999999999999999998   999999


Q ss_pred             hhhheeccCC
Q 018632          343 VSNFQILNKH  352 (353)
Q Consensus       343 gi~afl~~~~  352 (353)
                      |+.+|-++|+
T Consensus       276 glaaf~ekr~  285 (291)
T KOG1679|consen  276 GLAAFKEKRK  285 (291)
T ss_pred             HHHHHHhhcC
Confidence            9999999986

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-43  Score=331.84  Aligned_cols=213  Identities=20%  Similarity=0.234  Sum_probs=181.0

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcC---C
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQG---K  104 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~---~  104 (353)
                      .++.|.++.+++|++||||||+++|++|.+|+.+|.++++.++.|++|++    |.|++||+|.|++++.......   .
T Consensus         8 ~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~   87 (302)
T PRK08272          8 NLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGG   87 (302)
T ss_pred             CCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccccc
Confidence            35568999999999999999999999999999999999999999999988    9999999999999886532110   0


Q ss_pred             ----------------hHH--HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCc
Q 018632          105 ----------------LEE--CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI  166 (353)
Q Consensus       105 ----------------~~~--~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~  166 (353)
                                      ...  ...+...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~  167 (302)
T PRK08272         88 AYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRV  167 (302)
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhc
Confidence                            000  01234556677888999999999999999999999999999999999999999999998


Q ss_pred             ccccCccHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccc
Q 018632          167 GFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLV  245 (353)
Q Consensus       167 G~~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  245 (353)
                      |.+|+.   ..+++++|.. |++|++||++++|+||+++||||+++|++++++.+.                        
T Consensus       168 gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~------------------------  220 (302)
T PRK08272        168 WGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTE------------------------  220 (302)
T ss_pred             ccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHH------------------------
Confidence            666643   2467899999 999999999999999999999999999888765444                        


Q ss_pred             CCChhhHHHHHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc
Q 018632          246 YPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF  314 (353)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~  314 (353)
                                                                 +++++|++.||.+++.+|++++...+
T Consensus       221 -------------------------------------------~la~~ia~~~~~a~~~~K~~l~~~~~  246 (302)
T PRK08272        221 -------------------------------------------RLVERIAAVPVNQLAMVKLAVNSALL  246 (302)
T ss_pred             -------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                                                       34888999999999999999987654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=6.8e-43  Score=361.68  Aligned_cols=280  Identities=17%  Similarity=0.221  Sum_probs=217.8

Q ss_pred             CCCceEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCccc----CC-CCCcccCcchhhHHHhhhcCC
Q 018632           32 LCNQVLVEG-KANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGF----GS-GRAFCAGGDIVSLYHFMNQGK  104 (353)
Q Consensus        32 ~~~~v~~~~-~~~v~~I~lnrp-~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~-g~~F~aG~Dl~~~~~~~~~~~  104 (353)
                      |...+.++. +++|++|||||| ++.|+||.+|+.+|.++++.++.|++|++    |. |++||+|+|++++...   ..
T Consensus         3 ~~~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~---~~   79 (708)
T PRK11154          3 MASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAAC---KT   79 (708)
T ss_pred             CCceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhcc---CC
Confidence            344577787 789999999999 68999999999999999999999999886    54 5899999999987542   11


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCc--eEEeccCCCcccccCccHHHHHhhcC
Q 018632          105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLP  182 (353)
Q Consensus       105 ~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~r~~  182 (353)
                      .+....+......++.++.++||||||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~v  159 (708)
T PRK11154         80 AQEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLI  159 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhc
Confidence            2223344455667888999999999999999999999999999999999996  59999999999999999999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 018632          183 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  261 (353)
Q Consensus       183 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (353)
                      |.. |++|+++|++++|+||+++||||+++|++++.+.+.++++.....+..+.  +..                    .
T Consensus       160 G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~--~~~--------------------~  217 (708)
T PRK11154        160 GVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLP--VRE--------------------R  217 (708)
T ss_pred             CHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCC--chh--------------------h
Confidence            999 99999999999999999999999999998887655555321000000000  000                    0


Q ss_pred             hcCcC--CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 018632          262 CFGLD--TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD  339 (353)
Q Consensus       262 ~~~~~--~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d  339 (353)
                      +.+.+  ....+++.            +.+.+.+-.+....|+..+|++++.+...+++++++.|.+.+..++.   |+|
T Consensus       218 ~~~~~p~~~~~~~~~------------~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~  282 (708)
T PRK11154        218 LLEGNPLGRALLFKQ------------ARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAM---TPE  282 (708)
T ss_pred             hcccCchhHHHHHHH------------HHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHH
Confidence            00000  00111111            11122222343457999999999999889999999999999999997   999


Q ss_pred             hhhhhhheeccC
Q 018632          340 FYEVSNFQILNK  351 (353)
Q Consensus       340 ~~egi~afl~~~  351 (353)
                      +++|+++|+.++
T Consensus       283 ~~~~~~aF~~~~  294 (708)
T PRK11154        283 SAALRSIFFATT  294 (708)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998664

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=3.6e-42  Score=322.77  Aligned_cols=270  Identities=17%  Similarity=0.241  Sum_probs=212.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSF  118 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l  118 (353)
                      +++|+||||+++|++|.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++..... ........+...+.++
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~-~~~~~~~~~~~~~~~l  116 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA-GNPQEYRQYMRLFNDM  116 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc-cChhHHHHHHHHHHHH
Confidence            55699999999999999999999999999999999998    888 69999999998765321 1223334455556778


Q ss_pred             HHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHHhcCCCCC
Q 018632          119 IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLN  197 (353)
Q Consensus       119 ~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~  197 (353)
                      +..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++++++|++++
T Consensus       117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s  196 (360)
T TIGR03200       117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS  196 (360)
T ss_pred             HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence            8899999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHcCccceecCCCCh------------hHHHHHHHhhhcCC-HH--HHHHHHHHhhcccCCChhhHHHHHHHHHHh
Q 018632          198 GAEMMACGLATHYSVSEKL------------PLIEEELGKLVTDD-PS--VIEACLEKYSDLVYPDKNSVIHRIDIVDKC  262 (353)
Q Consensus       198 a~eA~~~Glv~~vv~~~~l------------~~~~~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
                      |+||+++|||++|+|+.++            ++..+.+.++...+ ..  ++.+.|..+......               
T Consensus       197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~---------------  261 (360)
T TIGR03200       197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGTID---------------  261 (360)
T ss_pred             HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcccch---------------
Confidence            9999999999999999887            55555554433332 22  555566555532111               


Q ss_pred             cCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018632          263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  342 (353)
Q Consensus       263 ~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  342 (353)
                           ...+-+.            ..+++.++....|..+..+++-++..+.......-+.-..-+.-.+    ..+..+
T Consensus       262 -----~~~l~~~------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  320 (360)
T TIGR03200       262 -----LSLLDEA------------VEALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNM----MNEART  320 (360)
T ss_pred             -----HhHHHHH------------HHHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhc----ccccch
Confidence                 0011111            1135778888889999999999998776665555444333333333    578999


Q ss_pred             hhhheecc
Q 018632          343 VSNFQILN  350 (353)
Q Consensus       343 gi~afl~~  350 (353)
                      |++||-++
T Consensus       321 ~~~~~~~~  328 (360)
T TIGR03200       321 GFRAFNEG  328 (360)
T ss_pred             hhHHHhcc
Confidence            99999994

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=2.6e-42  Score=356.55  Aligned_cols=275  Identities=19%  Similarity=0.207  Sum_probs=215.3

Q ss_pred             EEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCccc-----CCCCCcccCcchhhHHHhhhcCChHHHHHHH
Q 018632           39 EGKANSRMAILNRP-SALNALNTNMGAKLNKLFKAWENDPNIGF-----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFF  112 (353)
Q Consensus        39 ~~~~~v~~I~lnrp-~~~Nal~~~~~~~L~~~l~~~~~d~~v~v-----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~  112 (353)
                      +.+++|++|||||| ++.|+||.+|+.+|.++++.++.|++|++     |.|++||+|+|++++...   .+......+.
T Consensus         6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~---~~~~~~~~~~   82 (699)
T TIGR02440         6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAAC---QTAGEAKALA   82 (699)
T ss_pred             EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhcc---CChhHHHHHH
Confidence            45689999999999 68999999999999999999999999885     788999999999987532   1222333445


Q ss_pred             HHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCc--eEEeccCCCcccccCccHHHHHhhcChHH-HHHH
Q 018632          113 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  189 (353)
Q Consensus       113 ~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l  189 (353)
                      ...+.++..+.++||||||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|.. +++|
T Consensus        83 ~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~l  162 (699)
T TIGR02440        83 QQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDM  162 (699)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHH
Confidence            56677888999999999999999999999999999999999986  79999999999999999999999999999 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHH
Q 018632          190 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  269 (353)
Q Consensus       190 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (353)
                      +++|+.++|+||+++||||+++|++++.+.+..+++......... .....+...+                   .....
T Consensus       163 lltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~-~~~~~~~~~~-------------------~~a~~  222 (699)
T TIGR02440       163 ILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPL-SLQERLLEGT-------------------PLGRA  222 (699)
T ss_pred             HHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCc-cchhhhcccC-------------------chhHH
Confidence            999999999999999999999999888766655532100000000 0000000000                   00001


Q ss_pred             HHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 018632          270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL  349 (353)
Q Consensus       270 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~  349 (353)
                      .+.+.            +.+.+.+-.+....|...+|++++.+...+++++++.|.+.+..++.   ++|.++++.+|+.
T Consensus       223 ~~~~~------------~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~~~~f~~  287 (699)
T TIGR02440       223 LLFDQ------------AAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVM---TPESAALRSIFFA  287 (699)
T ss_pred             HHHHH------------HHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence            11111            11123333455577888899999999999999999999999999998   9999999999986


Q ss_pred             cC
Q 018632          350 NK  351 (353)
Q Consensus       350 ~~  351 (353)
                      ++
T Consensus       288 ~~  289 (699)
T TIGR02440       288 TT  289 (699)
T ss_pred             HH
Confidence            53

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=4.3e-43  Score=301.94  Aligned_cols=244  Identities=21%  Similarity=0.309  Sum_probs=211.1

Q ss_pred             EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhh--c-C-C----hHH
Q 018632           40 GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMN--Q-G-K----LEE  107 (353)
Q Consensus        40 ~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~--~-~-~----~~~  107 (353)
                      .+..|.++.||||.|.|+|+..|+.|+.++++.++.||++++    |.|++||+|+|+..+.....  + + +    ...
T Consensus        28 ~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g~~  107 (292)
T KOG1681|consen   28 AQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKGRS  107 (292)
T ss_pred             CCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccchHhhhhHH
Confidence            345699999999999999999999999999999999999999    99999999999877654311  1 1 1    233


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH-H-
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-L-  185 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~-~-  185 (353)
                      ...+...+++.+..|.+||||||++|+|+|+|+|+.|..+||+|+|+++|.|+.-|+.+|+..+.|...+||..+|. . 
T Consensus       108 lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~  187 (292)
T KOG1681|consen  108 LRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSL  187 (292)
T ss_pred             HHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999995 4 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      ++++.+|++.++|.||++.|||.+|+|+.+-. ....+                                          
T Consensus       188 ~~elafTar~f~a~EAl~~GLvSrvf~dk~~l-l~~~l------------------------------------------  224 (292)
T KOG1681|consen  188 ARELAFTARKFSADEALDSGLVSRVFPDKEEL-LNGAL------------------------------------------  224 (292)
T ss_pred             HHHHHhhhhhcchhhhhhcCcchhhcCCHHHH-HhhhH------------------------------------------
Confidence            99999999999999999999999999975422 11222                                          


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                                             .+|..|+..||.++..||+.|+++++.+.++.|..=.---...+.   +.|+.+.+.
T Consensus       225 -----------------------~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~---s~Dl~~av~  278 (292)
T KOG1681|consen  225 -----------------------PMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSMLL---SDDLVKAVM  278 (292)
T ss_pred             -----------------------HHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHH
Confidence                                   468999999999999999999999999999998864433333333   899999999


Q ss_pred             heeccCC
Q 018632          346 FQILNKH  352 (353)
Q Consensus       346 afl~~~~  352 (353)
                      +.++|++
T Consensus       279 a~m~k~k  285 (292)
T KOG1681|consen  279 AQMEKLK  285 (292)
T ss_pred             HHhhcCC
Confidence            9998764

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=5e-42  Score=302.10  Aligned_cols=250  Identities=22%  Similarity=0.287  Sum_probs=224.5

Q ss_pred             CCceEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           33 CNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~ln-rp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      +..+.+++++++.+|.+| ||++.|+++.+++.++..+++.+..|+++.+    |.|++||+|.|+..+......+..+.
T Consensus         6 ~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~   85 (266)
T KOG0016|consen    6 YREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEE   85 (266)
T ss_pred             ccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccccc
Confidence            456899999999999999 9999999999999999999999999999765    89999999999999877643333222


Q ss_pred             HH---HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          108 CK---DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       108 ~~---~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      ..   ++...+..++..+..+|||+||.|||+|+|.|+.+...||+++|+|+++|..|+..+|++|++++++.+|+++|.
T Consensus        86 ~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~  165 (266)
T KOG0016|consen   86 SDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGS  165 (266)
T ss_pred             chhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhch
Confidence            22   233444458888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . |.||++.|++++|+||.+.|||++|++.+.+.+.+.                                          
T Consensus       166 ~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~------------------------------------------  203 (266)
T KOG0016|consen  166 ASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVL------------------------------------------  203 (266)
T ss_pred             hhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999988764322                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                                               +.++++++.+|.+++..|++++......+..+.+.|.+.....|.   ++|+.+.
T Consensus       204 -------------------------~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~---s~e~~~~  255 (266)
T KOG0016|consen  204 -------------------------KKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWV---SAECLAR  255 (266)
T ss_pred             -------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcc---ChHHHHH
Confidence                                     337889999999999999999999889999999999999999998   9999999


Q ss_pred             hhheeccCC
Q 018632          344 SNFQILNKH  352 (353)
Q Consensus       344 i~afl~~~~  352 (353)
                      +.+|+.++.
T Consensus       256 ~~~~~~~~~  264 (266)
T KOG0016|consen  256 FKQYLSKKR  264 (266)
T ss_pred             HHHHhcccc
Confidence            999998864

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=1.4e-40  Score=343.87  Aligned_cols=283  Identities=15%  Similarity=0.197  Sum_probs=216.7

Q ss_pred             ceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        35 ~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      .+.++. +++|++|+||||++.|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++..... .+.....
T Consensus         7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~   85 (714)
T TIGR02437         7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFA-LPDAELI   85 (714)
T ss_pred             eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhccc-CCHHHHH
Confidence            567774 78999999999999999999999999999999999999988    88899999999999864211 1222334


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      .+....++++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |.+
T Consensus        86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~  165 (714)
T TIGR02437        86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE  165 (714)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence            4555667788999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHH-hhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG-KLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      |++||++++|+||+++||||+++|++++.+.+..++ ++....+.       ...... +......  ...+..+++.  
T Consensus       166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~-------~~~~~~-~~~~~~~--~~~~~~~~~~--  233 (714)
T TIGR02437       166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLD-------WKAKRQ-PKLEPLK--LSKIEAMMSF--  233 (714)
T ss_pred             HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCc-------ccccCC-CCccccc--ccchHHHHHH--
Confidence            999999999999999999999999888876665553 21111000       000000 0000000  0001111110  


Q ss_pred             HHHHHHHHHhccCCCCCchHHH-HHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          268 VEEIIDSLESEASLINDPWCGS-TLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~-~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                       +++.+ ..++-..+ ..+-....+.+..+...+++++++.|.+.|.+++.   |++.+.++..
T Consensus       234 -----------------~~~~~~~~~~~~~~-~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~---s~~a~~l~~~  292 (714)
T TIGR02437       234 -----------------TTAKGMVAQVAGPH-YPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAK---TSEAKALIGL  292 (714)
T ss_pred             -----------------HHHHHHHHHhhcCC-CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                             11112 12232333 33444466788888888999999999999999998   9999999999


Q ss_pred             eeccC
Q 018632          347 QILNK  351 (353)
Q Consensus       347 fl~~~  351 (353)
                      |+.+|
T Consensus       293 ff~~r  297 (714)
T TIGR02437       293 FLNDQ  297 (714)
T ss_pred             HhhhH
Confidence            98875

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=1.4e-40  Score=302.76  Aligned_cols=180  Identities=17%  Similarity=0.156  Sum_probs=153.7

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcc-c----CCCCCcccCcchhhHHHhhhcCChHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG-F----GSGRAFCAGGDIVSLYHFMNQGKLEECKD  110 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~-v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~  110 (353)
                      +.++.+++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +    |.|++||+|+|++++...  .........
T Consensus         2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~--~~~~~~~~~   78 (239)
T PLN02267          2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA--GSAPSRLHL   78 (239)
T ss_pred             ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc--ccCHHHHHH
Confidence            5788899999999999985 9999999999999999999988865 3    888999999999986431  112222233


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEe-CceEEeccCCCcccccCccHHHHHhhcChHH-H-H
Q 018632          111 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPDAGASFYLSHLPGHL-G-E  187 (353)
Q Consensus       111 ~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a-~  187 (353)
                      +...+.+++.++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+++++.++++++|.. + +
T Consensus        79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~  158 (239)
T PLN02267         79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARR  158 (239)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHH
Confidence            44556778889999999999999999999999999999999998 5789999999999974444577899999988 7 6


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCC-CChhH
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVS-EKLPL  218 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~-~~l~~  218 (353)
                      +|+++|++++|+||+++||||+|+|+ +++.+
T Consensus       159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~  190 (239)
T PLN02267        159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVE  190 (239)
T ss_pred             HHHHcCCcCCHHHHHHCCCcceecCCHHHHHH
Confidence            99999999999999999999999985 45654

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=2.2e-40  Score=343.09  Aligned_cols=293  Identities=16%  Similarity=0.168  Sum_probs=212.8

Q ss_pred             CceEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCccc-----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           34 NQVLVEGKANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGF-----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~v-----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      +.+.++.+++|++||||||+ +.|+||.+++.+|.++++.++.|++|++     |.|++||+|+|++++...   .+.+.
T Consensus        13 ~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~---~~~~~   89 (737)
T TIGR02441        13 THRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAAC---KTAQE   89 (737)
T ss_pred             CeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhcc---CChHH
Confidence            45888899999999999998 5899999999999999999999999873     889999999999998641   22333


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCc--eEEeccCCCcccccCccHHHHHhhcChHH
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGHL  185 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~~G~~p~~g~~~~l~r~~g~~  185 (353)
                      ...+.....+++.++.++||||||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|+|++|..
T Consensus        90 ~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~  169 (737)
T TIGR02441        90 VTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVP  169 (737)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHH
Confidence            4455566778889999999999999999999999999999999999987  58999999999999999999999999998


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCC--CC---hhH-HHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHH
Q 018632          186 -GEFLALTGAKLNGAEMMACGLATHYSVS--EK---LPL-IEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDI  258 (353)
Q Consensus       186 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~--~~---l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (353)
                       |++|+++|++++|+||+++||||+|+|+  ++   +++ ..+.+...+......+...+...+........ ..     
T Consensus       170 ~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~-~~-----  243 (737)
T TIGR02441       170 AALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHK-IT-----  243 (737)
T ss_pred             HHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCc-cc-----
Confidence             9999999999999999999999999986  22   221 11111111111111111111011100000000 00     


Q ss_pred             HHHhcCc-CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCC
Q 018632          259 VDKCFGL-DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLIS  337 (353)
Q Consensus       259 ~~~~~~~-~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~  337 (353)
                       ....+. .....+++...+           ...++ .+....|...+.+.+..+...+++++++.|.+.|.+++.   |
T Consensus       244 -~~~~~~~~~~~~~~~~~~~-----------~~~~~-~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~---s  307 (737)
T TIGR02441       244 -QYVMTNPFVRQQVYKTAED-----------KVMKQ-TKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSM---T  307 (737)
T ss_pred             -hhhcccchhHHHHHHHHHH-----------HHHHh-ccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---C
Confidence             000000 001111111111           12223 233244555577788888888999999999999999998   9


Q ss_pred             CChhhhhhheeccC
Q 018632          338 GDFYEVSNFQILNK  351 (353)
Q Consensus       338 ~d~~egi~afl~~~  351 (353)
                      +..+.-+..|+.+|
T Consensus       308 ~~a~al~~~f~~~~  321 (737)
T TIGR02441       308 FESKALIGLFHGQT  321 (737)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887654

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=8.1e-39  Score=273.59  Aligned_cols=249  Identities=19%  Similarity=0.266  Sum_probs=200.3

Q ss_pred             CCCCceEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----C--CC-CCcccCcchhhHHHhhhc
Q 018632           31 DLCNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----G--SG-RAFCAGGDIVSLYHFMNQ  102 (353)
Q Consensus        31 ~~~~~v~~~~~-~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g--~g-~~F~aG~Dl~~~~~~~~~  102 (353)
                      ..++.|.+++. ++|+.|+||||+++|++.+....+|.+++..+..|++|.|    |  .| .+||+|+|-+--.....-
T Consensus        15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY   94 (282)
T COG0447          15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY   94 (282)
T ss_pred             CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence            34667999988 9999999999999999999999999999999999999988    5  35 899999997543221000


Q ss_pred             CChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcC
Q 018632          103 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  182 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~  182 (353)
                      .+.+....+  ...++-+.|+.+||||||.|+|+++|||-.|-+.||+-||+++|+|+....++|-+-++.++..|.|++
T Consensus        95 ~~d~~~~rL--nvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V  172 (282)
T COG0447          95 VDDDGIPRL--NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV  172 (282)
T ss_pred             cCCccCccc--chhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence            000111111  123455678899999999999999999999999999999999999999999999998877888899999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 018632          183 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  261 (353)
Q Consensus       183 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (353)
                      |.. |+|+.+.++.++|+||+++|+||.|||-++|++....                                       
T Consensus       173 GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~---------------------------------------  213 (282)
T COG0447         173 GQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQ---------------------------------------  213 (282)
T ss_pred             hhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHH---------------------------------------
Confidence            999 9999999999999999999999999999999864443                                       


Q ss_pred             hcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 018632          262 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  341 (353)
Q Consensus       262 ~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~  341 (353)
                                              |    ++.|.+.||.|++..|..++...+  =..+++ |+.--..++ ++.+++.+
T Consensus       214 ------------------------W----~~E~l~kSP~AlR~LK~Afnad~D--GlaG~q-~~ag~at~L-~YmTdEa~  261 (282)
T COG0447         214 ------------------------W----AREMLAKSPTALRMLKAAFNADCD--GLAGLQ-ELAGNATLL-YYMTDEAQ  261 (282)
T ss_pred             ------------------------H----HHHHHhcChHHHHHHHHHhcCCCc--hhhHHH-HhcccceEE-EEechhhh
Confidence                                    3    788999999999999998874432  122222 222222222 34699999


Q ss_pred             hhhhheeccCC
Q 018632          342 EVSNFQILNKH  352 (353)
Q Consensus       342 egi~afl~~~~  352 (353)
                      ||-.||++||+
T Consensus       262 EGr~AF~eKR~  272 (282)
T COG0447         262 EGRDAFLEKRK  272 (282)
T ss_pred             hhHHHHhhccC
Confidence            99999999996

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=1.4e-37  Score=274.70  Aligned_cols=186  Identities=33%  Similarity=0.514  Sum_probs=169.5

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDF  111 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  111 (353)
                      +.++++++|++|+||+|++.|++|.+++.+|.++++.++.|+++++    |.|+.||+|+|++++......  .+....+
T Consensus         1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~--~~~~~~~   78 (195)
T cd06558           1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDA--GEEARAF   78 (195)
T ss_pred             CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccccc--chhHHHH
Confidence            4678889999999999998999999999999999999999999998    779999999999998764211  1135677


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHH
Q 018632          112 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  190 (353)
Q Consensus       112 ~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~  190 (353)
                      ...++.++..+..++|||||+|||+|+|+|++++++||+||++++++|++||+++|++|+.|++++|++++|.. +.+++
T Consensus        79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~  158 (195)
T cd06558          79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL  158 (195)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999998 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL  223 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l  223 (353)
                      ++|+.++++||+++|||+++++++++.+.+..+
T Consensus       159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~  191 (195)
T cd06558         159 LTGRRISAEEALELGLVDEVVPDEELLAAALEL  191 (195)
T ss_pred             HcCCccCHHHHHHcCCCCeecChhHHHHHHHHH
Confidence            999999999999999999999998776555444

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=3e-37  Score=307.40  Aligned_cols=195  Identities=13%  Similarity=0.149  Sum_probs=161.9

Q ss_pred             CCcCCCCceEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCccc----CC-CCCcccCc
Q 018632           28 VTDDLCNQVLVEGKANSRMAILNRPS----------ALNALNTNMGAKLNKLFKAWE-NDPNIGF----GS-GRAFCAGG   91 (353)
Q Consensus        28 ~~~~~~~~v~~~~~~~v~~I~lnrp~----------~~Nal~~~~~~~L~~~l~~~~-~d~~v~v----g~-g~~F~aG~   91 (353)
                      +.|+.++.+.++.+++|++||||||+          ++|+||.+|+.+|.++++.++ .|+++++    |. |++||+|.
T Consensus         5 ~~~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~   84 (546)
T TIGR03222         5 TEPSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGA   84 (546)
T ss_pred             CCCCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCc
Confidence            34444667999999999999999975          899999999999999999999 7899987    65 68999999


Q ss_pred             chhhHHHhhhcCChHHHHHHH-HHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCc--eEEeccCCC-cc
Q 018632           92 DIVSLYHFMNQGKLEECKDFF-RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IG  167 (353)
Q Consensus        92 Dl~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~-~G  167 (353)
                      |++++..... ........+. .....+...+..+||||||+|||+|+|||++|+++||+||++++  ++|++||++ +|
T Consensus        85 DL~~~~~~~~-~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lG  163 (546)
T TIGR03222        85 NIFMLGLSTH-AWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLG  163 (546)
T ss_pred             CHHHHhcccc-chhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccC
Confidence            9998753210 0011111111 11233455677899999999999999999999999999999986  799999997 99


Q ss_pred             cccCccHHHHHh--hcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 018632          168 FHPDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL  223 (353)
Q Consensus       168 ~~p~~g~~~~l~--r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l  223 (353)
                      ++|++|++.+++  +.+|.. |++|++||+.++|+||+++||||+|||++++.+.+.++
T Consensus       164 l~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~l  222 (546)
T TIGR03222       164 VLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAER  222 (546)
T ss_pred             cCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHH
Confidence            999999998887  689998 99999999999999999999999999998887665555

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-36  Score=256.84  Aligned_cols=244  Identities=19%  Similarity=0.211  Sum_probs=215.0

Q ss_pred             ceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHH
Q 018632           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKD  110 (353)
Q Consensus        35 ~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~  110 (353)
                      ...++.+++|..|+||+|++.|.++..|+.+|.+.|..-.++.++++    ..|+.||+|.||+++.+.   ...+....
T Consensus        33 ~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e---~g~d~hae  109 (287)
T KOG1682|consen   33 LGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNE---PGSDIHAE  109 (287)
T ss_pred             ccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcC---ccchHHHH
Confidence            45566779999999999999999999999999999988887788777    789999999999999863   33455566


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHH
Q 018632          111 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  189 (353)
Q Consensus       111 ~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l  189 (353)
                      .+....+++.-|.++|+|||+-|||.+..+|+.|...||++||+++++|..|...+|++...-+. -|.|.+++. +.+|
T Consensus       110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~M  188 (287)
T KOG1682|consen  110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYM  188 (287)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHH
Confidence            77888899999999999999999999999999999999999999999999999999998665554 378999988 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHH
Q 018632          190 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  269 (353)
Q Consensus       190 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (353)
                      ++||.+++++||+..|||+++||.++++...+.                                               
T Consensus       189 L~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~-----------------------------------------------  221 (287)
T KOG1682|consen  189 LMTGLPITGEEALISGLVSKVVPAEELDKEIEE-----------------------------------------------  221 (287)
T ss_pred             HHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999999854443                                               


Q ss_pred             HHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 018632          270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL  349 (353)
Q Consensus       270 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~  349 (353)
                                          +...|...|...+...|+.+..+...+-.+++..-.+.....+.   -.|.+|||.+|++
T Consensus       222 --------------------i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~q---l~d~kegiasf~~  278 (287)
T KOG1682|consen  222 --------------------ITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQ---LGDTKEGIASFFE  278 (287)
T ss_pred             --------------------HHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc---ccchHHHHHHHhc
Confidence                                36777788888888999999888888888888888888777776   8999999999999


Q ss_pred             cCC
Q 018632          350 NKH  352 (353)
Q Consensus       350 ~~~  352 (353)
                      ||-
T Consensus       279 krp  281 (287)
T KOG1682|consen  279 KRP  281 (287)
T ss_pred             cCC
Confidence            984

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=6.3e-36  Score=298.88  Aligned_cols=193  Identities=14%  Similarity=0.165  Sum_probs=159.5

Q ss_pred             cCCCCceEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCccc----CC-CCCcccCcch
Q 018632           30 DDLCNQVLVEGKANSRMAILNRP-------S---ALNALNTNMGAKLNKLFKAWE-NDPNIGF----GS-GRAFCAGGDI   93 (353)
Q Consensus        30 ~~~~~~v~~~~~~~v~~I~lnrp-------~---~~Nal~~~~~~~L~~~l~~~~-~d~~v~v----g~-g~~F~aG~Dl   93 (353)
                      +..++.+.++.+++|++||||||       +   +.|+||.+|+.+|.++++.++ .|++|++    |. |++||+|+|+
T Consensus        11 ~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL   90 (550)
T PRK08184         11 PSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI   90 (550)
T ss_pred             CCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence            34566799999999999999965       4   899999999999999999999 7889887    75 5899999999


Q ss_pred             hhHHHhhhcCChHHHHHHHHH-HHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCc--eEEeccCCC-cccc
Q 018632           94 VSLYHFMNQGKLEECKDFFRT-LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IGFH  169 (353)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~-~G~~  169 (353)
                      +.+..... ........+... ...+...+..+||||||+|||+|+|||++|+++|||||++++  ++|++||++ +|++
T Consensus        91 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~  169 (550)
T PRK08184         91 FMLGGSSH-AWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL  169 (550)
T ss_pred             HhHhcccc-chhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence            98753210 000111111111 122445677899999999999999999999999999999987  899999997 9999


Q ss_pred             cCccHHHHHh--hcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 018632          170 PDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL  223 (353)
Q Consensus       170 p~~g~~~~l~--r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l  223 (353)
                      |++|++++++  +++|.. +.+|++||+.++|+||+++|||++++|++++.+.+.++
T Consensus       170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~  226 (550)
T PRK08184        170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAER  226 (550)
T ss_pred             CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHH
Confidence            9999999888  779998 99999999999999999999999999998887655444

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.73  E-value=6.1e-18  Score=147.23  Aligned_cols=139  Identities=17%  Similarity=0.085  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccc
Q 018632           61 NMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM  138 (353)
Q Consensus        61 ~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~  138 (353)
                      -.+.+|.++++.+.+|++|++  =.  .+|.|+|+....                .+.+++..+..++|||||+++|.|.
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~~vvl~--~~~~gg~~~~~~----------------~~~~~i~~~~~~~kpVia~v~G~a~   83 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVKAIVLR--VNSPGGSVTASE----------------VIRAELAAARAAGKPVVASGGGNAA   83 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEE--eeCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEECCchh
Confidence            356899999999999999987  11  168888875421                2334566677899999999999999


Q ss_pred             cccccccccCCeEEEeCceEEeccCCCcccccCccHHH--------HHhhcCh--HH-HHHHHhcCCCCCHHHHHHcCcc
Q 018632          139 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF--------YLSHLPG--HL-GEFLALTGAKLNGAEMMACGLA  207 (353)
Q Consensus       139 GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~--------~l~r~~g--~~-a~~l~ltG~~~~a~eA~~~Glv  207 (353)
                      |+|+.|+++||+++++++++|+.+.+..+..+......        .+++..|  .. ..+++..|..++|++|++.|||
T Consensus        84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV  163 (177)
T cd07014          84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV  163 (177)
T ss_pred             HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence            99999999999999999999999988776443322222        4444555  55 7889999999999999999999


Q ss_pred             ceecCCCChh
Q 018632          208 THYSVSEKLP  217 (353)
Q Consensus       208 ~~vv~~~~l~  217 (353)
                      |+|.+.+++.
T Consensus       164 D~v~~~~e~~  173 (177)
T cd07014         164 DSLGSFDDAV  173 (177)
T ss_pred             ccCCCHHHHH
Confidence            9999876654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.73  E-value=8.6e-18  Score=147.46  Aligned_cols=144  Identities=13%  Similarity=0.092  Sum_probs=110.0

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--ccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        45 ~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      ++|.++.     .++..+...+.+.|+.+..++.  |.+  .+     -|+++..                   ...++.
T Consensus         2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~~~~vvl~InS-----pGG~v~~-------------------~~~i~~   52 (187)
T cd07020           2 YVLEING-----AITPATADYLERAIDQAEEGGADALIIELDT-----PGGLLDS-------------------TREIVQ   52 (187)
T ss_pred             EEEEEee-----EEChHHHHHHHHHHHHHHhCCCCEEEEEEEC-----CCCCHHH-------------------HHHHHH
Confidence            5666653     3667778889999999887642  221  22     2233321                   113455


Q ss_pred             HHhhCCCcEEEEEc---cccccccccccccCCeEEEeCceEEeccCCCcccccCc--------------cHHHHHhhcCh
Q 018632          121 LLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDA--------------GASFYLSHLPG  183 (353)
Q Consensus       121 ~l~~~~kpvIaav~---G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~--------------g~~~~l~r~~g  183 (353)
                      .|..+|||||++|+   |+|.|+|+.|+++||++|++++++|+.+++..|..+..              +....+++..|
T Consensus        53 ~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G  132 (187)
T cd07020          53 AILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRG  132 (187)
T ss_pred             HHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            66789999999999   99999999999999999999999999999985544432              23456888888


Q ss_pred             H--H-HHHHHhcCCCCCHHHHHHcCccceecCCC-Chh
Q 018632          184 H--L-GEFLALTGAKLNGAEMMACGLATHYSVSE-KLP  217 (353)
Q Consensus       184 ~--~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~-~l~  217 (353)
                      .  . +.+++++|+.++++||+++||||+++++. ++.
T Consensus       133 ~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~  170 (187)
T cd07020         133 RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELL  170 (187)
T ss_pred             CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHH
Confidence            7  5 89999999999999999999999999875 443

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=99.53  E-value=2.5e-14  Score=115.70  Aligned_cols=93  Identities=39%  Similarity=0.721  Sum_probs=82.7

Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhh
Q 018632          254 HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS  333 (353)
Q Consensus       254 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~  333 (353)
                      .....|+.||+.+++++|++.|+..    ..+|+.++++.|.++||.|+++|.++++++...++.++++.|+++..+++.
T Consensus         4 ~~~~~I~~~F~~~s~~eI~~~L~~~----~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~   79 (118)
T PF13766_consen    4 EHLEAIDRCFSADSVEEIIEALEAD----GDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMR   79 (118)
T ss_dssp             HCHHHHHHHTTSSSHHHHHHHHHHH----S-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHcc----CcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc
Confidence            3467899999999999999999993    679999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCChhhhhhheeccCCC
Q 018632          334 RLISGDFYEVSNFQILNKHV  353 (353)
Q Consensus       334 ~~~~~d~~egi~afl~~~~~  353 (353)
                         .+||.|||+|.|+||++
T Consensus        80 ---~~DF~EGVRA~LIDKd~   96 (118)
T PF13766_consen   80 ---HPDFAEGVRALLIDKDK   96 (118)
T ss_dssp             ---CSCHHHHHHHHTTS---
T ss_pred             ---cchHHHHHHHHHhcCCC
Confidence               89999999999999874

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.46  E-value=1.3e-13  Score=117.89  Aligned_cols=125  Identities=14%  Similarity=0.148  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHhcCCCccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEcccc
Q 018632           61 NMGAKLNKLFKAWENDPNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVT  137 (353)
Q Consensus        61 ~~~~~L~~~l~~~~~d~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a  137 (353)
                      .+...+.+.|+.+..+..+.+   +.|+      ++..                   ...+...+..++||||+.++|.|
T Consensus        15 ~~~~~~~~~l~~~~~~~~i~l~inspGG------~~~~-------------------~~~i~~~i~~~~~pvi~~v~g~a   69 (160)
T cd07016          15 VTAKEFKDALDALGDDSDITVRINSPGG------DVFA-------------------GLAIYNALKRHKGKVTVKIDGLA   69 (160)
T ss_pred             cCHHHHHHHHHhccCCCCEEEEEECCCC------CHHH-------------------HHHHHHHHHhcCCCEEEEEcchH
Confidence            567788888888888766665   4443      2211                   12356667778999999999999


Q ss_pred             ccccccccccCCeEEEeCceEEeccCCCcccccCccH---------------HHHHhhcCh--HH-HHHHHhcCCCCCHH
Q 018632          138 MGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA---------------SFYLSHLPG--HL-GEFLALTGAKLNGA  199 (353)
Q Consensus       138 ~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~---------------~~~l~r~~g--~~-a~~l~ltG~~~~a~  199 (353)
                      .|+|+.++++||+|+++++++|+++....|..+....               ...+.+..|  .. ..+++.++..++++
T Consensus        70 ~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~  149 (160)
T cd07016          70 ASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQ  149 (160)
T ss_pred             HhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHH
Confidence            9999999999999999999999998877665544321               223667777  45 77777777889999


Q ss_pred             HHHHcCcccee
Q 018632          200 EMMACGLATHY  210 (353)
Q Consensus       200 eA~~~Glv~~v  210 (353)
                      ||+++||||+|
T Consensus       150 eA~~~GliD~v  160 (160)
T cd07016         150 EAVELGFADEI  160 (160)
T ss_pred             HHHHcCCCCcC
Confidence            99999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.46  E-value=9.4e-14  Score=124.20  Aligned_cols=87  Identities=20%  Similarity=0.187  Sum_probs=71.4

Q ss_pred             CHHHHHHHHHHHHHHhcCCCcccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccc
Q 018632           59 NTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM  138 (353)
Q Consensus        59 ~~~~~~~L~~~l~~~~~d~~v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~  138 (353)
                      +.-.+.+|.++|+.+..|++|++=-=..||.|+|+..+..                +.+.+..+..++|||||+++|.|.
T Consensus        19 ~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~----------------~~~~l~~~~~~~kpVia~v~g~a~   82 (211)
T cd07019          19 GNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEV----------------IRAELAAARAAGKPVVVSAGGAAA   82 (211)
T ss_pred             CccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHH----------------HHHHHHHHHhCCCCEEEEECCeeh
Confidence            4456899999999999999998700027899999976532                223456677889999999999999


Q ss_pred             cccccccccCCeEEEeCceEEec
Q 018632          139 GGGAGVSIPGTFRVACGKTVFAT  161 (353)
Q Consensus       139 GgG~~lal~cD~ria~~~a~f~~  161 (353)
                      |+|+.|+++||++++++++.|+.
T Consensus        83 s~gy~la~~aD~i~a~~~a~~gs  105 (211)
T cd07019          83 SGGYWISTPANYIVANPSTLTGS  105 (211)
T ss_pred             hHHHHHHHhCCEEEEcCCCEEEE
Confidence            99999999999999999998873

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.41  E-value=1e-12  Score=112.51  Aligned_cols=134  Identities=14%  Similarity=0.100  Sum_probs=97.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCcccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEcccc
Q 018632           58 LNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVT  137 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a  137 (353)
                      +++.++.+|.+.|+.++.|+.++.=.=...|.|+|+...                   ..+...+..++||||+.++|.|
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~-------------------~~i~~~l~~~~kpvva~~~g~~   68 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAG-------------------MNIVDALQASRKPVIAYVGGQA   68 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHH-------------------HHHHHHHHHhCCCEEEEECChh
Confidence            566889999999999999998775000113556665432                   2244566678899999999999


Q ss_pred             ccccccccccCCeEEEeCceEEeccCCCcccccCccHH------HHH----hh---------cChHH-HHHHHhcCCCCC
Q 018632          138 MGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS------FYL----SH---------LPGHL-GEFLALTGAKLN  197 (353)
Q Consensus       138 ~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~------~~l----~r---------~~g~~-a~~l~ltG~~~~  197 (353)
                      .++|+.|+++||.|++.+++.|++..+..+.....+-.      ..+    .+         ..... ..+++..|..++
T Consensus        69 ~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~  148 (161)
T cd00394          69 ASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLT  148 (161)
T ss_pred             HHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEc
Confidence            99999999999999999999999988876554322000      011    11         11222 466777899999


Q ss_pred             HHHHHHcCcccee
Q 018632          198 GAEMMACGLATHY  210 (353)
Q Consensus       198 a~eA~~~Glv~~v  210 (353)
                      ++||+++||||+|
T Consensus       149 a~eA~~~GLvD~i  161 (161)
T cd00394         149 AQEALEYGLVDAL  161 (161)
T ss_pred             HHHHHHcCCcCcC
Confidence            9999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.36  E-value=3.1e-12  Score=114.63  Aligned_cols=94  Identities=19%  Similarity=0.135  Sum_probs=69.0

Q ss_pred             cCCCCCCC-CCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCC
Q 018632           50 NRPSALNA-LNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL  126 (353)
Q Consensus        50 nrp~~~Na-l~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  126 (353)
                      ++|...|+ ++..++.+|.++|+.+..|++|++  =  +.+|.|+++...                ..+.+.+..+.. +
T Consensus        13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl--~~~s~gg~~~~~----------------~~l~~~l~~~~~-~   73 (214)
T cd07022          13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVL--DIDSPGGEVAGV----------------FELADAIRAARA-G   73 (214)
T ss_pred             CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEE--EEeCCCCcHHHH----------------HHHHHHHHHHhc-C
Confidence            35555565 457899999999999999999987  1  114456554322                112222333333 6


Q ss_pred             CcEEEEEccccccccccccccCCeEEEeCceEEecc
Q 018632          127 KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP  162 (353)
Q Consensus       127 kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~p  162 (353)
                      |||||+++|.|.|+|+.|+++||++++++++.|+..
T Consensus        74 KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i  109 (214)
T cd07022          74 KPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI  109 (214)
T ss_pred             CCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence            999999999999999999999999999999998654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.30  E-value=1e-11  Score=126.45  Aligned_cols=161  Identities=18%  Similarity=0.220  Sum_probs=113.5

Q ss_pred             EeCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHhcCCCccc------CC-CCCcccCcchhhHHHhhhcCChHHHHH
Q 018632           40 GKANSRMAILNRPSA--LNALNTNMGAKLNKLFKAWENDPNIGF------GS-GRAFCAGGDIVSLYHFMNQGKLEECKD  110 (353)
Q Consensus        40 ~~~~v~~I~lnrp~~--~Nal~~~~~~~L~~~l~~~~~d~~v~v------g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~  110 (353)
                      .++.|++|+++.+=.  .|..+....+.+.+.|+.+..|++|++      +. |..|++    ..               
T Consensus       306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----e~---------------  366 (584)
T TIGR00705       306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----EI---------------  366 (584)
T ss_pred             CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----HH---------------
Confidence            467899999986532  233333345678888999999999887      22 344443    11               


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEE------eccC------CCcccccCccHHHHH
Q 018632          111 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF------ATPE------TLIGFHPDAGASFYL  178 (353)
Q Consensus       111 ~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f------~~pe------~~~G~~p~~g~~~~l  178 (353)
                          +.+.+..+...+||||+.++|.|.+||..++++||.++|++.+.+      +.+.      .++|+.|+...+..+
T Consensus       367 ----i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~  442 (584)
T TIGR00705       367 ----IRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHEL  442 (584)
T ss_pred             ----HHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCc
Confidence                122334455678999999999999999999999999999999877      5553      578998876655433


Q ss_pred             hh----------------------------c------ChHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHH
Q 018632          179 SH----------------------------L------PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG  224 (353)
Q Consensus       179 ~r----------------------------~------~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~  224 (353)
                      ..                            .      +.....+.+.+|+.++++||+++||||++-   .++++.+.++
T Consensus       443 ~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~~~Ai~~a~  519 (584)
T TIGR00705       443 ANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GLDEAVAKAA  519 (584)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CHHHHHHHHH
Confidence            32                            2      222256788899999999999999999994   3444444333


Q ss_pred             hh
Q 018632          225 KL  226 (353)
Q Consensus       225 ~~  226 (353)
                      ++
T Consensus       520 ~l  521 (584)
T TIGR00705       520 KL  521 (584)
T ss_pred             HH
Confidence            33

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.24  E-value=4.6e-11  Score=106.65  Aligned_cols=100  Identities=19%  Similarity=0.144  Sum_probs=74.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHh
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLG  123 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  123 (353)
                      |++|.++-+=...  .+.++.+|.+.|+.+..|+++++=.=..+|.|+|+....                .+.+.+..+.
T Consensus         2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~----------------~i~~~i~~~~   63 (208)
T cd07023           2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASE----------------EIYREIRRLR   63 (208)
T ss_pred             EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHH----------------HHHHHHHHHH
Confidence            5666665431101  378999999999999999998870001147788875421                1233556677


Q ss_pred             hCCCcEEEEEccccccccccccccCCeEEEeCceEEec
Q 018632          124 THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT  161 (353)
Q Consensus       124 ~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~  161 (353)
                      .++|||||+++|.|.|+|+.|+++||.+++++.+.|+.
T Consensus        64 ~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~  101 (208)
T cd07023          64 KAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGS  101 (208)
T ss_pred             hcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence            78999999999999999999999999999999998864

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.13  E-value=3.5e-10  Score=98.19  Aligned_cols=135  Identities=16%  Similarity=0.243  Sum_probs=95.0

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--ccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHH
Q 018632           45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  119 (353)
Q Consensus        45 ~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  119 (353)
                      .+|.++.+     +++.+...+.+.|+.+.+++.  +.+   ..|      +++                   .....+.
T Consensus         2 ~vi~i~g~-----I~~~~~~~l~~~l~~a~~~~~~~ivl~inspG------G~v-------------------~~~~~I~   51 (178)
T cd07021           2 YVIPIEGE-----IDPGLAAFVERALKEAKEEGADAVVLDIDTPG------GRV-------------------DSALEIV   51 (178)
T ss_pred             EEEEEeeE-----ECHHHHHHHHHHHHHHHhCCCCeEEEEEECcC------CCH-------------------HHHHHHH
Confidence            45566533     667788889999999988752  222   222      222                   2223456


Q ss_pred             HHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccH--------HHH------HhhcChHH
Q 018632          120 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA--------SFY------LSHLPGHL  185 (353)
Q Consensus       120 ~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~--------~~~------l~r~~g~~  185 (353)
                      ..|..+++|||+.|+|.|.++|+.++++||++++++++.|+.+++    ++..|+        +..      +...-|+.
T Consensus        52 ~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~----v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~  127 (178)
T cd07021          52 DLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP----IPGDGNGAADEKVQSYWRAKMRAAAEKKGRD  127 (178)
T ss_pred             HHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee----EcCCCccchhHHHHHHHHHHHHHHHHHhCCC
Confidence            677789999999999999999999999999999999999998844    333332        111      22223432


Q ss_pred             ---HHHHHhcC-------------CCCCHHHHHHcCccceecCC
Q 018632          186 ---GEFLALTG-------------AKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       186 ---a~~l~ltG-------------~~~~a~eA~~~Glv~~vv~~  213 (353)
                         +..|+-..             -.++++||++.|++|.++++
T Consensus       128 ~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~  171 (178)
T cd07021         128 PDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS  171 (178)
T ss_pred             HHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence               45555544             27999999999999999864

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.12  E-value=2.4e-10  Score=101.86  Aligned_cols=148  Identities=17%  Similarity=0.135  Sum_probs=96.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL  122 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  122 (353)
                      |++|+++-+=     + ....+|.+.|+.+..|++|+. =- ...|.|+++...                   .++...|
T Consensus         2 v~vi~i~g~i-----~-~s~~~l~~~l~~a~~d~~i~~vvl-~~~s~Gg~~~~~-------------------~~l~~~i   55 (207)
T TIGR00706         2 IAILPVSGAI-----A-VSPEDFDKKIKRIKDDKSIKALLL-RINSPGGTVVAS-------------------EEIYEKL   55 (207)
T ss_pred             EEEEEEEEEE-----e-cCHHHHHHHHHHHhhCCCccEEEE-EecCCCCCHHHH-------------------HHHHHHH
Confidence            5666665442     1 335788999999999999886 00 113667766432                   2234445


Q ss_pred             hhCC--CcEEEEEccccccccccccccCCeEEEeCceEEeccCCC------------cccccC------------c--cH
Q 018632          123 GTHL--KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHPD------------A--GA  174 (353)
Q Consensus       123 ~~~~--kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~------------~G~~p~------------~--g~  174 (353)
                      ..++  |||||.++|.|.|+|+.|+++||.+++++++.++.-.+.            +|+-+.            .  ..
T Consensus        56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~  135 (207)
T TIGR00706        56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL  135 (207)
T ss_pred             HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence            5555  999999999999999999999999999999887653322            233210            0  00


Q ss_pred             H----HHHh-----------------hcChHHHHHHHhcCCCCCHHHHHHcCccceecCCCChh
Q 018632          175 S----FYLS-----------------HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLP  217 (353)
Q Consensus       175 ~----~~l~-----------------r~~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~  217 (353)
                      +    ..+.                 |-+.....+=++.|+.+++++|++.||||++...+++.
T Consensus       136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~  199 (207)
T TIGR00706       136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDAL  199 (207)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHH
Confidence            0    0111                 11122212234688999999999999999998655543

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.92  E-value=4.8e-09  Score=94.54  Aligned_cols=138  Identities=13%  Similarity=0.002  Sum_probs=95.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  133 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav  133 (353)
                      -+...+.+|.+.|+.+..|++|++    ..+..| ++.++.++.                   +.+..+...+|||||.+
T Consensus        26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~-------------------~~i~~~~~~~kpVia~~   85 (222)
T cd07018          26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR-------------------QALERFRASGKPVIAYA   85 (222)
T ss_pred             cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH-------------------HHHHHHHHhCCeEEEEe
Confidence            446778899999999999999998    444445 666665543                   23344555799999999


Q ss_pred             ccccccccccccccCCeEEEeCceEEeccCCC------------cccccC---------ccHHHH-----------Hhhc
Q 018632          134 NGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHPD---------AGASFY-----------LSHL  181 (353)
Q Consensus       134 ~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~------------~G~~p~---------~g~~~~-----------l~r~  181 (353)
                      +| |.++|+.|+++||.+++.+.+.|+...+.            +|+-+.         .+..+.           +..+
T Consensus        86 ~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~  164 (222)
T cd07018          86 DG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQAL  164 (222)
T ss_pred             CC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHH
Confidence            98 88999999999999999999999985332            222111         011110           0111


Q ss_pred             C-----------------hHHHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 018632          182 P-----------------GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL  216 (353)
Q Consensus       182 ~-----------------g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l  216 (353)
                      +                 .....+-+..|..+++++|++.||||++...+++
T Consensus       165 l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~  216 (222)
T cd07018         165 LDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDEL  216 (222)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHH
Confidence            1                 1111223455899999999999999999965554

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.57  E-value=5.6e-07  Score=77.47  Aligned_cols=131  Identities=11%  Similarity=0.203  Sum_probs=92.3

Q ss_pred             CCHHHHHHHHHHHHHHhcCCC--ccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDPN--IGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  132 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~--v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaa  132 (353)
                      +++.+...|.+.++.+.+++.  +.+   ..|      +.+..                   ...++..+...++||++.
T Consensus        10 I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPG------G~v~~-------------------~~~I~~~i~~~~~pvv~~   64 (172)
T cd07015          10 ITSYTYDQFDRYITIAEQDNAEAIIIELDTPG------GRADA-------------------AGNIVQRIQQSKIPVIIY   64 (172)
T ss_pred             ECHhHHHHHHHHHHHHhcCCCCeEEEEEECCC------CCHHH-------------------HHHHHHHHHhcCcCEEEE
Confidence            667788888899998876542  222   333      22221                   123445566789999999


Q ss_pred             Ec---cccccccccccccCCeEEEeCceEEeccCCCcccccC----c-c---HHHH------HhhcChH--H-HHHHHhc
Q 018632          133 LN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD----A-G---ASFY------LSHLPGH--L-GEFLALT  192 (353)
Q Consensus       133 v~---G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~----~-g---~~~~------l~r~~g~--~-a~~l~lt  192 (353)
                      |+   |.|..+|..++++||.+++.+++.++...+..|..+.    . .   .+..      +.+.-|+  . +..++-.
T Consensus        65 v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~  144 (172)
T cd07015          65 VYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITK  144 (172)
T ss_pred             EecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHh
Confidence            99   9999999999999999999999999988775443220    0 0   0111      1222343  2 6777778


Q ss_pred             CCCCCHHHHHHcCccceecCC
Q 018632          193 GAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       193 G~~~~a~eA~~~Glv~~vv~~  213 (353)
                      ...++++||+++|++|.|+.+
T Consensus       145 ~~~lta~EA~~~G~iD~ia~~  165 (172)
T cd07015         145 DLSLTPEEALKYGVIEVVARD  165 (172)
T ss_pred             hcCcCHHHHHHcCCceeeeCC
Confidence            888999999999999999975

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.44  E-value=8.3e-07  Score=78.64  Aligned_cols=132  Identities=17%  Similarity=0.110  Sum_probs=85.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC---Cccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEE
Q 018632           57 ALNTNMGAKLNKLFKAWENDP---NIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  130 (353)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~---~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvI  130 (353)
                      .++.++...+...|..++.++   .|.+   +.|      +|+..                   ...++..|...+.|++
T Consensus        39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~~-------------------g~~I~d~i~~~~~~v~   93 (200)
T PRK00277         39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVTA-------------------GLAIYDTMQFIKPDVS   93 (200)
T ss_pred             EECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHHH-------------------HHHHHHHHHhcCCCEE
Confidence            377889999999998887653   3444   333      23221                   1224455666788999


Q ss_pred             EEEccccccccccccccC--CeEEEeCceEEeccCCCcccccCccH---------------HHHHhhcChH--H-HHHHH
Q 018632          131 AILNGVTMGGGAGVSIPG--TFRVACGKTVFATPETLIGFHPDAGA---------------SFYLSHLPGH--L-GEFLA  190 (353)
Q Consensus       131 aav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~---------------~~~l~r~~g~--~-a~~l~  190 (353)
                      +.+.|.|.++|..+++++  +.|++.++++|.+....-|......-               ...+....|.  . ..+++
T Consensus        94 t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~  173 (200)
T PRK00277         94 TICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDT  173 (200)
T ss_pred             EEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            999999999999998874  35777777777665443221100000               0122333343  2 45566


Q ss_pred             hcCCCCCHHHHHHcCccceecCC
Q 018632          191 LTGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      -.+.-++|+||+++||||+|+..
T Consensus       174 ~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        174 DRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             hCCccccHHHHHHcCCccEEeec
Confidence            67788999999999999999965

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.41  E-value=1.2e-07  Score=88.94  Aligned_cols=165  Identities=19%  Similarity=0.051  Sum_probs=133.5

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHHHHHHHHHHHH
Q 018632           43 NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYS  117 (353)
Q Consensus        43 ~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  117 (353)
                      ++..+.++ |+ -|..|.++..+|..-|+.+..+..++.    +.. +.|++|.|..++...    .......++-++.+
T Consensus        66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg----~h~fspa~~m~LlE  139 (380)
T KOG1683|consen   66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVG----MHFFSPAHWMQLLE  139 (380)
T ss_pred             ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcc----ccccCHHHHHHHHH
Confidence            67888888 54 499999999999999999999988887    333 889999999988753    44455566778889


Q ss_pred             HHHHHhhCCCcEEEEEcccccccc--ccccccCCeEEEe--CceEEeccCCCcccccCccHHHHHhhcChHH-HHHHHhc
Q 018632          118 FIYLLGTHLKPHVAILNGVTMGGG--AGVSIPGTFRVAC--GKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALT  192 (353)
Q Consensus       118 l~~~l~~~~kpvIaav~G~a~GgG--~~lal~cD~ria~--~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~lt  192 (353)
                      ++....+++.|+.+++||++--||  +.++-+|+|++..  ..-..+..+...|+..+..-.-.+...+|.. +-.-+--
T Consensus       140 ii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d  219 (380)
T KOG1683|consen  140 IILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALAD  219 (380)
T ss_pred             HHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhh
Confidence            999999999999999999999898  8899999999998  4444467888877544333444455667776 5555667


Q ss_pred             CCCCCHHHHHHcCccceecCC
Q 018632          193 GAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       193 G~~~~a~eA~~~Glv~~vv~~  213 (353)
                      |.-++..||++-|+++.+.|.
T Consensus       220 ~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  220 GVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             ccCccHHHHHhhccchhccch
Confidence            888999999999999999986

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.38  E-value=3.6e-05  Score=70.50  Aligned_cols=135  Identities=16%  Similarity=0.118  Sum_probs=92.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCC--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           55 LNALNTNMGAKLNKLFKAWENDPN--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      .-+++++-+....+.++.+++..-  |.+ -.++++. |.+-.             .......+.+++..+...++|+|+
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~-g~~aE-------------~~G~~~~ia~~~~~~s~~~VP~Is  141 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYP-GVGAE-------------ERGQGEAIARNLMEMSDLKVPIIA  141 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCC-CHhHH-------------hccHHHHHHHHHHHHhCCCCCEEE
Confidence            456889999999999988876533  333 2223332 33211             011234455677778889999999


Q ss_pred             EEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH-H-HHHHHhcCCCCCHHHHHHcCccce
Q 018632          132 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-L-GEFLALTGAKLNGAEMMACGLATH  209 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~-~-a~~l~ltG~~~~a~eA~~~Glv~~  209 (353)
                      .|-|.|.|||......||++++.+++.++.-      .|.+ .+..+.+--.. . +.+.+    .+++.++.+.|+||.
T Consensus       142 VI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~------~pe~-~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~  210 (256)
T PRK12319        142 IIIGEGGSGGALALAVADQVWMLENTMYAVL------SPEG-FASILWKDGSRATEAAELM----KITAGELLEMGVVDK  210 (256)
T ss_pred             EEeCCcCcHHHHHhhcCCEEEEecCceEEEc------CHHH-HHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcE
Confidence            9999999998888889999999999887642      3443 44344332222 2 44443    789999999999999


Q ss_pred             ecCCC
Q 018632          210 YSVSE  214 (353)
Q Consensus       210 vv~~~  214 (353)
                      |+|..
T Consensus       211 ii~e~  215 (256)
T PRK12319        211 VIPEH  215 (256)
T ss_pred             ecCCC
Confidence            99854

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.38  E-value=1.9e-06  Score=73.82  Aligned_cols=126  Identities=13%  Similarity=0.096  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCcc---c---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDPNIG---F---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~---v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      ++..+..++...|..++.++.++   +   +.|+      ++.                   ....++..+...++||++
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG------~v~-------------------~~~~i~~~i~~~~~~v~~   63 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPGG------DVF-------------------AGMAIYDTIKFIKADVVT   63 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCC------cHH-------------------HHHHHHHHHHhcCCCceE
Confidence            56788899999999998875433   3   4442      221                   122355566678899999


Q ss_pred             EEccccccccccccccCC--eEEEeCceEEeccCCCcccccCccHH--H---------------HHhhcChH--H-HHHH
Q 018632          132 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS--F---------------YLSHLPGH--L-GEFL  189 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~~--~---------------~l~r~~g~--~-a~~l  189 (353)
                      .+.|.|.++|..++++||  .|++.++++|.+....-|..  +...  .               .+.+..|.  . ..++
T Consensus        64 ~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~--g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~  141 (162)
T cd07013          64 IIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTL--GDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHAD  141 (162)
T ss_pred             EEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            999999999999999999  68888888887654322211  1111  0               11112232  2 3455


Q ss_pred             HhcCCCCCHHHHHHcCcccee
Q 018632          190 ALTGAKLNGAEMMACGLATHY  210 (353)
Q Consensus       190 ~ltG~~~~a~eA~~~Glv~~v  210 (353)
                      +-.+.-++|+||+++||||++
T Consensus       142 ~~~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         142 LERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             HcCCccccHHHHHHcCCCCcC
Confidence            556666799999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.33  E-value=1.6e-05  Score=74.47  Aligned_cols=135  Identities=15%  Similarity=0.070  Sum_probs=92.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCC--Cccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           55 LNALNTNMGAKLNKLFKAWENDP--NIGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~--~v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      .-.++++-+....+.++.++...  -|.+ -.+++++ |.+-.+             ......+.+.+..+....+|+|+
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~Is  197 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPIIC  197 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEEE
Confidence            45688999999999999887653  3333 3333343 322211             11234455566677889999999


Q ss_pred             EEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH-H-HHHHHhcCCCCCHHHHHHcCccce
Q 018632          132 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-L-GEFLALTGAKLNGAEMMACGLATH  209 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~-~-a~~l~ltG~~~~a~eA~~~Glv~~  209 (353)
                      .|-|.|.|||......||++++.+++.++.-      .|.+.++ .|.+--.. . |.+    .-+++|++++++|+||+
T Consensus       198 VViGeggsGGAlal~~aD~V~m~e~a~~sVi------sPEg~a~-Il~~d~~~a~~aA~----~~~ita~dL~~~giiD~  266 (322)
T CHL00198        198 TIIGEGGSGGALGIGIGDSIMMLEYAVYTVA------TPEACAA-ILWKDSKKSLDAAE----ALKITSEDLKVLGIIDE  266 (322)
T ss_pred             EEeCcccHHHHHhhhcCCeEEEeCCeEEEec------CHHHHHH-HHhcchhhHHHHHH----HcCCCHHHHHhCCCCeE
Confidence            9999998888665566999999999988742      3444444 44443322 2 333    46899999999999999


Q ss_pred             ecCCC
Q 018632          210 YSVSE  214 (353)
Q Consensus       210 vv~~~  214 (353)
                      |+|..
T Consensus       267 ii~Ep  271 (322)
T CHL00198        267 IIPEP  271 (322)
T ss_pred             eccCC
Confidence            99843

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.25  E-value=3.7e-06  Score=74.91  Aligned_cols=129  Identities=16%  Similarity=0.097  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCC---Cccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDP---NIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~---~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      ++.++..++...|..++.++   .|.+   +.|      +++..                   ...++..|..++.||++
T Consensus        44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~~-------------------g~~I~d~i~~~~~~v~t   98 (207)
T PRK12553         44 VDDASANDVMAQLLVLESIDPDRDITLYINSPG------GSVTA-------------------GDAIYDTIQFIRPDVQT   98 (207)
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC------CcHHH-------------------HHHHHHHHHhcCCCcEE
Confidence            78899999999999988644   3444   333      33321                   12345566677889999


Q ss_pred             EEccccccccccccccCC--eEEEeCceEEeccCCCc-ccccCccH------------------HHHHhhcChH--H-HH
Q 018632          132 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLI-GFHPDAGA------------------SFYLSHLPGH--L-GE  187 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~-G~~p~~g~------------------~~~l~r~~g~--~-a~  187 (353)
                      .+.|.|.+.|..++++||  .|++.+++.|.+..... |.  ..|.                  ...+....|.  . ..
T Consensus        99 ~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~  176 (207)
T PRK12553         99 VCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR  176 (207)
T ss_pred             EEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            999999999999999999  59999999999977653 21  1111                  1123333343  2 56


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      +++-.+.-++|+||+++||||+|+++
T Consensus       177 ~~~~~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        177 KDTDRDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             HHHhcCccccHHHHHHcCCccEEcCc
Confidence            67777889999999999999999965

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.20  E-value=4.1e-05  Score=73.67  Aligned_cols=134  Identities=16%  Similarity=0.084  Sum_probs=90.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCC--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 018632           56 NALNTNMGAKLNKLFKAWENDPN--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  132 (353)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaa  132 (353)
                      .+++++-+......++.++...-  |.+ -.++++ .|.+..+             ......+.+.+..+....+|+|+.
T Consensus       200 G~~~peGyRKAlR~mklAekf~lPIVtLVDTpGA~-pG~~AEe-------------~Gqa~aIAr~l~ams~l~VPiISV  265 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKFGFPILTFVDTPGAY-AGIKAEE-------------LGQGEAIAFNLREMFGLRVPIIAT  265 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcC-CCHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEEE
Confidence            46889999999999998876533  333 222233 2222211             112344566777888999999999


Q ss_pred             EccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceec
Q 018632          133 LNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYS  211 (353)
Q Consensus       133 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv  211 (353)
                      |-|.+.+||.....+||++++.+++.++.-      .|.+.++.++....-.. +.+    .-.++|.++++.|+||.|+
T Consensus       266 ViGeGgSGGAlalg~aD~VlMle~A~ysVi------sPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II  335 (431)
T PLN03230        266 VIGEGGSGGALAIGCGNRMLMMENAVYYVA------SPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIV  335 (431)
T ss_pred             EeCCCCcHHHHHhhcCCEEEEecCCEEEec------CHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEec
Confidence            999996666555557899999999876642      34444444333322222 444    3389999999999999999


Q ss_pred             CC
Q 018632          212 VS  213 (353)
Q Consensus       212 ~~  213 (353)
                      |.
T Consensus       336 ~E  337 (431)
T PLN03230        336 PE  337 (431)
T ss_pred             cC
Confidence            75

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=98.20  E-value=3.4e-05  Score=78.68  Aligned_cols=134  Identities=13%  Similarity=0.031  Sum_probs=92.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcC--CCccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           55 LNALNTNMGAKLNKLFKAWEND--PNIGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d--~~v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      .-+++++-+....+.++.++..  |-|.+ -.+++++ |.+...             ......+.+.+..+....+|+|+
T Consensus       220 fG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpGA~p-G~~AEe-------------~Gq~~aIArnl~amasl~VP~IS  285 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEE-------------LGQGEAIAHNLRTMFGLKVPIVS  285 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCC-CchhHH-------------HhHHHHHHHHHHHHhCCCCCEEE
Confidence            4577888899999998888764  33443 2223332 322221             12234556677778889999999


Q ss_pred             EEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH-H-HHHHHhcCCCCCHHHHHHcCccce
Q 018632          132 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-L-GEFLALTGAKLNGAEMMACGLATH  209 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~-~-a~~l~ltG~~~~a~eA~~~Glv~~  209 (353)
                      .|-|.|.|||......||++++.+++.++.      +.|.++ +.++.+-... . |.+    .-.++|++++++|+||.
T Consensus       286 VViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEga-AsILwkd~~~A~eAAe----~lkiTa~dL~~lGiiD~  354 (762)
T PLN03229        286 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEAC-AAILWKSAKAAPKAAE----KLRITAQELCRLQIADG  354 (762)
T ss_pred             EEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHH-HHHHhcCcccHHHHHH----HcCCCHHHHHhCCCCee
Confidence            999999888888777899999999887654      234444 4444333322 2 433    46899999999999999


Q ss_pred             ecCC
Q 018632          210 YSVS  213 (353)
Q Consensus       210 vv~~  213 (353)
                      |+|.
T Consensus       355 IIpE  358 (762)
T PLN03229        355 IIPE  358 (762)
T ss_pred             eccC
Confidence            9984

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.17  E-value=5.2e-05  Score=71.13  Aligned_cols=135  Identities=14%  Similarity=0.044  Sum_probs=90.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCC--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           55 LNALNTNMGAKLNKLFKAWENDPN--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      .-+++++-+....+.++.++.-.-  |.+ -.+++++ |.+...             ......+.+++..+....+|+|+
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~-g~~aE~-------------~G~~~aia~~l~a~s~~~VP~Is  194 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLGVPVIC  194 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCC-CHHHHH-------------HHHHHHHHHHHHHHHcCCCCEEE
Confidence            356889999999999988876533  333 2222332 322211             11234456677778889999999


Q ss_pred             EEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcCh-HH-HHHHHhcCCCCCHHHHHHcCccce
Q 018632          132 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HL-GEFLALTGAKLNGAEMMACGLATH  209 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g-~~-a~~l~ltG~~~~a~eA~~~Glv~~  209 (353)
                      .|-|.|.|||......||++++.+++.++.       .++-|.+.++.+--. .. +.+.    ..+++.++++.|+||.
T Consensus       195 VViGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd~~~a~~aae~----~~~ta~~l~~~G~iD~  263 (316)
T TIGR00513       195 TVIGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKDASKAPKAAEA----MKITAPDLKELGLIDS  263 (316)
T ss_pred             EEecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccchhhHHHHHHH----ccCCHHHHHHCCCCeE
Confidence            999999888776556799999999987763       333344444443222 12 3332    6778999999999999


Q ss_pred             ecCCC
Q 018632          210 YSVSE  214 (353)
Q Consensus       210 vv~~~  214 (353)
                      |+|..
T Consensus       264 II~ep  268 (316)
T TIGR00513       264 IIPEP  268 (316)
T ss_pred             eccCC
Confidence            99843

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.15  E-value=6e-06  Score=71.34  Aligned_cols=128  Identities=16%  Similarity=0.107  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCC---ccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDPN---IGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~---v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      ++.++..++...+..+..++.   |.+   +.|+      |+..                   ...++..+...+.||++
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG------~v~~-------------------~~~i~~~l~~~~~~v~t   72 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGG------SVTA-------------------GLAIYDTMQYIKPPVST   72 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCC------CHHH-------------------HHHHHHHHHhcCCCEEE
Confidence            677888999999988887644   333   3333      3221                   11244455567899999


Q ss_pred             EEccccccccccccccCC--eEEEeCceEEeccCCCcccccCccH---------------HHHHhhcChH--H-HHHHHh
Q 018632          132 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGA---------------SFYLSHLPGH--L-GEFLAL  191 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~---------------~~~l~r~~g~--~-a~~l~l  191 (353)
                      .+.|.|.++|..+++++|  .|++.+++.|.+.+...+..-...-               ...+....|.  . ..+++-
T Consensus        73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~  152 (171)
T cd07017          73 ICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD  152 (171)
T ss_pred             EEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence            999999999999999999  7999999999998876554322100               0011112222  2 355666


Q ss_pred             cCCCCCHHHHHHcCcccee
Q 018632          192 TGAKLNGAEMMACGLATHY  210 (353)
Q Consensus       192 tG~~~~a~eA~~~Glv~~v  210 (353)
                      .+.-++|+||+++||+|+|
T Consensus       153 ~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         153 RDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             CCccccHHHHHHcCCCccC
Confidence            7788999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.14  E-value=5.2e-06  Score=72.44  Aligned_cols=134  Identities=16%  Similarity=0.151  Sum_probs=88.1

Q ss_pred             CCHHHHHHHHHHHHHHhc---CCCcccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEc
Q 018632           58 LNTNMGAKLNKLFKAWEN---DPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILN  134 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~---d~~v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~  134 (353)
                      +|.++...+...|..++.   ++.+.+-   .=|.|+|+..                   ...++..|..++.|+++.+.
T Consensus        25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~---INSpGG~v~~-------------------g~~i~~~i~~~~~~v~t~~~   82 (182)
T PF00574_consen   25 IDEESANRLISQLLYLENEDKNKPINIY---INSPGGDVDA-------------------GLAIYDAIRSSKAPVTTVVL   82 (182)
T ss_dssp             BSHHHHHHHHHHHHHHHHHTSSSEEEEE---EEECEBCHHH-------------------HHHHHHHHHHSSSEEEEEEE
T ss_pred             cCHHHHHHHHHHHHHHhccCCCceEEEE---EcCCCCccHH-------------------HHHHHHHHHhcCCCeEEEEe
Confidence            788999999988877742   3334440   0023344432                   22356677788999999999


Q ss_pred             cccccccccccccCCe--EEEeCceEEeccCCCcccccCccHHHH---------------HhhcChH--H-HHHHHhcCC
Q 018632          135 GVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY---------------LSHLPGH--L-GEFLALTGA  194 (353)
Q Consensus       135 G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~---------------l~r~~g~--~-a~~l~ltG~  194 (353)
                      |.|.+.|..++++||.  |++.+++.|.+.+...+..-.......               +....|.  . ..+++-...
T Consensus        83 G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~  162 (182)
T PF00574_consen   83 GLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDT  162 (182)
T ss_dssp             EEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTE
T ss_pred             CccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCc
Confidence            9999999999999999  899999999998887665431111111               1111121  1 234444445


Q ss_pred             CCCHHHHHHcCccceecCC
Q 018632          195 KLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       195 ~~~a~eA~~~Glv~~vv~~  213 (353)
                      -++|+||+++||||+|+.+
T Consensus       163 ~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  163 WLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             EEEHHHHHHHTSSSEEESS
T ss_pred             cccHHHHHHcCCCCEeccC
Confidence            5899999999999999854

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.12  E-value=9.4e-06  Score=71.64  Aligned_cols=131  Identities=16%  Similarity=0.138  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHHHHHHHhc-C--CCccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWEN-D--PNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~-d--~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      ++.++...+...|..++. +  ..|.+   +.|      +++..                   ...++..|...+.||++
T Consensus        32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~a-------------------g~aI~d~i~~~~~~V~t   86 (197)
T PRK14512         32 INKDLSELFQEKILLLEALDSKKPIFVYIDSEG------GDIDA-------------------GFAIFNMIRFVKPKVFT   86 (197)
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC------CCHHH-------------------HHHHHHHHHhCCCCEEE
Confidence            667888888888877775 3  33444   433      33321                   12355566678999999


Q ss_pred             EEccccccccccccccCCe--EEEeCceEEeccCCCcccccCccHH---------------HHHhhcChH--H-HHHHHh
Q 018632          132 ILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS---------------FYLSHLPGH--L-GEFLAL  191 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~---------------~~l~r~~g~--~-a~~l~l  191 (353)
                      .+.|.|.+.|..++++||-  |++.++++|.+....-|+.....-.               ..+....|.  . ..+++-
T Consensus        87 ~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~  166 (197)
T PRK14512         87 IGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTD  166 (197)
T ss_pred             EEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhh
Confidence            9999999999999999985  8999999987765543321111000               011222232  1 345555


Q ss_pred             cCCCCCHHHHHHcCccceecCC
Q 018632          192 TGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       192 tG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      ....++|+||+++||+|+|++.
T Consensus       167 ~d~~lta~EA~~yGliD~I~~~  188 (197)
T PRK14512        167 RDFWLDSSSAVKYGLVFEVVET  188 (197)
T ss_pred             cCcccCHHHHHHcCCccEeecC
Confidence            5677999999999999999975

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.09  E-value=7.6e-05  Score=70.11  Aligned_cols=135  Identities=13%  Similarity=0.062  Sum_probs=92.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCC--Cccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           55 LNALNTNMGAKLNKLFKAWENDP--NIGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~--~v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      .-+++++-+......++.++.-.  -|.+ -.+++++ |.+-.+             ....+.+.+++..+....+|+|+
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~-G~~aE~-------------~G~~~aia~~l~~~a~~~VP~Is  194 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLKVPIIC  194 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCC-CHHHHh-------------ccHHHHHHHHHHHHhCCCCCEEE
Confidence            45688999999999988887643  3333 3333333 332211             11234556677888899999999


Q ss_pred             EEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH-H-HHHHHhcCCCCCHHHHHHcCccce
Q 018632          132 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-L-GEFLALTGAKLNGAEMMACGLATH  209 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~-~-a~~l~ltG~~~~a~eA~~~Glv~~  209 (353)
                      .|-|.|.|||......||++++.+++.++       ++++-|.+..+.+-... . +.+    ...+++.++++.|+||.
T Consensus       195 VIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~~a~~aae----~~~ita~~l~~~g~iD~  263 (319)
T PRK05724        195 TVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDASKAPEAAE----AMKITAQDLKELGIIDE  263 (319)
T ss_pred             EEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCchhHHHHHH----HcCCCHHHHHHCCCceE
Confidence            99999988887655679999999888776       44444444455443322 1 333    45689999999999999


Q ss_pred             ecCCC
Q 018632          210 YSVSE  214 (353)
Q Consensus       210 vv~~~  214 (353)
                      |+|..
T Consensus       264 II~Ep  268 (319)
T PRK05724        264 IIPEP  268 (319)
T ss_pred             eccCC
Confidence            99743

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=98.08  E-value=3.3e-05  Score=68.23  Aligned_cols=132  Identities=12%  Similarity=0.090  Sum_probs=91.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCC---Cccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDP---NIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~---~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      +|.++..++...|-.++.++   .+.+   +.|      +|+..                   ...++..+...+.||..
T Consensus        39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG------G~v~~-------------------g~aIyd~m~~~~~~V~T   93 (200)
T CHL00028         39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG------GSVIS-------------------GLAIYDTMQFVKPDVHT   93 (200)
T ss_pred             ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC------cchhh-------------------HHHHHHHHHhcCCCEEE
Confidence            88999999999998887443   3333   443      22211                   12355667778999999


Q ss_pred             EEccccccccccccccCC--eEEEeCceEEeccCCCcccccCccH----------------HHHHhhcChHH---HHHHH
Q 018632          132 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGA----------------SFYLSHLPGHL---GEFLA  190 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~----------------~~~l~r~~g~~---a~~l~  190 (353)
                      .+.|.|.+.|..|++++|  .|++.++++|.+.....|..-+...                ...+....|..   ..+++
T Consensus        94 v~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~  173 (200)
T CHL00028         94 ICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDM  173 (200)
T ss_pred             EEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            999999999999999999  6999999999998766552211100                11112222321   34555


Q ss_pred             hcCCCCCHHHHHHcCccceecCCC
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSE  214 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~  214 (353)
                      -...-++|+||+++||||+|+.+.
T Consensus       174 ~r~~~lta~EA~eyGliD~I~~~~  197 (200)
T CHL00028        174 ERDVFMSATEAKAYGIVDLVAVNN  197 (200)
T ss_pred             hcCccCCHHHHHHcCCCcEEeecC
Confidence            566679999999999999999654

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.91  E-value=5.1e-05  Score=67.87  Aligned_cols=132  Identities=12%  Similarity=0.089  Sum_probs=89.6

Q ss_pred             CCCHHHHHHHHHHHHHHhc---CCCccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEE
Q 018632           57 ALNTNMGAKLNKLFKAWEN---DPNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  130 (353)
Q Consensus        57 al~~~~~~~L~~~l~~~~~---d~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvI  130 (353)
                      .+|..+.+.+...|..++.   +..+.+   +.|+...+|                         ..++..+...+-||.
T Consensus        62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aG-------------------------laIyd~m~~~~~~V~  116 (221)
T PRK14514         62 QIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAG-------------------------LGIYDTMQFISSDVA  116 (221)
T ss_pred             EEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhH-------------------------HHHHHHHHhcCCCEE
Confidence            3788888888887766654   334554   444332222                         124556677889999


Q ss_pred             EEEccccccccccccccCCe--EEEeCceEEeccCCCcccccCccHHH---------------HHhhcChHH---HHHHH
Q 018632          131 AILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGHL---GEFLA  190 (353)
Q Consensus       131 aav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~---------------~l~r~~g~~---a~~l~  190 (353)
                      ..+-|.|.+.|..|++++|.  |++.++++|.+....-|......-..               .+....|..   ..+++
T Consensus       117 tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~  196 (221)
T PRK14514        117 TICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADS  196 (221)
T ss_pred             EEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            99999999999999999996  89999999998776544321111000               111222321   34555


Q ss_pred             hcCCCCCHHHHHHcCccceecCC
Q 018632          191 LTGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      -...-++|+||+++||||+|+..
T Consensus       197 ~rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        197 DRDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             hcCccCCHHHHHHcCCccEEeec
Confidence            56667999999999999999864

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=97.91  E-value=9.5e-05  Score=65.01  Aligned_cols=130  Identities=16%  Similarity=0.082  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCC---Cccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDP---NIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~---~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      ++.++..++...|..++.++   .+.+   +.      |+|+..                   ...++..+..++.||..
T Consensus        35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp------GG~v~~-------------------g~~I~d~l~~~~~~v~t   89 (191)
T TIGR00493        35 VNDSVANLIVAQLLFLEAEDPEKDIYLYINSP------GGSITA-------------------GLAIYDTMQFIKPDVST   89 (191)
T ss_pred             EChHHHHHHHHHHHHhhccCCCCCEEEEEECC------CCCHHH-------------------HHHHHHHHHhcCCCEEE
Confidence            67778888888888887644   2333   33      333321                   12244455666778888


Q ss_pred             EEccccccccccccccCC--eEEEeCceEEeccCCCcccccCccHH---------------HHHhhcChH--H-HHHHHh
Q 018632          132 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS---------------FYLSHLPGH--L-GEFLAL  191 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~~---------------~~l~r~~g~--~-a~~l~l  191 (353)
                      .+.|.|.+.|..+++++|  .|++.++++|.+.+..-|......-.               ..+....|.  . ..+++-
T Consensus        90 ~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~  169 (191)
T TIGR00493        90 ICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTE  169 (191)
T ss_pred             EEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence            888999999988888655  69999999999977653332111111               112233343  2 456667


Q ss_pred             cCCCCCHHHHHHcCccceecC
Q 018632          192 TGAKLNGAEMMACGLATHYSV  212 (353)
Q Consensus       192 tG~~~~a~eA~~~Glv~~vv~  212 (353)
                      .+.-++|+||+++||+|+|+.
T Consensus       170 ~~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       170 RDFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             CCccCcHHHHHHcCCccEEec
Confidence            778899999999999999975

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK10949 protease 4; Provisional

Probab=97.89  E-value=7.6e-05  Score=76.71  Aligned_cols=150  Identities=16%  Similarity=0.164  Sum_probs=92.8

Q ss_pred             eCCEEEEEEcC-----CCCCCCCCHHHHHHHHHHHHHHhcCCCccc------CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           41 KANSRMAILNR-----PSALNALNTNMGAKLNKLFKAWENDPNIGF------GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        41 ~~~v~~I~lnr-----p~~~Nal~~~~~~~L~~~l~~~~~d~~v~v------g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      .+.|++|.++-     +...+.++.   +.+.+.|+.+..|++|++      +.|+.      .            ..  
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSpGGs------~------------~a--  381 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSPGGS------V------------TA--  381 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCCCCc------H------------HH--
Confidence            46688887752     222233444   467778899999999987      33321      1            00  


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCC------------CcccccCccHH--
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDAGAS--  175 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~G~~p~~g~~--  175 (353)
                        .+.+.+.+..+....||||+.+.|.|.-||.-++++||.++|.+.+..+--.+            ++|+-+....+  
T Consensus       382 --se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~  459 (618)
T PRK10949        382 --SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSP  459 (618)
T ss_pred             --HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccc
Confidence              12222333444567899999999999999999999999999999665443221            13332211100  


Q ss_pred             ---------------HHHhhc-----------------ChHHHHHHHhcCCCCCHHHHHHcCccceecCCCC
Q 018632          176 ---------------FYLSHL-----------------PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEK  215 (353)
Q Consensus       176 ---------------~~l~r~-----------------~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~  215 (353)
                                     ..+...                 +...-.+-+..|+.+++++|++.||||++-.-++
T Consensus       460 ~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~  531 (618)
T PRK10949        460 LADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDD  531 (618)
T ss_pred             cCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHH
Confidence                           001111                 1111123356899999999999999999975433

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.88  E-value=0.00011  Score=64.96  Aligned_cols=132  Identities=14%  Similarity=0.123  Sum_probs=92.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcC---CCccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEE
Q 018632           57 ALNTNMGAKLNKLFKAWEND---PNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  130 (353)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d---~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvI  130 (353)
                      .++.++-+.+...|-.++.+   ..+.+   +.|      +|+..                   ...++..|...+-||.
T Consensus        35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG------G~v~~-------------------GlaIyd~m~~~~~~V~   89 (201)
T PRK14513         35 PIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG------GEVYA-------------------GLAIYDTMRYIKAPVS   89 (201)
T ss_pred             EEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------Cchhh-------------------HHHHHHHHHhcCCCEE
Confidence            48888988888888777753   24554   444      33321                   1235566777889999


Q ss_pred             EEEccccccccccccccCCe--EEEeCceEEeccCCCcccccCccHHHH-----------------HhhcChHH---HHH
Q 018632          131 AILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGHL---GEF  188 (353)
Q Consensus       131 aav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~-----------------l~r~~g~~---a~~  188 (353)
                      ..+.|.|.+.|..|++++|-  |++.+++++-+.....|..  +-...+                 +.+..|..   -.+
T Consensus        90 Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~  167 (201)
T PRK14513         90 TICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLR  167 (201)
T ss_pred             EEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            99999999999999999996  9999999999987765531  111111                 12222321   344


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCC
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEK  215 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~  215 (353)
                      ++-...-++|+||+++||||+|+++..
T Consensus       168 ~~~rd~~msa~EA~eyGliD~I~~~~~  194 (201)
T PRK14513        168 DMERDYFMSPEEAKAYGLIDSVIEPTR  194 (201)
T ss_pred             HhccCcccCHHHHHHcCCCcEEeccCC
Confidence            455556699999999999999997654

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=97.82  E-value=0.0021  Score=58.34  Aligned_cols=152  Identities=13%  Similarity=0.014  Sum_probs=90.0

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHH
Q 018632           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAW-ENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  115 (353)
Q Consensus        41 ~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~-~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~  115 (353)
                      +|.-..|.=|.|..  .++.+-...+...+... +.+..+-+    -.+ .|-.|..             ++.....+.+
T Consensus        30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp-G~~~g~~-------------aE~~G~~~a~   93 (238)
T TIGR03134        30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP-SQAYGRR-------------EELLGINQAL   93 (238)
T ss_pred             CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC-CCCCCHH-------------HHHHHHHHHH
Confidence            34444444566643  78877777777777774 44444332    222 1222221             2222233344


Q ss_pred             HHHHHHHh---hCCCcEEEEEcccccccccc-ccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHHh
Q 018632          116 YSFIYLLG---THLKPHVAILNGVTMGGGAG-VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLAL  191 (353)
Q Consensus       116 ~~l~~~l~---~~~kpvIaav~G~a~GgG~~-lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~l  191 (353)
                      .++...+.   ..+.|+|+.|-|.++|||+. +.+.+|.++|.+++.+       +..++-+++..+.+-... ..++.-
T Consensus        94 A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i-------~vm~~e~aa~I~~~~~~~-~~e~a~  165 (238)
T TIGR03134        94 AHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMV-------HVMDLESMARVTKRSVEE-LEALAK  165 (238)
T ss_pred             HHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEE-------EecCHHHHHHHHccCHhH-HHHHHH
Confidence            44445554   45699999999999998765 5556888877766554       555555555555444432 222221


Q ss_pred             c--CCCCCHHHHHHcCccceecCCCCh
Q 018632          192 T--GAKLNGAEMMACGLATHYSVSEKL  216 (353)
Q Consensus       192 t--G~~~~a~eA~~~Glv~~vv~~~~l  216 (353)
                      +  -...+++.+.++|+||.|+++.+-
T Consensus       166 ~~~~~a~~~~~~~~~G~vd~vi~~~~~  192 (238)
T TIGR03134       166 SSPVFAPGIENFVKLGGVHALLDVADA  192 (238)
T ss_pred             hhhhhccCHHHHHhCCCccEEeCCCCc
Confidence            1  134677889999999999987654

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.70  E-value=0.00033  Score=61.71  Aligned_cols=133  Identities=14%  Similarity=0.077  Sum_probs=90.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC---Cccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEE
Q 018632           57 ALNTNMGAKLNKLFKAWENDP---NIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  130 (353)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~---~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvI  130 (353)
                      .+|.++..++...|..++.++   .+.+   +.|+..-+|                         ..++..+...+.||.
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g-------------------------~aIyd~m~~~~~~V~   87 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDG-------------------------LGIFDTMQHVKPDVH   87 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhH-------------------------HHHHHHHHhcCCCEE
Confidence            388999999999998887533   3444   444222222                         235556667888999


Q ss_pred             EEEccccccccccccccCCe--EEEeCceEEeccCCCcccccCccHHH---------------HHhhcChHH---HHHHH
Q 018632          131 AILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLPGHL---GEFLA  190 (353)
Q Consensus       131 aav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~---------------~l~r~~g~~---a~~l~  190 (353)
                      ..+.|.|.+.|..|++++|-  |++.+++++.+....-|..-...-..               .+....|..   ..+++
T Consensus        88 t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~  167 (196)
T PRK12551         88 TVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDT  167 (196)
T ss_pred             EEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            99999999999999999985  88999999998776433211110000               111222321   34455


Q ss_pred             hcCCCCCHHHHHHcCccceecCCC
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSE  214 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~  214 (353)
                      -...-++|+||+++||+|+|++..
T Consensus       168 ~rd~~msa~EA~eyGliD~I~~~~  191 (196)
T PRK12551        168 DRDFFMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             hcCcCCCHHHHHHcCCCcEEeccC
Confidence            555669999999999999999764

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.66  E-value=0.00094  Score=61.66  Aligned_cols=146  Identities=12%  Similarity=0.061  Sum_probs=91.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC-------CCccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWEND-------PNIGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  115 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d-------~~v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~  115 (353)
                      |+++-.+..-..-++....-..+..+++.+.+|       |-|.+ -     |+|+.+.+-.        .....+.+ .
T Consensus        61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~d-----SgGaRlqEg~--------~~L~~~a~-i  126 (274)
T TIGR03133        61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLD-----TGGVRLQEAN--------AGLIAIAE-I  126 (274)
T ss_pred             EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEc-----CCCcChhhhH--------HHHHHHHH-H
Confidence            555555555566788888889999999988762       22322 2     2233332211        11111111 1


Q ss_pred             HHHHHHHhhCCCcEEEEEccc--cccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH--H-HHHHH
Q 018632          116 YSFIYLLGTHLKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFLA  190 (353)
Q Consensus       116 ~~l~~~l~~~~kpvIaav~G~--a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~--~-a~~l~  190 (353)
                      ...+..+... +|+|+.+-|+  |+||+..++..||++|+++++++++.           +...+....|.  . ..+--
T Consensus       127 ~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~  194 (274)
T TIGR03133       127 MRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA  194 (274)
T ss_pred             HHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhc
Confidence            2222333344 9999999999  89999999999999999999887763           12223333442  1 44444


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCC
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEK  215 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~  215 (353)
                      |..+.+.+......|++|.+++++.
T Consensus       195 l~~~~lGG~~~~~sG~~D~~v~dd~  219 (274)
T TIGR03133       195 LVWRTTGGKHRFLSGDADVLVEDDV  219 (274)
T ss_pred             ccccccchHhHhhcccceEEeCCHH
Confidence            4555666677888999999998754

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK11778 putative inner membrane peptidase; Provisional

Probab=97.53  E-value=0.00038  Score=65.92  Aligned_cols=151  Identities=12%  Similarity=0.073  Sum_probs=90.3

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc---CCCC-CcccCcchhhHHHhhhcCChHHHHHHHHHHH
Q 018632           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF---GSGR-AFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  116 (353)
Q Consensus        41 ~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v---g~g~-~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~  116 (353)
                      .+.|++|.|+.+=..+ -...+..++...+..+..++.|.+   +.|+ ...+|.                       ..
T Consensus        89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~-----------------------a~  144 (330)
T PRK11778         89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGL-----------------------AA  144 (330)
T ss_pred             CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHH-----------------------HH
Confidence            4678888887542111 112344666666666665554444   3332 121110                       00


Q ss_pred             HHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccH----------------------
Q 018632          117 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA----------------------  174 (353)
Q Consensus       117 ~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~----------------------  174 (353)
                      ..+.++....||+|+.+++.|.-||..++++||-+++.+.+.++.-.+... .|....                      
T Consensus       145 ~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~  223 (330)
T PRK11778        145 SQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLT  223 (330)
T ss_pred             HHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCC
Confidence            113345567899999999999999999999999999999888775433211 111100                      


Q ss_pred             -----H----HHHhhcCh-------------H--HHHHHHhcCCCCCHHHHHHcCccceecCCCCh
Q 018632          175 -----S----FYLSHLPG-------------H--LGEFLALTGAKLNGAEMMACGLATHYSVSEKL  216 (353)
Q Consensus       175 -----~----~~l~r~~g-------------~--~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l  216 (353)
                           +    ..+...+.             +  .-.+-+.+|+.+++++|++.||||++...+++
T Consensus       224 pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~  289 (330)
T PRK11778        224 LFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY  289 (330)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence                 0    00111111             0  11234568999999999999999999876554

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.50  E-value=0.0016  Score=59.37  Aligned_cols=112  Identities=14%  Similarity=0.147  Sum_probs=81.5

Q ss_pred             EEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHH
Q 018632           38 VEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYS  117 (353)
Q Consensus        38 ~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~  117 (353)
                      +++++.+..+.+  |- .+-++.+...++.++++....+..+-+=   .-+-|+++.                   ...+
T Consensus        55 Ihrqe~~~~~gi--Pi-~~~I~i~dse~v~raI~~~~~~~~IdLi---i~TpGG~v~-------------------AA~~  109 (285)
T PF01972_consen   55 IHRQERVSFLGI--PI-YRYIDIDDSEFVLRAIREAPKDKPIDLI---IHTPGGLVD-------------------AAEQ  109 (285)
T ss_pred             EEeccccceecc--cc-ceeEcHhhHHHHHHHHHhcCCCCceEEE---EECCCCcHH-------------------HHHH
Confidence            334444444444  42 3668889999999999888776655440   001222221                   1223


Q ss_pred             HHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccH
Q 018632          118 FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA  174 (353)
Q Consensus       118 l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~  174 (353)
                      +...+..++.|+++.|...|+-+|..+|++||-+++.+.+.+|.-+.++|-.|..+.
T Consensus       110 I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~si  166 (285)
T PF01972_consen  110 IARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASI  166 (285)
T ss_pred             HHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHH
Confidence            556677899999999999999999999999999999999999999999998886543

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.46  E-value=0.0012  Score=61.64  Aligned_cols=146  Identities=14%  Similarity=0.113  Sum_probs=86.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-----C--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDP-----N--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  115 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~-----~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~  115 (353)
                      |+++-.+..-..-++.......+..+++.+.++.     -  |.+ -.     +|+.+.+-.        .....+.+ .
T Consensus        70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS-----GGaRlqEg~--------~~L~~~a~-i  135 (301)
T PRK07189         70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFET-----GGVRLQEAN--------AGLAAIAE-I  135 (301)
T ss_pred             EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-----CCcCccchH--------HHHHHHHH-H
Confidence            5555556555678899999999999999987655     2  222 21     223332110        01111111 1


Q ss_pred             HHHHHHHhhCCCcEEEEEccc--cccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH--H-HHHHH
Q 018632          116 YSFIYLLGTHLKPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFLA  190 (353)
Q Consensus       116 ~~l~~~l~~~~kpvIaav~G~--a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~--~-a~~l~  190 (353)
                      ...+..+... +|+|+.+-|+  |+||+...+.+||++|+++++++++.           +...+....|.  - ..+.-
T Consensus       136 ~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla-----------GP~VIe~~~G~e~~d~~d~~  203 (301)
T PRK07189        136 MRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA  203 (301)
T ss_pred             HHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc-----------CHHHHHHhcCCcccCHHHhc
Confidence            2222333344 9999999999  99999999999999999999887763           12222222331  1 33323


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCC
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEK  215 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~  215 (353)
                      +..+.+.+......|.+|.+++++.
T Consensus       204 ~vw~~lGG~h~~~sG~~D~~v~dd~  228 (301)
T PRK07189        204 LVWRTTGGKHRYLSGLADALVDDDV  228 (301)
T ss_pred             ccccccCcceeeecccceEEeCCHH
Confidence            3222222334456899999998754

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=97.37  E-value=0.0023  Score=57.27  Aligned_cols=139  Identities=19%  Similarity=0.108  Sum_probs=89.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC---Cccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEE
Q 018632           57 ALNTNMGAKLNKLFKAWENDP---NIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  130 (353)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~---~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvI  130 (353)
                      ..+.++.+.+...|-.++.++   .|.+   +.|+...+|-=+...                .....++..+...+-||.
T Consensus        48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v----------------~~glaIyD~m~~ik~~V~  111 (222)
T PRK12552         48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE----------------TEAFAICDTMRYIKPPVH  111 (222)
T ss_pred             chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc----------------ccHHHHHHHHHhcCCCeE
Confidence            344558888888877776543   4555   666555555111100                111235566667788999


Q ss_pred             EEEccccccccccccccCCe--EEEeCceEEeccCCCcccccCccHHHH-----------------HhhcChHH---HHH
Q 018632          131 AILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGHL---GEF  188 (353)
Q Consensus       131 aav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~-----------------l~r~~g~~---a~~  188 (353)
                      ..+-|.|.+.|..|++++|-  |++.+++++-+.....|..  +-.+-+                 +....|..   -.+
T Consensus       112 Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~  189 (222)
T PRK12552        112 TICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSK  189 (222)
T ss_pred             EEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999995  8999999999877654432  111111                 11111211   122


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCC
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      ++-...-++|+||+++||||+|+.+
T Consensus       190 d~~rd~wmsA~EA~eyGliD~Ii~~  214 (222)
T PRK12552        190 DTDRMFYLTPQEAKEYGLIDRVLES  214 (222)
T ss_pred             HhcCCCcCCHHHHHHcCCCcEEecc
Confidence            3333345999999999999999965

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.32  E-value=0.0049  Score=57.62  Aligned_cols=147  Identities=14%  Similarity=0.148  Sum_probs=89.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      |+++-.+-.-..-+++....+.+..+++.+....-  |.+ ..|     |+.+.+       + ......+ ......+.
T Consensus       123 V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsg-----GarmqE-------g-i~sL~~~-ak~~~a~~  188 (292)
T PRK05654        123 VVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSASG-----GARMQE-------G-LLSLMQM-AKTSAALK  188 (292)
T ss_pred             EEEEEEecccccCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCC-----Ccchhh-------h-hhHHHhH-HHHHHHHH
Confidence            34333443336788999999999999999877633  333 222     222211       1 0111111 22223344


Q ss_pred             HHhhCCCcEEEEEcccccccccc-ccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018632          121 LLGTHLKPHVAILNGVTMGGGAG-VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  199 (353)
Q Consensus       121 ~l~~~~kpvIaav~G~a~GgG~~-lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  199 (353)
                      ++....+|.|+.+-|+|+||+.. .++.+|++|+.++|.+++-..           ..+...+|.   ++  .-+.-+++
T Consensus       189 ~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp-----------rvie~~~~e---~l--pe~~~~ae  252 (292)
T PRK05654        189 RLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGP-----------RVIEQTVRE---KL--PEGFQRAE  252 (292)
T ss_pred             HHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCH-----------HHHHhhhhh---hh--hhhhcCHH
Confidence            45567899999999999999655 577899999999887776322           111111221   11  11223567


Q ss_pred             HHHHcCccceecCCCChhHHH
Q 018632          200 EMMACGLATHYSVSEKLPLIE  220 (353)
Q Consensus       200 eA~~~Glv~~vv~~~~l~~~~  220 (353)
                      -+.+.|+||.|+++.++....
T Consensus       253 ~~~~~G~vD~Vv~~~e~r~~l  273 (292)
T PRK05654        253 FLLEHGAIDMIVHRRELRDTL  273 (292)
T ss_pred             HHHhCCCCcEEECHHHHHHHH
Confidence            778999999999998876533

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.23  E-value=0.0072  Score=56.31  Aligned_cols=147  Identities=13%  Similarity=0.131  Sum_probs=90.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      |+++..|-.-..-+++....+.+..+++.+.+..-  |.+ ..|+     +-+.+       + ......+ ......+.
T Consensus       122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgG-----aRmqE-------g-~~sL~~~-ak~~~~~~  187 (285)
T TIGR00515       122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGG-----ARMQE-------A-LLSLMQM-AKTSAALA  187 (285)
T ss_pred             EEEEEEeccccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCC-----ccccc-------c-hhHHHhH-HHHHHHHH
Confidence            44444554446788999999999999999876533  333 2222     21111       1 1111111 12222334


Q ss_pred             HHhhCCCcEEEEEcccccccccc-ccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018632          121 LLGTHLKPHVAILNGVTMGGGAG-VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  199 (353)
Q Consensus       121 ~l~~~~kpvIaav~G~a~GgG~~-lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  199 (353)
                      ++....+|.|+.+-|+|+||+.. .++.+|++|+.++|.+++-...           .+...+|..     +.-+.-+|+
T Consensus       188 ~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e~-----lpe~~q~ae  251 (285)
T TIGR00515       188 KMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVREK-----LPEGFQTSE  251 (285)
T ss_pred             HHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcCc-----cchhcCCHH
Confidence            45667899999999999999655 5679999999999888774221           112222211     111233566


Q ss_pred             HHHHcCccceecCCCChhHHH
Q 018632          200 EMMACGLATHYSVSEKLPLIE  220 (353)
Q Consensus       200 eA~~~Glv~~vv~~~~l~~~~  220 (353)
                      -+.+.|+||.|+++.++....
T Consensus       252 ~~~~~G~vD~iv~~~~~r~~l  272 (285)
T TIGR00515       252 FLLEHGAIDMIVHRPEMKKTL  272 (285)
T ss_pred             HHHhCCCCcEEECcHHHHHHH
Confidence            688999999999998876533

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.0025  Score=61.89  Aligned_cols=145  Identities=10%  Similarity=0.128  Sum_probs=105.1

Q ss_pred             EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-Cccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHH
Q 018632           40 GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDP-NIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  115 (353)
Q Consensus        40 ~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~-~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~  115 (353)
                      -++.|.+|.++.     .+++.+.+.+.+.++.++++. +..+   -.++.                        +.+.+
T Consensus        24 ~~~~v~vi~i~g-----~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGG------------------------l~~sm   74 (436)
T COG1030          24 AEKKVYVIEIDG-----AIDPASADYLQRALQSAEEENAAAVVLELDTPGG------------------------LLDSM   74 (436)
T ss_pred             cCCeEEEEEecC-----ccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCc------------------------hHHHH
Confidence            345677777754     599999999999999999876 3333   22211                        23556


Q ss_pred             HHHHHHHhhCCCcEEEEEc---cccccccccccccCCeEEEeCceEEeccCCCccc---ccCcc-HHHH------HhhcC
Q 018632          116 YSFIYLLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF---HPDAG-ASFY------LSHLP  182 (353)
Q Consensus       116 ~~l~~~l~~~~kpvIaav~---G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~---~p~~g-~~~~------l~r~~  182 (353)
                      .++..++.+.+.|||..|.   +.|.-+|.-++++||+..+.+.+.++--..-.+-   .+... ....      +.+.-
T Consensus        75 ~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~  154 (436)
T COG1030          75 RQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEER  154 (436)
T ss_pred             HHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHc
Confidence            6788899999999999884   4699999999999999999999998875544322   11111 1122      22233


Q ss_pred             hH--H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 018632          183 GH--L-GEFLALTGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       183 g~--~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      |+  . |.+++.....++++||++.|++|-+..+
T Consensus       155 gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~  188 (436)
T COG1030         155 GRNPTWAERFVTENLSLTAEEALRQGVIDLIARD  188 (436)
T ss_pred             CCChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence            43  2 7889999999999999999999988754

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.16  E-value=0.0024  Score=60.72  Aligned_cols=77  Identities=18%  Similarity=0.276  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhcCCCccc------CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccc
Q 018632           63 GAKLNKLFKAWENDPNIGF------GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGV  136 (353)
Q Consensus        63 ~~~L~~~l~~~~~d~~v~v------g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~  136 (353)
                      .+.+.+.|+.+..|+.++.      +.|+.-.+                      ...+.+.+..+..-. ||++.|++.
T Consensus        82 ~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~a----------------------s~~i~~~l~~l~~~~-PV~v~v~~~  138 (317)
T COG0616          82 GDDIEEILRAARADPSVKAVVLRINSPGGSVVA----------------------SELIARALKRLRAKK-PVVVSVGGY  138 (317)
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEEECcCCchhH----------------------HHHHHHHHHHHhhcC-CEEEEECCe
Confidence            4556666777778887775      33321111                      122233344444444 999999999


Q ss_pred             cccccccccccCCeEEEeCceEEecc
Q 018632          137 TMGGGAGVSIPGTFRVACGKTVFATP  162 (353)
Q Consensus       137 a~GgG~~lal~cD~ria~~~a~f~~p  162 (353)
                      |.-||..++++||.+||++.+..|--
T Consensus       139 AASGGY~IA~aAd~I~a~p~si~GSI  164 (317)
T COG0616         139 AASGGYYIALAADKIVADPSSITGSI  164 (317)
T ss_pred             ecchhhhhhccCCEEEecCCceeeec
Confidence            99999999999999999998887753

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=96.98  E-value=0.00057  Score=57.93  Aligned_cols=95  Identities=18%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             hhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCC------------cccc---------cCcc-----HH-
Q 018632          123 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFH---------PDAG-----AS-  175 (353)
Q Consensus       123 ~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~------------~G~~---------p~~g-----~~-  175 (353)
                      ....|||||.++|.+..+|.-|+++||-+++.+.+.++...+.            +|+-         -..+     .+ 
T Consensus         3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~   82 (154)
T PF01343_consen    3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE   82 (154)
T ss_dssp             HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred             cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence            4678999999999999999999999999999998887764332            2221         1111     00 


Q ss_pred             ---HHHhhcC-------------hH----HHHHHHhcCCCCCHHHHHHcCccceecCCCChh
Q 018632          176 ---FYLSHLP-------------GH----LGEFLALTGAKLNGAEMMACGLATHYSVSEKLP  217 (353)
Q Consensus       176 ---~~l~r~~-------------g~----~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~  217 (353)
                         ..+.+.+             ++    ...+-+..|..+++++|++.||||++-..+++.
T Consensus        83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~  144 (154)
T PF01343_consen   83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAI  144 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHH
Confidence               1111111             11    112235788999999999999999998655543

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=96.97  E-value=0.017  Score=53.79  Aligned_cols=149  Identities=13%  Similarity=0.131  Sum_probs=88.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC--CCccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWEND--PNIGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d--~~v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      |+++-++-.-..-++....-+.+..+++.+.+.  |-|.+ .+     +|+-+.+       +- .....+.+....+..
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~S-----GGARmQE-------g~-~sL~qmak~saa~~~  201 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNESLPLIIVCAS-----GGARMQE-------GS-LSLMQMAKISSALYD  201 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcCCCEEEEECC-----CCccccc-------cc-hhhhhhHHHHHHHHH
Confidence            555555555567889999999999999988765  33333 22     2233321       11 111111111111111


Q ss_pred             HHhhCCCcEEEEEccccccccccc-cccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018632          121 LLGTHLKPHVAILNGVTMGGGAGV-SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  199 (353)
Q Consensus       121 ~l~~~~kpvIaav~G~a~GgG~~l-al~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  199 (353)
                      ....-.+|.|+.+.|+|.||+... ++.||++|+.+++.+++...           ..+...+|..     +.-.-=+|+
T Consensus       202 ~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP-----------rVIe~t~ge~-----lpe~fq~ae  265 (296)
T CHL00174        202 YQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK-----------RVIEQTLNKT-----VPEGSQAAE  265 (296)
T ss_pred             HHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH-----------HHHHHhcCCc-----CCcccccHH
Confidence            122457999999999999998765 67799999988887776421           1111111210     111123567


Q ss_pred             HHHHcCccceecCCCChhHHHH
Q 018632          200 EMMACGLATHYSVSEKLPLIEE  221 (353)
Q Consensus       200 eA~~~Glv~~vv~~~~l~~~~~  221 (353)
                      -.++.|+||.||+..++.....
T Consensus       266 ~l~~~G~vD~iV~r~~lr~~l~  287 (296)
T CHL00174        266 YLFDKGLFDLIVPRNLLKGVLS  287 (296)
T ss_pred             HHHhCcCceEEEcHHHHHHHHH
Confidence            7889999999999888765433

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.92  E-value=0.021  Score=57.80  Aligned_cols=149  Identities=15%  Similarity=0.096  Sum_probs=92.8

Q ss_pred             EcCCC-CCCCCCHHHHHHHHHHHHHHhcCCC--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhh
Q 018632           49 LNRPS-ALNALNTNMGAKLNKLFKAWENDPN--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGT  124 (353)
Q Consensus        49 lnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  124 (353)
                      =|+|. ..-+++++......+.++.+++..-  |.+ -.++ |..|.+-.             .....+...+++.++..
T Consensus       321 And~~~~~G~~~~~~~~K~~r~i~~a~~~~lPlV~lvDs~G-~~~g~~~E-------------~~g~~~~~a~~~~a~~~  386 (512)
T TIGR01117       321 ANQPKVMAGCLDIDSSDKIARFIRFCDAFNIPIVTFVDVPG-FLPGVNQE-------------YGGIIRHGAKVLYAYSE  386 (512)
T ss_pred             EeccccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCcC-ccccHHHH-------------HHHHHHHHHHHHHHHHh
Confidence            34443 3456999999999999998876433  333 2222 54443321             12233455567788888


Q ss_pred             CCCcEEEEEccccccccccccc----cCCeEEEeCceEEeccCCCcccccCccHHHHHhh-cCh----HH-HHHHH---h
Q 018632          125 HLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPG----HL-GEFLA---L  191 (353)
Q Consensus       125 ~~kpvIaav~G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r-~~g----~~-a~~l~---l  191 (353)
                      ..+|.|+.|-|.++|||..-.+    .+|++++.+++.++.       .++-++...+.+ .+.    .. +..-.   .
T Consensus       387 ~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~  459 (512)
T TIGR01117       387 ATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKIAEY  459 (512)
T ss_pred             CCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHHHHH
Confidence            9999999999999988654333    389988888776654       333333333322 111    01 11111   1


Q ss_pred             cCCCCCHHHHHHcCccceecCCCChhH
Q 018632          192 TGAKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       192 tG~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                      .-+..++..+.+.|+||.|+++.+...
T Consensus       460 ~~~~~~~~~~a~~g~vD~VI~P~~tR~  486 (512)
T TIGR01117       460 REEFANPYKAAARGYVDDVIEPKQTRP  486 (512)
T ss_pred             HHhhcCHHHHHhcCCCCeeEChHHHHH
Confidence            123457889999999999999988764

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.89  E-value=0.0071  Score=53.01  Aligned_cols=96  Identities=16%  Similarity=0.041  Sum_probs=64.7

Q ss_pred             HHHHHhhCCCcEEEEEccccccccccccccCCeE--EEeCceEEeccCCCcccccCccHHHH-----------------H
Q 018632          118 FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR--VACGKTVFATPETLIGFHPDAGASFY-----------------L  178 (353)
Q Consensus       118 l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~r--ia~~~a~f~~pe~~~G~~p~~g~~~~-----------------l  178 (353)
                      ++..+...+.||...|-|.|...|..|++++|..  ++.+++++-+....-|+. +. .+-+                 +
T Consensus        77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~-G~-a~Di~i~A~ei~~~~~~l~~i~  154 (200)
T COG0740          77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQ-GQ-ASDIEIHAREILKIKERLNRIY  154 (200)
T ss_pred             HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCc-cC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667899999999999999999999999986  888888888766653321 11 1111                 0


Q ss_pred             hhcChHH---HHHHHhcCCCCCHHHHHHcCccceecCCCC
Q 018632          179 SHLPGHL---GEFLALTGAKLNGAEMMACGLATHYSVSEK  215 (353)
Q Consensus       179 ~r~~g~~---a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~  215 (353)
                      ....|..   -....-...-++|+||+++||+|+|.....
T Consensus       155 a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~  194 (200)
T COG0740         155 AEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE  194 (200)
T ss_pred             HHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence            0111111   112222344599999999999999997654

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.79  E-value=0.01  Score=59.96  Aligned_cols=143  Identities=13%  Similarity=0.098  Sum_probs=91.1

Q ss_pred             EeCC--EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcccCc--chhhHHHhhhcCChHHHHHHHHHH
Q 018632           40 GKAN--SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGG--DIVSLYHFMNQGKLEECKDFFRTL  115 (353)
Q Consensus        40 ~~~~--v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vg~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~  115 (353)
                      .-+|  |.++-.+..-...+++......+..+++.+.++.--.+.-  .=|+|+  ++.+-..        ....+.. .
T Consensus        53 ~I~G~~v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~~P~v~l--~dsgGa~~r~~eg~~--------~l~~~g~-i  121 (493)
T PF01039_consen   53 KINGRPVVVIAQDFTVLGGSVGEVHGEKIARAIELALENGLPLVYL--VDSGGAFLRMQEGVE--------SLMGMGR-I  121 (493)
T ss_dssp             EETTEEEEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHTEEEEEE--EEESSBCGGGGGHHH--------HHHHHHH-H
T ss_pred             eeCCeeEEEEEeccceecCCCCcccceeeehHHHHHHHcCCCcEEe--ccccccccccchhhh--------hhhhhHH-H
Confidence            3444  4444445444678899999999999999887653322200  004444  4433222        1122222 2


Q ss_pred             HHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCc-eEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCC
Q 018632          116 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGA  194 (353)
Q Consensus       116 ~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~  194 (353)
                      ..-...+.. ..|+|+++.|+|.|||..++..||++|++++ +.+++.           +...+         + ..+|+
T Consensus       122 ~~~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~-----------GP~vv---------~-~~~Ge  179 (493)
T PF01039_consen  122 FRAIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA-----------GPRVV---------E-SATGE  179 (493)
T ss_dssp             HHHHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS-----------THHHH---------H-HHHSS
T ss_pred             HHHHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec-----------ccccc---------c-cccCc
Confidence            223334455 9999999999999999999999999999997 887754           11111         1 24578


Q ss_pred             CCCHHHH-------HHcCccceecCCCC
Q 018632          195 KLNGAEM-------MACGLATHYSVSEK  215 (353)
Q Consensus       195 ~~~a~eA-------~~~Glv~~vv~~~~  215 (353)
                      .++.++.       ...|.+|.++++++
T Consensus       180 ~~~~~~lgG~~~h~~~sG~~d~v~~de~  207 (493)
T PF01039_consen  180 EVDSEELGGADVHAAKSGVVDYVVDDEE  207 (493)
T ss_dssp             CTSHHHHHBHHHHHHTSSSSSEEESSHH
T ss_pred             cccchhhhhhhhhcccCCCceEEEechH
Confidence            8887764       46899999998754

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=96.47  E-value=0.0028  Score=58.10  Aligned_cols=90  Identities=12%  Similarity=0.117  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHHhc
Q 018632          114 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALT  192 (353)
Q Consensus       114 ~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~lt  192 (353)
                      .+.+-+..+..+++|+||.|=|---+||.--...+|.+.+-++++|+.      +.|.+.++.++..---.. |.+    
T Consensus       176 AIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~~ka~eAAe----  245 (317)
T COG0825         176 AIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDASKAKEAAE----  245 (317)
T ss_pred             HHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcChhhhHHHHH----
Confidence            344455667889999999999987777766667789999999999984      456665554433222222 333    


Q ss_pred             CCCCCHHHHHHcCccceecCC
Q 018632          193 GAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       193 G~~~~a~eA~~~Glv~~vv~~  213 (353)
                      .-.++|++.+++|+||.|+|.
T Consensus       246 ~mkita~dLk~lgiID~II~E  266 (317)
T COG0825         246 AMKITAHDLKELGIIDGIIPE  266 (317)
T ss_pred             HcCCCHHHHHhCCCcceeccC
Confidence            468999999999999999975

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=96.14  E-value=0.033  Score=57.37  Aligned_cols=84  Identities=12%  Similarity=-0.109  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccc
Q 018632           61 NMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM  138 (353)
Q Consensus        61 ~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~  138 (353)
                      -.+.++.+.|+.+..|+.|+.  =.-.. +.|+.+..+                +.+.+.+..+....|||||..++.+ 
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~-~~g~~~~~~----------------~ei~~ai~~fk~sgKpVvA~~~~~~-  137 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSN-FSGWDSPHL----------------VEIGSALSEFKDSGKPVYAYGTNYS-  137 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccC-CCCCCHHHH----------------HHHHHHHHHHHhcCCeEEEEEcccc-
Confidence            356799999999999999997  00001 113333211                1223344445567899999888775 


Q ss_pred             cccccccccCCeEEEeCceEEecc
Q 018632          139 GGGAGVSIPGTFRVACGKTVFATP  162 (353)
Q Consensus       139 GgG~~lal~cD~ria~~~a~f~~p  162 (353)
                      -+|.-|+.+||-+++.+.+.+++.
T Consensus       138 s~~YylAs~AD~I~~~p~G~v~~~  161 (584)
T TIGR00705       138 QGQYYLASFADEIILNPMGSVDLH  161 (584)
T ss_pred             chhhhhhhhCCEEEECCCceEEee
Confidence            578999999999999998877553

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=95.86  E-value=0.12  Score=52.85  Aligned_cols=140  Identities=14%  Similarity=0.115  Sum_probs=82.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      |+++-.+..-+.-+++......+..+++.+.+..-  |.+ -.|++     .+.+  +   .........+. .......
T Consensus       131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSgGa-----rl~~--q---~e~~~~~~~~g-~if~~~~  199 (569)
T PLN02820        131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGA-----NLPR--Q---AEVFPDRDHFG-RIFYNQA  199 (569)
T ss_pred             EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCc-----CCcc--c---ccccchHhHHH-HHHHHHH
Confidence            44444444446789999999999999999876543  333 22222     2211  0   00000000111 1111222


Q ss_pred             HHhhCCCcEEEEEccccccccccccccCCeEEEeC-ceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018632          121 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  199 (353)
Q Consensus       121 ~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~-~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  199 (353)
                      .+....+|.|+++-|+|.|||.....+||++|+++ ++.+++.           +...+         + ..+|+.++++
T Consensus       200 ~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a-----------GP~vV---------~-~~~Ge~v~~e  258 (569)
T PLN02820        200 RMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA-----------GPPLV---------K-AATGEEVSAE  258 (569)
T ss_pred             HHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec-----------CHHHH---------H-hhcCcccCHH
Confidence            34556799999999999999999999999999987 4555542           11111         1 2356667766


Q ss_pred             HHH-------HcCccceecCCCC
Q 018632          200 EMM-------ACGLATHYSVSEK  215 (353)
Q Consensus       200 eA~-------~~Glv~~vv~~~~  215 (353)
                      |.-       .-|.+|.+++++.
T Consensus       259 eLGGa~~h~~~sGv~d~~~~de~  281 (569)
T PLN02820        259 DLGGADVHCKVSGVSDHFAQDEL  281 (569)
T ss_pred             HhCCHHHhcccccccccccCchH
Confidence            652       4688888877653

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.53  E-value=0.087  Score=53.36  Aligned_cols=135  Identities=14%  Similarity=0.199  Sum_probs=80.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      |+++-.+-.-+.-+++......+..+++.+.++.-  |.+ -+     +|+.+.+-.        .....+.+.+...  
T Consensus        84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dS-----gGarm~eg~--------~~l~~~~~~~~~~--  148 (512)
T TIGR01117        84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDS-----GGARIQEAV--------DALKGYGDIFYRN--  148 (512)
T ss_pred             EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecC-----CCCCccccc--------hhhhhHHHHHHHH--
Confidence            44444444446778999999999999998876543  332 21     222221100        0001111111111  


Q ss_pred             HHhhCCCcEEEEEccccccccccccccCCeEEEeCc-eEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018632          121 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  199 (353)
Q Consensus       121 ~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  199 (353)
                      ....-.+|.|+++-|+|.||+......||++|++++ +.+++.           +...+.          ..+|+.++++
T Consensus       149 ~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------GP~vv~----------~~~Ge~v~~e  207 (512)
T TIGR01117       149 TIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------GPQVIK----------TVTGEEVTAE  207 (512)
T ss_pred             HHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec-----------ChHHHH----------hhcCcccchh
Confidence            112345899999999999999888789999999996 445542           111111          1356666666


Q ss_pred             HH-------HHcCccceecCCC
Q 018632          200 EM-------MACGLATHYSVSE  214 (353)
Q Consensus       200 eA-------~~~Glv~~vv~~~  214 (353)
                      |.       ..-|++|.+++++
T Consensus       208 ~lGGa~~h~~~sGv~d~~~~de  229 (512)
T TIGR01117       208 QLGGAMAHNSVSGVAHFIAEDD  229 (512)
T ss_pred             hcchHHHhccccceeEEecCCh
Confidence            65       2579999888764

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PRK10949 protease 4; Provisional

Probab=94.71  E-value=0.23  Score=51.45  Aligned_cols=84  Identities=15%  Similarity=0.028  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccc
Q 018632           61 NMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM  138 (353)
Q Consensus        61 ~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~  138 (353)
                      -.+.++.++|+.+..|+.|+.  =.-..+. |..+..                .+.+.+.+..+....|||||.-+.. -
T Consensus        95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~g-G~~~a~----------------~~eI~~ai~~fk~sGKpVvA~~~~~-~  156 (618)
T PRK10949         95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFA-GADQPS----------------MQYIGKALREFRDSGKPVYAVGDSY-S  156 (618)
T ss_pred             ccHHHHHHHHHHHhcCCCceEEEEEeCCCC-CccHHH----------------HHHHHHHHHHHHHhCCeEEEEecCc-c
Confidence            345689999999999999997  0001111 111111                1222334444556789999864444 4


Q ss_pred             cccccccccCCeEEEeCceEEecc
Q 018632          139 GGGAGVSIPGTFRVACGKTVFATP  162 (353)
Q Consensus       139 GgG~~lal~cD~ria~~~a~f~~p  162 (353)
                      -+|.-||.+||-+++.+.+.+++.
T Consensus       157 s~~YyLASaAD~I~l~P~G~v~~~  180 (618)
T PRK10949        157 QGQYYLASFANKIYLSPQGVVDLH  180 (618)
T ss_pred             chhhhhhhhCCEEEECCCceEEEe
Confidence            568899999999999998877653

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=93.36  E-value=0.3  Score=50.03  Aligned_cols=141  Identities=13%  Similarity=0.049  Sum_probs=83.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCC--cccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEc
Q 018632           57 ALNTNMGAKLNKLFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILN  134 (353)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~--v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~  134 (353)
                      +++++-.....+.++..+.-.-  |.+-....|-.|.+-.             .....+...+++.++....+|.|+.|=
T Consensus       381 ~l~~~~a~Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E-------------~~G~~~~~a~l~~A~a~~~VP~isvi~  447 (569)
T PLN02820        381 ILFTESALKGAHFIELCAQRGIPLLFLQNITGFMVGSRSE-------------ASGIAKAGAKMVMAVACAKVPKITIIV  447 (569)
T ss_pred             ccCHHHHHHHHHHHHHHHhcCCCEEEEEECCCCCCCHHHH-------------HhhHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            4666666666666665554211  1111112244433222             233456677888999999999999999


Q ss_pred             cccccccccccc----cCCeEEEeCceEEeccCCCcccccCccHHHHHhhc-C------h------HH-H-HHH--HhcC
Q 018632          135 GVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-P------G------HL-G-EFL--ALTG  193 (353)
Q Consensus       135 G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~-~------g------~~-a-~~l--~ltG  193 (353)
                      |.++|+|..-.+    ..|++++.+++       .+|+.++-++...+.+. +      |      .. + .+.  -..-
T Consensus       448 g~a~G~g~~aM~g~~~~~d~~~awp~A-------~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (569)
T PLN02820        448 GGSFGAGNYGMCGRAYSPNFLFMWPNA-------RIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYE  520 (569)
T ss_pred             CCcchHHHHHhcCcCCCCCEEEECCCC-------eEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHH
Confidence            999998755443    55676666555       55565555555555431 1      0      00 0 010  1112


Q ss_pred             CCCCHHHHHHcCccceecCCCChh
Q 018632          194 AKLNGAEMMACGLATHYSVSEKLP  217 (353)
Q Consensus       194 ~~~~a~eA~~~Glv~~vv~~~~l~  217 (353)
                      +..++-.|-+.|++|.|+++.+..
T Consensus       521 ~~~~p~~aa~~~~vD~VIdP~dTR  544 (569)
T PLN02820        521 REANPYYSTARLWDDGVIDPADTR  544 (569)
T ss_pred             HhCCHHHHHHcCCcCcccCHHHHH
Confidence            356777888999999999887654

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.97  E-value=0.45  Score=43.11  Aligned_cols=125  Identities=15%  Similarity=0.135  Sum_probs=68.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCcc---c---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDPNIG---F---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~---v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      +|.++-+.+...|-.++.++.-+   .   +.|+.-.+|.-                         ++..+..++-||-.
T Consensus       101 Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglA-------------------------IYDtMq~ik~~V~T  155 (275)
T KOG0840|consen  101 IDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLA-------------------------IYDTMQYIKPDVST  155 (275)
T ss_pred             CcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhh-------------------------HHHHHHhhCCCcee
Confidence            77888888888887777654433   2   55544433332                         33344456667766


Q ss_pred             EEccccccccccccccCCeEEEeCceEEeccCCCcccc-cCcc----HHHHHhh---cChHH----HHHHHhcC------
Q 018632          132 ILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH-PDAG----ASFYLSH---LPGHL----GEFLALTG------  193 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~-p~~g----~~~~l~r---~~g~~----a~~l~ltG------  193 (353)
                      .+=|.|.+-|..|..+     .+.+-++++|..++=+. |-+|    .+-+..+   ++-..    -.+.--||      
T Consensus       156 ic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i  230 (275)
T KOG0840|consen  156 ICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVI  230 (275)
T ss_pred             eehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            6777777766554433     24455555555555443 2222    1111111   11100    01111244      


Q ss_pred             -------CCCCHHHHHHcCccceecC
Q 018632          194 -------AKLNGAEMMACGLATHYSV  212 (353)
Q Consensus       194 -------~~~~a~eA~~~Glv~~vv~  212 (353)
                             +.++|+||+++||+|+|+.
T Consensus       231 ~~d~dRd~fmsa~EA~eyGliD~v~~  256 (275)
T KOG0840|consen  231 EKDMDRDRFMSAEEAKEYGLIDKVID  256 (275)
T ss_pred             HhhhcccccCCHHHHHHhcchhhhhc
Confidence                   4489999999999999986

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=92.96  E-value=1.3  Score=40.61  Aligned_cols=145  Identities=12%  Similarity=0.099  Sum_probs=91.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      ++...++-.--.-+|..-.=+.+..+++.+-++.---+   .+|     |+-+.+-.        -...+ +......+.
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSG-----GARMQEg~--------lSLMQ-MaktsaAl~  189 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASG-----GARMQEGI--------LSLMQ-MAKTSAALK  189 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCc-----chhHhHHH--------HHHHH-HHHHHHHHH
Confidence            55555655555678888888999999998876543222   322     33332210        01111 122334556


Q ss_pred             HHhhCCCcEEEEEccccccc-cccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018632          121 LLGTHLKPHVAILNGVTMGG-GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  199 (353)
Q Consensus       121 ~l~~~~kpvIaav~G~a~Gg-G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  199 (353)
                      .+.....|.|+.+..+..|| -..+++..|+.||.++|.+++...               |.+-....+-+- -.-=+++
T Consensus       190 ~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGp---------------RVIEQTire~LP-egfQ~aE  253 (294)
T COG0777         190 RLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGP---------------RVIEQTIREKLP-EGFQTAE  253 (294)
T ss_pred             HHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcc---------------hhhhhhhcccCC-cchhhHH
Confidence            66778999999999999998 466999999999988887776522               222211111111 1133466


Q ss_pred             HHHHcCccceecCCCChhH
Q 018632          200 EMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       200 eA~~~Glv~~vv~~~~l~~  218 (353)
                      -.++.|+||.||+..++..
T Consensus       254 fLlehG~iD~iv~R~elr~  272 (294)
T COG0777         254 FLLEHGMIDMIVHRDELRT  272 (294)
T ss_pred             HHHHcCCceeeecHHHHHH
Confidence            7789999999999877764

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=92.51  E-value=0.54  Score=47.54  Aligned_cols=152  Identities=14%  Similarity=0.100  Sum_probs=88.9

Q ss_pred             EEEcCCCCCC-CCCHHHHHHHHHHHHHHhcCCC--cccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHh
Q 018632           47 AILNRPSALN-ALNTNMGAKLNKLFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLG  123 (353)
Q Consensus        47 I~lnrp~~~N-al~~~~~~~L~~~l~~~~~d~~--v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  123 (353)
                      |.-|+|.... +++++-.....+.++..+...-  |.+-.-..|..|-+-             +.....+...+++.++.
T Consensus       298 iian~~~~~~G~~~~~~a~K~arfi~lcd~~~iPlv~l~dtpGf~~g~~~-------------E~~g~~~~ga~~~~a~~  364 (493)
T PF01039_consen  298 IIANNPRQRAGALDPDGARKAARFIRLCDAFNIPLVTLVDTPGFMPGPEA-------------ERAGIIRAGARLLYALA  364 (493)
T ss_dssp             EEEE-TTCGGGEB-HHHHHHHHHHHHHHHHTT--EEEEEEECEB--SHHH-------------HHTTHHHHHHHHHHHHH
T ss_pred             EEEeccccccccCChHHHHHHHHHHHHHHhhCCceEEEeecccccccchh-------------hhcchHHHHHHHHHHHH
Confidence            4446664222 6999999999999988886322  222111224333322             22334566678899999


Q ss_pred             hCCCcEEEEEccccccccccccccC----CeEEEeCceEEeccCCCcccccCccHHHHHhhcChH---------HH--HH
Q 018632          124 THLKPHVAILNGVTMGGGAGVSIPG----TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---------LG--EF  188 (353)
Q Consensus       124 ~~~kpvIaav~G~a~GgG~~lal~c----D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~---------~a--~~  188 (353)
                      .+++|+|..|-|.++|+|.......    |+++|.++++++       +.++-+....+.+.--.         .+  .+
T Consensus       365 ~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~  437 (493)
T PF01039_consen  365 EATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQRAE  437 (493)
T ss_dssp             HH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHH
T ss_pred             cCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHHHH
Confidence            9999999999999999887554444    788777666665       44444444333321100         00  11


Q ss_pred             HHh--cCCCCCHHHHHHcCccceecCCCChhH
Q 018632          189 LAL--TGAKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       189 l~l--tG~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                      .+-  .-...++..+...|++|.|+++.+...
T Consensus       438 ~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~  469 (493)
T PF01039_consen  438 KIAEYEDELSSPYRAASRGYVDDIIDPAETRK  469 (493)
T ss_dssp             HHHHHHHHHSSHHHHHHTTSSSEESSGGGHHH
T ss_pred             HHHHHHHhcCCHHHHHhcCCCCCccCHHHHHH
Confidence            110  112268889999999999999988764

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=90.80  E-value=0.33  Score=48.76  Aligned_cols=99  Identities=14%  Similarity=0.091  Sum_probs=60.5

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--cccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHH
Q 018632           45 RMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL  122 (353)
Q Consensus        45 ~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  122 (353)
                      .++--+.+.+.-++.+-....+..+.+.+.++..  |.+    .=|+|+.+.+-.        .....+.+ ...-...+
T Consensus        94 ~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l----~dsgGari~~~v--------~~l~g~g~-iF~~~a~~  160 (526)
T COG4799          94 FVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGL----NDSGGARIQEGV--------PSLAGYGR-IFYRNARA  160 (526)
T ss_pred             EEEEecCceecccccccccchHHHHHHHHHHcCCCEEEE----EcccccccccCc--------cccccchH-HHHHHHHh
Confidence            3333344557778888778888888887776433  333    002223332110        11111111 11122334


Q ss_pred             hhCCCcEEEEEccccccccccccccCCeEEEeCce
Q 018632          123 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT  157 (353)
Q Consensus       123 ~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a  157 (353)
                      ... +|.|++|-|.|.|||.-+-..||++|+.++.
T Consensus       161 Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~  194 (526)
T COG4799         161 SGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ  194 (526)
T ss_pred             ccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence            444 9999999999999999999999999999973

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=89.94  E-value=0.62  Score=45.72  Aligned_cols=59  Identities=14%  Similarity=0.095  Sum_probs=47.7

Q ss_pred             HHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe---eccC
Q 018632          289 STLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ---ILNK  351 (353)
Q Consensus       289 ~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af---l~~~  351 (353)
                      +.+.+|+..+|.++..+|+.++.. .....+.+..|...+..++.   ++|+.|++.+|   +++|
T Consensus       228 ~~~~~i~~~~p~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~---~~d~~ei~~al~~~~~kr  289 (401)
T PLN02157        228 EQLKKLLTDDPSVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFS---HDTVEEIIDSLEIEAGRR  289 (401)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhc---CCCHHHHHHHHHhhhccc
Confidence            457888889999999999999865 34466777778888888776   99999999999   6554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	353
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		1e-53
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		3e-36
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		4e-27
3ju1_A	407	Crystal Structure Of Enoyl-Coa HydrataseISOMERASE F		5e-22
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		3e-14
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		2e-12
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		2e-12
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		2e-12
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		2e-12
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		2e-12
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		3e-12
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		3e-12
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		5e-12
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		9e-12
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		4e-11
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		1e-10
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		1e-10
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		1e-09
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		1e-09
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		2e-09
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		4e-09
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		4e-09
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		5e-09
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		5e-09
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		6e-09
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		6e-09
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		6e-09
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		6e-09
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		6e-09
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		7e-09
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		7e-09
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		6e-08
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-07
2f6q_A	280	The Crystal Structure Of Human Peroxisomal Delta3,		1e-07
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		3e-07
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		1e-06
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		2e-06
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		3e-06
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		3e-06
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		5e-06
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-05
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-05
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-05
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-05
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		3e-05
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		4e-05
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		6e-05
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		1e-04
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		2e-04
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		2e-04
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		2e-04
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-04
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		3e-04
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		3e-04
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		4e-04
3m6m_A	305	Crystal Structure Of Rpff Complexed With Rec Domain		7e-04
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		7e-04
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		7e-04
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		8e-04

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/320 (39%), Positives = 178/320 (55%), Gaps = 16/320 (5%)
Query: 31  DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN-----IGFGSGR 85
           D   +VL+  K  + +  LNRP  LNAL  N   ++    K WE DP      I    G+
Sbjct: 3   DAAEEVLLGKKGCTGVITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGK 62
Query: 86  AFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVS 145
           AFCAGGDI  +     + K +    FFR  Y     +G+  KP+VA+++G+T GGG G+S
Sbjct: 63  AFCAGGDIRVISE-AEKAKQKIAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGGVGLS 121
Query: 146 IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACG 205
           + G FRVA  K +FA PET IG  PD G  ++L  L G LG FLALTG +L G ++   G
Sbjct: 122 VHGQFRVATEKCLFAXPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAG 181
Query: 206 LATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKY--SDLVYPDKNSVIHR-IDIVDKC 262
           +ATH+  SEKL  +EE+L  L +     I + LE Y     +  DK+ ++    D ++ C
Sbjct: 182 IATHFVDSEKLAXLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHXDKINSC 241
Query: 263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLV 322
           F  +TVEEII++L+ + S     +    L+++ + SP SLK++LR + EG  +T  E L 
Sbjct: 242 FSANTVEEIIENLQQDGS----SFALEQLKVINKXSPTSLKITLRQLXEGSSKTLQEVLT 297
Query: 323 REYRMSLQGVSRLISGDFYE 342
            EYR+S Q   R    DF+E
Sbjct: 298 XEYRLS-QACXR--GHDFHE 314

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/324 (33%), Positives = 169/324 (52%), Gaps = 22/324 (6%)
Query: 34  NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSG-RAFC 88
             VLV  +    +  LNRP A+N+L   M   + +   AWEND ++      G+G R  C
Sbjct: 9   EDVLVNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLC 68
Query: 89  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 148
           AGGD+V++YH   +    E + F+   Y     +G + KP+V+I++G+ MGGG GV   G
Sbjct: 69  AGGDVVAIYHSA-KADGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHG 127
Query: 149 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLAT 208
             RV    T  A PE  IGF PD G ++ LS  PG LG   ALTGA  +GA+ +  G A 
Sbjct: 128 NVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPGKLGLHAALTGAPFSGADAIVMGFAD 187
Query: 209 HYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 268
           HY   +K+    +E  + V  D   ++A L  ++    P  + +  +   +D+C+  DTV
Sbjct: 188 HYVPHDKI----DEFTRAVIADG--VDAALAAHAQ--EPPASPLAEQRSWIDECYTGDTV 239
Query: 269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIRE-GRFQTFDECLVREYRM 327
            +II +L +     + P  G    L+   SP++L V+L S+R   + Q+ ++ L +EYR+
Sbjct: 240 ADIIAALRAH----DAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRV 295
Query: 328 SLQGVSRLISGDFYEVSNFQILNK 351
           S    + L S D  E    Q+++K
Sbjct: 296 S---CASLKSHDLVEGIRAQLVDK 316

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 147/336 (43%), Gaps = 39/336 (11%)
Query: 26  SSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN-----IG 80
            S +D L  +V   G+       L+RP+ALNAL      +++   + W  DP      I 
Sbjct: 21  QSXSDVLIRKVRRAGRIT-----LSRPAALNALTCAXVQEIDAALRGWIGDPEVELVVID 75
Query: 81  FGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 140
               RAFCAGGDI  L+     G     +DF+R  Y     +    KP V++  G T GG
Sbjct: 76  AEGPRAFCAGGDIAELHGRGVAGDHAFGQDFWRVEYRXNDRIAAFPKPIVSLXQGFTXGG 135
Query: 141 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE 200
           G G+      R+    +  + PE  IG  PD G +  L+  PG +G +L LTGA+    +
Sbjct: 136 GVGLGCHARHRIVGETSQISXPECAIGLVPDVGGTHLLARAPGRIGVWLGLTGARXGPGD 195
Query: 201 MMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI---- 256
            +  G A  + V E              D P +I A LE   DL  PD  +   R+    
Sbjct: 196 AIFAGFADRF-VPE-------------ADWPDLI-AALEG-GDLALPDHAAPEGRLPVLQ 239
Query: 257 DIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSI-REGRFQ 315
           D +D+ F   T+ EI   LE+     + P     L+ L+ +SPL+L  +L  + R G   
Sbjct: 240 DEIDRLFA-GTLAEIPARLEA----TDTPLAAEALKALRRSSPLALAATLEILQRLGPSA 294
Query: 316 TFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 351
              E L  EYR + +   +    DF E     I++K
Sbjct: 295 GIREALDLEYRFTYRAQGQ---ADFLEGIRAAIIDK 327

>pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN Length = 407

Iteration: 1
 Score =  101 bits (252), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 140/316 (44%), Gaps = 29/316 (9%)
Query: 46  MAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYH-- 98
           +  LN   ALNAL+ +           W+ DP I      GSG +AFCAGGD+ +LYH  
Sbjct: 54  VVTLNVEKALNALDLDXVRAXTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHAS 113
Query: 99  FMNQGKLEE-CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
              +G++ E  K FF   Y   YLL T+ KP +   +G+  GGG G+    + +V    +
Sbjct: 114 VAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVXGGGLGLXAGASHKVVTETS 173
Query: 158 VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLP 217
             A PE  IG +PD G S++L+  PG  G FL LT    N A+    GLA HY   +   
Sbjct: 174 RIAXPEVTIGLYPDVGGSYFLNRXPGKXGLFLGLTAYHXNAADACYVGLADHYLNRDDKE 233
Query: 218 LIEEELGKL-VTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLE 276
           L  +    L  +D P++    L+          N + +++DI      L   +E ID L 
Sbjct: 234 LXFDAXATLDWSDSPALNHQRLDTXI-------NELSNQVDIPKGDSVLAESQEXIDRLX 286
Query: 277 S---------EASLIND-PWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYR 326
           +          ++L  D  W           SP+S  ++    + G   +  +C   E  
Sbjct: 287 AGSLTDIVTRXSTLSTDEAWLSKACATXLAGSPISWHLAYIQTQLGTKLSLAQCFKWELT 346
Query: 327 MSLQGVSRLISGDFYE 342
           +S+   ++   GDF E
Sbjct: 347 VSVNVCAK---GDFCE 359

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 90/195 (46%), Gaps = 24/195 (12%)
Query: 40  GKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIV 94
           GK N+   I LNRP ALNAL   +  +LN+  K +E DP +G     G  +AF AG DI 
Sbjct: 38  GKNNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDKAFAAGADIK 97
Query: 95  SLYHFMNQGKLEECKDFFRTLYSFIYL-----LGTHLKPHVAILNGVTMGGGAGVSIPGT 149
            + +             F+  YS  +L     L    KP +A +NG   GGG  +++   
Sbjct: 98  EMQNLS-----------FQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCD 146
Query: 150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLAT 208
              A  K  FA PE LIG  P AG +  L+   G  L   + LTG +++  +    GL +
Sbjct: 147 IIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVS 206
Query: 209 HYSVSEKLPLIEEEL 223
                E   L+EE +
Sbjct: 207 KICPVE--TLVEEAI 219

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 11/186 (5%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           +LVE      +  LNRP ALNALN+ +  ++       ++DP+IG     GS +AF AG 
Sbjct: 7   ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 66
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           DI  +             DFF T       L     P +A + G  +GGG  +++     
Sbjct: 67  DIKEMADLTFADAF--TADFFATWGK----LAAVRTPTIAAVAGYALGGGCELAMMCDVL 120
Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 210
           +A     F  PE  +G  P  G S  L+   G      L LTG  ++ AE    GL +  
Sbjct: 121 IAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 180
Query: 211 SVSEKL 216
             ++ L
Sbjct: 181 VPADDL 186

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 11/186 (5%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGG 91
           +LVE      +  LNRP ALNALN+ +  ++       ++DP+IG     GS +AF AG 
Sbjct: 6   ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 65
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           DI  +             DFF T       L     P +A + G  +GGG  +++     
Sbjct: 66  DIKEMADLTFADAF--TADFFATWGK----LAAVRTPTIAAVAGYALGGGCELAMMCDVL 119
Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 210
           +A     F  PE  +G  P  G S  L+   G      L LTG  ++ AE    GL +  
Sbjct: 120 IAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 179
Query: 211 SVSEKL 216
             ++ L
Sbjct: 180 VPADDL 185

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 33/190 (17%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP ALNAL   +  +LN+  + +E DP +G     G  +AF AG DI  + +      
Sbjct: 22  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT---- 77
Query: 105 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
                  F+  YS  +L  +H        KP +A +NG  +GGG  +++      A  K 
Sbjct: 78  -------FQDCYSGKFL--SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 128
Query: 158 VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 216
            F  PE L+G  P AG +  L+   G  L   + LTG +++  +    GL     VS+  
Sbjct: 129 QFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL-----VSKIF 183
Query: 217 P---LIEEEL 223
           P   L+EE +
Sbjct: 184 PVETLVEEAI 193

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 33/190 (17%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP ALNAL   +  +LN+  + +E DP +G     G  +AF AG DI  + +      
Sbjct: 20  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT---- 75
Query: 105 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
                  F+  YS  +L  +H        KP +A +NG  +GGG  +++      A  K 
Sbjct: 76  -------FQDCYSGKFL--SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 126
Query: 158 VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 216
            F  PE L+G  P AG +  L+   G  L   + LTG +++  +    GL     VS+  
Sbjct: 127 QFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL-----VSKIF 181
Query: 217 P---LIEEEL 223
           P   L+EE +
Sbjct: 182 PVETLVEEAI 191

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 33/190 (17%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP ALNAL   +  +LN+  + +E DP +G     G  +AF AG DI  + +      
Sbjct: 23  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRT---- 78
Query: 105 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
                  F+  YS  +L  +H        KP +A +NG  +GGG  +++      A  K 
Sbjct: 79  -------FQDCYSGKFL--SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA 129
Query: 158 VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKL 216
            F  PE L+G  P AG +  L+   G  L   + LTG +++  +    GL     VS+  
Sbjct: 130 QFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL-----VSKIF 184
Query: 217 P---LIEEEL 223
           P   L+EE +
Sbjct: 185 PVETLVEEAI 194

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 39  EGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIV 94
           E K       LNRP  LNA    M A++ K  K    DPN+      G+GRAFCAG D+ 
Sbjct: 8   EVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLS 67
Query: 95  SLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTFRVA 153
            +   M+ G      D  R+ Y+ +     HL KP VA +NG   G G  +++   FR+ 
Sbjct: 68  GVTEEMDHG------DVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLL 121
Query: 154 CGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLN 197
             K  FA     +G  PDAG  +YL  L G      LA+ G K+ 
Sbjct: 122 SEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVT 166

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 11/186 (5%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           +LVE      +  LNRP ALNALN+ +  ++       ++DP+IG     GS +AF AG 
Sbjct: 27  ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 86
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           DI  +             DFF T       L     P +A + G  +GGG  +++     
Sbjct: 87  DIKEMADLTFADAF--TADFFATWGK----LAAVRTPTIAAVAGYALGGGCELAMMCDVL 140
Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHY 210
           +A     F  PE  +G  P  G S  L+   G      L LTG  ++ AE    GL +  
Sbjct: 141 IAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 200
Query: 211 SVSEKL 216
             ++ L
Sbjct: 201 VPADDL 206

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           VL E +    +  LNRP  LNA+   +   L    K  E D  +      G+GRAF AG 
Sbjct: 2   VLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQ 61
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           D   L  F ++    + +   R     +  L    KP V  +NGV  G G  +++ G  R
Sbjct: 62  D---LTEFGDRKP--DYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLR 116
Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLATHY 210
           +A     F T    IG  PD+G SF L  L G    + L L   +L+  E +A GL    
Sbjct: 117 LAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRV 176
Query: 211 SVSEKLPLIEEEL 223
             +EK  L+EE L
Sbjct: 177 VPAEK--LMEEAL 187

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 30/221 (13%)
Query: 25  SSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF--- 81
           + ++T+      +VE + N  +  ++RP A NA+N  +   +    +  + DP +     
Sbjct: 6   AETLTEVTRQAAVVERRGNVALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVI 65
Query: 82  -GSG-RAFCAGGDIVSLYHFMNQGKLEECK-DFFRTLYSFIYLLGTHLKPHVAILNGVTM 138
            G+G ++FCAG D+ ++    N    E  +  F   ++ FI       KP +A +NG  +
Sbjct: 66  TGAGDKSFCAGADLKAISRGENLYHAEHPEWGFAGYVHHFID------KPTIAAVNGTAL 119
Query: 139 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLN 197
           GGG+ +++     +AC    F  PE   G    AG  F +   LP  +   L LTG  + 
Sbjct: 120 GGGSELALASDLVIACESASFGLPEVKRGLIAGAGGVFRIVEQLPRKVALELVLTGEPMT 179
Query: 198 GAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACL 238
            ++ +  GL     ++E +P            D +V+EA L
Sbjct: 180 ASDALRWGL-----INEVVP------------DGTVVEAAL 203

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           L RP  LNAL+  M A++    +A++ +  +      G GRAF AG DI  +    +  +
Sbjct: 20  LARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKD-DPIR 78
Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
           LE    F    +  + ++ T   P +A +NG+ +GGG  +++     VA     F  PE 
Sbjct: 79  LEWLNQF--ADWDRLSIVKT---PMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEV 133
Query: 165 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE 222
            +G  P AG +  L+ L  P    E+L  TGA+++  E    G+     VS +L L+EE 
Sbjct: 134 NLGVMPGAGGTQRLTKLIGPKRALEWL-WTGARMSAKEAEQLGIVNRV-VSPEL-LMEET 190
Query: 223 L---GKLVTDDP---SVIEACLEKYSDLVYP 247
           +   G+L    P    +I+  ++K  D  YP
Sbjct: 191 MRLAGRLAEQPPLALRLIKEAVQKAVD--YP 219

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 81/197 (41%), Gaps = 22/197 (11%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           L+RP ALNALN  + A++    + ++ D  IG     GS RAF AG DI  +        
Sbjct: 25  LDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQA 84
Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            E      R L S    L    KP VA + G  +GGG  +++     +A     F  PE 
Sbjct: 85  RE------RNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEI 138
Query: 165 LIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATH-----------YSV 212
            +G  P  G +  L+   G      L LTG  L   E    GL +             +V
Sbjct: 139 TLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAV 198
Query: 213 SEKLPLIEEELGKLVTD 229
           ++++  +    G+ V D
Sbjct: 199 AQRIARMSRPAGRAVKD 215

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 7/197 (3%)
Query: 20  SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN- 78
           +Q +   S+  D+  ++ V      R+  LNRP +LN++N ++   L +L++   +DP  
Sbjct: 14  AQTQGPGSMVYDMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTA 73
Query: 79  ---IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 135
              +  G+GRAF AGGD   L        L       R     +  +     P VA +NG
Sbjct: 74  RAAVITGAGRAFSAGGDFGYLKELSADADLR--AKTIRDGREIVLGMARCRIPVVAAVNG 131
Query: 136 VTMGGGAGVSIPGTFRVACGKTVFATPETLIGF-HPDAGASFYLSHLPGHLGEFLALTGA 194
             +G G  +               A P   +G    D G   +  H+   L +  ALTG 
Sbjct: 132 PAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGT 191
Query: 195 KLNGAEMMACGLATHYS 211
           +++    +  GLA H +
Sbjct: 192 RISAQRAVELGLANHVA 208

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 15/187 (8%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----G 82
           S+TD      L E + N  +  +NRP A NA+N  +   +    +  ++DP +      G
Sbjct: 4   SMTD--APGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTG 61
Query: 83  SG-RAFCAGGDIVSLYHFMNQGKLEECK-DFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 140
           +G ++FCAG D+ ++    N    +  +  F   +  FI       KP +A +NG  +GG
Sbjct: 62  AGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFID------KPTIAAVNGTALGG 115
Query: 141 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGHLGEFLALTGAKLNGA 199
           G  +++     VA  +  F  PE   G    AG  F ++  LP  +   L LTG  L+ A
Sbjct: 116 GTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAA 175
Query: 200 EMMACGL 206
                GL
Sbjct: 176 AARDWGL 182

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 15/187 (8%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----G 82
           S+TD      L E + N  +  +NRP A NA+N  +   +    +  ++DP +      G
Sbjct: 4   SMTD--APGALAERRGNVMVITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTG 61
Query: 83  SG-RAFCAGGDIVSLYHFMNQGKLEECK-DFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 140
           +G ++FCAG D+ ++    N    +  +  F   +  FI       KP +A +NG  +GG
Sbjct: 62  AGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFID------KPTIAAVNGTALGG 115
Query: 141 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGHLGEFLALTGAKLNGA 199
           G  +++     VA  +  F  PE   G    AG  F ++  LP  +   L LTG  L+ A
Sbjct: 116 GTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAA 175
Query: 200 EMMACGL 206
                GL
Sbjct: 176 AARDWGL 182

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 10/178 (5%)
Query: 45  RMAILNRPSALNALNTNM-GAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHF 99
           R   LNRP ALNA N  +  A    L  A  +DP +      GSGR F AG D+  +   
Sbjct: 17  RTLTLNRPEALNAFNEALYDATAQALLDA-ADDPQVAVVLLTGSGRGFSAGTDLAEMQAR 75
Query: 100 MNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 159
           +      E K  FR L   I  L    KP +  +NG+ +G GA +               
Sbjct: 76  ITDPNFSEGKFGFRGL---IKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARL 132
Query: 160 ATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKL 216
             P T +G  P+A +S+ L  L G     +L ++   ++  E +  GL       E+L
Sbjct: 133 KCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEEL 190

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 15/190 (7%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           L+RP  LNA++T M  +L+   +  E D ++      G+GRAFC+GGD   L      G 
Sbjct: 21  LDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGD---LTGGDTAGA 77
Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            +      R + S         KP +A ++G  +G G  +++     VA   + F    T
Sbjct: 78  ADAANRVVRAITSLP-------KPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFT 130
Query: 165 LIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 223
            +G  PD GAS  L  L G      +A+T  K++ A     G+ +H + +++   +  ++
Sbjct: 131 RVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDV 190
Query: 224 GKLVTDDPSV 233
            + V+  P++
Sbjct: 191 LRSVSGGPTL 200

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 33  CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAW-ENDPNIGF------GSGR 85
             ++LVE      +  +NRP   NAL+TNM   +++   AW E D + G       G+G 
Sbjct: 8   ARELLVERDGPVVILTMNRPHRRNALSTNM---VSQFAAAWDEIDHDDGIRAAILTGAGS 64
Query: 86  AFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVS 145
           A+C GGD+   +  +  G          T+   + L  T  KP +A +NG  +GGG  + 
Sbjct: 65  AYCVGGDLSDGW-MVRDGSAPPLDPA--TIGKGLLLSHTLTKPLIAAVNGACLGGGCEML 121
Query: 146 IPGTFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGHLGEFLALTGAKLNGAEMMAC 204
                RV+     F  PE   G  P AG+   L   +P      + LTG  L   E    
Sbjct: 122 QQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHF 181
Query: 205 GLATH 209
           GL  H
Sbjct: 182 GLVGH 186

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 7/209 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G     G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDL 130
Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 209
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 210 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 237
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 7/209 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G     G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDL 130
Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 209
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 210 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 237
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 7/209 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G     G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDL 130
Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 209
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 210 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 237
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 7/209 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G     G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL-ALTGAKLNGAEMMACGLATH 209
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNE 190
Query: 210 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 237
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 7/209 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G     G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDL 130
Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 209
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 210 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 237
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 7/209 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G     G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 209
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 210 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 237
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 7/209 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G     G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 209
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 210 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 237
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 7/209 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G     G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 209
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINYGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 210 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 237
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 7/209 (3%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G     G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70
Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130
Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE-FLALTGAKLNGAEMMACGLATH 209
            +   +  F   E   G  P    S  ++   GH    +  +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLYYIMTGKTFGGQKAAEMGLVNE 190
Query: 210 YSVSEKLPLIEEELGK-LVTDDPSVIEAC 237
                +L  +  EL + L+  +P V+ A 
Sbjct: 191 SVPLAQLREVTIELARNLLEKNPVVLRAA 219

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 16/184 (8%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAW---ENDPNIG----FGSGRAFC 88
            LVE + ++ +  +NRPS  NAL+  M   +  + +AW   +NDP+I      G+G  FC
Sbjct: 22  ALVEQRGHTLIVTMNRPSRRNALSGEM---MQIMVEAWDRVDNDPDIRCCILTGAGGYFC 78
Query: 89  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL-GTHL-KPHVAILNGVTMGGGAGVSI 146
           AG D   L     +   +  KD          LL G  L KP +A + G  + GG  +  
Sbjct: 79  AGMD---LKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQ 135
Query: 147 PGTFRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTGAKLNGAEMMACG 205
               RVA     F   E     +P  G++  L   +P  +   L LTG  +  AE    G
Sbjct: 136 GTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMG 195
Query: 206 LATH 209
           L  H
Sbjct: 196 LVGH 199

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP+A NALN  +  +L    +A   D +I      G+ R F AG D+  +        
Sbjct: 20  LNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAE------ 73
Query: 105 LEECKDFFRTLYSFIYLLGTHL----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 160
               KD   TL      L   L    KP +A +NG  +G G  +++     VA     F 
Sbjct: 74  ----KDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFG 129
Query: 161 TPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLAT 208
            PE  +G  P AG +  L    G  L   + L+G  +   +    GL +
Sbjct: 130 LPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVS 178

>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 10/168 (5%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF---GSGRAFCAGGDIVSLYHFMNQGKL 105
            NRP   NA+NT    ++ +  KA   D +I     G+G  + +G D+ +       G  
Sbjct: 41  FNRPKKKNAINTEXYHEIXRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVE 100
Query: 106 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRV--ACGKTVFATPE 163
           E+ K+    L  F+       KP +A++NG  +  G  V++ G F    A  +  F TP 
Sbjct: 101 EKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAV--GISVTLLGLFDAVYASDRATFHTPF 158
Query: 164 TLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 209
           + +G  P+  +S+    +  P    E L + G KL   E  A GL T 
Sbjct: 159 SHLGQSPEGCSSYTFPKIXSPAKATEXL-IFGKKLTAGEACAQGLVTE 205

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 13/152 (8%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----G 82
           S+  D  + +  E   ++    LNRP ALNAL+ +M  +L   +   END  +      G
Sbjct: 4   SMPVDSFDTIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTG 63
Query: 83  SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSF------IYLLGTHLKPHVAILNGV 136
           +GRAFC+G D+  +      GK+   + +  T   +           T  KP +  +NG+
Sbjct: 64  TGRAFCSGADVKEI---PEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGI 120
Query: 137 TMGGGAGVSIPGTFRVACGKTVFATPETLIGF 168
             G G          +A  +  F  P   IG 
Sbjct: 121 CCGAGMDWVTTTDIVIASEQATFFDPHVSIGL 152

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 13/173 (7%)
Query: 82  GSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 140
           G+G +AFCAG D+       N+ ++       RT    +  L    +P +A +NG+ +GG
Sbjct: 61  GAGEKAFCAGADLKE-RAGXNEEQVRHAVSXIRTTXEXVEQLP---QPVIAAINGIALGG 116
Query: 141 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGA 199
           G  +S+   FR+A         ET +   P AG +  L  L G    + L  TG +++  
Sbjct: 117 GTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQ 176
Query: 200 EMMACGLATH----YSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPD 248
           E    GL       + + EK   I E   K+ ++ P  +    E  S+ +  D
Sbjct: 177 EAKEYGLVEFVVPVHLLEEKAIEIAE---KIASNGPIAVRLAKEAISNGIQVD 226

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 5/175 (2%)
Query: 41  KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSL 96
           K +  +  LN P   N L+      L +     E DP +      G G+AF AG D+  L
Sbjct: 6   KGHVAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFL 65
Query: 97  YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 156
                 G  E  +    +L    + + T+ KP VA +NG  + GGAG+++     V   +
Sbjct: 66  ERVTELGAEENYRHSL-SLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEE 124
Query: 157 TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYS 211
                 E  IGF     +   +  +     + L LTG  +   E  A GL    +
Sbjct: 125 ARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIA 179

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 96/252 (38%), Gaps = 34/252 (13%)
Query: 20  SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
           +Q +   S+TD++   +L   +   R   LNRP A NAL+  +  +        E D ++
Sbjct: 14  AQTQGPGSMTDEI---LLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDV 70
Query: 80  GF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 135
                 G+   FCAG D   L        L +    +  L           KP +  +NG
Sbjct: 71  DVVIITGADPVFCAGLD---LKELGGSSALPDISPRWPALT----------KPVIGAING 117
Query: 136 VTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGA 194
             + GG  +++     +A     FA     +G  P  G S  L    G  L   ++LTG 
Sbjct: 118 AAVTGGLELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGD 177
Query: 195 KLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVI 253
            L+ A+ +  GL T     ++L      +   +V ++ + + A L  Y            
Sbjct: 178 YLSAADALRAGLVTEVVPHDQLLGAARAVAASIVGNNQNAVRALLTSY------------ 225
Query: 254 HRIDIVDKCFGL 265
           HRID      GL
Sbjct: 226 HRIDDAQTSAGL 237

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 94/245 (38%), Gaps = 34/245 (13%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----G 82
           S+TD++   +L   +   R   LNRP A NAL+  +  +        E D ++      G
Sbjct: 4   SMTDEI---LLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITG 60
Query: 83  SGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGA 142
           +   FCAG D   L        L +    +  L           KP +  +NG  + GG 
Sbjct: 61  ADPVFCAGLD---LKELGGSSALPDISPRWPALT----------KPVIGAINGAAVTGGL 107
Query: 143 GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEM 201
            +++     +A     FA     +G  P  G S  L    G  L   ++LTG  L+ A+ 
Sbjct: 108 ELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADA 167
Query: 202 MACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD 260
           +  GL T     ++L    + +   +V ++ + + A L  Y            HRID   
Sbjct: 168 LRAGLVTEVVPHDQLLGAAQAVAASIVGNNQNAVRALLASY------------HRIDDAQ 215
Query: 261 KCFGL 265
              GL
Sbjct: 216 TSAGL 220

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 19/177 (10%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN----IGFGSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP+  NA+N     ++ + F     D +    +  G+G+ F AG D++ +   + Q K
Sbjct: 46  LNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGIDLMDMASDILQPK 105
Query: 105 LEEC-------KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
            ++        +D          ++    KP +A ++G  +GGG  +      R      
Sbjct: 106 GDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDA 165
Query: 158 VFATPETLIGFHPDAGASFYLSHLPGHLGEF-----LALTGAKLNGAEMMACGLATH 209
            F   E  +G   D G    L  LP  +G       LA T  K+   E +  GL + 
Sbjct: 166 FFQVKEVDVGLAADVGT---LQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSR 219

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 13/193 (6%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP  LN+ N  M A+L +  K  E D  I      G+GR FCAG D+    +  N   
Sbjct: 30  LNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDL----NDRNVDP 85
Query: 105 LEECKDFFRTLYSF----IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 160
                D   ++  F    +  L    KP +  +NGV  G GA +++ G   +A     F 
Sbjct: 86  TGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFV 145
Query: 161 TPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATHYSVSEKLPLI 219
              + +G  PD G ++ L  + G      LAL G +L+  +    G+       E L   
Sbjct: 146 MAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLADT 205
Query: 220 EEELGKLVTDDPS 232
            ++L + +   P+
Sbjct: 206 AQQLARHLATQPT 218

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           L+ PS  N+    +G +L   ++  ++DP +      G+  AFC+G  I +        +
Sbjct: 22  LHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPR 81
Query: 105 LEECKDFFRT-LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
                DF  + +    + L T   P +A +NG  +G G  +++    R+   +  +A P+
Sbjct: 82  ---NPDFSASPVQPAAFELRT---PVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQ 135
Query: 164 TLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLA 207
              G  PDA A + L  L G  +   L LTGA  +    +  GLA
Sbjct: 136 VRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLA 180

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 85/231 (36%), Gaps = 37/231 (16%)
Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF-------GSGRAFC 88
           +LV+     R   LNRP + NAL+  +    +  F+A  +  N          G+   FC
Sbjct: 11  LLVDTTDRVRTLTLNRPQSRNALSAEL---RSTFFRALSDAQNDDDVDVVIVTGADPVFC 67
Query: 89  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 148
           AG D+  L      G   E  D                KP +  +NG  + GG  +++  
Sbjct: 68  AGLDLKEL------GDTTELPDISPKWPDMT-------KPVIGAINGAAVTGGLELALYC 114
Query: 149 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLA 207
              +A     FA     +G  P  G S  L    G  L   ++LTG  L+  + +  GL 
Sbjct: 115 DILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLV 174
Query: 208 THYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID 257
           T     + L      +   +V ++   + A L+ Y            HRID
Sbjct: 175 TEVVAHDDLLTAARRVAASIVGNNQKAVRALLDSY------------HRID 213

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 13/182 (7%)
Query: 46  MAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMN 101
           +  LNRP  +NA+  ++     ++     +D ++      G+G+ FC+G D  S     +
Sbjct: 36  LVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPH 95
Query: 102 QGKLEECKDFFRT---LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTV 158
            G L +     R+   L   I  L    +P +A +NG  +GGG  +++    RVA     
Sbjct: 96  IGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAY 155
Query: 159 FATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATHYSVSE 214
           F       G         YL  LP  +G   A    LTG  ++  E    GL +    SE
Sbjct: 156 FRAAGINNGLTASELGLSYL--LPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASE 213
Query: 215 KL 216
            L
Sbjct: 214 SL 215

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 28/195 (14%)
Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----G 82
           S+  DL   V VE        I+NRP A NA+N    A L   F  ++ D +       G
Sbjct: 4   SMVSDL---VQVERNGPVTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCG 60
Query: 83  SGRAFCAGGDI-------VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 135
           +G  FCAG D+        +  H    G +   +                 KP +A ++G
Sbjct: 61  NGGTFCAGADLKAFGTAEANAVHRTGPGPMGPSRMMLS-------------KPVIAAVSG 107
Query: 136 VTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF-LALTGA 194
             + GG  +++    RVA    VF       G     G +  L  L GH     + LTG 
Sbjct: 108 YAVAGGLELALWCDLRVAEQDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGR 167
Query: 195 KLNGAEMMACGLATH 209
            +   E +A GLA  
Sbjct: 168 AVQADEALAIGLANR 182

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 15/169 (8%)
Query: 46  MAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMN 101
           +A LN   A NA ++ +   + +L    E D NI      G GR F AG DI        
Sbjct: 18  VATLNHAPA-NAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTE 76
Query: 102 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 161
             +  E     +  +  +       KP +A ++G  +GGG   +     R A        
Sbjct: 77  AKQATELAQLGQVTFERVEKCS---KPVIAAIHGAALGGGLEFAXSCHXRFATESAKLGL 133
Query: 162 PETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 206
           PE  +G  P    +     LP ++G+  A    LT   + GAE +  GL
Sbjct: 134 PELTLGLIPGFAGT---QRLPRYVGKAKACEXXLTSTPITGAEALKWGL 179

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 19/177 (10%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN----IGFGSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP   NA+N     +L + F+    D +    +  G+G+ F +G D++ +   + Q  
Sbjct: 19  LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78
Query: 105 LEEC-------KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
            ++        +D          ++    KP +A ++G  +GGG  +      R      
Sbjct: 79  GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138
Query: 158 VFATPETLIGFHPDAGASFYLSHLPGHLGEF-----LALTGAKLNGAEMMACGLATH 209
            F   E  +G   D G    L  LP  +G       L  T  K+   E +  GL + 
Sbjct: 139 FFQVKEVDVGLAADVGT---LQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSR 192

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 8/141 (5%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF-----GSGRAFCAGGDIVSLYHFMNQG 103
           +NRP   NA       ++   F    +D NIG        G+AFC+GGD     H    G
Sbjct: 27  INRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGDQKVRGHGGYVG 86
Query: 104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
           + E  +     L   I ++    KP +A++ G  +GGG  + +     +A    +F    
Sbjct: 87  EDEIPRLNVLDLQRLIRVI---PKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTG 143
Query: 164 TLIGFHPDAGASFYLSHLPGH 184
             +G       + YL+ + GH
Sbjct: 144 PKVGSFDGGYGAGYLARIVGH 164

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 18/233 (7%)
Query: 49  LNRPSALNALNTNMGAKLNK-LFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKL 105
           L RP   NALN+ +  +L + + KA +      +  G G AFCAG D+ S   F      
Sbjct: 36  LQRPERRNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADL-SGDAF------ 88
Query: 106 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL 165
               D+   L      +     P V  +NG  +G G  +++    RV      F  P + 
Sbjct: 89  --AADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSK 146
Query: 166 IGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG 224
            G   D  +   LS L GH     + L+  KL     +  G+A              E+ 
Sbjct: 147 YGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIA 206
Query: 225 KLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG-LDTVEEIIDSLE 276
           +L    P  I+      +D    ++    H+ ++ DK +G  D +E  +  +E
Sbjct: 207 RLA---PLAIQHAKRVLNDDGAIEEAWPAHK-ELFDKAWGSQDVIEAQVARME 255

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 8/141 (5%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGR-AFCAGGDIVSLYHFMNQG 103
           +NRP   NA      A++   F    +D N+      G G  AFC+GGD     H    G
Sbjct: 28  INRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVG 87
Query: 104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
           + +  +     L   I ++    KP +A++ G  +GGG  +++     +A    +F    
Sbjct: 88  EDQIPRLNVLDLQRLIRIIP---KPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTG 144
Query: 164 TLIGFHPDAGASFYLSHLPGH 184
             +G       S YL+ + GH
Sbjct: 145 PKVGSFDAGYGSGYLARIVGH 165

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 6/164 (3%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRA-FCAGGDIVSLYHFMNQG 103
           L+ P   N L+  +G  L +  +A  N+ +I         RA F +G  +  L    +  
Sbjct: 19  LDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQ 78
Query: 104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
                ++    L   +  + T  K  VA++NG   GGG  + +    R+A  +  F    
Sbjct: 79  SDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENF 138
Query: 164 TLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGL 206
             +G  PD GAS++L  + G+     L L G      E +  GL
Sbjct: 139 HKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGL 182

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 15/167 (8%)
Query: 32  LCNQVLVEGKANSRMAILNRPSALNALN----TNMGAKLNKLFKAWENDPNIGFGSGRAF 87
           + ++VL+E +    +  +NRP A NA+N      + A  ++L  + +    I  G+G  F
Sbjct: 5   MADEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNF 64
Query: 88  CAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP 147
           CAG D+ +      +  L E    F  +           KP +A + G  + GG  + + 
Sbjct: 65  CAGMDLKAFVS--GEAVLSERGLGFTNV--------PPRKPIIAAVEGFALAGGTELVLS 114
Query: 148 GTFRVACGKTVFATPETLIGFHPDAGASFYL-SHLPGHLGEFLALTG 193
               VA     F  PE   G    AG    L + +P  +   LALTG
Sbjct: 115 CDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTG 161

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 52  PSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE 107
           P   NAL+     ++       E D ++G     G+  AFCAG  +  +   +++G +  
Sbjct: 21  PRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIP--LDKG-VAG 77
Query: 108 CKDFFRT----LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
            +D FR      +  I+ +    +P +A +NGV  GGG G+S+     +      F    
Sbjct: 78  VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137
Query: 164 TLIGFHPDAGASFYLSHLPG 183
             IG   D   S+ L+ + G
Sbjct: 138 HTIGIGNDTATSYSLARIVG 157

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 52  PSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE 107
           P   NAL+     ++       E D ++G     G+  AFCAG  +  +   +++G +  
Sbjct: 21  PRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIP--LDKG-VAG 77
Query: 108 CKDFFRT----LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
            +D FR      +  I+ +    +P +A +NGV  GGG G+S+     +      F    
Sbjct: 78  VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137
Query: 164 TLIGFHPDAGASFYLSHLPG 183
             IG   D   S+ L+ + G
Sbjct: 138 HTIGIGNDTATSYSLARIVG 157

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP A NAL+  M A L + F     D ++       SG+AFCAG       H + + +
Sbjct: 41  LNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAG-------HDLKEMR 93
Query: 105 LEECKDFFRTLYS----FIYLLGTHLKPHVAILNGVTMGGG 141
            E  ++++  L++     +  +     P +A ++G+    G
Sbjct: 94  AEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAG 134

>pdb|3M6M|A Chain A, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 305

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 55  LNALNTNMGAKLNKLFKAWENDPNIGFGS-GRAFCAGGDIVSLYHFMNQGKLEECKDF-- 111
           +    TN+G +LN    A    P++   S    F  GGD+      + +G      D+  
Sbjct: 68  ITGYQTNLGQRLNT---AGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQ 124
Query: 112 --FRTLYSFIYLLGTHLKPH-VAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF 168
              R +++F   LG   + H +A++ G  +GGG   ++     +A    +   PE L   
Sbjct: 125 RCVRGVHAFHVGLGA--RAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDL 182
Query: 169 HPDAGA-SFYLSHLPGHLGEFLALTGAKLNGAEMMACGL 206
            P  GA SF    +  HL + + L G   +  +++  GL
Sbjct: 183 FPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGL 221

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 16/189 (8%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LN P   NAL+T + ++L++  +   +DP +       +G  FCAG D   L    + G 
Sbjct: 26  LNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGAD---LSEAGSGGS 82
Query: 105 LEECKDF----FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 160
                D      R + + +  +     P +A ++G    GG G+       VA  ++ FA
Sbjct: 83  PSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFA 142
Query: 161 TPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIE 220
             E  IG  P   +   L  L         LTG K +       GL T    +E L   +
Sbjct: 143 LTEARIGVAPAIISLTLLPKLSARAAARYYLTGEKFDARRAEEIGLITM--AAEDL---D 197
Query: 221 EELGKLVTD 229
             + +LVTD
Sbjct: 198 AAIDQLVTD 206

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 63/165 (38%), Gaps = 9/165 (5%)
Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKLE 106
           LNRP   NALN  + A L        +     +  G G  F AG D+  L        L 
Sbjct: 31  LNRPKKRNALNDGLMAALKDCLTDIPDQIRAVVIHGIGDHFSAGLDLSELRERDATEGLV 90
Query: 107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI 166
             + + R      Y       P +A L G  +GGG  ++     RVA     +A PE   
Sbjct: 91  HSQTWHRVFDKIQYCR----VPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSR 146
Query: 167 GFHPDAGASFYLSHLPG--HLGEFLALTGAKLNGAEMMACGLATH 209
           G     G S  L  L G   + + + LTG   + AE +  G + +
Sbjct: 147 GIFVGGGGSVRLPRLIGVARMADMM-LTGRVYSAAEGVVHGFSQY 190

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 52  PSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE 107
           P   NAL+     ++       E D ++G     G+  AFCAG  +  +   +++G +  
Sbjct: 21  PRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIP--LDKG-VAG 77
Query: 108 CKDFFRT----LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
            +D FR         I+ +    +P +A +NGV  GGG G+S+     +      F    
Sbjct: 78  VRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137
Query: 164 TLIGFHPDAGASFYLSHLPG 183
             IG   D   S+ L+ + G
Sbjct: 138 HTIGIGNDTATSYSLARIVG 157

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	1e-132
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	1e-126
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	1e-29
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	2e-29
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	4e-29
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	5e-29
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	7e-29
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	1e-28
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	2e-28
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	2e-28
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	1e-27
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	1e-27
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	1e-27
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	1e-27
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	2e-27
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	2e-27
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	4e-27
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	3e-26
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	4e-26
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	4e-25
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	5e-25
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	2e-24
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	2e-24
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	3e-24
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	4e-24
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	4e-24
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	9e-24
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	1e-23
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	1e-23
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	2e-23
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	2e-23
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	2e-23
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	1e-22
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	1e-22
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	1e-22
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	3e-22
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	3e-22
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	3e-22
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	4e-22
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	5e-22
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	6e-22
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	7e-22
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	2e-21
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	2e-21
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	2e-21
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-21
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	4e-21
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	5e-21
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	9e-21
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	9e-21
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	1e-20
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	2e-20
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	4e-20
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	5e-20
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	6e-20
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	6e-20
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	1e-19
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	6e-19
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	6e-19
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	8e-19
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	1e-18
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	2e-18
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	3e-18
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	1e-17
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	2e-17
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	7e-17
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	2e-16
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-16
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	4e-16
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	3e-14
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	2e-13
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	2e-11
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score =  381 bits (981), Expect = e-132
 Identities = 122/320 (38%), Positives = 178/320 (55%), Gaps = 16/320 (5%)

Query: 31  DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-R 85
           D   +VL+  K  + +  LNRP  LNAL  NM  ++    K WE DP        G+G +
Sbjct: 3   DAAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGK 62

Query: 86  AFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVS 145
           AFCAGGDI  +       + +    FFR  Y     +G+  KP+VA+++G+TMGGG G+S
Sbjct: 63  AFCAGGDIRVISEAEKAKQ-KIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLS 121

Query: 146 IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACG 205
           + G FRVA  K +FA PET IG  PD G  ++L  L G LG FLALTG +L G ++   G
Sbjct: 122 VHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAG 181

Query: 206 LATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNS---VIHRIDIVDKC 262
           +ATH+  SEKL ++EE+L  L +     I + LE Y      D++    +   +D ++ C
Sbjct: 182 IATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSC 241

Query: 263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLV 322
           F  +TVEEII++L+ +       +    L+++ + SP SLK++LR + EG  +T  E L 
Sbjct: 242 FSANTVEEIIENLQQDG----SSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLT 297

Query: 323 REYRMSLQGVSRLISGDFYE 342
            EYR+S   +      DF+E
Sbjct: 298 MEYRLSQACMRG---HDFHE 314

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score =  368 bits (946), Expect = e-126
 Identities = 94/343 (27%), Positives = 157/343 (45%), Gaps = 22/343 (6%)

Query: 16  LRALSQHRTSSSVTDDLCNQVLVEGKANS-RMAILNRPSALNALNTNMGAKLNKLFKAWE 74
           +  L      S  T ++  Q L         +  LN   ALNAL+ +M   +      W+
Sbjct: 23  MTNLVDKAAHSFATQNVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWK 82

Query: 75  NDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGK---LEECKDFFRTLYSFIYLLGTHL 126
            DP I      GSG +AFCAGGD+ +LYH     K    E  K FF   Y   YLL T+ 
Sbjct: 83  KDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYG 142

Query: 127 KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG 186
           KP +   +G+ MGGG G+    + +V    +  A PE  IG +PD G S++L+ +PG +G
Sbjct: 143 KPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPGKMG 202

Query: 187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDP-----SVIEACLEKY 241
            FL LT   +N A+    GLA HY   +   L+ + +  L   D        ++  + + 
Sbjct: 203 LFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINEL 262

Query: 242 S-DLVYPDKNSVI-HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASP 299
           S  +  P  +SV+    +++D+     ++ +I+  + + ++  ++ W       +   SP
Sbjct: 263 SNQVDIPKGDSVLAESQEMIDRLMA-GSLTDIVTRMSTLST--DEAWLSKACATMLAGSP 319

Query: 300 LSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 342
           +S  ++    + G   +  +C   E  +S+   ++   GDF E
Sbjct: 320 ISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAK---GDFCE 359

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  113 bits (284), Expect = 2e-29
 Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 16/171 (9%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           +  P   NAL+     ++       E D ++G     G+  AFCAG  +           
Sbjct: 18  IKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLRE---IPLDKG 74

Query: 105 LEECKDFFRTLYSFIYLLGTHL----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 160
           +   +D FR    + + +   +    +P +A +NGV  GGG G+S+     +      F 
Sbjct: 75  VAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFV 134

Query: 161 TPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLAT 208
                IG   D   S+ L+ + G    +   L LT   L   E    GL +
Sbjct: 135 CAWHTIGIGNDTATSYSLARIVGMRRAME--LMLTNRTLYPEEAKDWGLVS 183

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  111 bits (281), Expect = 4e-29
 Identities = 59/168 (35%), Positives = 80/168 (47%), Gaps = 14/168 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP  LNA    M A++ K  K    DPN+      G+GRAFCAG D+  +   M+ G 
Sbjct: 18  LNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGD 77

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
           +      +  +   ++ L    KP VA +NG   G G  +++   FR+   K  FA    
Sbjct: 78  VLR--SRYAPMMKALHHLE---KPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFI 132

Query: 165 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 209
            +G  PDAG  +YL  L G    L   LA+ G K+   E  A GLAT 
Sbjct: 133 HVGLVPDAGHLYYLPRLVGRAKALE--LAVLGEKVTAEEAAALGLATK 178

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  112 bits (282), Expect = 5e-29
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 6/166 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF---GSGRAFCAGGDIVSLYHFMNQGKL 105
            NRP   NA+NT M  ++ +  KA   D +I     G+G  + +G D+ +       G  
Sbjct: 41  FNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVE 100

Query: 106 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL 165
           E+ K+    L  F+       KP +A++NG  +G    +        A  +  F TP + 
Sbjct: 101 EKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSH 160

Query: 166 IGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATH 209
           +G  P+  +S+    +       E + + G KL   E  A GL T 
Sbjct: 161 LGQSPEGCSSYTFPKIMSPAKATE-MLIFGKKLTAGEACAQGLVTE 205

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  112 bits (281), Expect = 7e-29
 Identities = 34/196 (17%), Positives = 55/196 (28%), Gaps = 17/196 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           L  P  LNAL       L +L +  + + ++ F     SGR F +G D   +        
Sbjct: 24  LINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDT 83

Query: 105 LEECKD-------FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
            +   +       F             H K  +  LNG  +G  A +        +    
Sbjct: 84  NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK 143

Query: 158 V-FATPETLIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSE 214
           V    P   +G   + G +  L    G     E   +         M   G  +      
Sbjct: 144 VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYE-CLMFNKPFKYDIMCENGFISK--NFN 200

Query: 215 KLPLIEEELGKLVTDD 230
                 E     V ++
Sbjct: 201 MPSSNAEAFNAKVLEE 216

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  110 bits (278), Expect = 1e-28
 Identities = 41/168 (24%), Positives = 62/168 (36%), Gaps = 12/168 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP ALNA N  +     +      +DP +      GSGR F AG D+        +  
Sbjct: 21  LNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAE---MQARIT 77

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
                +        I  L    KP +  +NG+ +G GA +                 P T
Sbjct: 78  DPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFT 137

Query: 165 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 209
            +G  P+A +S+ L  L G        L ++   ++  E +  GL   
Sbjct: 138 SLGVAPEAASSYLLPQLVGRQNAAW--LLMSSEWIDAEEALRMGLVWR 183

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  109 bits (276), Expect = 2e-28
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 19/168 (11%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           L+RP  LNA++T M  +L+   +  E D ++      G+GRAFC+GGD+         G 
Sbjct: 21  LDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTG---GDTAGA 77

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            +      R + S         KP +A ++G  +G G  +++     VA   + F    T
Sbjct: 78  ADAANRVVRAITSL-------PKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFT 130

Query: 165 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 209
            +G  PD GAS  L  L G        +A+T  K++ A     G+ +H
Sbjct: 131 RVGLMPDGGASALLPLLIGRARTSR--MAMTAEKISAATAFEWGMISH 176

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  110 bits (277), Expect = 2e-28
 Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 10/169 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRA-FCAGGDIVSLYHFMNQG 103
           L+ P   N L+  +G  L +  +A  N+ +I         RA F +G  +  L    +  
Sbjct: 19  LDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQ 78

Query: 104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
                ++    L   +  + T  K  VA++NG   GGG  + +    R+A  +  F    
Sbjct: 79  SDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENF 138

Query: 164 TLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 209
             +G  PD GAS++L  + G+   +   L L G      E +  GL   
Sbjct: 139 HKMGISPDLGASYFLPRIIGYEQTMN--LLLEGKLFTSEEALRLGLIQE 185

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  108 bits (271), Expect = 1e-27
 Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 24/171 (14%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           +   S+ N  + ++   L   F     +         G G  F +G        F+ +  
Sbjct: 18  MKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASK----EFLIRKT 73

Query: 105 LEECK--DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 162
             E +  D    +            P +A + G + GGG  + +   F V   ++V+AT 
Sbjct: 74  RGEVEVLDLSGLILDC-------EIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATN 126

Query: 163 ETLIGFHPDAGASFYLSHLPGHLGEF----LALTGAKLNGAEMMACGLATH 209
               GF P    S  L      LG      +  TG    G E+   G+   
Sbjct: 127 FMKYGFTPVGATSLILREK---LGSELAQEMIYTGENYRGKELAERGIPFP 174

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  108 bits (272), Expect = 1e-27
 Identities = 37/167 (22%), Positives = 59/167 (35%), Gaps = 9/167 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           +NRP A NAL   +   + K     + + ++      G+   F AG D+     FM   +
Sbjct: 20  INRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKD---FMGFVQ 76

Query: 105 LEECKDFFRTLY-SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
                   +      +       KP +  + GV +G G  + +      A    +F  P 
Sbjct: 77  NPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPF 136

Query: 164 TLIGFHPDAGASFYLSHLPGHLGEF-LALTGAKLNGAEMMACGLATH 209
             +G  P+ GAS  L    G+     L  T  K N    +  GL   
Sbjct: 137 VSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNE 183

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  108 bits (273), Expect = 1e-27
 Identities = 44/182 (24%), Positives = 68/182 (37%), Gaps = 11/182 (6%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCA 89
           ++V+ K +    I    R +  NALNT +  ++     +   D          +G  FC 
Sbjct: 25  IVVK-KEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLFSAAGSVFCC 82

Query: 90  GGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT 149
           G D       +   +     +   T+ +F+       KP V  +NG  +G GA +     
Sbjct: 83  GLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCD 142

Query: 150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL--GEFLALTGAKLNGAEMMACGLA 207
              A  K  F TP T  G  PD  +S     + G     E + + G KL   E  A GL 
Sbjct: 143 LVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANE-MLIAGRKLTAREACAKGLV 201

Query: 208 TH 209
           + 
Sbjct: 202 SQ 203

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  108 bits (271), Expect = 1e-27
 Identities = 39/182 (21%), Positives = 64/182 (35%), Gaps = 11/182 (6%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF---GSGRAFCAG 90
           ++V  K +    I    + S  N+LN  +  ++         D +        G  FC G
Sbjct: 7   IVVR-KQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCG 65

Query: 91  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
            D +     +   +  E       + +F+       KP +  +NG  +G GA +      
Sbjct: 66  LDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDV 125

Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLA 207
             A  K  F TP T  G  PD  ++     + G        + L+G KL   E    GL 
Sbjct: 126 VWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANE--MLLSGRKLTAQEACGKGLV 183

Query: 208 TH 209
           + 
Sbjct: 184 SQ 185

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  108 bits (271), Expect = 2e-27
 Identities = 47/205 (22%), Positives = 77/205 (37%), Gaps = 15/205 (7%)

Query: 20  SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
           +Q +   S+  D+  ++ V      R+  LNRP +LN++N ++   L +L++   +DP  
Sbjct: 14  AQTQGPGSMVYDMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTA 73

Query: 80  GF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILN 134
                 G+GRAF AGGD     +        + +         I L       P VA +N
Sbjct: 74  RAAVITGAGRAFSAGGDFG---YLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVN 130

Query: 135 GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLAL 191
           G  +G G  +               A P   +G     G                   AL
Sbjct: 131 GPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKE--YAL 188

Query: 192 TGAKLNGAEMMACGLATHYSVSEKL 216
           TG +++    +  GLA H  V++  
Sbjct: 189 TGTRISAQRAVELGLANH--VADDP 211

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  108 bits (271), Expect = 2e-27
 Identities = 48/186 (25%), Positives = 62/186 (33%), Gaps = 14/186 (7%)

Query: 36  VLVEGKANSRMAI-LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAG 90
           VL E        I  NR   LNA   ++ A         E DP I      G GR FCAG
Sbjct: 31  VLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAG 90

Query: 91  GDIVSLYHFMNQGKL---EECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSI 146
             + S        K     +  +    +        T L KP +A +NG  +G G   ++
Sbjct: 91  AYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQAL 150

Query: 147 PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMA 203
               R A     FA      G   + G S+ L  L      L   L L+G      E   
Sbjct: 151 MCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALD--LLLSGRTFLAEEAAQ 208

Query: 204 CGLATH 209
            GL   
Sbjct: 209 LGLVKE 214

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  107 bits (269), Expect = 4e-27
 Identities = 48/169 (28%), Positives = 66/169 (39%), Gaps = 10/169 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           L RP  LNAL     A L  L         +      G GR FC+GGD+  +        
Sbjct: 32  LARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMD 91

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
                DF R     +  +     P +A L+GV  G GA +++   FRVA   T FA   T
Sbjct: 92  TARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFT 151

Query: 165 LIGFHP-DAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 209
            +G    D GA++ L  + G        L + G  +   E    GL + 
Sbjct: 152 RVGLSGGDMGAAYLLPRVVGLGHATR--LLMLGDTVRAPEAERIGLISE 198

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  104 bits (261), Expect = 3e-26
 Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           L+ PS  N+    +G +L   ++  ++DP +      G+  AFC+G  I +        +
Sbjct: 22  LHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPR 81

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
             +       +    + L     P +A +NG  +G G  +++    R+   +  +A P+ 
Sbjct: 82  NPD--FSASPVQPAAFELR---TPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQV 136

Query: 165 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 209
             G  PDA A + L  L G        L LTGA  +    +  GLA  
Sbjct: 137 RFGVAPDALAHWTLPRLVGTAVAAE--LLLTGASFSAQRAVETGLANR 182

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  104 bits (262), Expect = 4e-26
 Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 12/168 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           L+ P  LN++   M   L  ++   + DP++      G G+AF +GG    +      G 
Sbjct: 29  LDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDE--TIGD 85

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            E      R     +  L    KP V+ + G  +G G  V++     VA          T
Sbjct: 86  YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHT 145

Query: 165 LIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLATH 209
            +G      A+     L G          LT   L+G E    GL + 
Sbjct: 146 KLGVAAGDHAAICWPLLVGMAKAKY--YLLTCETLSGEEAERIGLVST 191

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  101 bits (254), Expect = 4e-25
 Identities = 33/181 (18%), Positives = 52/181 (28%), Gaps = 11/181 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           +         + I  R   LNA+   +   L ++++  E    +      G G  F AGG
Sbjct: 12  LAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGG 71

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
               +     +   E     F      +       +P VA +  V +G G  +++     
Sbjct: 72  SFGLIEEM--RASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIA 129

Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGLAT 208
           V    T        +G      A      L G          L    L G E    GL  
Sbjct: 130 VVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKY--HLLLNEPLTGEEAERLGLVA 187

Query: 209 H 209
            
Sbjct: 188 L 188

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  101 bits (253), Expect = 5e-25
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP+  NA +  M  +L      +E D ++     +G G  F AG D+ S+   +  G 
Sbjct: 24  LNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGA 83

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
               +            L    KP +  ++G  +  G  +++     +A     FA  E 
Sbjct: 84  SLTPEGGINPWQVDGRQLS---KPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEV 140

Query: 165 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 209
             G +P  GA+      P   G   A    LT    +  E    G+   
Sbjct: 141 NRGIYPFGGATI---RFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQE 186

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score = 99.1 bits (248), Expect = 2e-24
 Identities = 36/183 (19%), Positives = 60/183 (32%), Gaps = 16/183 (8%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSG-RAFCAG 90
           V  E     R+  L+ P+  N  +  +   +         D ++     +G   R+F AG
Sbjct: 2   VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAG 61

Query: 91  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
           GD   +        +EE  D    LY  +  +    KP +A ++G  +G G   ++    
Sbjct: 62  GDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVN---KPTIAAVDGYAIGMGFQFALMFDQ 118

Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 206
           R+      F  PE   G     GA+     L    G             L+    +   L
Sbjct: 119 RLMASTANFVMPELKHGIGCSVGAAI----LGFTHGFSTMQEIIYQCQSLDAPRCVDYRL 174

Query: 207 ATH 209
              
Sbjct: 175 VNQ 177

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 99.2 bits (248), Expect = 2e-24
 Identities = 40/183 (21%), Positives = 61/183 (33%), Gaps = 16/183 (8%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGG 91
           V  E + +  +  L+R    NA ++ M A L      +E          F  G  F AG 
Sbjct: 14  VTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGL 73

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 150
           D++     +          +         ++     KP V  + G     G  + +    
Sbjct: 74  DLME----LAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADI 129

Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 206
            VA   T FA  E L G  P  G++      P   G   A    LTG + +  E +   L
Sbjct: 130 AVAARGTRFAHLEVLRGIPPLGGSTV---RFPRAAGWTDAMRYILTGDEFDADEALRMRL 186

Query: 207 ATH 209
            T 
Sbjct: 187 LTE 189

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 98.8 bits (247), Expect = 3e-24
 Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 24/182 (13%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           +LV+     R   LNRP + NAL+  + +   +     +ND ++      G+   FCAG 
Sbjct: 11  LLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGL 70

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           D+       +  +L +    +  +           KP +  +NG  + GG  +++     
Sbjct: 71  DLKE---LGDTTELPDISPKWPDMT----------KPVIGAINGAAVTGGLELALYCDIL 117

Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 207
           +A     FA     +G  P  G S  L      +G  LA    LTG  L+  + +  GL 
Sbjct: 118 IASENAKFADTHARVGLMPTWGLSVRLPQK---VGVGLARRMSLTGDYLSAQDALRAGLV 174

Query: 208 TH 209
           T 
Sbjct: 175 TE 176

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score = 98.9 bits (247), Expect = 4e-24
 Identities = 40/197 (20%), Positives = 65/197 (32%), Gaps = 16/197 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
            +RP A N +N  +  +  ++    E    +      G    FC G D   +Y  M +G 
Sbjct: 22  FHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRG- 79

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
             +       LY     L T     ++ + G    GG G        +A     F+  E 
Sbjct: 80  -RKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSEL 138

Query: 165 LIGFHPDAGASFYLSHLPGHLGEF----LALTGAKLNGAEMMACGLATHYSVSEKLPLIE 220
           L G +P     F    L   +G      + L    ++  E    GL      +E   L+ 
Sbjct: 139 LFGLYPACVLPF----LIRRIGRQKAHYMTLMTKPISVQEASEWGLI-DAFDAESDVLLR 193

Query: 221 EELGKLVTDDPSVIEAC 237
           + L +L   +   I   
Sbjct: 194 KHLLRLRRLNKKGIAHY 210

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score = 99.2 bits (248), Expect = 4e-24
 Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 13/169 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSL--YHFMNQ 102
           LNRP  +NA+  ++     ++     +D ++      G+G+ FC+G D  S      +  
Sbjct: 39  LNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGG 98

Query: 103 GKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 161
                       L   + L    + +P +A +NG  +GGG  +++    RVA     F  
Sbjct: 99  LTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRA 158

Query: 162 PETLIGFHP-DAGASFYLSHLPGH---LGEFLALTGAKLNGAEMMACGL 206
                G    + G S+ L    G        + LTG  ++  E    GL
Sbjct: 159 AGINNGLTASELGLSYLLPRAIGTSRASD--IMLTGRDVDADEAERIGL 205

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 97.3 bits (243), Expect = 9e-24
 Identities = 31/167 (18%), Positives = 52/167 (31%), Gaps = 11/167 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           ++         +    +L   F     D         G+G +FC   D  S     N G 
Sbjct: 31  VHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTS----FNLGT 86

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA-TPE 163
             +  +        +  L +   P +A +NG  +     + +     +A     F   P 
Sbjct: 87  PHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGP-VTNAPEIPVMSDIVLAAESATFQDGPH 145

Query: 164 TLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 209
              G  P  GA     H+ G   G +  LTG +L+    +  G    
Sbjct: 146 FPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNE 192

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 97.3 bits (243), Expect = 1e-23
 Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 13/194 (6%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           V VE +      ILNRP   NA++  +  ++  + +  E DP  G     G+G A+ AG 
Sbjct: 11  VKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGM 70

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIY-LLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
           D+   +  ++ G     +   R    + + LL  + KP +A++NG   GGG    +    
Sbjct: 71  DLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDL 130

Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACGLATH 209
            +   +  F   E   G  P    S  ++   GH       +TG    G +    GL   
Sbjct: 131 AICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGL--- 187

Query: 210 YSVSEKLPLIEEEL 223
             V+E +PL   +L
Sbjct: 188 --VNESVPL--AQL 197

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 96.9 bits (242), Expect = 1e-23
 Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 19/197 (9%)

Query: 20  SQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
               T  + T    + + +          L RP   NALN+ +  +L +  +    D + 
Sbjct: 7   HHMGTLEAQTQGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRK-AGDGSA 65

Query: 80  GF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG 135
                 G G AFCAG D+             +  D    L+  +        P V  +NG
Sbjct: 66  RAIVLTGQGTAFCAGADLSG----DAFA--ADYPDRLIELHKAMDASP---MPVVGAING 116

Query: 136 VTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH---LGEFLALT 192
             +G G  +++    RV      F  P +  G   D  +   LS L GH       + L+
Sbjct: 117 PAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARA--MLLS 174

Query: 193 GAKLNGAEMMACGLATH 209
             KL     +  G+A  
Sbjct: 175 AEKLTAEIALHTGMANR 191

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 96.1 bits (240), Expect = 2e-23
 Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 13/167 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGK 104
           ++    +N L   M   LN+   A + D N+G     G+ R F  G D+      +  G+
Sbjct: 20  MDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDL----KVLTSGE 73

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            +   D  R  +   Y L ++ KP V    G  +  GA +   G  RVA         E 
Sbjct: 74  AKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEV 133

Query: 165 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 209
            IG      A   L     P    +  A       G   +A G    
Sbjct: 134 AIGMTIPYAAMEVLKLRLTPSAYQQ-AAGLAKTFFGETALAAGFIDE 179

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 96.5 bits (241), Expect = 2e-23
 Identities = 26/167 (15%), Positives = 44/167 (26%), Gaps = 10/167 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           ++   +          +    F     D +       GSG A+ A  D        +   
Sbjct: 39  MHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFP---SLGDVTN 95

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA-TPE 163
             E    +      +  L     P ++ +NG  +       +     +A   TVF   P 
Sbjct: 96  PREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHSE-YILTTDIILASENTVFQDMPH 154

Query: 164 TLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH 209
              G  P  G         G   G +   T  KL   +     +   
Sbjct: 155 LNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHE 201

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 96.4 bits (241), Expect = 2e-23
 Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 13/169 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LN P   N L+  M   L +     E DP +      G G+AF AG D+  L   + +  
Sbjct: 14  LNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER-VTELG 72

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            EE      +L    + + T+ KP VA +NG  + GGAG+++     V   +      E 
Sbjct: 73  AEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEV 132

Query: 165 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 209
            IGF   A  S  L      +GE  A    LTG  +   E  A GL   
Sbjct: 133 KIGFVA-ALVSVILVRA---VGEKAAKDLLLTGRLVEAREAKALGLVNR 177

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 94.9 bits (237), Expect = 1e-22
 Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 18/203 (8%)

Query: 18  ALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDP 77
           +++ + + +    +     LVE + ++ +  +NRPS  NAL+  M   + + +   +NDP
Sbjct: 4   SMAPNTSETPANGESGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDP 63

Query: 78  NIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTHL-KPHV 130
           +I      G+G  FCAG D+ +      +    +      +        L G  L KP +
Sbjct: 64  DIRCCILTGAGGYFCAGMDLKA----ATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLI 119

Query: 131 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 190
           A + G  + GG  +      RVA     F   E     +P  G++     L   +   +A
Sbjct: 120 AAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAV---RLVRQIPYTVA 176

Query: 191 ----LTGAKLNGAEMMACGLATH 209
               LTG  +  AE    GL  H
Sbjct: 177 CDLLLTGRHITAAEAKEMGLVGH 199

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 94.6 bits (236), Expect = 1e-22
 Identities = 48/193 (24%), Positives = 73/193 (37%), Gaps = 21/193 (10%)

Query: 27  SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FG 82
           S+++++   V VE        ILNRP A NA++    A L   F  ++ DP       +G
Sbjct: 4   SMSEEMQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWG 63

Query: 83  SGRAFCAGGDIVSLYHFMNQGKLEEC--KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 140
               FCAG D+      M   +  E           S + L     KP +A ++G  + G
Sbjct: 64  DNGTFCAGADL----KAMGTDRGNELHPHGPGPMGPSRLRL----SKPVIAAISGHAVAG 115

Query: 141 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKL 196
           G  +++    RV     V        G     G +     LP  +G   A    LTG  +
Sbjct: 116 GIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTI---RLPRLIGHSRAMDLILTGRPV 172

Query: 197 NGAEMMACGLATH 209
           +  E +  GL   
Sbjct: 173 HANEALDIGLVNR 185

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 94.1 bits (235), Expect = 1e-22
 Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 19/183 (10%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           +    +    +  L RP  LNAL+  M A++    +A++ +  +      G GRAF AG 
Sbjct: 7   IAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGA 66

Query: 92  DIVSLYHFMNQGKLEECKDF-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
           DI      M +      +       +  + ++     P +A +NG+ +GGG  +++    
Sbjct: 67  DIQE----MAKDDPIRLEWLNQFADWDRLSIVK---TPMIAAVNGLALGGGFELALSCDL 119

Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 206
            VA     F  PE  +G  P AG +  L+ L   +G   A     TGA+++  E    G+
Sbjct: 120 IVASSAAEFGFPEVNLGVMPGAGGTQRLTKL---IGPKRALEWLWTGARMSAKEAEQLGI 176

Query: 207 ATH 209
              
Sbjct: 177 VNR 179

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 93.3 bits (233), Expect = 3e-22
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 19/185 (10%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFC 88
           + V+      +    LNR    N+L+  +  +L  +      + N       G+G +AFC
Sbjct: 10  ISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFC 68

Query: 89  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 148
           AG D+            E+ +     + + + ++    +P +A +NG+ +GGG  +S+  
Sbjct: 69  AGADLKE----RAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLAC 124

Query: 149 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMAC 204
            FR+A         ET +   P AG +  L  L   +G   A     TG +++  E    
Sbjct: 125 DFRIAAESASLGLTETTLAIIPGAGGTQRLPRL---IGVGRAKELIYTGRRISAQEAKEY 181

Query: 205 GLATH 209
           GL   
Sbjct: 182 GLVEF 186

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score = 93.5 bits (233), Expect = 3e-22
 Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 11/166 (6%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDI--VSLYHFMNQ 102
           L R  A + L+  M A L+   +    D ++      G GR FCAG D+  +  +     
Sbjct: 22  LGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPD 80

Query: 103 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 162
                  D F    + +  L    KP +A++ G+    G  +        A     F  P
Sbjct: 81  EGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLP 140

Query: 163 ETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 206
               G      A   +S +     + E +ALTGA  +    +A GL
Sbjct: 141 GVQNGGFCTTPAV-AVSRVIGRRAVTE-MALTGATYDADWALAAGL 184

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 93.4 bits (233), Expect = 3e-22
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 9/167 (5%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           +NR S  NA +  +  ++     +  ND N+       +G+ F AG D+  +    N  +
Sbjct: 19  MNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTE 78

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            EE  +    L + +Y +    KP +A++ G   GGGAG++      +A     F   E 
Sbjct: 79  -EENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEV 137

Query: 165 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 209
            +G  P A  S Y+            L ++    +     +  L  H
Sbjct: 138 KLGLIP-AVISPYVVRAIGERAAKM-LFMSAEVFDATRAYSLNLVQH 182

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 93.0 bits (232), Expect = 4e-22
 Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 20/203 (9%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDI--------VSL 96
           LN P   NAL+T + ++L++  +   +DP +       +G  FCAG D+         S 
Sbjct: 26  LNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSS 85

Query: 97  YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK 156
            + M   +  E     R +            P +A ++G    GG G+       VA  +
Sbjct: 86  AYDMAVERAREMAALMRAIVES-------RLPVIAAIDGHVRAGGFGLVGACDIAVAGPR 138

Query: 157 TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 216
           + FA  E  IG  P   +   L  L         LTG K +       GL    +  +  
Sbjct: 139 SSFALTEARIGVAPAIISLTLLPKLSARAAARYYLTGEKFDARRAEEIGLI-TMAAEDLD 197

Query: 217 PLIEEELGKLVTDDPSVIEACLE 239
             I++ +  +    P  + A   
Sbjct: 198 AAIDQLVTDVGRGSPQGLAASKA 220

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 93.0 bits (232), Expect = 5e-22
 Identities = 43/187 (22%), Positives = 68/187 (36%), Gaps = 20/187 (10%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP   NA+N     +L + F+    D +       G+G+ F +G D++ +   + Q  
Sbjct: 19  LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78

Query: 105 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
            ++       L   I              KP +A ++G  +GGG  +      R      
Sbjct: 79  GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138

Query: 158 VFATPETLIGFHPDAGASFYLSHLPGHLG---EFLALTGAKLNGAEMMACGLATHYSVSE 214
            F   E  +G   D G    L  + G+     E L  T  K+   E +  GL     VS 
Sbjct: 139 FFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNE-LTFTARKMMADEALDSGL-----VSR 192

Query: 215 KLPLIEE 221
             P  + 
Sbjct: 193 VFPDKDV 199

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 92.6 bits (231), Expect = 6e-22
 Identities = 42/183 (22%), Positives = 68/183 (37%), Gaps = 22/183 (12%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           VLVE +    +  +NRP A N++N  +   L       + D  +      G+G +FCAG 
Sbjct: 17  VLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGM 76

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 150
           D+ +      +G      +        +        KP +A + G  + GG  +++    
Sbjct: 77  DLKA----FARG------ENVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDL 126

Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 206
            VA   + F  PE   G     G       LP  +   +A    LTG  L+     A G+
Sbjct: 127 IVAARDSAFGIPEVKRGLVAGGGGLL---RLPERIPYAIAMELALTGDNLSAERAHALGM 183

Query: 207 ATH 209
              
Sbjct: 184 VNV 186

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 92.6 bits (231), Expect = 7e-22
 Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 17/182 (9%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           +LVE      +  LNRP ALNALN+ +  ++       ++DP+IG     GS +AF AG 
Sbjct: 27  ILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGA 86

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           DI       +    +     F   +  +  +     P +A + G  +GGG  +++     
Sbjct: 87  DIKE---MADLTFADAFTADFFATWGKLAAVR---TPTIAAVAGYALGGGCELAMMCDVL 140

Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 207
           +A     F  PE  +G  P  G S  L+     +G+  A    LTG  ++ AE    GL 
Sbjct: 141 IAADTAKFGQPEIKLGVLPGMGGSQRLTRA---IGKAKAMDLILTGRTMDAAEAERSGLV 197

Query: 208 TH 209
           + 
Sbjct: 198 SR 199

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 91.1 bits (227), Expect = 2e-21
 Identities = 29/198 (14%), Positives = 55/198 (27%), Gaps = 16/198 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           L+RP   NAL+  +   L     A   +  +      G+GR F AG D            
Sbjct: 22  LSRPEKRNALSAELVEALIDGVDAAHRE-QVPLLVFAGAGRNFSAGFDF----TDYETQS 76

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
             +       +   +  +       +A+ +G   G G  +     +R    +  F  P  
Sbjct: 77  EGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGL 136

Query: 165 LIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH-YSVSEKLPLIEE 221
             G       +     +         +  +    +  E    G      + ++   LI+ 
Sbjct: 137 KFGLVL---GTRRFRDIVGADQALS-ILGSARAFDADEARRIGFVRDCAAQAQWPALIDA 192

Query: 222 ELGKLVTDDPSVIEACLE 239
                   DP+       
Sbjct: 193 AAEAATALDPATRATLHR 210

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 91.4 bits (228), Expect = 2e-21
 Identities = 51/183 (27%), Positives = 71/183 (38%), Gaps = 16/183 (8%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           +LVE      +  +NRP   NAL+TNM ++    +   ++D  I      G+G A+C GG
Sbjct: 11  LLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGG 70

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 150
           D+          +                LL   L KP +A +NG  +GGG  +      
Sbjct: 71  DLSD----GWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDI 126

Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 206
           RV+     F  PE   G  P AG+   L      +    A    LTG  L   E    GL
Sbjct: 127 RVSDEHATFGLPEVQRGLVPGAGSMVRLKRQ---IPYTKAMEMILTGEPLTAFEAYHFGL 183

Query: 207 ATH 209
             H
Sbjct: 184 VGH 186

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score = 91.5 bits (228), Expect = 2e-21
 Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 11/165 (6%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQG 103
            LNRP A NAL+  M A L + F     D ++       SG+AFCAG D+  +     + 
Sbjct: 40  TLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEM---RAEP 96

Query: 104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
             E  +  F      +  +     P +A ++G+    G  +       VA     FA   
Sbjct: 97  SREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSG 156

Query: 164 TLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 206
             +G          LS         E + +TG  ++  +    GL
Sbjct: 157 INVGLFCSTPGV-ALSRNVGRKAAFE-MLVTGEFVSADDAKGLGL 199

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 92.2 bits (229), Expect = 3e-21
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 22/193 (11%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGR---- 85
           +      +        NRP   NA   +   +L ++       P++G     G+G     
Sbjct: 57  ITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKD 116

Query: 86  ---AFCAGGDI---VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL----KPHVAILNG 135
              AFC+GGD        +    G   +  D  R     I  +   +    K  + ++NG
Sbjct: 117 GGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNG 176

Query: 136 VTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLPGH-LGEFLALTG 193
              GGG  + +     +A  +   F   +  +G       S YL+   G      +   G
Sbjct: 177 WAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLG 236

Query: 194 AKLNGAEMMACGL 206
                 +M   G 
Sbjct: 237 RTYTAEQMHQMGA 249

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 90.3 bits (225), Expect = 4e-21
 Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 16/170 (9%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQG 103
           +NR    N+L+ N+   L+K   A ++D  +            FCAG D+        + 
Sbjct: 27  INRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADL----KERAKM 82

Query: 104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
              E   F   + + I  +     P +A ++G+ +GGG  +++    RVA         E
Sbjct: 83  SSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVE 142

Query: 164 TLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 209
           T +   P  G +  L      +G  LA     +   L+G E  A GL +H
Sbjct: 143 TKLAIIPGGGGTQRLPRA---IGMSLAKELIFSARVLDGKEAKAVGLISH 189

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 91.4 bits (227), Expect = 5e-21
 Identities = 37/193 (19%), Positives = 59/193 (30%), Gaps = 36/193 (18%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQG- 103
            NRP   NA+  +   +L+ L +  + DP++      G G  FCAG D+ +     +   
Sbjct: 50  FNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAG 109

Query: 104 -------------------------KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTM 138
                                                      L    KP V  ++G  +
Sbjct: 110 GGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCV 169

Query: 139 GGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKL 196
            GG  +++     +A        P   +   P AG     +H          L  TG  +
Sbjct: 170 AGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKR-LLFTGDCI 225

Query: 197 NGAEMMACGLATH 209
            GA+    GLA  
Sbjct: 226 TGAQAAEWGLAVE 238

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 89.1 bits (222), Expect = 9e-21
 Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 17/169 (10%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP ALNAL   +  +LN+  + +E DP +G     G  +AF AG DI       N+  
Sbjct: 22  LNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKE---MQNRTF 78

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            +     F + +  I  +    KP +A +NG  +GGG  +++      A  K  F  PE 
Sbjct: 79  QDCYSGKFLSHWDHITRIK---KPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEI 135

Query: 165 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 209
           L+G  P AG +  L+     +G+ LA    LTG +++  +    GL + 
Sbjct: 136 LLGTIPGAGGTQRLTRA---VGKSLAMEMVLTGDRISAQDAKQAGLVSK 181

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 89.1 bits (222), Expect = 9e-21
 Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 23/183 (12%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           VL+E +    +  +NRP A NA+N  +   L       ++  ++      G+G  FCAG 
Sbjct: 9   VLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGM 68

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGTF 150
           D+ +       G+              +        KP +A + G  + GG  + +    
Sbjct: 69  DLKA----FVSGEAVLS-------ERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDL 117

Query: 151 RVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 206
            VA     F  PE   G    AG       LP  +   +A    LTG      +    G 
Sbjct: 118 VVAGRSAKFGIPEVKRGLVAGAGGLL---RLPNRIPYQVAMELALTGESFTAEDAAKYGF 174

Query: 207 ATH 209
              
Sbjct: 175 INR 177

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 88.7 bits (221), Expect = 1e-20
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 22/185 (11%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCA 89
           +         + +  L+RP ALNALN  + A++    + ++ D  IG     GS RAF A
Sbjct: 11  IATSRPVA-GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAA 69

Query: 90  GGDIVSLYHFMNQGKLEECKDF-FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 148
           G DI      M      + ++    + +  +  +    KP VA + G  +GGG  +++  
Sbjct: 70  GADIAE----MVTLTPHQARERNLLSGWDSLTQVR---KPIVAAVAGYALGGGCELAMLC 122

Query: 149 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMAC 204
              +A     F  PE  +G  P  G +  L+     +G+  A    LTG  L   E    
Sbjct: 123 DLVIAADTARFGQPEITLGILPGLGGTQRLTRA---VGKAKAMDLCLTGRSLTAEEAERV 179

Query: 205 GLATH 209
           GL + 
Sbjct: 180 GLVSR 184

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 88.8 bits (221), Expect = 2e-20
 Identities = 40/178 (22%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP ALNAL+ +M  +L   +   END  +      G+GRAFC+G D+      + +  
Sbjct: 26  LNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKE----IPEDG 81

Query: 105 LEECKDFFRTLYSFIYLLGTHL-------KPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
               +  + + Y                 KP +  +NG+  G G          +A  + 
Sbjct: 82  KVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQA 141

Query: 158 VFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAK--LNGAEMMACGLATH 209
            F  P   IG             +   L   +A    L G    ++       GL + 
Sbjct: 142 TFFDPHVSIGLVAGRELVR----VSRVLPRSIALRMALMGKHERMSAQRAYELGLISE 195

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 87.6 bits (218), Expect = 4e-20
 Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 15/182 (8%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGG 91
           + V  + +  +A LN   A NA+++ +   + +L    E D NI      G GR F AG 
Sbjct: 8   LSVRVEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGA 66

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           DI          +  E     +  +  +       KP +A ++G  +GGG   ++    R
Sbjct: 67  DIKEFTSVTEAKQATELAQLGQVTFERVEKCS---KPVIAAIHGAALGGGLEFAMSCHMR 123

Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 207
            A        PE  +G  P    +  L      +G+  A    LT   + GAE +  GL 
Sbjct: 124 FATESAKLGLPELTLGLIPGFAGTQRLPRY---VGKAKACEMMLTSTPITGAEALKWGLV 180

Query: 208 TH 209
             
Sbjct: 181 NG 182

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 87.7 bits (218), Expect = 5e-20
 Identities = 37/174 (21%), Positives = 61/174 (35%), Gaps = 22/174 (12%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP A NA N  +  +L+  +     D ++       +G+ F AG D+           
Sbjct: 35  LNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRG----GGPVP 90

Query: 105 LEECKDFFRTLYSFIYLLGTHL-----KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF 159
            +   +F     S  YL  +       KP +A + G  + GG  +  P    +A    +F
Sbjct: 91  DKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALF 150

Query: 160 ATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 209
           + P  L+            +     LG   A     TG  +   E+   G+   
Sbjct: 151 SDPVVLMDI--GGVEYHGHTWE---LGPRKAKEILFTGRAMTAEEVAQTGMVNR 199

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 87.2 bits (217), Expect = 6e-20
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 19/184 (10%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAG 90
            L E + N  +  +NRP A NA+N  +   +    +  ++DP +      G+G ++FCAG
Sbjct: 11  ALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAG 70

Query: 91  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-KPHVAILNGVTMGGGAGVSIPGT 149
            D+ +    + + +     D     + F   +   + KP +A +NG  +GGG  +++   
Sbjct: 71  ADLKA----IARRENLYHPDHPE--WGFAGYVRHFIDKPTIAAVNGTALGGGTELALASD 124

Query: 150 FRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACG 205
             VA  +  F  PE   G    AG  F    +   L   +A    LTG  L+ A     G
Sbjct: 125 LVVADERAQFGLPEVKRGLIAAAGGVFR---IAEQLPRKVAMRLLLTGEPLSAAAARDWG 181

Query: 206 LATH 209
           L   
Sbjct: 182 LINE 185

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 87.2 bits (217), Expect = 6e-20
 Identities = 44/169 (26%), Positives = 62/169 (36%), Gaps = 17/169 (10%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGK 104
           LNRP   NALN  + A L       +    I      G G  F AG D+      + +  
Sbjct: 31  LNRPKKRNALNDGLMAALKDCLT--DIPDQIRAVVIHGIGDHFSAGLDLSE----LRERD 84

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
             E     +T +     +     P +A L G  +GGG  ++     RVA     +A PE 
Sbjct: 85  ATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEG 144

Query: 165 LIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 209
             G     G S  L  L   +G        LTG   + AE +  G + +
Sbjct: 145 SRGIFVGGGGSVRLPRL---IGVARMADMMLTGRVYSAAEGVVHGFSQY 190

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 86.0 bits (214), Expect = 1e-19
 Identities = 32/185 (17%), Positives = 56/185 (30%), Gaps = 21/185 (11%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN-----IGFGSGRAFCAG 90
           V V       +   N    LNAL+      L +                     + F AG
Sbjct: 6   VNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAG 65

Query: 91  GDIVSLYHFMNQGKLEECK--DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 148
            DI    H +  G  +     D  R +   I       KP ++++ G   GG   + +  
Sbjct: 66  HDI----HELPSGGRDPLSYDDPLRQITRMIQKFP---KPIISMVEGSVWGGAFEMIMSS 118

Query: 149 TFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMAC 204
              +A   + F+     +G   +      L+      G  +      T + +     +A 
Sbjct: 119 DLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRD---AGFHIVKELIFTASPITAQRALAV 175

Query: 205 GLATH 209
           G+  H
Sbjct: 176 GILNH 180

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 84.5 bits (210), Expect = 6e-19
 Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 15/170 (8%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQG 103
           +NRP   NA      A++   F    +D N+      G G  AFC+GGD     H    G
Sbjct: 28  INRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVG 87

Query: 104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
           + +  +     L   I ++    KP +A++ G  +GGG  +++     +A    +F    
Sbjct: 88  EDQIPRLNVLDLQRLIRIIP---KPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTG 144

Query: 164 TLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 209
             +G       S YL+ +   +G   A        + N  E +  GL   
Sbjct: 145 PKVGSFDAGYGSGYLARI---VGHKKAREIWYLCRQYNAQEALDMGLVNT 191

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 84.5 bits (210), Expect = 6e-19
 Identities = 40/182 (21%), Positives = 64/182 (35%), Gaps = 16/182 (8%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGG 91
           V V         +++RP   NA+   +  ++           +IG    FG    F AG 
Sbjct: 26  VSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGD 84

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           D+      +      E     R     I  +    KP VA + G  +G G  +++   +R
Sbjct: 85  DMPE----LRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWR 140

Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLA 207
           V+     F   E L G  P  G    L+ +   +G   A     +G   +  E +A GL 
Sbjct: 141 VSGDNVKFGATEILAGLIPGGGGMGRLTRV---VGSSRAKELVFSGRFFDAEEALALGLI 197

Query: 208 TH 209
             
Sbjct: 198 DD 199

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score = 84.2 bits (209), Expect = 8e-19
 Identities = 36/187 (19%), Positives = 64/187 (34%), Gaps = 11/187 (5%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGG 91
                    R  +L+ P   N L+  M   L        +  ++        G  F +G 
Sbjct: 35  TSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGH 94

Query: 92  DIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 151
           D+  L     +   +   + F+T    +  +  H  P +A++NG+    G  +       
Sbjct: 95  DLKEL---TEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIA 151

Query: 152 VACGKTVFATPETLIGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGLATH 209
           VA  K+ FATP   +G          L+         E +  TG  ++  E +  GL + 
Sbjct: 152 VASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALE-MLFTGEPISAQEALLHGLLSK 209

Query: 210 YSVSEKL 216
                +L
Sbjct: 210 VVPEAEL 216

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 85.7 bits (212), Expect = 1e-18
 Identities = 40/203 (19%), Positives = 66/203 (32%), Gaps = 33/203 (16%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG-------------FG 82
           V +E +       + R   LNA +      +         DP +              + 
Sbjct: 169 VHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYR 228

Query: 83  SGRAFCAGGDI-------VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL-----KPHV 130
             R F AG ++       +SL  F+ + +L       R + +     G        KP V
Sbjct: 229 GKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWV 288

Query: 131 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 190
           A ++G  +GGGA + +     +A     F+ P    G  P A        L    G  ++
Sbjct: 289 AAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLR----LGRFAGPRVS 344

Query: 191 ----LTGAKLNGAEMMACGLATH 209
               L G ++   E  A  L   
Sbjct: 345 RQVILEGRRIWAKEPEARLLVDE 367

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 82.3 bits (204), Expect = 2e-18
 Identities = 26/163 (15%), Positives = 44/163 (26%), Gaps = 12/163 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLE 106
           LN    +NA++ ++    N      E D  I    G       G D+      M     E
Sbjct: 21  LNNG-KVNAISPDVIIAFNAALDQAEKDRAIVIVTGQPGILSGGYDL----KVM-TSSAE 74

Query: 107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETL 165
              +      +    + +H  P +    G  +  GA + +   +R+   G       E  
Sbjct: 75  AAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQ 134

Query: 166 IGFHPDAGASFYLSHL--PGHLGEFLALTGAKLNGAEMMACGL 206
           IG                         +     +    MA G 
Sbjct: 135 IGMTMHHAGIELARDRLRKSAFNR-SVINAEMFDPEGAMAAGF 176

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 82.6 bits (205), Expect = 3e-18
 Identities = 32/188 (17%), Positives = 54/188 (28%), Gaps = 21/188 (11%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSG-RAFCAG 90
           + V  +      IL+ P  +N +   M  +L  +     +D ++       +    F A 
Sbjct: 11  LRVSSEHGVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAH 69

Query: 91  GDIVSL----YHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSI 146
            D+                    + F+ +   I       +  +  L G   GGGA    
Sbjct: 70  VDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQP---QVTIVKLAGKARGGGAEFVA 126

Query: 147 PGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEM 201
                 A          E L+G  P  G + YL      +G   A    LT    +    
Sbjct: 127 AADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGR---VGRNRALEVVLTADLFDAETA 183

Query: 202 MACGLATH 209
            + G    
Sbjct: 184 ASYGWINR 191

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 23/219 (10%)

Query: 11  RYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALN----ALNTNMGAKL 66
            +  D  ++S  +           +++ E + +     ++   A+N      +T +   +
Sbjct: 9   HHSQDPNSMSAVQPFIRTNIGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDI 68

Query: 67  NKLFKAWENDPN---------IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYS 117
                      N         +       F  GGD+      + +G      D+ +    
Sbjct: 69  TGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVR 128

Query: 118 FIYLLGTHL---KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA 174
            ++     L      +A++ G  +GGG   ++     +A    +   PE L    P  GA
Sbjct: 129 GVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGA 188

Query: 175 SFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGLATH 209
               S +   +   LA    L G   +  +++  GL   
Sbjct: 189 Y---SFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDR 224

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 79.9 bits (198), Expect = 2e-17
 Identities = 37/184 (20%), Positives = 62/184 (33%), Gaps = 15/184 (8%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFC 88
           VLVE  A + +A+     P  +N+L+     +L    +  END +             F 
Sbjct: 5   VLVEPDAGAGVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 63

Query: 89  AGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPG 148
           AG D+      M          +++ +      L       V+ +NG    GG  V++  
Sbjct: 64  AGLDLT----EMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTC 119

Query: 149 TFRVACGKTVFAT--PETLIGFHPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACG 205
            +R+      +     ET +G          L +  GH   E     G     AE +  G
Sbjct: 120 DYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVG 179

Query: 206 LATH 209
           +   
Sbjct: 180 IVDQ 183

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 78.8 bits (195), Expect = 7e-17
 Identities = 36/187 (19%), Positives = 54/187 (28%), Gaps = 21/187 (11%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAG 90
           +          A  N P  +N +   +   L  L +   +           +    F   
Sbjct: 10  IKARLDGTVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPH 68

Query: 91  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYL---LGTHLKPHVAILNGVTMGGGAGVSIP 147
            D+      + +   E  K       S   L   L       +A L G   G G+   + 
Sbjct: 69  VDMT----KVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLA 124

Query: 148 GTFRVA-CGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMM 202
              R A     +   PE  IG  P AGA  +L+ L   LG   A    LT +  +     
Sbjct: 125 CDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRL---LGRGRALEAVLTSSDFDADLAE 181

Query: 203 ACGLATH 209
             G    
Sbjct: 182 RYGWVNR 188

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 20/172 (11%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG------RAFCAGGDIVSLYH 98
           +NRP   NA       +L   F     D  IG     G+G       AFC+GGD      
Sbjct: 25  INRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSV--- 81

Query: 99  FMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTV 158
               G +++       +     L+ +  K  +A++ G  +GGG  + +     +A    +
Sbjct: 82  RGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAI 141

Query: 159 FATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACGL 206
           F      +G       S YL+ +   +G+  A        + +  E    G+
Sbjct: 142 FGQTGPKVGSFDGGFGSSYLARI---VGQKKAREIWYLCRQYSAQEAERMGM 190

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 33/193 (17%)

Query: 36  VLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFC 88
           +  E K+   +A   +NRP   NA       ++ +       D NIG     G+G +AFC
Sbjct: 29  IRYE-KSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFC 87

Query: 89  AGGDI--------VSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGG 140
           +GGD               ++   + + +   RT            KP VA++ G ++GG
Sbjct: 88  SGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCP----------KPVVAMVAGYSIGG 137

Query: 141 GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKL 196
           G  + +     +A    +F      +G       + Y++ +   +G+  A        + 
Sbjct: 138 GHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARI---VGQKKAREIWFLCRQY 194

Query: 197 NGAEMMACGLATH 209
           +  + +  GL   
Sbjct: 195 DAKQALDMGLVNT 207

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 76.4 bits (189), Expect = 4e-16
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 18/184 (9%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAG 90
           + V  +       L+   + N+ +     + N        DP+I          + F AG
Sbjct: 11  LTVFKEDGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAG 69

Query: 91  GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF 150
            DI    +F+          F       +  +    + ++A L G T+GGG  +++    
Sbjct: 70  ADI----NFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDL 125

Query: 151 RVACGKTV-FATPETLIGFHPDAGASFYLSHLPGHLGEFLA----LTGAKLNGAEMMACG 205
           R    +      PE  +G     G +  L+ L   +G   A    +TG  +   E +  G
Sbjct: 126 RFMGDEAGKIGLPEVSLGVLAGTGGTQRLARL---IGYSRALDMNITGETITPQEALEIG 182

Query: 206 LATH 209
           L   
Sbjct: 183 LVNR 186

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 72.3 bits (177), Expect = 3e-14
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 15/215 (6%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPN------IGFGSGRAFCAGGDIVSLYHFMN 101
                  LN+ +  +  +L+   +    +        +     R FC+G +I  L    +
Sbjct: 45  RDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTH 104

Query: 102 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC--GKTVF 159
             K+  CK    T               +A +NG   GGG  +++            +  
Sbjct: 105 AWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSV 164

Query: 160 ATPE-TLIGFHPDAGASFYLSHL----PGHLGEFLALTGAKLNGAEMMACGLATH-YSVS 213
           + PE  L+G  P  G    ++            F       + G    A  L       +
Sbjct: 165 SLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFC-TVVEGVRGERAKAWRLVDEVVKPN 223

Query: 214 EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPD 248
           +    I+    +L         A     + +   D
Sbjct: 224 QFDQAIQARALELAAQSDRPAHAQGVPLTRIERTD 258

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 13/166 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGK 104
           L  P   N+L+ ++   L   ++   +  ++      G+   F  G DI      M +G 
Sbjct: 23  LINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGE-MQKGN 80

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
           ++E K  + ++     LL    KP VA ++G+ +GGG  +++    R++        PE 
Sbjct: 81  VKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPEL 140

Query: 165 LIGFHPDAGASFYLSHLPGHLGEFLAL----TGAKLNGAEMMACGL 206
            +G  P  G +  L  L   +G   AL    T   +   E  + GL
Sbjct: 141 QLGVIPGFGGTQRLPRL---VGLTKALEMILTSKPVKAEEGHSLGL 183

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 30/206 (14%)

Query: 9   ISRYFNDLRALSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNK 68
              + +    L    +  +    L + + +          L  P   NA++  +  ++  
Sbjct: 4   SHHHHHHSSGLVPRGSHMAEYLRLPHSLAM--------IRLCNPPV-NAVSPTVIREVRN 54

Query: 69  LFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGT 124
             +   +D  +      G+   FCAG DI     F               +         
Sbjct: 55  GLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPG---LALGSLVDEI-------QR 104

Query: 125 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 184
           + KP +A + GV +GGG  +++   +R+A  K     PE  +G  P A  +  L  +   
Sbjct: 105 YQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRV--- 161

Query: 185 LGEFLAL----TGAKLNGAEMMACGL 206
           +G  +AL    +G  L+  E +  G+
Sbjct: 162 VGVPVALDLITSGKYLSADEALRLGI 187

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 12/159 (7%)

Query: 56  NALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGKLEECKDF 111
           N  N     +L +   A + D ++           F  G DI            E     
Sbjct: 30  NKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAEL-IAG 88

Query: 112 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD 171
                           P VA +NG+ +GGG  + +   FRV         PE  +G +P 
Sbjct: 89  NLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPG 148

Query: 172 AGASFYLSHLPGHLGEFLAL----TGAKLNGAEMMACGL 206
            G +  L  L   +G   A+    +G +    + +    
Sbjct: 149 FGGTVRLPRL---IGVDNAVEWIASGKENRAEDALKVSA 184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 4e-09
 Identities = 50/393 (12%), Positives = 117/393 (29%), Gaps = 112/393 (28%)

Query: 24  TSSSVTDDLCNQVLVEGKANSRM-----AILNRPSALNALNTNMGAKLNK----LFKAWE 74
             S ++ +  + +++   A S        +L++      +   +   L      L    +
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIK 99

Query: 75  NDPNIGFGSGRAF-------CAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK 127
            +        R +            + + Y+        + +   + L          L+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLE--------LR 148

Query: 128 PHVAI-LNGVTMGGGAGVSIPGTFRVACGKTVFATPETL----IGFHPDAGASFYLS--- 179
           P   + ++G  + G              GKT  A  +      +    D    F+L+   
Sbjct: 149 PAKNVLIDG--VLG-------------SGKTWVAL-DVCLSYKVQCKMDFKI-FWLNLKN 191

Query: 180 -HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPL--IEEELGK----------- 225
            + P  + E L     +++         + H S + KL +  I+ EL +           
Sbjct: 192 CNSPETVLEMLQKLLYQIDP---NWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 226 LVTDD---PSVIEA----CLEKYSDLVYPDKNSVIHR-IDIVDKCFGLDT----VEEIID 273
           LV  +        A    C           K  +  R   + D      T    ++    
Sbjct: 248 LVLLNVQNAKAWNAFNLSC-----------KILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 274 SL---ESEASLINDPWCGSTLRLL-KEA---SPLSLKVSLRSIREG--RFQTFDECLVRE 324
           +L   E ++ L+   +     + L +E    +P  L +   SIR+G   +  +      +
Sbjct: 297 TLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 325 YRMSLQ-GVSRLISGDF---YEVSNFQILNKHV 353
               ++  ++ L   ++   ++     +     
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFD--RLSVFPPSA 385

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 6e-09
 Identities = 74/377 (19%), Positives = 116/377 (30%), Gaps = 116/377 (30%)

Query: 2   QRLKISNISRY--FNDLR-ALSQHRTS-------------SSVTDDLCNQVLVEGKANSR 45
           Q     N+SR   +  LR AL + R +             + V  D+C    V+ K + +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 46  -----MAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFM 100
                +   N P  +  L       L KL   ++ DPN        + +  D  S     
Sbjct: 184 IFWLNLKNCNSPETV--LE-----MLQKLL--YQIDPN--------WTSRSDHSSNIKL- 225

Query: 101 NQGKLEECKDFFRTLYSFIYLLGTHLKPHVA---ILNGVTMGGGAGVSIPGTFRVACGKT 157
              ++   +   R L           KP+     +L  V             F ++C K 
Sbjct: 226 ---RIHSIQAELRRLLK--------SKPYENCLLVLLNV-----QNAKAWNAFNLSC-KI 268

Query: 158 VFAT-------------------PETLIGFHPDAGASF---YLSHLPGHLGEFLALTGAK 195
           +  T                       +   PD   S    YL   P  L     LT   
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNP 327

Query: 196 LNG---AEMMACGLAT-----HYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDL-VY 246
                 AE +  GLAT     H +  +   +IE  L  L   +P+        +  L V+
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL---EPAEYRKM---FDRLSVF 381

Query: 247 PDKNSVIHRIDIVDKCFGL-------DTVEEIIDSLESEASLINDPWCGSTLRL----LK 295
           P   S      I      L         V  +++ L    SL+      ST+ +    L+
Sbjct: 382 PP--SA----HIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLE 434

Query: 296 EASPLSLKVSL-RSIRE 311
               L  + +L RSI +
Sbjct: 435 LKVKLENEYALHRSIVD 451

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	353
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.77
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.73
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.73
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.52
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.5
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.47
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.46
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.79
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.4
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.28
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.25
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.19
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.18
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	97.96
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.86
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.65
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.48
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.44
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	97.36
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.2
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.14
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.11
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.05
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.8
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.71
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.62
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.59
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.48
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.07
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	95.84
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	95.37
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.2
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	95.08
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	93.76
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	91.98
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	91.56
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	89.38
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	81.58
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	80.22

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.6e-59  Score=448.32  Aligned_cols=306  Identities=34%  Similarity=0.583  Sum_probs=266.7

Q ss_pred             CCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCCh
Q 018632           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKL  105 (353)
Q Consensus        31 ~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~  105 (353)
                      ..++.|.++++|+|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++..... .+.
T Consensus         6 ~~~e~vl~e~~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~-~~~   84 (353)
T 4hdt_A            6 AKNEDVLVNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAK-ADG   84 (353)
T ss_dssp             --CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHH-TTS
T ss_pred             CCCCcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccc-hhh
Confidence            345679999999999999999999999999999999999999999999998    888 79999999999876432 344


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH
Q 018632          106 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  185 (353)
Q Consensus       106 ~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~  185 (353)
                      .....++...+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g~~  164 (353)
T 4hdt_A           85 AEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPGKL  164 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhhHH
Confidence            55667778888999999999999999999999999999999999999999999999999999999999999999999955


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      +++|+|||++++|+||+++||||+|||+++|++.+..+..-      .+......+..  .............+++||+.
T Consensus       165 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~------~~~~~l~~~~~--~~~~~~l~~~~~~i~~~f~~  236 (353)
T 4hdt_A          165 GLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIAD------GVDAALAAHAQ--EPPASPLAEQRSWIDECYTG  236 (353)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHH------CHHHHHHHHCB--CCCCCHHHHTHHHHHHHTTC
T ss_pred             HHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHh------chhHHHHHhcc--cCCccchHHHHHHHHHHhCC
Confidence            99999999999999999999999999999998877766321      12223333322  23344566678889999999


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMSLQGVSRLISGDFYEVS  344 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~-~~~~~l~~e~~~~~~~~~~~~~~d~~egi  344 (353)
                      ++++++++.|+..    ..+|+.+.++.|+++||.|++.+|++++++... +++++++.|.+++..++.   ++||+|||
T Consensus       237 ~~~~~i~~~L~~~----~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~---s~D~~EGv  309 (353)
T 4hdt_A          237 DTVADIIAALRAH----DAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLK---SHDLVEGI  309 (353)
T ss_dssp             SSHHHHHHHHHHH----CSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             CCHHHHHHHHHhc----ccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhC---CchHHHHH
Confidence            9999999999876    568999999999999999999999999998775 899999999999999997   99999999


Q ss_pred             hhee--ccCC
Q 018632          345 NFQI--LNKH  352 (353)
Q Consensus       345 ~afl--~~~~  352 (353)
                      +|||  +||+
T Consensus       310 rAfl~dekR~  319 (353)
T 4hdt_A          310 RAQLVDKDRN  319 (353)
T ss_dssp             HHHHC----C
T ss_pred             hhhhhCcCCC
Confidence            9999  5554

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=1.3e-57  Score=437.22  Aligned_cols=311  Identities=39%  Similarity=0.642  Sum_probs=273.2

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      .++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++........ .
T Consensus         4 ~~~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~-~   82 (363)
T 3bpt_A            4 AAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQ-K   82 (363)
T ss_dssp             CCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSC-C
T ss_pred             CCcceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhccccc-H
Confidence            34468899999999999999999999999999999999999999999988    877 89999999998865321111 1


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHH
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG  186 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a  186 (353)
                      ....++.....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..|
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a  162 (363)
T 3bpt_A           83 IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLG  162 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHHHH
Confidence            12334455567888999999999999999999999999999999999999999999999999999999999999999779


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccC---CChhhHHHHHHHHHHhc
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVY---PDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  263 (353)
                      ++|++||++++|+||+++||||+|+|++++....+.+.++...++..+..+++.+.....   +...........|+.||
T Consensus       163 ~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f  242 (363)
T 3bpt_A          163 YFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCF  242 (363)
T ss_dssp             HHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHT
T ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHh
Confidence            999999999999999999999999999999877777777777788899999988864332   11233445577899999


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                      +.++++++++.+++.    ..+|+.+++++|+++||.|++.+|++++++...++.++++.|...+..++.   ++|++||
T Consensus       243 ~~~~~~ei~~al~~~----~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~---s~D~~EG  315 (363)
T 3bpt_A          243 SANTVEEIIENLQQD----GSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMR---GHDFHEG  315 (363)
T ss_dssp             TSSSHHHHHHHHHHH----CCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SSHHHHH
T ss_pred             CCCCHHHHHHHHhcc----ChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---CccHHhh
Confidence            999999999999885    568999999999999999999999999999989999999999999999887   9999999


Q ss_pred             hhhee-cc
Q 018632          344 SNFQI-LN  350 (353)
Q Consensus       344 i~afl-~~  350 (353)
                      ++||+ +|
T Consensus       316 v~Afl~eK  323 (363)
T 3bpt_A          316 VRAVLIDK  323 (363)
T ss_dssp             HHHHTTSC
T ss_pred             hhheeeCC
Confidence            99999 45

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=3.3e-58  Score=446.08  Aligned_cols=316  Identities=28%  Similarity=0.505  Sum_probs=271.6

Q ss_pred             cCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcC-
Q 018632           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQG-  103 (353)
Q Consensus        30 ~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~-  103 (353)
                      +.+++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++....... 
T Consensus        38 ~v~~~~v~~~~~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~  117 (407)
T 3ju1_A           38 NVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAK  117 (407)
T ss_dssp             SEEEEEEECTTSCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHT
T ss_pred             ccccceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccc
Confidence            4456678888999999999999999999999999999999999999999988    888 8999999999987642211 


Q ss_pred             --ChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhc
Q 018632          104 --KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL  181 (353)
Q Consensus       104 --~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~  181 (353)
                        .......++...+.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus       118 ~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl  197 (407)
T 3ju1_A          118 GQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRM  197 (407)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTS
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhh
Confidence              234456677777889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCC-H----HHHHHHHHHhhcc--cCCChhhHHH
Q 018632          182 PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDD-P----SVIEACLEKYSDL--VYPDKNSVIH  254 (353)
Q Consensus       182 ~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~-~----~~~~~~~~~~~~~--~~~~~~~~~~  254 (353)
                      +|..|++|+|||++++|+||+++|||++|+|++++.++.+.|..+.... +    .......+.+...  .......+..
T Consensus       198 ~g~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~  277 (407)
T 3ju1_A          198 PGKMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAE  277 (407)
T ss_dssp             STTHHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHH
T ss_pred             hHHHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHH
Confidence            9933999999999999999999999999999999988777775544322 1    1122333333221  2233555667


Q ss_pred             HHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhc
Q 018632          255 RIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSR  334 (353)
Q Consensus       255 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~  334 (353)
                      ....|+.||+ ++++++++.|++...  ..+|+++++++|+++||.|++.+|++++++...+++++++.|..++..++. 
T Consensus       278 ~~~~I~~~f~-~sv~~i~~~L~~~~~--~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~-  353 (407)
T 3ju1_A          278 SQEMIDRLMA-GSLTDIVTRMSTLST--DEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCA-  353 (407)
T ss_dssp             THHHHHHHTC-SCHHHHHHHHHHCCC--SCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhc-CCHHHHHHHHHhccc--ccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC-
Confidence            7889999999 999999999987432  469999999999999999999999999999999999999999999999998 


Q ss_pred             CCCCChhhhhhheeccC
Q 018632          335 LISGDFYEVSNFQILNK  351 (353)
Q Consensus       335 ~~~~d~~egi~afl~~~  351 (353)
                        ++||+|||+||+++|
T Consensus       354 --s~D~~EGvrAflidK  368 (407)
T 3ju1_A          354 --KGDFCEGVRALLIDK  368 (407)
T ss_dssp             --HSSHHHHHHHHTTSC
T ss_pred             --CHHHHHHHHHHHhcC
Confidence              999999999999544

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=5.8e-58  Score=423.97  Aligned_cols=256  Identities=24%  Similarity=0.312  Sum_probs=223.7

Q ss_pred             CCCcCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhc
Q 018632           27 SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQ  102 (353)
Q Consensus        27 ~~~~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~  102 (353)
                      +..-.|++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++......
T Consensus         8 ~~~GsM~e~il~~~~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~   87 (274)
T 4fzw_C            8 HHHGSMMEFILSHVEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTG   87 (274)
T ss_dssp             --------CEEEEEETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC--------
T ss_pred             CccccccccEEEEEECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccc
Confidence            3345677889999999999999999999999999999999999999999999988    899999999999987654333


Q ss_pred             CChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcC
Q 018632          103 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  182 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~  182 (353)
                      ...+....+.+.+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus        88 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v  167 (274)
T 4fzw_C           88 PAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVA  167 (274)
T ss_dssp             -CCCHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHh
Confidence            33344555666677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 018632          183 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  261 (353)
Q Consensus       183 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (353)
                      |.. |++|++||++++|+||+++||||+|+|++++.+.+.                                        
T Consensus       168 G~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------  207 (274)
T 4fzw_C          168 GRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQ----------------------------------------  207 (274)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHH----------------------------------------
T ss_pred             hHHHHHHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHH----------------------------------------
Confidence            999 999999999999999999999999999998875444                                        


Q ss_pred             hcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 018632          262 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  341 (353)
Q Consensus       262 ~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~  341 (353)
                                                 +++++|+++||.+++.+|++++.....+++++++.|...+...+.   ++|++
T Consensus       208 ---------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~  257 (274)
T 4fzw_C          208 ---------------------------QLARHLATQPTFGLGLIKQAINSAETNTLDTQLDLERDYQRLAGR---SADYR  257 (274)
T ss_dssp             ---------------------------HHHHHHTTSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT---SHHHH
T ss_pred             ---------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc---CHHHH
Confidence                                       348999999999999999999999999999999999999988887   99999


Q ss_pred             hhhhheeccCC
Q 018632          342 EVSNFQILNKH  352 (353)
Q Consensus       342 egi~afl~~~~  352 (353)
                      ||++||++||+
T Consensus       258 Egv~AF~eKR~  268 (274)
T 4fzw_C          258 EGVSAFLAKRS  268 (274)
T ss_dssp             HHHHHHHC-CC
T ss_pred             HHHHHHhCCCC
Confidence            99999999986

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=1.2e-57  Score=418.13  Aligned_cols=242  Identities=27%  Similarity=0.320  Sum_probs=225.6

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDF  111 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  111 (353)
                      |.++++|+|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...     ......+
T Consensus         2 vl~E~~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-----~~~~~~~   76 (254)
T 3hrx_A            2 VLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDR-----KPDYEAH   76 (254)
T ss_dssp             EEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTS-----CCCHHHH
T ss_pred             eEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhccc-----chhhHHH
Confidence            6789999999999999999999999999999999999999999998    899999999999987542     2223455


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHH
Q 018632          112 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  190 (353)
Q Consensus       112 ~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~  190 (353)
                      ...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |++|+
T Consensus        77 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll  156 (254)
T 3hrx_A           77 LRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL  156 (254)
T ss_dssp             THHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHh
Confidence            66778889999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHH
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  270 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (353)
                      +||++++|+||+++||||+|+|++++.+.+.                                                 
T Consensus       157 ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------------  187 (254)
T 3hrx_A          157 LLSPRLSAEEALALGLVHRVVPAEKLMEEAL-------------------------------------------------  187 (254)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEECGGGHHHHHH-------------------------------------------------
T ss_pred             hcCcccCHHHHHHCCCeEEecCcHHHHHHHH-------------------------------------------------
Confidence            9999999999999999999999998875444                                                 


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018632          271 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  350 (353)
Q Consensus       271 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~  350 (353)
                                        +++++|++++|.+++.+|++++.....+++++++.|...+..++.   ++|++||++||++|
T Consensus       188 ------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~Eg~~AF~eK  246 (254)
T 3hrx_A          188 ------------------SLAKELAQGPTRAYALTKKLLLETYRLSLTEALALEAVLQGQAGQ---TQDHEEGVRAFREK  246 (254)
T ss_dssp             ------------------HHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHT---SHHHHHHHHHHHTT
T ss_pred             ------------------HHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHhCC
Confidence                              348999999999999999999999999999999999999999987   99999999999999


Q ss_pred             CC
Q 018632          351 KH  352 (353)
Q Consensus       351 ~~  352 (353)
                      |+
T Consensus       247 R~  248 (254)
T 3hrx_A          247 RP  248 (254)
T ss_dssp             SC
T ss_pred             CC
Confidence            86

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=4.1e-57  Score=414.95  Aligned_cols=243  Identities=22%  Similarity=0.287  Sum_probs=224.3

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      +.|.++++|+|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...    .  ...
T Consensus         5 s~l~ve~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~----~--~~~   78 (258)
T 4fzw_A            5 SELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEK----D--LAA   78 (258)
T ss_dssp             CEEEEEEETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTC----C--HHH
T ss_pred             CcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccc----h--hhh
Confidence            358899999999999999999999999999999999999999999988    999999999999987642    1  222


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      .+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++
T Consensus        79 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  158 (258)
T 4fzw_A           79 TLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASK  158 (258)
T ss_dssp             HHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             HHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHH
Confidence            3334456788899999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      |++||+.++|+||+++||||+|+|++++.+.+.                                               
T Consensus       159 llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~-----------------------------------------------  191 (258)
T 4fzw_A          159 MVLSGESITAQQAQQAGLVSDVFPSDLTLEYAL-----------------------------------------------  191 (258)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHH-----------------------------------------------
T ss_pred             HHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999999875444                                               


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                                          +++++|+++||.+++.+|++++.....+++++++.|...+..++.   ++|++||++||+
T Consensus       192 --------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~Eg~~AF~  248 (258)
T 4fzw_A          192 --------------------QLASKMARHSPLALQAAKQALRQSQEVALQAGLAQERQLFTLLAA---TEDRHEGISAFL  248 (258)
T ss_dssp             --------------------HHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SHHHHHHHHHHH
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHh
Confidence                                348999999999999999999999999999999999999999997   999999999999


Q ss_pred             ccCC
Q 018632          349 LNKH  352 (353)
Q Consensus       349 ~~~~  352 (353)
                      +||+
T Consensus       249 eKR~  252 (258)
T 4fzw_A          249 QKRT  252 (258)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            9986

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=2.3e-55  Score=407.98  Aligned_cols=261  Identities=22%  Similarity=0.249  Sum_probs=236.1

Q ss_pred             cccCCCCCcCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHH
Q 018632           22 HRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLY   97 (353)
Q Consensus        22 ~~~~~~~~~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~   97 (353)
                      ..+.+......++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.
T Consensus         5 ~~~~~~~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~   84 (279)
T 3g64_A            5 PFTGSAAPTPEWRHLRVEITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEII   84 (279)
T ss_dssp             CCCCSCCCCSCCSSEEEEEETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTH
T ss_pred             CCCCccCCCCCCCeEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHh
Confidence            333344444557789999999999999999999999999999999999999999999998    8899999999999987


Q ss_pred             HhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccc-cCccHHH
Q 018632           98 HFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH-PDAGASF  176 (353)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~-p~~g~~~  176 (353)
                      .............+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~  164 (279)
T 3g64_A           85 GATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAY  164 (279)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHH
T ss_pred             hccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHH
Confidence            654333334445566677889999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             HHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHH
Q 018632          177 YLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR  255 (353)
Q Consensus       177 ~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (353)
                      +|++++|.. |++|++||+.++|+||+++||||+|+|++++.+.+.                                  
T Consensus       165 ~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------  210 (279)
T 3g64_A          165 LLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAAR----------------------------------  210 (279)
T ss_dssp             HHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHH----------------------------------
T ss_pred             HHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHH----------------------------------
Confidence            999999999 999999999999999999999999999999875544                                  


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcC
Q 018632          256 IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRL  335 (353)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~  335 (353)
                                                       +++++|++.||.+++.+|++++.....+++++++.|...+..++.  
T Consensus       211 ---------------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~--  255 (279)
T 3g64_A          211 ---------------------------------TLARRLADGPALAHAQTKALLTAELDMPLAAAVELDASTQALLMT--  255 (279)
T ss_dssp             ---------------------------------HHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT--
T ss_pred             ---------------------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc--
Confidence                                             348999999999999999999999999999999999999999887  


Q ss_pred             CCCChhhhhhheeccCC
Q 018632          336 ISGDFYEVSNFQILNKH  352 (353)
Q Consensus       336 ~~~d~~egi~afl~~~~  352 (353)
                       ++|++||+++|++||+
T Consensus       256 -s~d~~eg~~af~ekr~  271 (279)
T 3g64_A          256 -GEDYAEFHAAFTEKRP  271 (279)
T ss_dssp             -SHHHHHHHHHHHTTSC
T ss_pred             -CHHHHHHHHHHhcCCC
Confidence             9999999999999986

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=7.2e-55  Score=400.83  Aligned_cols=248  Identities=21%  Similarity=0.270  Sum_probs=227.1

Q ss_pred             CCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChH
Q 018632           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        31 ~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      +|++.|.++++++|++||||||++ |+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...   ....
T Consensus         3 ~m~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~   78 (261)
T 3pea_A            3 AMLKFLSVRVEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSV---TEAK   78 (261)
T ss_dssp             -CCSSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTT---CCHH
T ss_pred             ccccceEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhc---Cchh
Confidence            467789999999999999999999 99999999999999999999999988    889999999999987643   2223


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                      ....+....+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. 
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  158 (261)
T 3pea_A           79 QATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAK  158 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence            3344555566788899999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      +++|++||+.++|+||+++||||+|+|++++.+.+.                                            
T Consensus       159 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  194 (261)
T 3pea_A          159 ACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTL--------------------------------------------  194 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHH--------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999988875444                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                                             +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||++
T Consensus       195 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~  248 (261)
T 3pea_A          195 -----------------------KVAKQIAGKSPATARAVLELLQTTKSSHYYEGVQREAQIFGEVFT---SEDGREGVA  248 (261)
T ss_dssp             -----------------------HHHHHHHTSCHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---SHHHHHHHH
T ss_pred             -----------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                   348999999999999999999998888999999999999999998   999999999


Q ss_pred             heeccCC
Q 018632          346 FQILNKH  352 (353)
Q Consensus       346 afl~~~~  352 (353)
                      +|++||+
T Consensus       249 af~ekr~  255 (261)
T 3pea_A          249 AFLEKRK  255 (261)
T ss_dssp             HHHTTSC
T ss_pred             HHHcCCC
Confidence            9999986

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=1.5e-54  Score=399.47  Aligned_cols=246  Identities=20%  Similarity=0.301  Sum_probs=229.0

Q ss_pred             CCceEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChH
Q 018632           33 CNQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        33 ~~~v~~~-~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      ++.|.++ .+++|++||||||+++|+||.+|+.+|.++++.++.|+++++    |.| ++||+|+|++++...    +.+
T Consensus         7 ~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~   82 (265)
T 3kqf_A            7 LQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGM----NEE   82 (265)
T ss_dssp             CCSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTC----CHH
T ss_pred             CCeEEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhcc----CHH
Confidence            4679999 899999999999999999999999999999999999999988    888 999999999988652    345


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                      ....+...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  162 (265)
T 3kqf_A           83 QVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR  162 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence            5566777788899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      |++|++||+.++|+||+++||||+|+|++++.+.+.                                            
T Consensus       163 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  198 (265)
T 3kqf_A          163 AKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAI--------------------------------------------  198 (265)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH--------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999988875444                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                                             +++++|+++||.+++.+|++++.....+++++++.|...+..++.   ++|++||++
T Consensus       199 -----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~  252 (265)
T 3kqf_A          199 -----------------------EIAEKIASNGPIAVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIH---TKDRLEGLQ  252 (265)
T ss_dssp             -----------------------HHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---CHHHHHHHH
T ss_pred             -----------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                   348999999999999999999999999999999999999999997   999999999


Q ss_pred             heeccCC
Q 018632          346 FQILNKH  352 (353)
Q Consensus       346 afl~~~~  352 (353)
                      +|++||+
T Consensus       253 af~ekr~  259 (265)
T 3kqf_A          253 AFKEKRT  259 (265)
T ss_dssp             HHHTTSC
T ss_pred             HHHcCCC
Confidence            9999986

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=3e-54  Score=397.88  Aligned_cols=248  Identities=19%  Similarity=0.238  Sum_probs=225.8

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.... .......
T Consensus         3 ~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~~~~~   81 (268)
T 3i47_A            3 LSDLLYEIQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMA-NFTEEEN   81 (268)
T ss_dssp             CCSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHH-TCCHHHH
T ss_pred             CCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccc-cccHHHH
Confidence            4579999999999999999999999999999999999999999999998    8899999999999987642 2233333


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|.. |+
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A~  160 (268)
T 3i47_A           82 LEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERAAK  160 (268)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHHHH
Confidence            4455667788999999999999999999999999999999999999999999999999999999988 789999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||+.++|+||+++||||+|+|++++.+.+.                                              
T Consensus       161 ~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~----------------------------------------------  194 (268)
T 3i47_A          161 MLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTL----------------------------------------------  194 (268)
T ss_dssp             HHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHH----------------------------------------------
T ss_pred             HHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988875444                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHH-HHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDE-CLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~-~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                           +++++|+++||.+++.+|++++.....++++ .++.|...+..++.   ++|++||+++
T Consensus       195 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~---s~d~~eg~~A  250 (268)
T 3i47_A          195 ---------------------KYASQISNNAPEAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRV---SDEGQEGLKA  250 (268)
T ss_dssp             ---------------------HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH---SHHHHHHHHH
T ss_pred             ---------------------HHHHHHHcCCHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence                                 4489999999999999999999988888888 78999999999988   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |++||+
T Consensus       251 F~ekR~  256 (268)
T 3i47_A          251 FLNKEI  256 (268)
T ss_dssp             HHHTCC
T ss_pred             HHcCCC
Confidence            999986

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=3.3e-54  Score=401.99  Aligned_cols=254  Identities=20%  Similarity=0.264  Sum_probs=223.0

Q ss_pred             CcCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCC
Q 018632           29 TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK  104 (353)
Q Consensus        29 ~~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~  104 (353)
                      .+.|+..|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++........
T Consensus        19 ~~~m~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~   98 (290)
T 3sll_A           19 PGSMSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGG   98 (290)
T ss_dssp             ----CCEEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTT
T ss_pred             CCCCCeEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhccccccc
Confidence            45566789999999999999999999999999999999999999999999988    88999999999998865321111


Q ss_pred             ---hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccC-ccHHHHHhh
Q 018632          105 ---LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD-AGASFYLSH  180 (353)
Q Consensus       105 ---~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~-~g~~~~l~r  180 (353)
                         ......+...+..++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r  178 (290)
T 3sll_A           99 LTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPR  178 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHH
Confidence               1224456677788999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             cChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHH
Q 018632          181 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV  259 (353)
Q Consensus       181 ~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (353)
                      ++|.. |++|++||+.++|+||+++||||+|+|++++.+.+.                                      
T Consensus       179 ~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~--------------------------------------  220 (290)
T 3sll_A          179 AIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECY--------------------------------------  220 (290)
T ss_dssp             HHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHH--------------------------------------
T ss_pred             HhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHH--------------------------------------
Confidence            99998 999999999999999999999999999988875443                                      


Q ss_pred             HHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHhh-hcCCC
Q 018632          260 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGV-SRLIS  337 (353)
Q Consensus       260 ~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~~~~l~~e~~~~~~~~-~~~~~  337 (353)
                                                   +++++|++.||.+++.+|++++.... .+++++++.|...+..++ .   +
T Consensus       221 -----------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~---s  268 (290)
T 3sll_A          221 -----------------------------AIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLL---T  268 (290)
T ss_dssp             -----------------------------HHHHHHHHSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH---C
T ss_pred             -----------------------------HHHHHHHcCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhc---C
Confidence                                         44899999999999999999999988 899999999999999988 8   9


Q ss_pred             CChhhhhhheeccCC
Q 018632          338 GDFYEVSNFQILNKH  352 (353)
Q Consensus       338 ~d~~egi~afl~~~~  352 (353)
                      +|++||+++|++||+
T Consensus       269 ~d~~eg~~AFlekR~  283 (290)
T 3sll_A          269 DNFEEATAARKEKRP  283 (290)
T ss_dssp             CHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHcCCC
Confidence            999999999999986

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.1e-54  Score=402.00  Aligned_cols=244  Identities=22%  Similarity=0.180  Sum_probs=224.1

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++++.+  |++|++    |.|++||+|+|++++..    .+....
T Consensus        15 ~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~----~~~~~~   88 (275)
T 3hin_A           15 PSTLVVDTVGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRE----RDATEG   88 (275)
T ss_dssp             GGGEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCC----CCHHHH
T ss_pred             CCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhc----cChhhH
Confidence            46799999999999999999999999999999999999998  567777    88999999999998754    233344


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |+
T Consensus        89 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  168 (275)
T 3hin_A           89 LVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMA  168 (275)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHH
Confidence            45566778889999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||+.++|+||+++||||+|+|++++.+.+.                                              
T Consensus       169 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  202 (275)
T 3hin_A          169 DMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKAL----------------------------------------------  202 (275)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHH----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999999875444                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++++|.+++.+|++++.....+++++++.|...+..++.   ++|++||+++|
T Consensus       203 ---------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~AF  258 (275)
T 3hin_A          203 ---------------------ELGNRVAQNAPLTNFAVLQALPMIAEANPQTGLLMESLMATVAQS---DQEAKTRIRAF  258 (275)
T ss_dssp             ---------------------HHHHHHTTSCHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHH---SHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                 448999999999999999999999999999999999999999988   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      ++||+
T Consensus       259 ~ekR~  263 (275)
T 3hin_A          259 LDHKT  263 (275)
T ss_dssp             HHHHH
T ss_pred             HcCCC
Confidence            99974

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=5e-54  Score=397.87  Aligned_cols=249  Identities=20%  Similarity=0.273  Sum_probs=227.5

Q ss_pred             CcCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCC
Q 018632           29 TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK  104 (353)
Q Consensus        29 ~~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~  104 (353)
                      .+.+++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++....  .+
T Consensus        23 ~~~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~  100 (276)
T 3rrv_A           23 VYDMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELS--AD  100 (276)
T ss_dssp             -CCCCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHH--HC
T ss_pred             cCCCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcc--cc
Confidence            34566789999999999999999999999999999999999999999999998    8899999999999987632  22


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       105 ~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      .+....+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus       101 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  180 (276)
T 3rrv_A          101 ADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISL  180 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCH
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCH
Confidence            34445566777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . |++|++||+.++|+||+++||||+|+  +++.+.+.                                          
T Consensus       181 ~~A~ellltG~~i~A~eA~~~GLv~~vv--~~l~~~a~------------------------------------------  216 (276)
T 3rrv_A          181 LLAKEYALTGTRISAQRAVELGLANHVA--DDPVAEAI------------------------------------------  216 (276)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHH------------------------------------------
Confidence            9 99999999999999999999999999  67765443                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                                               +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||
T Consensus       217 -------------------------~~A~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg  268 (276)
T 3rrv_A          217 -------------------------ACAKKILELPQQAVESTKRVLNIHLERAVLASLDYALSAESQSFV---TEDFRSI  268 (276)
T ss_dssp             -------------------------HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SHHHHHH
T ss_pred             -------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                     448999999999999999999988888899999999999988887   9999999


Q ss_pred             hhheeccC
Q 018632          344 SNFQILNK  351 (353)
Q Consensus       344 i~afl~~~  351 (353)
                      +++|++||
T Consensus       269 ~~AF~ekR  276 (276)
T 3rrv_A          269 VTKLADKN  276 (276)
T ss_dssp             HHHHHCCC
T ss_pred             HHHHHcCC
Confidence            99999987

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=4.3e-54  Score=394.38  Aligned_cols=242  Identities=24%  Similarity=0.330  Sum_probs=223.0

Q ss_pred             CCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChH
Q 018632           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        31 ~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      ..++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++..        
T Consensus         3 ~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~--------   74 (255)
T 3p5m_A            3 GSMNGISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDT--------   74 (255)
T ss_dssp             CCBTTEEEEEETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CH--------
T ss_pred             CCCceEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcc--------
Confidence            445579999999999999999999999999999999999999999999998    88999999999998752        


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                        ..+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        75 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  152 (255)
T 3p5m_A           75 --AGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRAR  152 (255)
T ss_dssp             --HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHH
T ss_pred             --hHHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHH
Confidence              14456677888999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      |++|++||+.++|+||+++||||+|+|++++.+.+.                                            
T Consensus       153 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  188 (255)
T 3p5m_A          153 TSRMAMTAEKISAATAFEWGMISHITSADEYESVLT--------------------------------------------  188 (255)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHH--------------------------------------------
T ss_pred             HHHHHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999999876544                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                                             +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||++
T Consensus       189 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~  242 (255)
T 3p5m_A          189 -----------------------DVLRSVSGGPTLAFGWTKRALAAATLAELEPVQAIEAEGQLALVE---TADFREGAR  242 (255)
T ss_dssp             -----------------------HHHHHHHTSCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTT---SHHHHHHHH
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence                                   348999999999999999999999889999999999999999987   999999999


Q ss_pred             heeccCC
Q 018632          346 FQILNKH  352 (353)
Q Consensus       346 afl~~~~  352 (353)
                      +|++||+
T Consensus       243 af~ekr~  249 (255)
T 3p5m_A          243 AFRERRT  249 (255)
T ss_dssp             HHHTTSC
T ss_pred             HHHcCCC
Confidence            9999986

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=8.8e-55  Score=399.37  Aligned_cols=249  Identities=20%  Similarity=0.250  Sum_probs=186.4

Q ss_pred             CCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChH
Q 018632           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        31 ~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      ..+..|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++......... 
T Consensus         3 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-   81 (256)
T 3qmj_A            3 GSMVTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNF-   81 (256)
T ss_dssp             ---CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSC-
T ss_pred             CCcceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhH-
Confidence            445679999999999999999999999999999999999999999999998    889999999999998764322210 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                        ..+...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        82 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  159 (256)
T 3qmj_A           82 --SEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQN  159 (256)
T ss_dssp             --CCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHH
Confidence              11223456788889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      |++|++||+.++|+||+++||||+|+|++++.+.+.                                            
T Consensus       160 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  195 (256)
T 3qmj_A          160 AAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEAR--------------------------------------------  195 (256)
T ss_dssp             HHHHHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHH--------------------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999988875444                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                                             +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||++
T Consensus       196 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~  249 (256)
T 3qmj_A          196 -----------------------RHAEILAAKPISSLMAVKHTMVEPNRAQIAAASARENAHFAELMG---AQANAAALA  249 (256)
T ss_dssp             -----------------------HHHHHHHTSCHHHHHHHHHHHHCC---------------------------------
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                   348999999999999999999998888999999999999998887   999999999


Q ss_pred             heeccCC
Q 018632          346 FQILNKH  352 (353)
Q Consensus       346 afl~~~~  352 (353)
                      +|++||+
T Consensus       250 af~ekr~  256 (256)
T 3qmj_A          250 DFTDRRR  256 (256)
T ss_dssp             -------
T ss_pred             HHHccCC
Confidence            9999985

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=3.4e-54  Score=396.76  Aligned_cols=250  Identities=19%  Similarity=0.256  Sum_probs=225.2

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCc-ccCcchhhHHHhhhcCChHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAF-CAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F-~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++    |.|+.| |+|+|++++.......+...
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~   82 (263)
T 3lke_A            3 LSYVHTEIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVR   82 (263)
T ss_dssp             CCSEEEEECSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHH
T ss_pred             CcEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHH
Confidence            4579999999999999999999999999999999999999999999988    888999 99999999876322234455


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ...+...++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A  162 (263)
T 3lke_A           83 LREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQT  162 (263)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHH
Confidence            566777788899999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecC-CCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSV-SEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      ++|++||+.++|+||+++||||+|+| ++++.+.+.                                            
T Consensus       163 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~--------------------------------------------  198 (263)
T 3lke_A          163 MNLLLEGKLFTSEEALRLGLIQEICENKQELQERVK--------------------------------------------  198 (263)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHH--------------------------------------------
Confidence            99999999999999999999999999 777765443                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                                             +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||++
T Consensus       199 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~e~~~  252 (263)
T 3lke_A          199 -----------------------NYLKAVSEGYVPAIAATKKLLKGKAAEELKQQLEQETEELVALFK---QTEIKKRLE  252 (263)
T ss_dssp             -----------------------HHHHHHHTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT---SHHHHHHHH
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                   448999999999999999999998888999999999999999987   999999999


Q ss_pred             heeccCC
Q 018632          346 FQILNKH  352 (353)
Q Consensus       346 afl~~~~  352 (353)
                      +|+++++
T Consensus       253 ~~~~~~~  259 (263)
T 3lke_A          253 ALVEGHH  259 (263)
T ss_dssp             HC-----
T ss_pred             hhhccCC
Confidence            9999986

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=8.9e-54  Score=394.47  Aligned_cols=245  Identities=20%  Similarity=0.267  Sum_probs=215.9

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++........... 
T Consensus         4 ~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~-   82 (266)
T 3fdu_A            4 HPHLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGP-   82 (266)
T ss_dssp             CTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSC-
T ss_pred             CCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhh-
Confidence            4579999999999999999999999999999999999999999999998    88999999999999873211111110 


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                       .+......++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |+
T Consensus        83 -~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~  161 (266)
T 3fdu_A           83 -AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAA  161 (266)
T ss_dssp             -GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             -HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHHH
Confidence             1233456778889999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||+.++|+||+++||||+|+|  ++.+.+.                                              
T Consensus       162 ~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~----------------------------------------------  193 (266)
T 3fdu_A          162 ELLFTAKKFNAETALQAGLVNEIVE--DAYATAQ----------------------------------------------  193 (266)
T ss_dssp             HHHHHCCEECHHHHHHTTSCSEECS--CHHHHHH----------------------------------------------
T ss_pred             HHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHH----------------------------------------------
Confidence            9999999999999999999999998  6654333                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|+++||.|++.+|++++... .+++++++.|...+..++.   ++|++||+++|
T Consensus       194 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~---s~d~~eg~~aF  248 (266)
T 3fdu_A          194 ---------------------ATAQHLTALPLASLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQ---SPEMLEAVQAF  248 (266)
T ss_dssp             ---------------------HHHHHHHTSCHHHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHT---CHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                 4589999999999999999999765 5799999999999999997   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      ++||+
T Consensus       249 ~ekR~  253 (266)
T 3fdu_A          249 MQKRQ  253 (266)
T ss_dssp             C----
T ss_pred             HcCCC
Confidence            99986

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=4.3e-54  Score=399.25  Aligned_cols=252  Identities=24%  Similarity=0.263  Sum_probs=210.3

Q ss_pred             CCCcCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhc
Q 018632           27 SVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQ  102 (353)
Q Consensus        27 ~~~~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~  102 (353)
                      +..+...+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++......
T Consensus        13 p~~~~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~   92 (278)
T 4f47_A           13 PANGESGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPG   92 (278)
T ss_dssp             ------CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC--------------
T ss_pred             CCCCCCCCceEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchh
Confidence            3344556789999999999999999999999999999999999999999999988    889999999999988653111


Q ss_pred             CChHHHHHHHHHHHHHHHHHh---hCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHh
Q 018632          103 GKLEECKDFFRTLYSFIYLLG---THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS  179 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~~l~---~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~  179 (353)
                         ... ........++..+.   ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus        93 ---~~~-~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~  168 (278)
T 4f47_A           93 ---DSF-KDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLV  168 (278)
T ss_dssp             ------------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHH
T ss_pred             ---hhH-HHHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHH
Confidence               110 10112233455566   89999999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHH
Q 018632          180 HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDI  258 (353)
Q Consensus       180 r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (353)
                      +++|.. +++|++||+.++|+||+++||||+|+|++++.+.+.                                     
T Consensus       169 r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------  211 (278)
T 4f47_A          169 RQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKAL-------------------------------------  211 (278)
T ss_dssp             HHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHH-------------------------------------
T ss_pred             HHhCHHHHHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHH-------------------------------------
Confidence            999999 999999999999999999999999999999875444                                     


Q ss_pred             HHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCC
Q 018632          259 VDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISG  338 (353)
Q Consensus       259 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~  338 (353)
                                                    +++++|++.+|.+++.+|++++.....+++++++.|...+..++.   ++
T Consensus       212 ------------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~  258 (278)
T 4f47_A          212 ------------------------------EIAEIIAANGPLAVQAILRTIRETEGMHENEAFKIDTRIGIEVFL---SD  258 (278)
T ss_dssp             ------------------------------HHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHGGGGG---SS
T ss_pred             ------------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CH
Confidence                                          448999999999999999999999989999999999999999888   99


Q ss_pred             ChhhhhhheeccCC
Q 018632          339 DFYEVSNFQILNKH  352 (353)
Q Consensus       339 d~~egi~afl~~~~  352 (353)
                      |++||+++|++||+
T Consensus       259 d~~eg~~Af~ekr~  272 (278)
T 4f47_A          259 DAKEGPQAFAQKRK  272 (278)
T ss_dssp             HHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999999986

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=5.6e-54  Score=397.72  Aligned_cols=244  Identities=25%  Similarity=0.372  Sum_probs=221.4

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...    .... 
T Consensus        24 ~~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~-   98 (278)
T 3h81_A           24 YETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADL----TFAD-   98 (278)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTC----CHHH-
T ss_pred             CCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhcc----Chhh-
Confidence            3569999999999999999999999999999999999999999999988    988999999999998653    1211 


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                       .+.......+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus        99 -~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~  177 (278)
T 3h81_A           99 -AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAM  177 (278)
T ss_dssp             -HHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             -HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence             2222222336788999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||+.++|+||+++||||+|+|++++.+.+.                                              
T Consensus       178 ~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  211 (278)
T 3h81_A          178 DLILTGRTMDAAEAERSGLVSRVVPADDLLTEAR----------------------------------------------  211 (278)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH----------------------------------------------
T ss_pred             HHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988765443                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||+++|
T Consensus       212 ---------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~AF  267 (278)
T 3h81_A          212 ---------------------ATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFA---TEDQSEGMAAF  267 (278)
T ss_dssp             ---------------------HHHHHHHTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTT---SHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                 458999999999999999999999999999999999999999887   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      ++||+
T Consensus       268 ~ekR~  272 (278)
T 3h81_A          268 IEKRA  272 (278)
T ss_dssp             HTTSC
T ss_pred             HcCCC
Confidence            99986

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=2.1e-53  Score=392.92  Aligned_cols=249  Identities=20%  Similarity=0.234  Sum_probs=222.8

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhh-cCChHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMN-QGKLEEC  108 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~-~~~~~~~  108 (353)
                      +.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++..... .+..+..
T Consensus         3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   82 (269)
T 1nzy_A            3 EAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHF   82 (269)
T ss_dssp             SSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHH
T ss_pred             ceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHH
Confidence            468899999999999999999999999999999999999999999988    88999999999998743100 0011111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+...+++++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |+
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  162 (269)
T 1nzy_A           83 RIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAM  162 (269)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHH
Confidence            24445577888899999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||+.++|+||+++||||+|+|++++.+.+.                                              
T Consensus       163 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  196 (269)
T 1nzy_A          163 ELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAW----------------------------------------------  196 (269)
T ss_dssp             HHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHH----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999877764433                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||+++|
T Consensus       197 ---------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~egi~af  252 (269)
T 1nzy_A          197 ---------------------KVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVT---HPHFMPCLTRF  252 (269)
T ss_dssp             ---------------------HHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH---STTHHHHHHHH
T ss_pred             ---------------------HHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence                                 348999999999999999999998888999999999999999998   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      ++||+
T Consensus       253 ~ekr~  257 (269)
T 1nzy_A          253 LDGHR  257 (269)
T ss_dssp             HTTCC
T ss_pred             HhcCC
Confidence            99985

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=7.2e-54  Score=394.44  Aligned_cols=244  Identities=24%  Similarity=0.276  Sum_probs=223.1

Q ss_pred             CCceEEEEeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           33 CNQVLVEGKAN-SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        33 ~~~v~~~~~~~-v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      ++.|.++.+++ |++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...    ....
T Consensus         8 ~~~i~~~~~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~   83 (263)
T 3moy_A            8 YTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTL----TPHQ   83 (263)
T ss_dssp             CSSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTC----CHHH
T ss_pred             CCeEEEEEeCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhcc----Cchh
Confidence            35699999998 99999999999999999999999999999999999988    988999999999988642    2221


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                        .+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |
T Consensus        84 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A  161 (263)
T 3moy_A           84 --ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKA  161 (263)
T ss_dssp             --HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHH
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHH
Confidence              2234455678899999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|++||+.++|+||+++||||+|+|++++.+.+.                                             
T Consensus       162 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  196 (263)
T 3moy_A          162 MDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEAL---------------------------------------------  196 (263)
T ss_dssp             HHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHH---------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999988765443                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|+++||.+++.+|++++.....+++++++.|...+..++.   ++|++||+++
T Consensus       197 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~A  251 (263)
T 3moy_A          197 ----------------------AVAQRIARMSRPAGRAVKDAINEAFERPLSAGMRYERDAFYAMFD---THDQTEGMTA  251 (263)
T ss_dssp             ----------------------HHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTT---SHHHHHHHHH
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  448999999999999999999999999999999999999999887   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |++||+
T Consensus       252 F~ekR~  257 (263)
T 3moy_A          252 FLEKRT  257 (263)
T ss_dssp             HHTTSC
T ss_pred             HHhCCC
Confidence            999986

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=3.1e-53  Score=389.28  Aligned_cols=245  Identities=29%  Similarity=0.368  Sum_probs=217.9

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++....   +.+..
T Consensus         2 m~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~~~~~   78 (257)
T 2ej5_A            2 YETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEM---DHGDV   78 (257)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC----------CHHHH
T ss_pred             CCceEEEeECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhcc---chhHH
Confidence            3678999999999999999999999999999999999999999999888    8899999999999876421   11111


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ...  .+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus        79 ~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  156 (257)
T 2ej5_A           79 LRS--RYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKAL  156 (257)
T ss_dssp             HHH--THHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             HHH--HHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHH
Confidence            111  256778899999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||+.++|+||+++||||+|+|++++.+.+.                                              
T Consensus       157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  190 (257)
T 2ej5_A          157 ELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVK----------------------------------------------  190 (257)
T ss_dssp             HHHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHH----------------------------------------------
T ss_pred             HHHHhCCccCHHHHHHcCCcceecChhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999888765444                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||+++|
T Consensus       191 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~af  246 (257)
T 2ej5_A          191 ---------------------QFAERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIAGL---TSDHREGVKAF  246 (257)
T ss_dssp             ---------------------HHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH---SHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---ChHHHHHHHHH
Confidence                                 348999999999999999999998888999999999999999988   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      ++||+
T Consensus       247 ~ekr~  251 (257)
T 2ej5_A          247 FEKRK  251 (257)
T ss_dssp             TTTCC
T ss_pred             hcCCC
Confidence            99975

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=3.6e-53  Score=394.74  Aligned_cols=255  Identities=20%  Similarity=0.243  Sum_probs=219.7

Q ss_pred             CCCcCCCCceEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhh
Q 018632           27 SVTDDLCNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMN  101 (353)
Q Consensus        27 ~~~~~~~~~v~~~~~~~v~~I~ln-rp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~  101 (353)
                      ......++.|.++.+++|++|||| ||++.|+||.+|+.+|.++++.++.|+. ++    |.|++||+|+|++++.....
T Consensus        16 ~~~~~~~~~v~~~~~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~   94 (291)
T 2fbm_A           16 PRGSSTYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLR   94 (291)
T ss_dssp             -----CCSSEEEEECSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHH
T ss_pred             cCCCCCcceEEEEEeCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhccc
Confidence            344566677999999999999999 7999999999999999999999998874 65    88999999999998865321


Q ss_pred             cCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhc
Q 018632          102 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL  181 (353)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~  181 (353)
                      .........+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~  174 (291)
T 2fbm_A           95 NNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKM  174 (291)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHH
Confidence            11112233444556778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHH
Q 018632          182 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  260 (353)
Q Consensus       182 ~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (353)
                      +|.. |++|++||+.++|+||+++||||+|+|++++.+.+.                                       
T Consensus       175 vG~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~---------------------------------------  215 (291)
T 2fbm_A          175 MGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVM---------------------------------------  215 (291)
T ss_dssp             HCHHHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHH---------------------------------------
T ss_pred             HhHHHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHH---------------------------------------
Confidence            9998 999999999999999999999999999999875444                                       


Q ss_pred             HhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 018632          261 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDF  340 (353)
Q Consensus       261 ~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~  340 (353)
                                                  +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|+
T Consensus       216 ----------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~  264 (291)
T 2fbm_A          216 ----------------------------IQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWS---SAQG  264 (291)
T ss_dssp             ----------------------------HHHHHHTTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHT---SHHH
T ss_pred             ----------------------------HHHHHHHhCCHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHhc---CHHH
Confidence                                        348999999999999999999988777899999999999999887   9999


Q ss_pred             hhhhhhe-eccCC
Q 018632          341 YEVSNFQ-ILNKH  352 (353)
Q Consensus       341 ~egi~af-l~~~~  352 (353)
                      +||+++| ++||+
T Consensus       265 ~eg~~Af~~ekR~  277 (291)
T 2fbm_A          265 IESMLKIPLLGYK  277 (291)
T ss_dssp             HHHHHTC------
T ss_pred             HHHHHHHHhcCCC
Confidence            9999999 99875

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=2.7e-53  Score=393.41  Aligned_cols=252  Identities=22%  Similarity=0.294  Sum_probs=204.8

Q ss_pred             cCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCCh
Q 018632           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKL  105 (353)
Q Consensus        30 ~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~  105 (353)
                      ...++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++.........
T Consensus         5 ~~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~   84 (276)
T 2j5i_A            5 EGRWKTVKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPE   84 (276)
T ss_dssp             TTCCSSEEEEEETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCT
T ss_pred             cCCCceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchh
Confidence            3445579999999999999999999999999999999999999999999998    889999999999987543211111


Q ss_pred             HHHHHHHHHHHHH-HHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          106 EECKDFFRTLYSF-IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       106 ~~~~~~~~~~~~l-~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      .....+......+ +..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  164 (276)
T 2j5i_A           85 ILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGH  164 (276)
T ss_dssp             THHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCH
Confidence            1122232333343 667889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . |++|++||+.++|+||+++||||+|+|++++.+.+.                                          
T Consensus       165 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------  202 (276)
T 2j5i_A          165 RQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTI------------------------------------------  202 (276)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHH------------------------------------------
T ss_pred             HHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999887765443                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHh--hhcCCCC-Ch
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQG--VSRLISG-DF  340 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~--~~~~~~~-d~  340 (353)
                                               +++++|++.||.+++.+|++++.....+++++++.|...+...  +.   ++ |+
T Consensus       203 -------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---s~~d~  254 (276)
T 2j5i_A          203 -------------------------ELARNLLEKNPVVLRAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLD---TEGGR  254 (276)
T ss_dssp             -------------------------HHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC--------
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcC---ChHHH
Confidence                                     4489999999999999999999988889999999888776554  44   88 99


Q ss_pred             hhhhhheeccC
Q 018632          341 YEVSNFQILNK  351 (353)
Q Consensus       341 ~egi~afl~~~  351 (353)
                      +||+++|++||
T Consensus       255 ~eg~~AF~ekr  265 (276)
T 2j5i_A          255 EQGMKQFLDDK  265 (276)
T ss_dssp             -----------
T ss_pred             HHHHHHHHhcc
Confidence            99999999998

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=3.6e-53  Score=389.72  Aligned_cols=249  Identities=19%  Similarity=0.239  Sum_probs=221.9

Q ss_pred             CCceEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           33 CNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~ln-rp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      +..|.++++++|++|||| ||+++|+||.+|+.+|.++++.++.|+. ++    |.|++||+|+|++++...........
T Consensus         4 ~~~i~~~~~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~~-r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (261)
T 2gtr_A            4 YRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRE   82 (261)
T ss_dssp             CSSEEEEEETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSSC-SCEEEEESSSCSBCEECHHHHHHHHHHCHHHH
T ss_pred             cceEEEEEeCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCCC-EEEEEecCCCccccccCchhhhhccccchhhH
Confidence            456889999999999999 6999999999999999999999998874 65    88999999999998865321121222


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ...+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  162 (261)
T 2gtr_A           83 STKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASA  162 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHHH
Confidence            334455667788899999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|++||+.++|+||+++||||+|+|++++.+.+.                                             
T Consensus       163 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  197 (261)
T 2gtr_A          163 NEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVM---------------------------------------------  197 (261)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHH---------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999988865443                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||+++
T Consensus       198 ----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~a  252 (261)
T 2gtr_A          198 ----------------------VRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWG---SAQGMDSMLK  252 (261)
T ss_dssp             ----------------------HHHHHHHTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH---STTTTHHHHH
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  348999999999999999999988777899999999999999988   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |++||+
T Consensus       253 f~ekr~  258 (261)
T 2gtr_A          253 YLQRKI  258 (261)
T ss_dssp             HHHHHH
T ss_pred             HHccCC
Confidence            999874

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=4.4e-53  Score=393.42  Aligned_cols=243  Identities=18%  Similarity=0.213  Sum_probs=226.9

Q ss_pred             eEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           36 VLVEGK--ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        36 v~~~~~--~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      |.++++  ++|++|+||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++..   ..+.+...
T Consensus        26 v~~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~---~~~~~~~~  102 (286)
T 3myb_A           26 LLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRA---EPSREYYE  102 (286)
T ss_dssp             SEEEEECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHS---SCCHHHHH
T ss_pred             EEEEEecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhc---cccHHHHH
Confidence            899999  9999999999999999999999999999999999999988    88999999999999865   23445566


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      .+...++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|++++|.. |++
T Consensus       103 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~  181 (286)
T 3myb_A          103 KLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFE  181 (286)
T ss_dssp             HHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHHH
Confidence            777888899999999999999999999999999999999999999999999999999999 788899999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      |++||+.++|+||+++||||+|+|++++.+.+.                                               
T Consensus       182 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~-----------------------------------------------  214 (286)
T 3myb_A          182 MLVTGEFVSADDAKGLGLVNRVVAPKALDDEIE-----------------------------------------------  214 (286)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH-----------------------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999988875444                                               


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                                          +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||+++|+
T Consensus       215 --------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~egi~aFl  271 (286)
T 3myb_A          215 --------------------AMVSKIVAKPRAAVAMGKALFYRQIETDIESAYADAGTTMACNMM---DPSALEGVSAFL  271 (286)
T ss_dssp             --------------------HHHHHHHHSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH---SHHHHHHHHHHH
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence                                348999999999999999999999889999999999999999998   999999999999


Q ss_pred             ccCC
Q 018632          349 LNKH  352 (353)
Q Consensus       349 ~~~~  352 (353)
                      +||+
T Consensus       272 ekr~  275 (286)
T 3myb_A          272 EKRR  275 (286)
T ss_dssp             TTSC
T ss_pred             ccCC
Confidence            9986

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=2.7e-54  Score=396.88  Aligned_cols=246  Identities=21%  Similarity=0.238  Sum_probs=203.7

Q ss_pred             CcCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCC
Q 018632           29 TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK  104 (353)
Q Consensus        29 ~~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~  104 (353)
                      ++.+++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...... .
T Consensus         6 ~~~~m~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~   84 (262)
T 3r9q_A            6 SEEMQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGN-E   84 (262)
T ss_dssp             ----CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSC-C
T ss_pred             CcccCCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChh-h
Confidence            34556679999999999999999999999999999999999999999999998    889999999999988653211 1


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       105 ~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      ...     .....+...+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        85 ~~~-----~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  159 (262)
T 3r9q_A           85 LHP-----HGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGH  159 (262)
T ss_dssp             CCT-----TSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCH
T ss_pred             HHH-----hhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCH
Confidence            000     011123345668999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . |++|++||+.++|+||+++||||+|+|++++.+.+.                                          
T Consensus       160 ~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------  197 (262)
T 3r9q_A          160 SRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAE------------------------------------------  197 (262)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCCcCCHHHHHHcCCccEecChhHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999999875444                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                                               +++++|++.||.+++.+|++++.....+++++++.|.. +..++.   + |++||
T Consensus       198 -------------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~---s-d~~Eg  247 (262)
T 3r9q_A          198 -------------------------TLAAEIAAFPQQCVRADRDSAIAQWGMAEEAALDNEFG-SIERVA---T-EALEG  247 (262)
T ss_dssp             -------------------------HHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHT-HHHHHH---C------
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHH-HHHHhc---c-HHHHH
Confidence                                     34899999999999999999999999999999999999 888887   8 99999


Q ss_pred             hhheeccCC
Q 018632          344 SNFQILNKH  352 (353)
Q Consensus       344 i~afl~~~~  352 (353)
                      ++||++||+
T Consensus       248 ~~AF~ekr~  256 (262)
T 3r9q_A          248 AGRFAAGEG  256 (262)
T ss_dssp             ---------
T ss_pred             HHHHHcCCC
Confidence            999999986

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=6.4e-53  Score=388.89  Aligned_cols=247  Identities=17%  Similarity=0.174  Sum_probs=224.2

Q ss_pred             cCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----C-CCCCcccCcchhhHHHhhhcCC
Q 018632           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----G-SGRAFCAGGDIVSLYHFMNQGK  104 (353)
Q Consensus        30 ~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g-~g~~F~aG~Dl~~~~~~~~~~~  104 (353)
                      +..++.+.++.+++|++|||||| ++|+||.+|+.+|.++++.++.|+++++    | .|++||+|+|++++..    ..
T Consensus         5 ~~~~~~i~~~~~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~----~~   79 (265)
T 2ppy_A            5 ETKKQYLTVFKEDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS----AD   79 (265)
T ss_dssp             EEECSSEEEEEETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT----SC
T ss_pred             CCCCCeEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc----cc
Confidence            34456799999999999999999 8999999999999999999999999888    8 8899999999998753    11


Q ss_pred             hHHHHHHHHHH-HHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCce-EEeccCCCcccccCccHHHHHhhcC
Q 018632          105 LEECKDFFRTL-YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLP  182 (353)
Q Consensus       105 ~~~~~~~~~~~-~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a-~f~~pe~~~G~~p~~g~~~~l~r~~  182 (353)
                       .....+...+ ..++..+.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|++++
T Consensus        80 -~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~v  158 (265)
T 2ppy_A           80 -PRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLI  158 (265)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHh
Confidence             2223344455 678889999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 018632          183 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  261 (353)
Q Consensus       183 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (353)
                      |.. +++|++||+.++|+||+++||||+|+|++++.+.+.                                        
T Consensus       159 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------  198 (265)
T 2ppy_A          159 GYSRALDMNITGETITPQEALEIGLVNRVFPQAETRERTR----------------------------------------  198 (265)
T ss_dssp             CHHHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHH----------------------------------------
T ss_pred             CHHHHHHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHH----------------------------------------
Confidence            998 999999999999999999999999999888765444                                        


Q ss_pred             hcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 018632          262 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  341 (353)
Q Consensus       262 ~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~  341 (353)
                                                 +++++|++.+|.+++.+|++++.....+++++++.|...+..++.   ++|++
T Consensus       199 ---------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~  248 (265)
T 2ppy_A          199 ---------------------------EYARKLANSATYAVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFR---SEDAK  248 (265)
T ss_dssp             ---------------------------HHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SHHHH
T ss_pred             ---------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHH
Confidence                                       348999999999999999999998888999999999999999887   99999


Q ss_pred             hhhhheeccCC
Q 018632          342 EVSNFQILNKH  352 (353)
Q Consensus       342 egi~afl~~~~  352 (353)
                      ||+++|++||+
T Consensus       249 egi~af~ekr~  259 (265)
T 2ppy_A          249 EGLSAFLEKRQ  259 (265)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHHHHcCCC
Confidence            99999999986

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=3.9e-54  Score=402.59  Aligned_cols=251  Identities=21%  Similarity=0.196  Sum_probs=181.5

Q ss_pred             CCCceEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHh--hhcCC
Q 018632           32 LCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHF--MNQGK  104 (353)
Q Consensus        32 ~~~~v~~~~~~-~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~--~~~~~  104 (353)
                      .++.|.+++++ +|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...  .....
T Consensus        27 ~~~~v~~~~~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~  106 (298)
T 3qre_A           27 AQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTM  106 (298)
T ss_dssp             -CCSEEEEECTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------
T ss_pred             CCCeEEEEEeCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence            45779999999 999999999999999999999999999999999999988    889999999999988641  10100


Q ss_pred             h--HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcC
Q 018632          105 L--EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  182 (353)
Q Consensus       105 ~--~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~  182 (353)
                      .  .....+......++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v  186 (298)
T 3qre_A          107 AKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLT  186 (298)
T ss_dssp             --------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHS
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhc
Confidence            0  01122223345567788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 018632          183 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  261 (353)
Q Consensus       183 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (353)
                      |.. |++|++||+.++|+||+++||||+|+|++++.+.+.                                        
T Consensus       187 G~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~----------------------------------------  226 (298)
T 3qre_A          187 SWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRAL----------------------------------------  226 (298)
T ss_dssp             CHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHH----------------------------------------
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHH----------------------------------------
Confidence            999 999999999999999999999999999988875444                                        


Q ss_pred             hcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 018632          262 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDF  340 (353)
Q Consensus       262 ~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~-~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~  340 (353)
                                                 +++++|+++ ||.+++.+|++++.....+++++++.|...+..++.   ++|+
T Consensus       227 ---------------------------~~A~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~  276 (298)
T 3qre_A          227 ---------------------------EYAEDIARYCSPSSMAVIKRQVYGDATRDVVEATSHAEVLLREAMP---RPDV  276 (298)
T ss_dssp             ---------------------------HHHHHHHHHSCHHHHHHHHHHHHGGGGC-------------------------
T ss_pred             ---------------------------HHHHHHHccCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC---CHHH
Confidence                                       348999998 999999999999999999999999999999888887   9999


Q ss_pred             hhhhhheeccCC
Q 018632          341 YEVSNFQILNKH  352 (353)
Q Consensus       341 ~egi~afl~~~~  352 (353)
                      +||++||++||+
T Consensus       277 ~Egv~AF~ekR~  288 (298)
T 3qre_A          277 IEGIVSFLEKRP  288 (298)
T ss_dssp             ------------
T ss_pred             HHHHHHHHcCCC
Confidence            999999999986

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=5e-53  Score=392.24  Aligned_cols=251  Identities=21%  Similarity=0.255  Sum_probs=211.2

Q ss_pred             cCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCCh
Q 018632           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKL  105 (353)
Q Consensus        30 ~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~  105 (353)
                      +..++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++ +    |.|++||+|+|++++.... ..+.
T Consensus        22 ~~~~~~i~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~-~~~~   99 (280)
T 2f6q_A           22 SMGFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIP-PGGV   99 (280)
T ss_dssp             EEECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCC-TTHH
T ss_pred             cCCCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcC-cchh
Confidence            34456799999999999999999999999999999999999999999998 6    8899999999999875421 0111


Q ss_pred             HH-HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          106 EE-CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       106 ~~-~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      .. ...+...+.+++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  179 (280)
T 2f6q_A          100 EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSP  179 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCH
Confidence            11 12234456678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . |++|++||+.++|+||+++||||+|+|++++.+.+.                                          
T Consensus       180 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------  217 (280)
T 2f6q_A          180 AKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVW------------------------------------------  217 (280)
T ss_dssp             HHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHH------------------------------------------
Confidence            8 999999999999999999999999999998875444                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                                               +++++|++.+|.+++.+|++++.....+++++++.|.+.+..++.   ++|++||
T Consensus       218 -------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg  269 (280)
T 2f6q_A          218 -------------------------TRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWL---SDECTNA  269 (280)
T ss_dssp             -------------------------HHHHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHT---SHHHHC-
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                     348899999999999999999988777899999999999999887   9999999


Q ss_pred             hhheeccCC
Q 018632          344 SNFQILNKH  352 (353)
Q Consensus       344 i~afl~~~~  352 (353)
                      +++|++||+
T Consensus       270 ~~af~ekR~  278 (280)
T 2f6q_A          270 VVNFLSRKS  278 (280)
T ss_dssp             ---------
T ss_pred             HHHHHccCC
Confidence            999999986

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=4.5e-53  Score=389.78  Aligned_cols=243  Identities=24%  Similarity=0.264  Sum_probs=214.9

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++ ...   .   ...
T Consensus         8 ~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~---~---~~~   80 (265)
T 3rsi_A            8 ARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGW---M---VRD   80 (265)
T ss_dssp             -CCEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----------------
T ss_pred             CCcEEEEEECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-ccc---c---cch
Confidence            4579999999999999999999999999999999999999999999988    8899999999998 211   1   111


Q ss_pred             HHHHHHHHH-HHHHH-h--hCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          109 KDFFRTLYS-FIYLL-G--THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       109 ~~~~~~~~~-l~~~l-~--~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      ..+...... ++..+ .  .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  160 (265)
T 3rsi_A           81 GSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPY  160 (265)
T ss_dssp             ----CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCH
T ss_pred             HHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence            123223345 77888 8  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . +++|++||+.++|+||+++||||+|+|++++.+.+.                                          
T Consensus       161 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------  198 (265)
T 3rsi_A          161 TKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKAR------------------------------------------  198 (265)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999999875444                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                                               +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||
T Consensus       199 -------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~eg  250 (265)
T 3rsi_A          199 -------------------------SLADRIVRNGPLAVRNAKEAIVRSGWLAEEDARAIEARLTRPVIT---SADAREG  250 (265)
T ss_dssp             -------------------------HHHHHHHTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHH
Confidence                                     348999999999999999999999889999999999999999998   9999999


Q ss_pred             hhheeccCC
Q 018632          344 SNFQILNKH  352 (353)
Q Consensus       344 i~afl~~~~  352 (353)
                      +++|++||+
T Consensus       251 ~~af~ekr~  259 (265)
T 3rsi_A          251 LAAFKEKRE  259 (265)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHcCCC
Confidence            999999986

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=1.2e-52  Score=389.05  Aligned_cols=248  Identities=19%  Similarity=0.244  Sum_probs=220.8

Q ss_pred             CCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcC---C
Q 018632           33 CNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQG---K  104 (353)
Q Consensus        33 ~~~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~---~  104 (353)
                      ++.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++.......   +
T Consensus         2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   81 (275)
T 1dci_A            2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccch
Confidence            34688887 57899999999999999999999999999999999999988    8899999999999986532111   1


Q ss_pred             h----HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhh
Q 018632          105 L----EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH  180 (353)
Q Consensus       105 ~----~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r  180 (353)
                      .    .....+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r  161 (275)
T 1dci_A           82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPK  161 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGG
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHH
Confidence            1    112233455677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChH-H-HHHHHhcCCCCCHHHHHHcCccceecCC-CChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHH
Q 018632          181 LPGH-L-GEFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  257 (353)
Q Consensus       181 ~~g~-~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (353)
                      ++|. . |++|++||+.++|+||+++||||+|+|+ +++.+.+.                                    
T Consensus       162 ~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~------------------------------------  205 (275)
T 1dci_A          162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAF------------------------------------  205 (275)
T ss_dssp             TCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHH------------------------------------
T ss_pred             HhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHH------------------------------------
Confidence            9998 8 9999999999999999999999999998 77654333                                    


Q ss_pred             HHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCC
Q 018632          258 IVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLIS  337 (353)
Q Consensus       258 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~  337 (353)
                                                     +++++|++.||.+++.+|++++.....+++++++.|...+..++.   +
T Consensus       206 -------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s  251 (275)
T 1dci_A          206 -------------------------------ALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQ---T  251 (275)
T ss_dssp             -------------------------------HHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS---S
T ss_pred             -------------------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---C
Confidence                                           448999999999999999999999888999999999999988887   9


Q ss_pred             CChhhhhhheecc
Q 018632          338 GDFYEVSNFQILN  350 (353)
Q Consensus       338 ~d~~egi~afl~~  350 (353)
                      +|++||+++|++|
T Consensus       252 ~d~~eg~~af~ek  264 (275)
T 1dci_A          252 QDIIKSVQAAMEK  264 (275)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999998

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=7.5e-54  Score=396.93  Aligned_cols=252  Identities=20%  Similarity=0.260  Sum_probs=217.6

Q ss_pred             cCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhh--cC
Q 018632           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMN--QG  103 (353)
Q Consensus        30 ~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~--~~  103 (353)
                      .+|++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.....  ..
T Consensus         7 ~~m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   86 (274)
T 3tlf_A            7 VDSFDTIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYE   86 (274)
T ss_dssp             -CCCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC-------------
T ss_pred             CCcCCceEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccc
Confidence            4466789999999999999999999999999999999999999999999988    88999999999998865321  00


Q ss_pred             -ChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcC
Q 018632          104 -KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  182 (353)
Q Consensus       104 -~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~  182 (353)
                       ........+..++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~v  165 (274)
T 3tlf_A           87 RPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVL  165 (274)
T ss_dssp             -CTTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTS
T ss_pred             cchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHh
Confidence             0000011122334567778899999999999999999999999999999999999999999999999 99999999999


Q ss_pred             hHH-HHHHHhcCC--CCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHH
Q 018632          183 GHL-GEFLALTGA--KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV  259 (353)
Q Consensus       183 g~~-a~~l~ltG~--~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (353)
                      |.. |++|++||+  .++|+||+++||||+|+|++++.+.+.                                      
T Consensus       166 G~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------  207 (274)
T 3tlf_A          166 PRSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAH--------------------------------------  207 (274)
T ss_dssp             CHHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHH--------------------------------------
T ss_pred             CHHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHH--------------------------------------
Confidence            999 999999999  999999999999999999988875444                                      


Q ss_pred             HHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCC
Q 018632          260 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD  339 (353)
Q Consensus       260 ~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d  339 (353)
                                                   +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|
T Consensus       208 -----------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d  255 (274)
T 3tlf_A          208 -----------------------------EIADIVNSNAPLAVRGTRLAILKGLNVPLHEAEILAETFRERVLR---TED  255 (274)
T ss_dssp             -----------------------------HHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SHH
T ss_pred             -----------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHH
Confidence                                         448999999999999999999999999999999999999999997   999


Q ss_pred             hhhhhhheeccCC
Q 018632          340 FYEVSNFQILNKH  352 (353)
Q Consensus       340 ~~egi~afl~~~~  352 (353)
                      ++||+++|++||+
T Consensus       256 ~~eg~~af~ekr~  268 (274)
T 3tlf_A          256 AAEGPRAFVEKRQ  268 (274)
T ss_dssp             HHHHHHHHHTTSC
T ss_pred             HHHHHHHHhcCCC
Confidence            9999999999986

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=6.1e-53  Score=385.87  Aligned_cols=243  Identities=15%  Similarity=0.204  Sum_probs=201.5

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----C-CCCCcccCcchhhHHHhhhcCChHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----G-SGRAFCAGGDIVSLYHFMNQGKLEECKD  110 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~~  110 (353)
                      |.++++++|++||||||++.|+||.+|+.+|.++++.++.|+++++    | .|++||+|+|++++...   .+.+....
T Consensus         2 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~---~~~~~~~~   78 (250)
T 2a7k_A            2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQL---SRSEDIEE   78 (250)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC----CHHHHHH
T ss_pred             eEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhc---CchhhHHH
Confidence            6788899999999999999999999999999999999999999888    8 89999999999987642   12222234


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHH
Q 018632          111 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  189 (353)
Q Consensus       111 ~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l  189 (353)
                      +...+++++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|.. ++++
T Consensus        79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l  157 (250)
T 2a7k_A           79 WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEI  157 (250)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHH
Confidence            55567788899999999999999999999999999999999999999999999999999999999 999999998 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHH
Q 018632          190 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  269 (353)
Q Consensus       190 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (353)
                      ++||+.++|+||+++||||+|+|++++.+.+.                                                
T Consensus       158 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------------  189 (250)
T 2a7k_A          158 IYQCQSLDAPRCVDYRLVNQVVESSALLDAAI------------------------------------------------  189 (250)
T ss_dssp             HHHCCCBCHHHHHHHTCCSEEECHHHHHHHHH------------------------------------------------
T ss_pred             HHcCCcccHHHHHHcCCcceecCHHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999877764433                                                


Q ss_pred             HHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 018632          270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL  349 (353)
Q Consensus       270 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~  349 (353)
                                         +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||+++|++
T Consensus       190 -------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~af~e  247 (250)
T 2a7k_A          190 -------------------TQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQ---ARDAQGHFKNVLG  247 (250)
T ss_dssp             -------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred             -------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHh
Confidence                               448999999999999999999988888899999999999888877   9999999999999


Q ss_pred             cCC
Q 018632          350 NKH  352 (353)
Q Consensus       350 ~~~  352 (353)
                      ||+
T Consensus       248 kr~  250 (250)
T 2a7k_A          248 KKY  250 (250)
T ss_dssp             ---
T ss_pred             cCC
Confidence            874

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1e-53  Score=394.16  Aligned_cols=246  Identities=17%  Similarity=0.142  Sum_probs=220.6

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|+.||+|+|++++..........  
T Consensus         8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~--   85 (265)
T 3swx_A            8 YETLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASL--   85 (265)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCC--
T ss_pred             CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHH--
Confidence            4679999999999999999999999999999999999999999999988    8888899999999987642211110  


Q ss_pred             HHHHHHHHHHHHHH-hhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          109 KDFFRTLYSFIYLL-GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       109 ~~~~~~~~~l~~~l-~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                        +......++..+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |
T Consensus        86 --~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  163 (265)
T 3swx_A           86 --TPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNA  163 (265)
T ss_dssp             --CCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHH
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHH
Confidence              111222345567 899999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|++||+.++|+||+++||||+|+|++++.+.+.                                             
T Consensus       164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  198 (265)
T 3swx_A          164 MRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAI---------------------------------------------  198 (265)
T ss_dssp             HHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHH---------------------------------------------
T ss_pred             HHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999999875444                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||+++
T Consensus       199 ----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~a  253 (265)
T 3swx_A          199 ----------------------AIAQTIARQAPLGVQATLRNARLAVREGDAAAEEQLVPTVRELFT---SEDATLGVQA  253 (265)
T ss_dssp             ----------------------HHHHHHHHSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT---SHHHHHHHHH
T ss_pred             ----------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  348999999999999999999999888999999999999999998   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |++||+
T Consensus       254 f~ekr~  259 (265)
T 3swx_A          254 FLSRTT  259 (265)
T ss_dssp             HHTTCC
T ss_pred             HhcCCC
Confidence            999986

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=9.7e-53  Score=386.22  Aligned_cols=243  Identities=23%  Similarity=0.282  Sum_probs=220.0

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      ..|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++...    ... ..
T Consensus         5 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~-~~   79 (258)
T 2pbp_A            5 VSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKD----DPI-RL   79 (258)
T ss_dssp             CSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTC----CHH-HH
T ss_pred             ceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcc----cch-hH
Confidence            358889999999999999999999999999999999999999999888    889999999999987542    111 12


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      .+...+ +++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++
T Consensus        80 ~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  158 (258)
T 2pbp_A           80 EWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALE  158 (258)
T ss_dssp             HHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             HHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHHH
Confidence            222333 567788999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      +++||+.++|+||+++||||+|+|++++.+.+.                                               
T Consensus       159 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~-----------------------------------------------  191 (258)
T 2pbp_A          159 WLWTGARMSAKEAEQLGIVNRVVSPELLMEETM-----------------------------------------------  191 (258)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHH-----------------------------------------------
T ss_pred             HHHcCCccCHHHHHHcCCcceeeChHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999999888765443                                               


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                                          +++++|++.+|.+++.+|++++.....+++++++.|...+..++.   ++|++||+++|+
T Consensus       192 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~af~  248 (258)
T 2pbp_A          192 --------------------RLAGRLAEQPPLALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFA---SEDQKEGMAAFL  248 (258)
T ss_dssp             --------------------HHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT---SHHHHHHHHHHH
T ss_pred             --------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence                                348999999999999999999999889999999999999999887   999999999999


Q ss_pred             ccCC
Q 018632          349 LNKH  352 (353)
Q Consensus       349 ~~~~  352 (353)
                      +||+
T Consensus       249 ekr~  252 (258)
T 2pbp_A          249 EKRK  252 (258)
T ss_dssp             TTSC
T ss_pred             ccCC
Confidence            9985

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=9e-53  Score=391.54  Aligned_cols=246  Identities=16%  Similarity=0.170  Sum_probs=223.9

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      +..|.++++++|++|+||||+++|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++...   .+.+..
T Consensus        32 ~~~v~~~~~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~---~~~~~~  108 (287)
T 2vx2_A           32 PRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEE---QGRDYH  108 (287)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGG---GCHHHH
T ss_pred             CcceEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcc---cchhHH
Confidence            3578999999999999999999999999999999999999999999888    889999999999887542   123334


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |++++|.. |+
T Consensus       109 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~  187 (287)
T 2vx2_A          109 AEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVAL  187 (287)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHH
Confidence            45556677888999999999999999999999999999999999999999999999999999999999 99999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||+.++|+||+++||||+|+|++++.+.+.                                              
T Consensus       188 ~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  221 (287)
T 2vx2_A          188 EMLFTGEPISAQEALLHGLLSKVVPEAELQEETM----------------------------------------------  221 (287)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH----------------------------------------------
T ss_pred             HHHHhCCCCCHHHHHHCCCcceecCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988765444                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.+|.+++.+|++++.....+++++++.|...+..++.   ++|++||+++|
T Consensus       222 ---------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~egi~af  277 (287)
T 2vx2_A          222 ---------------------RIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLA---LRDGQEGITAF  277 (287)
T ss_dssp             ---------------------HHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT---SHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                 348999999999999999999998888999999999999999887   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      ++||+
T Consensus       278 ~ekr~  282 (287)
T 2vx2_A          278 LQKRK  282 (287)
T ss_dssp             HTTSC
T ss_pred             HcCCC
Confidence            99986

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=5.2e-54  Score=394.59  Aligned_cols=245  Identities=21%  Similarity=0.203  Sum_probs=190.2

Q ss_pred             cCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCCh
Q 018632           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKL  105 (353)
Q Consensus        30 ~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~  105 (353)
                      ...++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|+.||+|+|++++.........
T Consensus         8 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   87 (258)
T 3lao_A            8 NSGPGRVTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGF   87 (258)
T ss_dssp             CCSSCCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBC
T ss_pred             CCCCCeEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhH
Confidence            3456679999999999999999999999999999999999999999999988    888889999999998764221111


Q ss_pred             HHHHHHHHHHHHHHHHH-hhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          106 EECKDFFRTLYSFIYLL-GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       106 ~~~~~~~~~~~~l~~~l-~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                          .+...+.+++..+ ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        88 ----~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  163 (258)
T 3lao_A           88 ----RYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGW  163 (258)
T ss_dssp             ----CCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCH
T ss_pred             ----HHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence                1112223455677 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . |++|++||++++|+||+++||||+|+|++++.+.+.                                          
T Consensus       164 ~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------  201 (258)
T 3lao_A          164 TDAMRYILTGDEFDADEALRMRLLTEVVEPGEELARAL------------------------------------------  201 (258)
T ss_dssp             HHHHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999998875444                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                                               +++++|+++||.+++.+|++++.....+++++++.|...+..++.   ++|++||
T Consensus       202 -------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg  253 (258)
T 3lao_A          202 -------------------------EYAERIARAAPLAVRAALQSAFQGRDEGDDAALSRVNESLAALIG---SEDVREG  253 (258)
T ss_dssp             -------------------------HHHHHHHHSCHHHHHHHHHHHHHHTC-----------------------------
T ss_pred             -------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                     348999999999999999999999889999999999999999887   9999999


Q ss_pred             hhhee
Q 018632          344 SNFQI  348 (353)
Q Consensus       344 i~afl  348 (353)
                      +++|+
T Consensus       254 ~~AF~  258 (258)
T 3lao_A          254 VLAMV  258 (258)
T ss_dssp             -----
T ss_pred             HHhhC
Confidence            99996

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=1.5e-52  Score=386.88  Aligned_cols=248  Identities=21%  Similarity=0.200  Sum_probs=217.4

Q ss_pred             CCCceEEE----EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcC
Q 018632           32 LCNQVLVE----GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQG  103 (353)
Q Consensus        32 ~~~~v~~~----~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~  103 (353)
                      |...+.++    .+++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.......
T Consensus         5 m~~~v~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~   84 (267)
T 3oc7_A            5 MDALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPS   84 (267)
T ss_dssp             CCSSEEEECHHHHSSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------
T ss_pred             cccccCCCCccceeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCch
Confidence            44578888    899999999999999999999999999999999999999988    8899999999999886211111


Q ss_pred             C-hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcC
Q 018632          104 K-LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  182 (353)
Q Consensus       104 ~-~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~  182 (353)
                      . ......+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+ ++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~v  163 (267)
T 3oc7_A           85 SAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KL  163 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TS
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-Hh
Confidence            1 111234667778899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 018632          183 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  261 (353)
Q Consensus       183 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (353)
                      |.. +.+|++||+.++|+||+++||||+|  ++++.+.+.                                        
T Consensus       164 G~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~----------------------------------------  201 (267)
T 3oc7_A          164 SARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAID----------------------------------------  201 (267)
T ss_dssp             CHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHH----------------------------------------
T ss_pred             CHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHH----------------------------------------
Confidence            999 9999999999999999999999999  667765443                                        


Q ss_pred             hcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 018632          262 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  341 (353)
Q Consensus       262 ~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~  341 (353)
                                                 +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++
T Consensus       202 ---------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~  251 (267)
T 3oc7_A          202 ---------------------------QLVTDVGRGSPQGLAASKALTTAAVLERFDRDAERLAEESARLFV---SDEAR  251 (267)
T ss_dssp             ---------------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SHHHH
T ss_pred             ---------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHH
Confidence                                       448999999999999999999999888999999999999999998   99999


Q ss_pred             hhhhheeccCC
Q 018632          342 EVSNFQILNKH  352 (353)
Q Consensus       342 egi~afl~~~~  352 (353)
                      ||+++|++||+
T Consensus       252 eg~~af~ekr~  262 (267)
T 3oc7_A          252 EGMLAFLEKRS  262 (267)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHcCCC
Confidence            99999999986

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=2.6e-52  Score=382.40  Aligned_cols=244  Identities=24%  Similarity=0.256  Sum_probs=218.4

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDF  111 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  111 (353)
                      |.++ +++|++||||||++.|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++..... .+.......
T Consensus         2 i~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~   79 (253)
T 1uiy_A            2 VQVE-KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTE-LGAEENYRH   79 (253)
T ss_dssp             EEEE-CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTT-SCHHHHHHH
T ss_pred             EEEE-eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhccc-CCchhHHHH
Confidence            5678 89999999999999999999999999999999999999888    88899999999998865310 011111111


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHH
Q 018632          112 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  190 (353)
Q Consensus       112 ~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~  190 (353)
                      ...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|.. +++|+
T Consensus        80 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~  158 (253)
T 1uiy_A           80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLL  158 (253)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHH
Confidence            12266788899999999999999999999999999999999999999999999999999999 99999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHH
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  270 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (353)
                      +||+.++|+||+++||||+|+|++++.+.+.                                                 
T Consensus       159 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------  189 (253)
T 1uiy_A          159 LTGRLVEAREAKALGLVNRIAPPGKALEEAK-------------------------------------------------  189 (253)
T ss_dssp             HHCCEEEHHHHHHHTSCSEEECTTCHHHHHH-------------------------------------------------
T ss_pred             HhCCccCHHHHHHCCCcceecChhHHHHHHH-------------------------------------------------
Confidence            9999999999999999999999998875444                                                 


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018632          271 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  350 (353)
Q Consensus       271 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~  350 (353)
                                        +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||+++|++|
T Consensus       190 ------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~eg~~af~~k  248 (253)
T 1uiy_A          190 ------------------ALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRE---TGDLAEGIRAFFEK  248 (253)
T ss_dssp             ------------------HHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGG---CHHHHHHHHHHHTT
T ss_pred             ------------------HHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHhCc
Confidence                              348899999999999999999999889999999999999999887   99999999999999


Q ss_pred             CC
Q 018632          351 KH  352 (353)
Q Consensus       351 ~~  352 (353)
                      |+
T Consensus       249 r~  250 (253)
T 1uiy_A          249 RP  250 (253)
T ss_dssp             SC
T ss_pred             CC
Confidence            85

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=5.6e-53  Score=387.06  Aligned_cols=241  Identities=20%  Similarity=0.275  Sum_probs=217.7

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      |++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++....   ....
T Consensus         5 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~~~~   81 (256)
T 3trr_A            5 MADEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGE---AVLS   81 (256)
T ss_dssp             CCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTC---CCEE
T ss_pred             CCCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhcccc---chhh
Confidence            44579999999999999999999999999999999999999999999998    8889999999999987531   1110


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ...+     .+ ..+ .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus        82 ~~~~-----~~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  154 (256)
T 3trr_A           82 ERGL-----GF-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVA  154 (256)
T ss_dssp             TTEE-----TT-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred             hhhh-----hH-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHH
Confidence            0011     11 233 89999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|++||+.++|+||+++||||+|+|++++.+.+.                                             
T Consensus       155 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  189 (256)
T 3trr_A          155 MELALTGESFTAEDAAKYGFINRLVDDGQALDTAL---------------------------------------------  189 (256)
T ss_dssp             HHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHH---------------------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999999875444                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||+++
T Consensus       190 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~~a  244 (256)
T 3trr_A          190 ----------------------ELAAKITANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIFV---SEDAKEGAKA  244 (256)
T ss_dssp             ----------------------HHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHT---SHHHHHHHHH
T ss_pred             ----------------------HHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  448999999999999999999999999999999999999999998   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |++||+
T Consensus       245 f~ekr~  250 (256)
T 3trr_A          245 FAEKRA  250 (256)
T ss_dssp             HHTTSC
T ss_pred             HhcCCC
Confidence            999986

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=4.7e-54  Score=396.25  Aligned_cols=247  Identities=21%  Similarity=0.287  Sum_probs=220.8

Q ss_pred             CCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChH
Q 018632           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        31 ~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      .|++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++......... 
T Consensus         4 ~m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-   82 (265)
T 3qxz_A            4 SMVTELHEEIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRN-   82 (265)
T ss_dssp             --CCEEEEEEETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCS-
T ss_pred             CccceEEEEEECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHH-
Confidence            456789999999999999999999999999999999999999999999988    889999999999987653111111 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                         .++.. ..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        83 ---~~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (265)
T 3qxz_A           83 ---PDFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAV  158 (265)
T ss_dssp             ---SCCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHH
T ss_pred             ---HHHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence               11122 4567788999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      |++|++||+.++|+||+++||||+|+|++++.+.+.                                            
T Consensus       159 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  194 (265)
T 3qxz_A          159 AAELLLTGASFSAQRAVETGLANRCLPAGKVLGAAL--------------------------------------------  194 (265)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999877764433                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CchHHHHHHHHHHhhhcCCHHHH--HHHHHHHHHHhhhcCCCCChhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRFQTFDEC--LVREYRMSLQGVSRLISGDFYE  342 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~-~p~a~~~~k~~l~~~~~~~~~~~--l~~e~~~~~~~~~~~~~~d~~e  342 (353)
                                             +++++|+++ ||.+++.+|++++.....+++++  ++.|...+..++.   ++|++|
T Consensus       195 -----------------------~~a~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~---s~d~~e  248 (265)
T 3qxz_A          195 -----------------------RMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHLRLMG---SQDAAE  248 (265)
T ss_dssp             -----------------------HHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT---STHHHH
T ss_pred             -----------------------HHHHHHHccCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhC---ChHHHH
Confidence                                   458999999 99999999999999888888899  9999999999987   999999


Q ss_pred             hhhheeccCC
Q 018632          343 VSNFQILNKH  352 (353)
Q Consensus       343 gi~afl~~~~  352 (353)
                      |+++|++||+
T Consensus       249 gi~Af~ekr~  258 (265)
T 3qxz_A          249 GPRAFIDGRP  258 (265)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHcCCC
Confidence            9999999986

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=4.8e-53  Score=389.35  Aligned_cols=244  Identities=22%  Similarity=0.285  Sum_probs=210.8

Q ss_pred             CcCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCC
Q 018632           29 TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK  104 (353)
Q Consensus        29 ~~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~  104 (353)
                      ..++++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++....  ..
T Consensus        10 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~   87 (265)
T 3qxi_A           10 NGDTEPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGE--NV   87 (265)
T ss_dssp             -----CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------C--CC
T ss_pred             cCCCCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccc--hh
Confidence            34567789999999999999999999999999999999999999999999988    8889999999999876531  11


Q ss_pred             hHHHHHHHHHHHHH-HHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcCh
Q 018632          105 LEECKDFFRTLYSF-IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  183 (353)
Q Consensus       105 ~~~~~~~~~~~~~l-~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g  183 (353)
                      ....       ..+ +..+.. ||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        88 ~~~~-------~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  159 (265)
T 3qxi_A           88 VVEG-------RGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIP  159 (265)
T ss_dssp             EETT-------TEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSC
T ss_pred             hhhh-------hhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhC
Confidence            1000       011 223334 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHh
Q 018632          184 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  262 (353)
Q Consensus       184 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
                      .. |++|++||+.++|+||+++||||+|+|++++.+.+.                                         
T Consensus       160 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~-----------------------------------------  198 (265)
T 3qxi_A          160 YAIAMELALTGDNLSAERAHALGMVNVLAEPGAALDAAI-----------------------------------------  198 (265)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHH-----------------------------------------
Confidence            99 999999999999999999999999999999875444                                         


Q ss_pred             cCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018632          263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  342 (353)
Q Consensus       263 ~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  342 (353)
                                                +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++|
T Consensus       199 --------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~e  249 (265)
T 3qxi_A          199 --------------------------ALAEKITANGPLAVAATKRIITESRGWSLDTRFAQQMKILFPIFT---SNDAKE  249 (265)
T ss_dssp             --------------------------HHHHHHHTSCHHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHHH---CHHHHH
T ss_pred             --------------------------HHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHHHHH
Confidence                                      348999999999999999999999989999999999999999998   999999


Q ss_pred             hhhheeccCC
Q 018632          343 VSNFQILNKH  352 (353)
Q Consensus       343 gi~afl~~~~  352 (353)
                      |+++|++||+
T Consensus       250 g~~af~ekr~  259 (265)
T 3qxi_A          250 GAIAFAEKRP  259 (265)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHHcCCC
Confidence            9999999986

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=2.7e-52  Score=384.36  Aligned_cols=245  Identities=17%  Similarity=0.170  Sum_probs=220.8

Q ss_pred             CceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           34 NQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        34 ~~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      +.|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++ +..... ++.+..
T Consensus        10 ~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~-~~~~~~   86 (264)
T 1wz8_A           10 PGLAFAWPRPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMR-ASHEAL   86 (264)
T ss_dssp             TTEEEEEEETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHH-HCHHHH
T ss_pred             CeEEEEEccCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccc-cchHHH
Confidence            3588998 9999999999999 999999999999999999999999988    8889999999999 654211 011222


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+...+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus        87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  166 (264)
T 1wz8_A           87 LRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK  166 (264)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence            33456677888999999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||+.++|+||+++||||+|+|++++.+.+.                                              
T Consensus       167 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  200 (264)
T 1wz8_A          167 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKAL----------------------------------------------  200 (264)
T ss_dssp             HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHH----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCceeecChhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999888765444                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.+|.+++.+|++++..... ++++++.|...+..++.   ++|++||+++|
T Consensus       201 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~---s~d~~eg~~af  255 (264)
T 1wz8_A          201 ---------------------EVAERLAQGPKEALHHTKHALNHWYRS-FLPHFELSLALEFLGFS---GKELEEGLKAL  255 (264)
T ss_dssp             ---------------------HHHHHHHTSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHGGG---SHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc---ChHHHHHHHHH
Confidence                                 348999999999999999999988888 99999999999999887   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      ++||+
T Consensus       256 ~ekr~  260 (264)
T 1wz8_A          256 KEKRP  260 (264)
T ss_dssp             HTTSC
T ss_pred             HccCC
Confidence            99986

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=1.4e-52  Score=387.66  Aligned_cols=246  Identities=20%  Similarity=0.275  Sum_probs=216.4

Q ss_pred             cCCCCceEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCC
Q 018632           30 DDLCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK  104 (353)
Q Consensus        30 ~~~~~~v~~~~~~-~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~  104 (353)
                      ++.++.|.+++++ +|++||||||+ +|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++....  .+
T Consensus         9 ~~~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~   85 (272)
T 3qk8_A            9 YQDFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETI--GD   85 (272)
T ss_dssp             GGGCTTEEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHH--HC
T ss_pred             CCCCCeEEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccc--cc
Confidence            3445679999986 89999999999 999999999999999999999999998    8899999999999986542  12


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       105 ~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      ......+...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  165 (272)
T 3qk8_A           86 YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGM  165 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence            33344566777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . |++|++||+.++|+||+++||||+|+|++++.+.+.                                          
T Consensus       166 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------  203 (272)
T 3qk8_A          166 AKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTAT------------------------------------------  203 (272)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999988875444                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHhhhcCCCCCh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF---QTFDECLVREYRMSLQGVSRLISGDF  340 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~---~~~~~~l~~e~~~~~~~~~~~~~~d~  340 (353)
                                               +++++|++.||.+++.+|++++....   ..++..++.|    ..++.   ++|+
T Consensus       204 -------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~---s~d~  251 (272)
T 3qk8_A          204 -------------------------RLAENLAQGAQNAIRWTKRSLNHWYRMFGPTFETSLGLE----FLGFT---GPDV  251 (272)
T ss_dssp             -------------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHTT---SSHH
T ss_pred             -------------------------HHHHHHHcCCHHHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHhC---CHHH
Confidence                                     44899999999999999999986654   3445555544    34555   9999


Q ss_pred             hhhhhheeccCC
Q 018632          341 YEVSNFQILNKH  352 (353)
Q Consensus       341 ~egi~afl~~~~  352 (353)
                      +||++||++||+
T Consensus       252 ~eg~~Af~ekR~  263 (272)
T 3qk8_A          252 QEGLAAHRQKRP  263 (272)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHcCCC
Confidence            999999999986

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=7e-53  Score=388.71  Aligned_cols=244  Identities=23%  Similarity=0.302  Sum_probs=215.7

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      +.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++........... 
T Consensus         9 ~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~-   87 (267)
T 3r9t_A            9 PGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDH-   87 (267)
T ss_dssp             CSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTC-
T ss_pred             CcEEEEEECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHH-
Confidence            569999999999999999999999999999999999999999999988    888 69999999999875321111100 


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+.   ...+ ....+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |+
T Consensus        88 ~~~~---~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  163 (267)
T 3r9t_A           88 PEWG---FAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAM  163 (267)
T ss_dssp             GGGC---GGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHH
T ss_pred             HhHH---HHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHH
Confidence            0000   0111 22389999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||+.++|+||+++||||+|+|++++.+.+.                                              
T Consensus       164 ~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  197 (267)
T 3r9t_A          164 RLLLTGEPLSAAAARDWGLINEVVEAGSVLDAAL----------------------------------------------  197 (267)
T ss_dssp             HHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHH----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999999875444                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHH---HHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRS---IREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS  344 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~---l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi  344 (353)
                                           +++++|+++||.+++.+|++   ++.....+++++++.|...+..++.   ++|++||+
T Consensus       198 ---------------------~~a~~la~~~p~a~~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~eg~  253 (267)
T 3r9t_A          198 ---------------------ALASAITVNAPLSVQASKRIAYGVDDGVVVGDEPGWDRTMREMRALLK---SEDAKEGP  253 (267)
T ss_dssp             ---------------------HHHHHHHTSCHHHHHHHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTT---SSHHHHHH
T ss_pred             ---------------------HHHHHHHhCChHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHH
Confidence                                 44899999999999999999   8888888999999999999999887   99999999


Q ss_pred             hheeccCC
Q 018632          345 NFQILNKH  352 (353)
Q Consensus       345 ~afl~~~~  352 (353)
                      ++|++||+
T Consensus       254 ~AF~ekR~  261 (267)
T 3r9t_A          254 RAFAEKRE  261 (267)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHcCCC
Confidence            99999986

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=2.6e-52  Score=383.63  Aligned_cols=244  Identities=24%  Similarity=0.331  Sum_probs=217.8

Q ss_pred             CCceEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCCh
Q 018632           33 CNQVLVEG---KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKL  105 (353)
Q Consensus        33 ~~~v~~~~---~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~  105 (353)
                      ++.+.++.   .++|++||||||+++|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++...    ..
T Consensus         3 ~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~   78 (260)
T 1mj3_A            3 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR----TF   78 (260)
T ss_dssp             CSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTC----CH
T ss_pred             cccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcc----cc
Confidence            45677887   78999999999999999999999999999999999999888    889999999999986431    11


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH
Q 018632          106 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL  185 (353)
Q Consensus       106 ~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~  185 (353)
                      .  ..+...+...+..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        79 ~--~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  156 (260)
T 1mj3_A           79 Q--DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKS  156 (260)
T ss_dssp             H--HHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHH
T ss_pred             h--HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence            1  11222223345678899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             -HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcC
Q 018632          186 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG  264 (353)
Q Consensus       186 -a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (353)
                       +++|++||+.++|+||+++||||+|+|++++.+.+.                                           
T Consensus       157 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------  193 (260)
T 1mj3_A          157 LAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAI-------------------------------------------  193 (260)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHH-------------------------------------------
T ss_pred             HHHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHH-------------------------------------------
Confidence             999999999999999999999999999988865443                                           


Q ss_pred             cCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 018632          265 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS  344 (353)
Q Consensus       265 ~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi  344 (353)
                                              +++++|++++|.+++.+|++++.....+++++++.|...+..++.   ++|++||+
T Consensus       194 ------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~egi  246 (260)
T 1mj3_A          194 ------------------------QCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFA---TDDRREGM  246 (260)
T ss_dssp             ------------------------HHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGG---SHHHHHHH
T ss_pred             ------------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHH
Confidence                                    448999999999999999999999888999999999999999987   99999999


Q ss_pred             hheeccCC
Q 018632          345 NFQILNKH  352 (353)
Q Consensus       345 ~afl~~~~  352 (353)
                      ++|++||+
T Consensus       247 ~af~~kr~  254 (260)
T 1mj3_A          247 SAFVEKRK  254 (260)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHcCCC
Confidence            99999985

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=3.9e-53  Score=393.81  Aligned_cols=248  Identities=16%  Similarity=0.173  Sum_probs=216.7

Q ss_pred             CCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCC-
Q 018632           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGK-  104 (353)
Q Consensus        31 ~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~-  104 (353)
                      ..++.|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++........ 
T Consensus         6 ~~~~~i~~~~~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~   84 (287)
T 3gkb_A            6 DAYSTLRVSSEHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQEL   84 (287)
T ss_dssp             -CCSSEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHH
T ss_pred             CCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchh
Confidence            34567999999999999999998 799999999999999999999999998    877 79999999998753210000 


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeC-ceEEeccCCCcccccCccHHHHHhhcCh
Q 018632          105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPG  183 (353)
Q Consensus       105 ~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~-~a~f~~pe~~~G~~p~~g~~~~l~r~~g  183 (353)
                      ......+...+..++..+..+||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|++++|
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG  164 (287)
T 3gkb_A           85 AASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVG  164 (287)
T ss_dssp             HHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhC
Confidence            000011223456788899999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHh
Q 018632          184 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  262 (353)
Q Consensus       184 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
                      .. |++|++||++++|+||+++||||+|+|++++.+.+.                                         
T Consensus       165 ~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~-----------------------------------------  203 (287)
T 3gkb_A          165 RNRALEVVLTADLFDAETAASYGWINRALPADELDEYVD-----------------------------------------  203 (287)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHH-----------------------------------------
Confidence            99 999999999999999999999999999887765443                                         


Q ss_pred             cCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018632          263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  342 (353)
Q Consensus       263 ~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  342 (353)
                                                +++++|++.||.+++.+|++++..   .+.++++.|...+..++.   ++|++|
T Consensus       204 --------------------------~lA~~la~~~p~a~~~~K~~l~~~---~~~~~l~~e~~~~~~~~~---s~d~~e  251 (287)
T 3gkb_A          204 --------------------------RVARNIAALPDGVIEAAKRSLPAD---DLKEGLLGENDAWAATFS---LPAAQQ  251 (287)
T ss_dssp             --------------------------HHHHHHHTSCTTHHHHHHHHSCCC---CCHHHHHHHHHHHHHHHT---SHHHHH
T ss_pred             --------------------------HHHHHHHcCCHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhC---CHHHHH
Confidence                                      448999999999999999999864   356999999999999987   999999


Q ss_pred             hhhheeccCC
Q 018632          343 VSNFQILNKH  352 (353)
Q Consensus       343 gi~afl~~~~  352 (353)
                      |+++|++||+
T Consensus       252 g~~AF~ekr~  261 (287)
T 3gkb_A          252 LISGGLKDGA  261 (287)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHhcCC
Confidence            9999999986

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=9.8e-53  Score=385.14  Aligned_cols=240  Identities=21%  Similarity=0.253  Sum_probs=200.7

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...         
T Consensus         8 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~---------   78 (256)
T 3pe8_A            8 SPVLLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDT---------   78 (256)
T ss_dssp             CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC------------
T ss_pred             CCcEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhh---------
Confidence            4569999999999999999999999999999999999999999999998    889999999999987642         


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                          ..+..+...+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |+
T Consensus        79 ----~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  154 (256)
T 3pe8_A           79 ----TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLAR  154 (256)
T ss_dssp             ----------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             ----HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHH
Confidence                1122334677899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||+.++|+||+++||||+|+|++++.+.+.                                              
T Consensus       155 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  188 (256)
T 3pe8_A          155 RMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAAR----------------------------------------------  188 (256)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHH----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999988875544                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.||.+++.+|++++.....+++++++.|...+...+....++|++|++++|
T Consensus       189 ---------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~af  247 (256)
T 3pe8_A          189 ---------------------RVAASIVGNNQKAVRALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASV  247 (256)
T ss_dssp             ---------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred             ---------------------HHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence                                 34899999999999999999999988899999999999987776555689999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      ++|++
T Consensus       248 lek~k  252 (256)
T 3pe8_A          248 IERGR  252 (256)
T ss_dssp             -----
T ss_pred             HhccC
Confidence            99986

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=8.3e-52  Score=380.85  Aligned_cols=245  Identities=18%  Similarity=0.201  Sum_probs=206.9

Q ss_pred             ceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhh--hcCChHH
Q 018632           35 QVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFM--NQGKLEE  107 (353)
Q Consensus        35 ~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~--~~~~~~~  107 (353)
                      .+.++. +++|++||||||++ |+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++....  ...+...
T Consensus         7 ~~~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   85 (263)
T 3l3s_A            7 GLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAF   85 (263)
T ss_dssp             -CEEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHH
T ss_pred             ceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHH
Confidence            455554 89999999999999 99999999999999999999999988    8999999999999876431  1223455


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ...+...+..++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|++++|.. |
T Consensus        86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~~A  164 (263)
T 3l3s_A           86 VTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGRRAV  164 (263)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCHHHH
Confidence            56677788899999999999999999999999999999999999999999999999999999 567899999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|++||+.++|+||+++||||+|+|++++.+.+.                                             
T Consensus       165 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  199 (263)
T 3l3s_A          165 TEMALTGATYDADWALAAGLINRILPEAALATHVA---------------------------------------------  199 (263)
T ss_dssp             HHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHH---------------------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999887765443                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||++|
T Consensus       200 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~Eg~~A  254 (263)
T 3l3s_A          200 ----------------------DLAGALAARNQAPLRRGLETLNRHLELPLEQAYALATPVMVEHFM---DPGRRHLDWI  254 (263)
T ss_dssp             ----------------------HHHHHHHSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC-------------
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  448999999999999999999999999999999999999999998   9999999999


Q ss_pred             eeccC
Q 018632          347 QILNK  351 (353)
Q Consensus       347 fl~~~  351 (353)
                      |.+..
T Consensus       255 f~~~~  259 (263)
T 3l3s_A          255 DEGHH  259 (263)
T ss_dssp             -----
T ss_pred             hhccC
Confidence            98753

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=3.5e-52  Score=385.14  Aligned_cols=242  Identities=21%  Similarity=0.236  Sum_probs=217.9

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHHHHHHHHHH
Q 018632           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  115 (353)
Q Consensus        41 ~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~  115 (353)
                      +++|++||||||+++|+||.+|+.+|.++++.++.|+++++    |.| ++||+|+|++++...    ..+....+...+
T Consensus        19 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~~~~~~~~~~   94 (272)
T 1hzd_A           19 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM----SSSEVGPFVSKI   94 (272)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS----CHHHHHHHHHHH
T ss_pred             cCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhcc----ChHHHHHHHHHH
Confidence            68999999999999999999999999999999999999888    877 799999999987532    233334455667


Q ss_pred             HHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHHhcCC
Q 018632          116 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA  194 (353)
Q Consensus       116 ~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~ltG~  194 (353)
                      +.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |++|++||+
T Consensus        95 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~  174 (272)
T 1hzd_A           95 RAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR  174 (272)
T ss_dssp             HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCC
Confidence            7888999999999999999999999999999999999999999999999999999999999999999998 999999999


Q ss_pred             CCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHHHHHH
Q 018632          195 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS  274 (353)
Q Consensus       195 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  274 (353)
                      .++|+||+++||||+|+|++++.+...                                                     
T Consensus       175 ~~~a~eA~~~GLv~~vv~~~~l~~~~~-----------------------------------------------------  201 (272)
T 1hzd_A          175 VLDGKEAKAVGLISHVLEQNQEGDAAY-----------------------------------------------------  201 (272)
T ss_dssp             EEEHHHHHHHTSCSEEECCCTTSCHHH-----------------------------------------------------
T ss_pred             cCCHHHHHHCCCcceecChhhhhHHHH-----------------------------------------------------
Confidence            999999999999999999988753211                                                     


Q ss_pred             HHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 018632          275 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH  352 (353)
Q Consensus       275 l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~~~  352 (353)
                                .++.+++++|+++||.+++.+|++++.....+++++++.|...+..++.   ++|++||+++|++||+
T Consensus       202 ----------~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~egi~af~ekr~  266 (272)
T 1hzd_A          202 ----------RKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIP---TKDRLEGLLAFKEKRP  266 (272)
T ss_dssp             ----------HHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTT---CHHHHHHHHHHTTTSC
T ss_pred             ----------HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHhcCCC
Confidence                      1223568889999999999999999998888999999999999988887   9999999999999986

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=9.6e-52  Score=380.79  Aligned_cols=243  Identities=16%  Similarity=0.205  Sum_probs=212.2

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      ++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.| +|++    |.|++||+|+|++++........  ..
T Consensus         6 ~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~--~~   82 (267)
T 3hp0_A            6 YQTIKVRFQASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGR--KQ   82 (267)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTC--CS
T ss_pred             CceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChH--HH
Confidence            45699999999999999999999999999999999999999986 5777    99999999999999876421111  11


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|.. |+
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A~  161 (267)
T 3hp0_A           83 ASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQKAH  161 (267)
T ss_dssp             CCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHHHH
Confidence            12334556788889999999999999999999999999999999999999999999999999886 66899999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      +|++||+.++|+||+++||||+|+|+.+.  ...                                              
T Consensus       162 ellltg~~i~A~eA~~~GLV~~vv~~~~~--~~~----------------------------------------------  193 (267)
T 3hp0_A          162 YMTLMTKPISVQEASEWGLIDAFDAESDV--LLR----------------------------------------------  193 (267)
T ss_dssp             HHHHHCCCBCHHHHHHHTSSSCBCSCTTH--HHH----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCcceecCCHHH--HHH----------------------------------------------
Confidence            99999999999999999999999986442  122                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ  347 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~af  347 (353)
                                           +++++|++.||.+++.+|++++... ..+.++++.|...+..++.   ++|++||++||
T Consensus       194 ---------------------~~a~~la~~~p~a~~~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~---s~d~~Eg~~AF  248 (267)
T 3hp0_A          194 ---------------------KHLLRLRRLNKKGIAHYKQFMSSLD-HQVSRAKATALTANQDMFS---DPQNQMGIIRY  248 (267)
T ss_dssp             ---------------------HHHHHHTTSCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTT---STTHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence                                 3488999999999999999999764 4578888889888888887   99999999999


Q ss_pred             eccCC
Q 018632          348 ILNKH  352 (353)
Q Consensus       348 l~~~~  352 (353)
                      ++||+
T Consensus       249 ~ekr~  253 (267)
T 3hp0_A          249 VETGQ  253 (267)
T ss_dssp             TTSCC
T ss_pred             HhcCC
Confidence            99986

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.2e-52  Score=385.64  Aligned_cols=248  Identities=20%  Similarity=0.266  Sum_probs=205.9

Q ss_pred             hhccccCCCCCcCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchh
Q 018632           19 LSQHRTSSSVTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIV   94 (353)
Q Consensus        19 ~~~~~~~~~~~~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~   94 (353)
                      +..+.+|+++.+.++..|.++++++|++||||||+++|+||.+|+.+|.++++.++.| +|++    |.|++||+|+|++
T Consensus         6 ~~~~~~~~~~~~~~~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~   84 (264)
T 3he2_A            6 HHHMGTLEAQTQGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLS   84 (264)
T ss_dssp             ----------------CEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCT
T ss_pred             cCCCcccccccCCCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCc
Confidence            3445677788888999999999999999999999999999999999999999999988 8887    8899999999997


Q ss_pred             hHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccH
Q 018632           95 SLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA  174 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~  174 (353)
                      ...      ..   ..+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+
T Consensus        85 ~~~------~~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~  155 (264)
T 3he2_A           85 GDA------FA---ADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWS  155 (264)
T ss_dssp             TCT------TG---GGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHH
T ss_pred             cch------hh---HHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchH
Confidence            311      11   223455667888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHH
Q 018632          175 SFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVI  253 (353)
Q Consensus       175 ~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (353)
                      +++|++++|.. |++|++||+.++|+||+++||||+|++   ++ .+.                                
T Consensus       156 ~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v~~---~~-~a~--------------------------------  199 (264)
T 3he2_A          156 IRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT---LA-DAQ--------------------------------  199 (264)
T ss_dssp             HHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECC---HH-HHH--------------------------------
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCccHHHHHHCCCeEEEec---HH-HHH--------------------------------
Confidence            99999999999 999999999999999999999999986   22 121                                


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhh
Q 018632          254 HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS  333 (353)
Q Consensus       254 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~  333 (353)
                                                         +++++|++.||.+++.+|++++..  .+++++++.|...+..++.
T Consensus       200 -----------------------------------~~A~~la~~~p~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~  242 (264)
T 3he2_A          200 -----------------------------------AWAAEIARLAPLAIQHAKRVLNDD--GAIEEAWPAHKELFDKAWG  242 (264)
T ss_dssp             -----------------------------------HHHHHHHTSCHHHHHHHHHHHHTS--SCSCCCCHHHHHHHHHHHT
T ss_pred             -----------------------------------HHHHHHHcCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhC
Confidence                                               448999999999999999999976  3466778888888888887


Q ss_pred             cCCCCChhhhhhheeccCC
Q 018632          334 RLISGDFYEVSNFQILNKH  352 (353)
Q Consensus       334 ~~~~~d~~egi~afl~~~~  352 (353)
                         ++|++||++||++||+
T Consensus       243 ---s~d~~Eg~~AF~ekR~  258 (264)
T 3he2_A          243 ---SQDVIEAQVARMEKRP  258 (264)
T ss_dssp             ---SHHHHHHHHHHHTTSC
T ss_pred             ---CHHHHHHHHHHhcCCC
Confidence               9999999999999986

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=4.2e-52  Score=384.90  Aligned_cols=246  Identities=17%  Similarity=0.191  Sum_probs=209.1

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----C-----CC-CCcccCcchhhHHHhhhc
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----G-----SG-RAFCAGGDIVSLYHFMNQ  102 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g-----~g-~~F~aG~Dl~~~~~~~~~  102 (353)
                      ++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |     .| ++||+|+|++++...   
T Consensus         9 ~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~---   85 (275)
T 4eml_A            9 YDDILYYKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEG---   85 (275)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------
T ss_pred             CceEEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcc---
Confidence            5679999999999999999999999999999999999999999999988    8     78 599999999987641   


Q ss_pred             CChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcC
Q 018632          103 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP  182 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~  182 (353)
                      ...+...........++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~v  165 (275)
T 4eml_A           86 GYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIV  165 (275)
T ss_dssp             ---------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHh
Confidence            10110011111245678889999999999999999999999999999999999999999999999999888899999999


Q ss_pred             hHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 018632          183 GHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK  261 (353)
Q Consensus       183 g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (353)
                      |.. |++|++||+.++|+||+++||||+|+|++++.+.+.                                        
T Consensus       166 G~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------  205 (275)
T 4eml_A          166 GQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGI----------------------------------------  205 (275)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH----------------------------------------
T ss_pred             HHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHH----------------------------------------
Confidence            999 999999999999999999999999999988875444                                        


Q ss_pred             hcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 018632          262 CFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  341 (353)
Q Consensus       262 ~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~  341 (353)
                                                 +++++|+++||.+++.+|++++.... ......+.|.+.+..++.   ++|++
T Consensus       206 ---------------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~---s~d~~  254 (275)
T 4eml_A          206 ---------------------------QWAKEILSKSPLAIRCLKAAFNADCD-GQAGLQELAGNATLLYYM---TEEGS  254 (275)
T ss_dssp             ---------------------------HHHHHHHTSCHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHT---SHHHH
T ss_pred             ---------------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHhc---CHHHH
Confidence                                       34899999999999999999997654 234444566666767776   99999


Q ss_pred             hhhhheeccCC
Q 018632          342 EVSNFQILNKH  352 (353)
Q Consensus       342 egi~afl~~~~  352 (353)
                      ||++||++||+
T Consensus       255 eg~~AF~ekR~  265 (275)
T 4eml_A          255 EGKQAFLEKRP  265 (275)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHHHHcCCC
Confidence            99999999986

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=1e-51  Score=384.64  Aligned_cols=250  Identities=17%  Similarity=0.212  Sum_probs=210.1

Q ss_pred             cCCCCceEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcC
Q 018632           30 DDLCNQVLVEGK-ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQG  103 (353)
Q Consensus        30 ~~~~~~v~~~~~-~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~  103 (353)
                      +..++.|.++++ ++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.| ++||+|+|++++....  .
T Consensus        23 ~~~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~--~  100 (289)
T 3t89_A           23 SEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYG--G  100 (289)
T ss_dssp             CTTCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC---------
T ss_pred             CCCCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccc--c
Confidence            345667999999 9999999999999999999999999999999999999988    888 5999999999875421  1


Q ss_pred             ChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcCh
Q 018632          104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  183 (353)
Q Consensus       104 ~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g  183 (353)
                      ..+....+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG  180 (289)
T 3t89_A          101 YKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVG  180 (289)
T ss_dssp             ---------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHC
T ss_pred             chhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcC
Confidence            11111112223556888899999999999999999999999999999999999999999999998888888999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHh
Q 018632          184 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  262 (353)
Q Consensus       184 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
                      .. |++|++||+.++|+||+++||||+|+|++++.+.+.                                         
T Consensus       181 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~-----------------------------------------  219 (289)
T 3t89_A          181 QKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETV-----------------------------------------  219 (289)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHH-----------------------------------------
Confidence            99 999999999999999999999999999988875444                                         


Q ss_pred             cCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018632          263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  342 (353)
Q Consensus       263 ~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  342 (353)
                                                +++++|+.+||.+++.+|++++.... ...+..+.|...+..++.   ++|++|
T Consensus       220 --------------------------~~A~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~---s~d~~E  269 (289)
T 3t89_A          220 --------------------------RWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYM---TEEGQE  269 (289)
T ss_dssp             --------------------------HHHHHHHTSCHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTT---SSTTTH
T ss_pred             --------------------------HHHHHHHcCCHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHhc---CHHHHH
Confidence                                      34899999999999999999997754 234444566666666676   999999


Q ss_pred             hhhheeccCC
Q 018632          343 VSNFQILNKH  352 (353)
Q Consensus       343 gi~afl~~~~  352 (353)
                      |++||++||+
T Consensus       270 g~~AF~ekR~  279 (289)
T 3t89_A          270 GRNAFNQKRQ  279 (289)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHhcCCC
Confidence            9999999986

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=6e-52  Score=392.46  Aligned_cols=250  Identities=15%  Similarity=0.172  Sum_probs=185.8

Q ss_pred             CCCceEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCC-------CcccCcchhhHHH
Q 018632           32 LCNQVLVEGK--ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGR-------AFCAGGDIVSLYH   98 (353)
Q Consensus        32 ~~~~v~~~~~--~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~-------~F~aG~Dl~~~~~   98 (353)
                      .++.|.+++.  ++|++||||||+++|+||.+|+.+|.++|+.++.|++|++    |.|+       +||+|+|++++..
T Consensus        53 ~~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~  132 (334)
T 3t8b_A           53 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR  132 (334)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC-
T ss_pred             CCceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhc
Confidence            3567999986  9999999999999999999999999999999999999988    7774       8999999987643


Q ss_pred             hhh---cCC----hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEe-CceEEeccCCCccccc
Q 018632           99 FMN---QGK----LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHP  170 (353)
Q Consensus        99 ~~~---~~~----~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~G~~p  170 (353)
                      ...   ...    .+....+...+..++..|..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p  212 (334)
T 3t8b_A          133 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  212 (334)
T ss_dssp             ---------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence            100   000    01111112234567888999999999999999999999999999999999 9999999999999999


Q ss_pred             CccHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCCh
Q 018632          171 DAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDK  249 (353)
Q Consensus       171 ~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (353)
                      ++|++++|++++|.. |++|++||+.++|+||+++||||+|||++++.+.+.                            
T Consensus       213 ~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~----------------------------  264 (334)
T 3t8b_A          213 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGL----------------------------  264 (334)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHH----------------------------
T ss_pred             cccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHH----------------------------
Confidence            999999999999999 999999999999999999999999999988875544                            


Q ss_pred             hhHHHHHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 018632          250 NSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL  329 (353)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~  329 (353)
                                                             +++++|+++||.|++.+|++++.... .+.+....|.+.+.
T Consensus       265 ---------------------------------------~~A~~ia~~~p~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~  304 (334)
T 3t8b_A          265 ---------------------------------------QWAAEINAKSPQAQRMLKFAFNLLDD-GLVGQQLFAGEATR  304 (334)
T ss_dssp             ---------------------------------------HHHHHHHTSCHHHHHHHHHHHHHTCC-CC------------
T ss_pred             ---------------------------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-chHHHHHHHHHHHH
Confidence                                                   34899999999999999999998754 45555666777776


Q ss_pred             HhhhcCCCCChhhhhhheeccCC
Q 018632          330 QGVSRLISGDFYEVSNFQILNKH  352 (353)
Q Consensus       330 ~~~~~~~~~d~~egi~afl~~~~  352 (353)
                      .++.   ++|++||++||++||+
T Consensus       305 ~~~~---s~d~~Eg~~AFleKR~  324 (334)
T 3t8b_A          305 LAYM---TDEAVEGRDAFLQKRP  324 (334)
T ss_dssp             -----------------------
T ss_pred             HHhc---CHHHHHHHHHHHcCCC
Confidence            6666   9999999999999986

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=2.4e-52  Score=384.16  Aligned_cols=244  Identities=19%  Similarity=0.186  Sum_probs=217.5

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----C-CC-CCcccCcchhhHHHhhhcCChH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----G-SG-RAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g-~g-~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      ++.|.++++++|++||||||++.|+||.+|+.+|.++++.++.|+ +++    | .| ++||+|+|++++..... ... 
T Consensus         3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~-~~~-   79 (261)
T 1ef8_A            3 YQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGR-DPL-   79 (261)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC------CTT-
T ss_pred             cceEEEEEeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCc-hhH-
Confidence            456899999999999999999999999999999999999999999 888    8 88 99999999998754211 111 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                         .+...+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        80 ---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  156 (261)
T 1ef8_A           80 ---SYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI  156 (261)
T ss_dssp             ---CTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred             ---HHHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHH
Confidence               1122346778889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      ++++++||+.++|+||+++||||+|+|++++.+.+.                                            
T Consensus       157 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  192 (261)
T 1ef8_A          157 VKELIFTASPITAQRALAVGILNHVVEVEELEDFTL--------------------------------------------  192 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999877764433                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHH--HhhhcCCCCChhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL--QGVSRLISGDFYEV  343 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~--~~~~~~~~~d~~eg  343 (353)
                                             +++++|++.||.+++.+|++++.....+++++++.|...+.  .++.   ++|++||
T Consensus       193 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---s~d~~eg  246 (261)
T 1ef8_A          193 -----------------------QMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYD---SEDYQEG  246 (261)
T ss_dssp             -----------------------HHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhc---CHHHHHH
Confidence                                   34899999999999999999999888889999999999998  8887   9999999


Q ss_pred             hhheeccCC
Q 018632          344 SNFQILNKH  352 (353)
Q Consensus       344 i~afl~~~~  352 (353)
                      +++|++||+
T Consensus       247 ~~af~ekr~  255 (261)
T 1ef8_A          247 MNAFLEKRK  255 (261)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHHccCC
Confidence            999999985

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=1.1e-51  Score=379.56  Aligned_cols=243  Identities=15%  Similarity=0.142  Sum_probs=214.7

Q ss_pred             ceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CC-CCCcccCcchhhHHHhhhcCChHHHH
Q 018632           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GS-GRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        35 ~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      .+.++.+++|++||||||+ .|+||.+|+.+|.++++.++.|+++++    |. |++||+|+|++++..    .+.+...
T Consensus         6 ~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~----~~~~~~~   80 (260)
T 1sg4_A            6 LVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG----RSPAHYA   80 (260)
T ss_dssp             EEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSS----CCHHHHH
T ss_pred             EEEEEecCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhc----cCHHHHH
Confidence            3666777999999999996 699999999999999999999999888    87 799999999998753    1233344


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEe--CceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC--GKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~--~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      .+...++.++.++..+||||||+|||+|+|||++|+++||+|||+  ++++|++||+++|++|++|++++|++++|.. +
T Consensus        81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  160 (260)
T 1sg4_A           81 GYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA  160 (260)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHH
Confidence            556667788899999999999999999999999999999999999  8999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      ++|++||+.++|+||+++||||+|+|++++.+.+.                                             
T Consensus       161 ~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------  195 (260)
T 1sg4_A          161 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTAL---------------------------------------------  195 (260)
T ss_dssp             HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHH---------------------------------------------
T ss_pred             HHHHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999888765443                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.||.+++.+|++++.....+++++++.|...+..++.   ++|++||+++
T Consensus       196 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~a  250 (260)
T 1sg4_A          196 ----------------------SAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFIS---KDSIQKSLQM  250 (260)
T ss_dssp             ----------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT---SHHHHHHHTC
T ss_pred             ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  348999999999999999999988777889999999999999887   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |+++|+
T Consensus       251 f~ekr~  256 (260)
T 1sg4_A          251 YLERLK  256 (260)
T ss_dssp             ------
T ss_pred             HHHhhc
Confidence            999975

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=1.3e-51  Score=381.60  Aligned_cols=246  Identities=19%  Similarity=0.208  Sum_probs=212.2

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCC-CcccCcchhhHHHhhhcCChH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGR-AFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~-~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      .++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|+ +||+|+|++++.... .....
T Consensus        11 ~~~~i~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~-~~~~~   89 (273)
T 2uzf_A           11 EYDEIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGG-YVGED   89 (273)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC---------CCS
T ss_pred             CCceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccc-cchhh
Confidence            34569999999999999999999999999999999999999999999888    8888 999999999875410 00000


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                      ...  ...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. 
T Consensus        90 ~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  167 (273)
T 2uzf_A           90 QIP--RLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKK  167 (273)
T ss_dssp             SSC--CCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHH
T ss_pred             hHH--HhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHH
Confidence            000  00134567788899999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      |++|++||+.++|+||+++||||+|+|++++.+.+.                                            
T Consensus       168 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------  203 (273)
T 2uzf_A          168 AREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETV--------------------------------------------  203 (273)
T ss_dssp             HHHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHH--------------------------------------------
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHH--------------------------------------------
Confidence            999999999999999999999999999888875443                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHH-HHHHHhhhcCCCCChhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREY-RMSLQGVSRLISGDFYEVS  344 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~-~~~~~~~~~~~~~d~~egi  344 (353)
                                             +++++|++.||.+++.+|++++  ...++.++++.|. ..+..++.   ++|++||+
T Consensus       204 -----------------------~~a~~la~~~~~a~~~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~---s~d~~egi  255 (273)
T 2uzf_A          204 -----------------------QWCKEIMKHSPTALRFLKAAMN--ADTDGLAGLQQMAGDATLLYYT---TDEAKEGR  255 (273)
T ss_dssp             -----------------------HHHHHHTTSCHHHHHHHHHHHH--HHHSHHHHHHHHHHHHHHHHHT---SHHHHHHH
T ss_pred             -----------------------HHHHHHHhCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHhc---ChHHHHHH
Confidence                                   3488999999999999999998  3457889999998 88888887   99999999


Q ss_pred             hheeccCC
Q 018632          345 NFQILNKH  352 (353)
Q Consensus       345 ~afl~~~~  352 (353)
                      ++|++||+
T Consensus       256 ~af~ekr~  263 (273)
T 2uzf_A          256 DAFKEKRD  263 (273)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHhcCC
Confidence            99999985

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=2.5e-50  Score=372.93  Aligned_cols=234  Identities=21%  Similarity=0.255  Sum_probs=213.2

Q ss_pred             CCcCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcC
Q 018632           28 VTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQG  103 (353)
Q Consensus        28 ~~~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~  103 (353)
                      ....|++.|.++++++|++||||||++ |+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++...    
T Consensus        18 ~~~~m~~~v~~~~~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~----   92 (277)
T 4di1_A           18 GPGSMNEFVSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTL----   92 (277)
T ss_dssp             -----CCSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTC----
T ss_pred             CCCCCCceEEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCccccccc----
Confidence            345566789999999999999999999 99999999999999999999999998    889999999999998753    


Q ss_pred             ChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcCh
Q 018632          104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG  183 (353)
Q Consensus       104 ~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g  183 (353)
                      +......+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG  172 (277)
T 4di1_A           93 NAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVG  172 (277)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhC
Confidence            34445566777788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHh
Q 018632          184 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  262 (353)
Q Consensus       184 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
                      .. |++|++||+.++|+||+++||||+|+|++++.+.+.                                         
T Consensus       173 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~-----------------------------------------  211 (277)
T 4di1_A          173 SSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAV-----------------------------------------  211 (277)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHH-----------------------------------------
Confidence            99 999999999999999999999999999988875444                                         


Q ss_pred             cCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhh
Q 018632          263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS  333 (353)
Q Consensus       263 ~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~  333 (353)
                                                +++++|++.||.+++.+|++++.....+++++++.|...+..++.
T Consensus       212 --------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~  256 (277)
T 4di1_A          212 --------------------------AWARRYLECPPRALAAAKAVINDVFELEATERAAAERRRYVELFA  256 (277)
T ss_dssp             --------------------------HHHHTTTTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTS
T ss_pred             --------------------------HHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence                                      348999999999999999999999999999999999999998886

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=3.1e-51  Score=381.37  Aligned_cols=243  Identities=16%  Similarity=0.118  Sum_probs=217.4

Q ss_pred             CCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCC-CcccCcchhhHHHhhhcCCh
Q 018632           31 DLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGR-AFCAGGDIVSLYHFMNQGKL  105 (353)
Q Consensus        31 ~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~-~F~aG~Dl~~~~~~~~~~~~  105 (353)
                      ..++.|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|++|++    |.|+ +||+|+|++++.....    
T Consensus         5 ~~~~~v~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~----   79 (289)
T 3h0u_A            5 ASYETIKARLDGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTA----   79 (289)
T ss_dssp             CCCSSEEEEEETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHH----
T ss_pred             CCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCc----
Confidence            34567999999999999999998 799999999999999999999999988    8875 5667779998875311    


Q ss_pred             HHHH---HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCc-eEEeccCCCcccccCccHHHHHhhc
Q 018632          106 EECK---DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHL  181 (353)
Q Consensus       106 ~~~~---~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~r~  181 (353)
                      ....   .+...+..++.++..+||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~  159 (289)
T 3h0u_A           80 EAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRL  159 (289)
T ss_dssp             HHHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHH
Confidence            1111   23345667888999999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             ChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHH
Q 018632          182 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD  260 (353)
Q Consensus       182 ~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (353)
                      +|.. |++|++||++++|+||+++||||+|+|++++.+.+.                                       
T Consensus       160 vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~---------------------------------------  200 (289)
T 3h0u_A          160 LGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVA---------------------------------------  200 (289)
T ss_dssp             HCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHH---------------------------------------
T ss_pred             hCHHHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHH---------------------------------------
Confidence            9999 999999999999999999999999999888765443                                       


Q ss_pred             HhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCCh
Q 018632          261 KCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDF  340 (353)
Q Consensus       261 ~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~  340 (353)
                                                  +++++|++.||.|++.+|++++.... +++++++.|...+..++.   ++|+
T Consensus       201 ----------------------------~lA~~la~~~p~a~~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~---s~d~  248 (289)
T 3h0u_A          201 ----------------------------GIAARMSGFPRDALIAAKSAINAISL-PAPAEVRADAALFQQLVR---GEKV  248 (289)
T ss_dssp             ----------------------------HHHHHHHTSCHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTT---SHHH
T ss_pred             ----------------------------HHHHHHHhCCHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHhC---CHHH
Confidence                                        34899999999999999999998887 899999999999999887   9999


Q ss_pred             hhhhhheec
Q 018632          341 YEVSNFQIL  349 (353)
Q Consensus       341 ~egi~afl~  349 (353)
                      +||+++|++
T Consensus       249 ~egi~AFle  257 (289)
T 3h0u_A          249 QQRTAELFK  257 (289)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            999999998

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=8.1e-51  Score=370.04  Aligned_cols=235  Identities=17%  Similarity=0.218  Sum_probs=211.9

Q ss_pred             ceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHH
Q 018632           35 QVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKD  110 (353)
Q Consensus        35 ~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~  110 (353)
                      ...++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++..... ...     
T Consensus         4 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~-----   77 (243)
T 2q35_A            4 VQLTELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTR-GEV-----   77 (243)
T ss_dssp             EEEEEEETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHT-TCC-----
T ss_pred             eEEEEeeCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccc-hhh-----
Confidence            45677899999999999999999999999999999999999999888    88999999999998765321 111     


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHH
Q 018632          111 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  189 (353)
Q Consensus       111 ~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l  189 (353)
                         ..++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++++
T Consensus        78 ---~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  154 (243)
T 2q35_A           78 ---EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEM  154 (243)
T ss_dssp             ---CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHH
T ss_pred             ---HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHH
Confidence               124567788999999999999999999999999999999999999999999999999999999999999998 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHH
Q 018632          190 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  269 (353)
Q Consensus       190 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (353)
                      ++||+.++|+||+++||||+|+|++++.+.+.                                                
T Consensus       155 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------------  186 (243)
T 2q35_A          155 IYTGENYRGKELAERGIPFPVVSRQDVLNYAQ------------------------------------------------  186 (243)
T ss_dssp             HHHCCCEEHHHHHHTTCSSCEECHHHHHHHHH------------------------------------------------
T ss_pred             HHcCCCCCHHHHHHcCCCCEecChhHHHHHHH------------------------------------------------
Confidence            99999999999999999999999877764433                                                


Q ss_pred             HHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       270 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                                         +++++|++.+|.+++.+|++++.....+++++++.|...+...+.   ++|++||+++|.
T Consensus       187 -------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~a~~  243 (243)
T 2q35_A          187 -------------------QLGQKIAKSPRLSLVALKQHLSADIKAKFPEAIKKELEIHQVTFN---QPEIASRIQQEF  243 (243)
T ss_dssp             -------------------HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---STTHHHHHHTTC
T ss_pred             -------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhC---CHHHHHHHhhcC
Confidence                               348999999999999999999988877899999999999988887   999999999874

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=4.9e-50  Score=367.20  Aligned_cols=232  Identities=14%  Similarity=0.161  Sum_probs=204.4

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDF  111 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  111 (353)
                      |.++++++|++||||||++.|+||.+|+.+|.++++.++. +++++    |.|++||+|+|++++...    ........
T Consensus         9 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~~~~~   83 (254)
T 3isa_A            9 LAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQ----SEGDLLLR   83 (254)
T ss_dssp             EEEEECSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTS----CHHHHHHH
T ss_pred             EEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhcc----CchhHHHH
Confidence            8999999999999999999999999999999999999987 47777    889999999999987542    22233334


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHH
Q 018632          112 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  190 (353)
Q Consensus       112 ~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~  190 (353)
                      +..+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|   ++++|++++|.. |++|+
T Consensus        84 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~  160 (254)
T 3isa_A           84 MVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSIL  160 (254)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHHH
Confidence            45567888999999999999999999999999999999999999999999999999998   378999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHH
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  270 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (353)
                      +||+.++|+||+++||||+|+|++++++.+.                                                 
T Consensus       161 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------------  191 (254)
T 3isa_A          161 GSARAFDADEARRIGFVRDCAAQAQWPALID-------------------------------------------------  191 (254)
T ss_dssp             TTTCEEEHHHHHHTTSSSEECCGGGHHHHHH-------------------------------------------------
T ss_pred             HhCCCCcHHHHHHCCCccEEeChhHHHHHHH-------------------------------------------------
Confidence            9999999999999999999999988876544                                                 


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018632          271 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  350 (353)
Q Consensus       271 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~  350 (353)
                                        +++++|++.+|.+++.+|++++.       +.++.|...+...+.   ++|++||+++|++|
T Consensus       192 ------------------~~a~~la~~~~~a~~~~K~~l~~-------~~~~~e~~~~~~~~~---s~d~~egi~af~ek  243 (254)
T 3isa_A          192 ------------------AAAEAATALDPATRATLHRVLRD-------DHDDADLAALARSAA---QPGFKARIRDYLAQ  243 (254)
T ss_dssp             ------------------HHHHHHTTSCHHHHHHHHHHHSC-------CCHHHHHHHHHHHHH---STTHHHHHHHHHHC
T ss_pred             ------------------HHHHHHHcCCHHHHHHHHHHHhh-------hhHHHHHHHHHHHhC---CHHHHHHHHHHHhc
Confidence                              34899999999999999999842       234567777888887   99999999999999


Q ss_pred             CC
Q 018632          351 KH  352 (353)
Q Consensus       351 ~~  352 (353)
                      |+
T Consensus       244 r~  245 (254)
T 3isa_A          244 PA  245 (254)
T ss_dssp             --
T ss_pred             CC
Confidence            86

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=2e-49  Score=364.40  Aligned_cols=244  Identities=15%  Similarity=0.116  Sum_probs=211.7

Q ss_pred             ccCCCCCcCCCCceEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHH
Q 018632           23 RTSSSVTDDLCNQVLVEGKA-NSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLY   97 (353)
Q Consensus        23 ~~~~~~~~~~~~~v~~~~~~-~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~   97 (353)
                      +.+.......++.|.+++++ +|++|+||||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++.
T Consensus        12 ~~~~~~~~~~~~~i~~~~~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~   91 (263)
T 2j5g_A           12 TLNQPEYFTKYENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLG   91 (263)
T ss_dssp             ---CCGGGGSCTTEEEEECTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGC
T ss_pred             CCCcccccCCCCeEEEEEcCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHh
Confidence            34456666667789999999 999999999999999999999999999999999999988    8899999999999875


Q ss_pred             HhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEec-cCCCcccccCccHHH
Q 018632           98 HFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT-PETLIGFHPDAGASF  176 (353)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~-pe~~~G~~p~~g~~~  176 (353)
                      ..   .+.+....+...+..++..+..+||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|+++
T Consensus        92 ~~---~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~  167 (263)
T 2j5g_A           92 DV---TNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHI  167 (263)
T ss_dssp             CT---TSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHH
T ss_pred             cc---CCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHH
Confidence            32   122333344555677888999999999999999999 5999999999999999999999 999999999999999


Q ss_pred             HHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHH
Q 018632          177 YLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR  255 (353)
Q Consensus       177 ~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (353)
                      +|++++|.. +++|++||+.++|+||+++||||+|+|++++.+.+.                                  
T Consensus       168 ~L~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------  213 (263)
T 2j5g_A          168 LWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAW----------------------------------  213 (263)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHH----------------------------------
T ss_pred             HHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHH----------------------------------
Confidence            999999998 999999999999999999999999999888765443                                  


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcC
Q 018632          256 IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRL  335 (353)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~  335 (353)
                                                       +++++|++.||.+++.+|++++.....+++++++.|.          
T Consensus       214 ---------------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~----------  250 (263)
T 2j5g_A          214 ---------------------------------EIARTLAKQPTLNLRYTRVALTQRLKRLVNEGIGYGL----------  250 (263)
T ss_dssp             ---------------------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred             ---------------------------------HHHHHHHhCCHHHHHHHHHHHHhhhhccHHHHHHHHH----------
Confidence                                             3489999999999999999999877666766665543          


Q ss_pred             CCCChhhhhhheeccC
Q 018632          336 ISGDFYEVSNFQILNK  351 (353)
Q Consensus       336 ~~~d~~egi~afl~~~  351 (353)
                          ..|||+||+++|
T Consensus       251 ----~~eg~~af~~~~  262 (263)
T 2j5g_A          251 ----ALEGITATDLRN  262 (263)
T ss_dssp             ----HHHHHHHHHTTC
T ss_pred             ----HHhhHHHHHhcc
Confidence                459999999886

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=3.9e-49  Score=366.32  Aligned_cols=250  Identities=16%  Similarity=0.098  Sum_probs=204.2

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCC---hH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK---LE  106 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~---~~  106 (353)
                      +.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++........   .+
T Consensus         9 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~   88 (280)
T 1pjh_A            9 EKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPS   88 (280)
T ss_dssp             TTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSS
T ss_pred             CceEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchhh
Confidence            569999999999999999999999999999999999999999999888    88999999999998753211110   01


Q ss_pred             H----HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEe-CceEEeccCCCcccccCccHHHHHhhc
Q 018632          107 E----CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPDAGASFYLSHL  181 (353)
Q Consensus       107 ~----~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~-~~a~f~~pe~~~G~~p~~g~~~~l~r~  181 (353)
                      .    ...+......++..+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~  168 (280)
T 1pjh_A           89 ETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLK  168 (280)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHH
Confidence            1    11223334677889999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             ChHH-HHHHHhcCCCCCHHHHHHcCccceecCCC-----ChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHH
Q 018632          182 PGHL-GEFLALTGAKLNGAEMMACGLATHYSVSE-----KLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHR  255 (353)
Q Consensus       182 ~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~-----~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (353)
                      +|.. |++|++||+.++|+||+++||||+|+|++     ++.+.+.                                  
T Consensus       169 vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~----------------------------------  214 (280)
T 1pjh_A          169 FGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVL----------------------------------  214 (280)
T ss_dssp             HCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHH----------------------------------
T ss_pred             hCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHH----------------------------------
Confidence            9999 99999999999999999999999999986     3432211                                  


Q ss_pred             HHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcC
Q 018632          256 IDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRL  335 (353)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~  335 (353)
                                                      .+++++|++.||.+++.+|++++......++.....|.......+.  
T Consensus       215 --------------------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~d~~e~~~af~--  260 (280)
T 1pjh_A          215 --------------------------------EELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWV--  260 (280)
T ss_dssp             --------------------------------HHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH--
T ss_pred             --------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHh--
Confidence                                            1348999999999999999999987665666666666666555554  


Q ss_pred             CCCChhhhhhheeccCC
Q 018632          336 ISGDFYEVSNFQILNKH  352 (353)
Q Consensus       336 ~~~d~~egi~afl~~~~  352 (353)
                       +++..|+..+|+++|+
T Consensus       261 -~kr~~e~~~~f~~~~~  276 (280)
T 1pjh_A          261 -DGEPLKRFRQLGSKQR  276 (280)
T ss_dssp             -HTHHHHHHTC------
T ss_pred             -CCccHHHHHHHHhccc
Confidence             6677778888887764

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=5.3e-49  Score=355.71  Aligned_cols=224  Identities=15%  Similarity=0.144  Sum_probs=203.2

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      |++.|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+.+.+  |.|++||+|+|++++..     ..+...
T Consensus         4 M~~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~~vvltg~g~~F~aG~Dl~~~~~-----~~~~~~   77 (232)
T 3ot6_A            4 MSDLVSYHLDDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDRAIVIVTGQPGILSGGYDLKVMTS-----SAEAAI   77 (232)
T ss_dssp             HHHHEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHTTCEEEEECBTEEEECCBCHHHHHH-----CHHHHH
T ss_pred             cccceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCCcCHHHHhh-----ChHHHH
Confidence            3456999999999999999995 699999999999999999998876555  99999999999999875     234445


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCc-eEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      .+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|+++++++++|.. ++
T Consensus        78 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~  157 (232)
T 3ot6_A           78 NLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFN  157 (232)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHH
Confidence            66777888999999999999999999999999999999999999998 89999999999998888888999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      ++++||++++|+||+++||||+|+|++++.+.+.                                              
T Consensus       158 ~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  191 (232)
T 3ot6_A          158 RSVINAEMFDPEGAMAAGFLDKVVSVEELQGAAL----------------------------------------------  191 (232)
T ss_dssp             HHHTSCCEECHHHHHHHTSCSEEECTTTHHHHHH----------------------------------------------
T ss_pred             HHHHcCCccCHHHHHHCCCCCEecCHHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999999876544                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS  328 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~  328 (353)
                                           +++++|++.||.+++.+|++++.....+++++++.|.+.+
T Consensus       192 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          192 ---------------------AVAAQLKKINMNAHKKTKLKVRKGLLDTLDAAIEQDRQHM  231 (232)
T ss_dssp             ---------------------HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---------------------HHHHHHHcCCHHHHHHHHHHHHHHhHhHHHHHHHHHHHhc
Confidence                                 3489999999999999999999998889999999998764

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=5.8e-49  Score=355.65  Aligned_cols=224  Identities=20%  Similarity=0.164  Sum_probs=201.4

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      |++.|.++++++|++||||||+ .|+||.+|+.+|.++++.++.| ++++    |.|++||+|+|++++...    +.+.
T Consensus         3 M~~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~----~~~~   76 (233)
T 3r6h_A            3 MSGPVTYTHDDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSG----EAKP   76 (233)
T ss_dssp             --CCEEEEEETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC-------CHH
T ss_pred             CCCceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhcc----ChHH
Confidence            4567999999999999999985 6999999999999999999987 4666    999999999999998652    2344


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ...+....++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a  156 (233)
T 3r6h_A           77 AIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAY  156 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHH
Confidence            556777788899999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      +++++||++++|+||+++||||+|+|++++.+.+.                                             
T Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  191 (233)
T 3r6h_A          157 QQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAE---------------------------------------------  191 (233)
T ss_dssp             HHHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHH---------------------------------------------
T ss_pred             HHHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHH---------------------------------------------
Confidence            99999999999999999999999999988875444                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS  328 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~  328 (353)
                                            +++++|++.||.+++.+|++++.....+++++++.|...|
T Consensus       192 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~f  231 (233)
T 3r6h_A          192 ----------------------EAAREFAGLNQQAHNATKLRARAEALKAIRAGIDGIEAEF  231 (233)
T ss_dssp             ----------------------HHHHHHHTSCHHHHHHHHHHTTHHHHHHHHHHHHTSHHHH
T ss_pred             ----------------------HHHHHHHcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence                                  3489999999999999999999998889999999887765

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=1e-47  Score=360.37  Aligned_cols=247  Identities=13%  Similarity=0.142  Sum_probs=214.0

Q ss_pred             CCceE--EEEeCCEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHHhc-----CCCccc----CCCCCcccCcchhhHH
Q 018632           33 CNQVL--VEGKANSRMAILNRPSA----LNALNTNMGAKLNKLFKAWEN-----DPNIGF----GSGRAFCAGGDIVSLY   97 (353)
Q Consensus        33 ~~~v~--~~~~~~v~~I~lnrp~~----~Nal~~~~~~~L~~~l~~~~~-----d~~v~v----g~g~~F~aG~Dl~~~~   97 (353)
                      ++.+.  ++++++|++||||||+|    .|+||.+|+.+|.++|+.++.     |++|++    |.|++||+|+|++++.
T Consensus        29 y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~  108 (305)
T 3m6n_A           29 GSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFC  108 (305)
T ss_dssp             CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHH
T ss_pred             CceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHH
Confidence            44454  46789999999999998    459999999999999999987     578887    8899999999999987


Q ss_pred             HhhhcCChHHHHHHHHHHHHHHHHH---hhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccH
Q 018632           98 HFMNQGKLEECKDFFRTLYSFIYLL---GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA  174 (353)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~  174 (353)
                      ......+.+....+...+...+..+   ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~  188 (305)
T 3m6n_A          109 QLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGA  188 (305)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSH
T ss_pred             hccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccH
Confidence            6533334444445555555555544   4689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHH
Q 018632          175 SFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVI  253 (353)
Q Consensus       175 ~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (353)
                      +++|++++|.. |++|++||+.++|+||+++|||++|+|++++.+.+.                                
T Consensus       189 ~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~--------------------------------  236 (305)
T 3m6n_A          189 YSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVE--------------------------------  236 (305)
T ss_dssp             HHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHH--------------------------------
T ss_pred             HHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHH--------------------------------
Confidence            99999999999 999999999999999999999999999999876544                                


Q ss_pred             HHHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhh
Q 018632          254 HRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS  333 (353)
Q Consensus       254 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~  333 (353)
                                                         +++++|++ +|.+++.+|++++.....+++++++.|...+..++.
T Consensus       237 -----------------------------------~~a~~la~-~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~  280 (305)
T 3m6n_A          237 -----------------------------------QVIRESKR-TPHAWAAMQQVREMTTAVPLEEMMRITEIWVDTAMQ  280 (305)
T ss_dssp             -----------------------------------HHHHHHTT-CHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             -----------------------------------HHHHHHhh-ChHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHc
Confidence                                               34888886 899999999999999999999999999999999998


Q ss_pred             cCCCCChhhhhhheecc
Q 018632          334 RLISGDFYEVSNFQILN  350 (353)
Q Consensus       334 ~~~~~d~~egi~afl~~  350 (353)
                         ++|....+.+.+..
T Consensus       281 ---s~d~~~~~m~~l~~  294 (305)
T 3m6n_A          281 ---LGEKSLRTMDRLVR  294 (305)
T ss_dssp             ---CCHHHHHHHHHHHH
T ss_pred             ---CchHHHHHHHHHHH
Confidence               99998887776643

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=4e-48  Score=367.43  Aligned_cols=248  Identities=18%  Similarity=0.177  Sum_probs=200.5

Q ss_pred             CCcCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcC
Q 018632           28 VTDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQG  103 (353)
Q Consensus        28 ~~~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~  103 (353)
                      +..+.++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++    |.|++||+|+|++++.......
T Consensus        29 ~~~~~~~~i~~e~~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~  108 (333)
T 3njd_A           29 VDFDNLKTMTYEVTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSA  108 (333)
T ss_dssp             CCTTSCSSEEEEEETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC-----------
T ss_pred             CCCCCCCeEEEEEECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhccccc
Confidence            344567789999999999999999999999999999999999999999999998    8999999999999986532111


Q ss_pred             Ch--------------------------HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCce
Q 018632          104 KL--------------------------EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT  157 (353)
Q Consensus       104 ~~--------------------------~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a  157 (353)
                      ..                          .....+...+..++..|.++||||||+|||+|+|||++|+++||+|||++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a  188 (333)
T 3njd_A          109 GGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADA  188 (333)
T ss_dssp             ----CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTC
T ss_pred             ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCC
Confidence            00                          0123455667778889999999999999999999999999999999999999


Q ss_pred             EEeccCCCcccccCccHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHH
Q 018632          158 VFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEA  236 (353)
Q Consensus       158 ~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~  236 (353)
                      +|++||+++|++|++|   +|++++|.. |++|++||+.++|+||+++||||+|+|++++.+.+.               
T Consensus       189 ~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~---------------  250 (333)
T 3njd_A          189 KIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTE---------------  250 (333)
T ss_dssp             EEECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHH---------------
T ss_pred             eeechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHH---------------
Confidence            9999999999999876   478999999 999999999999999999999999999988875544               


Q ss_pred             HHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcC-
Q 018632          237 CLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-  315 (353)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~-  315 (353)
                                                                          +++++|++.||.+++.+|++++..... 
T Consensus       251 ----------------------------------------------------~lA~~ia~~~~~al~~~K~~l~~~~~~~  278 (333)
T 3njd_A          251 ----------------------------------------------------RLVERIAAMPVNQLIMAKLACNTALLNQ  278 (333)
T ss_dssp             ----------------------------------------------------HHHHHHHTSCHHHHHHHHHHHHHHHHTT
T ss_pred             ----------------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence                                                                348999999999999999999987653 


Q ss_pred             CHHHH--HH----------HHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 018632          316 TFDEC--LV----------REYRMSLQGVSRLISGDFYEVSNFQILNKH  352 (353)
Q Consensus       316 ~~~~~--l~----------~e~~~~~~~~~~~~~~d~~egi~afl~~~~  352 (353)
                      ++...  +.          .|...|.+.       ...+|+++|++||+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~e~~~f~~~-------~~~~g~~a~~ekR~  320 (333)
T 3njd_A          279 GVATSQMVSTVFDGIARHTPEGHAFVAT-------AREHGFREAVRRRD  320 (333)
T ss_dssp             THHHHHHHHHHHHHHHTTSHHHHHHHHH-------HHHHCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcChHHHHHHHH-------hhhHHHHHHHHhcC
Confidence            44443  11          122222222       23788888888875

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=2.9e-47  Score=353.34  Aligned_cols=233  Identities=18%  Similarity=0.233  Sum_probs=193.8

Q ss_pred             cCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCCh
Q 018632           30 DDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKL  105 (353)
Q Consensus        30 ~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~  105 (353)
                      ..+++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++.........
T Consensus        16 ~~~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~   95 (279)
T 3t3w_A           16 QRTEMYIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTL   95 (279)
T ss_dssp             ---CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCH
T ss_pred             cccCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccch
Confidence            3446789999999999999999999999999999999999999999999988    889999999999988653221221


Q ss_pred             H-HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          106 E-ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       106 ~-~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      . ........+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| +++..+ ++++|.
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~~-~~~~~~-~~~vG~  173 (279)
T 3t3w_A           96 EFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGG-VEYHGH-TWELGP  173 (279)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSS-CSSCCH-HHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCCC-chHHHH-HhhcCH
Confidence            1 1222334556788899999999999999999999999999999999999999999999999954 444443 999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . |++|++||++++|+||+++||||+|+|++++.+.+.                                          
T Consensus       174 ~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------  211 (279)
T 3t3w_A          174 RKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETR------------------------------------------  211 (279)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999988875544                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQG  331 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~-~~~~~~l~~e~~~~~~~  331 (353)
                                               +++++|++.||.+++.+|++++.... .+++++++.+.......
T Consensus       212 -------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~  255 (279)
T 3t3w_A          212 -------------------------ALAGEIAKMPPFALRQAKRAVNQTLDVQGFYAAIQSVFDIHQTG  255 (279)
T ss_dssp             -------------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             -------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcccHHHHHHHHhhHHHHH
Confidence                                     34899999999999999999998765 47888888877665443

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=1.5e-47  Score=371.57  Aligned_cols=246  Identities=18%  Similarity=0.136  Sum_probs=197.8

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CC--------C-CCcccCcchhhHHH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GS--------G-RAFCAGGDIVSLYH   98 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~--------g-~~F~aG~Dl~~~~~   98 (353)
                      .++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.        | ++||+|+|++++..
T Consensus       165 ~~~~v~~e~~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~  244 (440)
T 2np9_A          165 EMEAVHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQ  244 (440)
T ss_dssp             ECSSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHT
T ss_pred             CCceEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhc
Confidence            34579999999999999999999999999999999999999999999988    73        6 89999999998764


Q ss_pred             hhhcCChHHHHHHHHHHHHHHHHH------------hhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCc
Q 018632           99 FMNQGKLEECKDFFRTLYSFIYLL------------GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI  166 (353)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~~l------------~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~  166 (353)
                      ................+..++..+            ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~l  324 (440)
T 2np9_A          245 GGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKE  324 (440)
T ss_dssp             TCCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTT
T ss_pred             cCcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhcc
Confidence            211111100111112233444443            47999999999999999999999999999999999999999999


Q ss_pred             ccccCccHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhccc
Q 018632          167 GFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLV  245 (353)
Q Consensus       167 G~~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  245 (353)
                      |++|++| +++|++++|.. +++|++||+.++|+||+++||||+|||++++++.+..                       
T Consensus       325 Gl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~-----------------------  380 (440)
T 2np9_A          325 GIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIER-----------------------  380 (440)
T ss_dssp             CCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHH-----------------------
T ss_pred             CcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHH-----------------------
Confidence            9999887 68999999999 9999999999999999999999999998777543322                       


Q ss_pred             CCChhhHHHHHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHH---HHHH
Q 018632          246 YPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFD---ECLV  322 (353)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~---~~l~  322 (353)
                                                                  ++++|   ++.++..+|++++.... .++   +.++
T Consensus       381 --------------------------------------------~A~~l---a~~Av~~~K~~l~~~~~-~~~~~~~~l~  412 (440)
T 2np9_A          381 --------------------------------------------SLTRL---DGDAVLANRRMLNLADE-SPDGFRAYMA  412 (440)
T ss_dssp             --------------------------------------------HHHTT---CSHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred             --------------------------------------------HHHHh---CHHHHHHHHHHHHhhhc-chhHHHHHHH
Confidence                                                        24443   56899999999997754 443   5556


Q ss_pred             HHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 018632          323 REYRMSLQGVSRLISGDFYEVSNFQILNKH  352 (353)
Q Consensus       323 ~e~~~~~~~~~~~~~~d~~egi~afl~~~~  352 (353)
                      .|...+..++.   ++|++||+++|++||+
T Consensus       413 ~e~~~~~~~~~---s~D~~Egv~AFleKR~  439 (440)
T 2np9_A          413 EFALMQALRLY---GHDVIDKVGRFGGRPP  439 (440)
T ss_dssp             HHHHHHHHHHT---CHHHHHHHHTCC----
T ss_pred             HHHHHHHHHhc---CHHHHHHHHHHHhCCC
Confidence            66666767776   9999999999999986

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=3.9e-47  Score=348.30  Aligned_cols=221  Identities=16%  Similarity=0.221  Sum_probs=197.1

Q ss_pred             CceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           34 NQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        34 ~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      +.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++    |.|++||+|+|++++..    .+.+...
T Consensus        16 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~----~~~~~~~   91 (257)
T 1szo_A           16 ENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL----GTPHDWD   91 (257)
T ss_dssp             TTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCC----SSHHHHH
T ss_pred             ceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhc----CCHHHHH
Confidence            469999999999999999999999999999999999999999999988    88999999999998642    1233333


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEec-cCCCcccccCccHHHHHhhcChHH-HH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT-PETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~-pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      .+...+.+++..+..+||||||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|++|++++|++++|.. ++
T Consensus        92 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~  170 (257)
T 1szo_A           92 EIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGR  170 (257)
T ss_dssp             HHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHH
Confidence            44555677888999999999999999999 5999999999999999999999 999999999999999999999999 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCC
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT  267 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
                      ++++||+.++|+||+++||||+|+|++++.+.+.                                              
T Consensus       171 ~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------  204 (257)
T 1szo_A          171 YFLLTGQELDARTALDYGAVNEVLSEQELLPRAW----------------------------------------------  204 (257)
T ss_dssp             HHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHH----------------------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999877764433                                              


Q ss_pred             HHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 018632          268 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYR  326 (353)
Q Consensus       268 ~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~  326 (353)
                                           +++++|++.||.+++.+|++++.....+++++++.|..
T Consensus       205 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~~~~  242 (257)
T 1szo_A          205 ---------------------ELARGIAEKPLLARRYARKVLTRQLRRVMEADLSLGLA  242 (257)
T ss_dssp             ---------------------HHHHHHHTSCHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence                                 44899999999999999999998877788888877654

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=4.2e-46  Score=384.42  Aligned_cols=267  Identities=19%  Similarity=0.253  Sum_probs=216.9

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDF  111 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  111 (353)
                      ..++.+|+|++||||||+ .|+||.+|+.+|.++++.++.|++|++    |.|++||+|+|++++....   ...     
T Consensus        23 ~~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~---~~~-----   93 (742)
T 3zwc_A           23 EYLRLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFT---PGL-----   93 (742)
T ss_dssp             EEEECSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSC---SCS-----
T ss_pred             eEEEeeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccC---hhH-----
Confidence            445678999999999997 699999999999999999999999998    8999999999999886531   111     


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHH
Q 018632          112 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  190 (353)
Q Consensus       112 ~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~  190 (353)
                        .+.+++.++.+++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |++|+
T Consensus        94 --~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~  171 (742)
T 3zwc_A           94 --ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLI  171 (742)
T ss_dssp             --HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHH
T ss_pred             --HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHH
Confidence              234577888999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHH
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  270 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (353)
                      +||+.++|+||+++||||+|+|++.+++..+...+++..++......++...     .                ......
T Consensus       172 ltG~~i~a~eA~~~GLv~~vv~~d~~~~A~~~A~~ia~~~~~~~~~~~~~~~-----~----------------~~~~~~  230 (742)
T 3zwc_A          172 TSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIFNKPVP-----S----------------LPNMDS  230 (742)
T ss_dssp             HHCCCEEHHHHHHHTSCSEEESSCHHHHHHHHHHHHTTSCSGGGCGGGSCCC-----C----------------CTTHHH
T ss_pred             HcCCchhHHHHHHcCCccEecCchhhHHHHHHHHHHhcCCchhhhhhccccc-----c----------------cchhhh
Confidence            9999999999999999999999877665444345666555543322111110     0                000111


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHHh--cCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 018632          271 IIDSLESEASLINDPWCGSTLRLLKE--ASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI  348 (353)
Q Consensus       271 i~~~l~~~~~~~~~~~a~~~a~~i~~--~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl  348 (353)
                      ..               .....++.+  ..+.|...+++.++.+...+++++++.|.+.|..++.   +++.++++++|+
T Consensus       231 ~~---------------~~~~~~~~k~~~~~~A~~~~~~~v~~~~~~~~~~gl~~E~~~F~~l~~---s~~~k~~~~aFf  292 (742)
T 3zwc_A          231 VF---------------AEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRA---SGQAKALQYAFF  292 (742)
T ss_dssp             HH---------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHT---SHHHHHHHHHHH
T ss_pred             hH---------------HHHHHHHhhhccchhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence            11               011122222  2456888899999999999999999999999999998   999999999999


Q ss_pred             ccCC
Q 018632          349 LNKH  352 (353)
Q Consensus       349 ~~~~  352 (353)
                      ++|+
T Consensus       293 ~~r~  296 (742)
T 3zwc_A          293 AEKS  296 (742)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8753

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=5.6e-44  Score=369.73  Aligned_cols=283  Identities=14%  Similarity=0.124  Sum_probs=223.6

Q ss_pred             CceEEE-EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCC-CcccCcchhhHHHhhhcCChH
Q 018632           34 NQVLVE-GKANSRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGF----GSGR-AFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        34 ~~v~~~-~~~~v~~I~lnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~-~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      ..+.++ .+++|++||||||+ +.|+||.+|+.+|.++++.++.|+++++    | |+ +||+|+|++++.... ..+.+
T Consensus         6 ~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~-~~~~~   83 (715)
T 1wdk_A            6 KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENF-KLPDA   83 (715)
T ss_dssp             SSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHT-TSCHH
T ss_pred             CeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcc-cCCHH
Confidence            357788 78899999999998 8999999999999999999999999888    8 76 999999999986531 11222


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                      ....+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. 
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~  163 (715)
T 1wdk_A           84 ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDN  163 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHH
Confidence            3344556677889999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HhhhcC--CHHHHHHHHHHhhcccCCChhhHHHHHHHHHHh
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTD--DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  262 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
                      |++|++||+.++|+||+++||||+|+|++++.+.+..+ .+++..  +....    ......+.... ...         
T Consensus       164 A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~----~~~~~~p~~~~-~~~---------  229 (715)
T 1wdk_A          164 AVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAK----RQPKLEKLKLN-AIE---------  229 (715)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHH----HGGGGSCCSCC-HHH---------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchh----cccccCccccC-chh---------
Confidence            99999999999999999999999999988888766665 333332  21100    00000000000 000         


Q ss_pred             cCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 018632          263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE  342 (353)
Q Consensus       263 ~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e  342 (353)
                           ....+..            +++.+.+-.+....|...+|++++.+...+++++++.|.+.+..++.   ++|+++
T Consensus       230 -----~~~~~~~------------~k~~~~~~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~---s~~~~~  289 (715)
T 1wdk_A          230 -----QMMAFET------------AKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAK---TSASNC  289 (715)
T ss_dssp             -----HHHHHHH------------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT---SHHHHH
T ss_pred             -----HHHHHHH------------HHHHHHHhcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---chhHHH
Confidence                 0000111            11223334444566888899999999889999999999999999998   999999


Q ss_pred             hhhheeccCC
Q 018632          343 VSNFQILNKH  352 (353)
Q Consensus       343 gi~afl~~~~  352 (353)
                      |+.+|+++|.
T Consensus       290 ~~~aF~~kr~  299 (715)
T 1wdk_A          290 LIGLFLNDQE  299 (715)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhhh
Confidence            9999998863

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=3.1e-44  Score=371.91  Aligned_cols=277  Identities=19%  Similarity=0.226  Sum_probs=215.3

Q ss_pred             ceEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCC-CcccCcchhhHHHhhhcCChHHH
Q 018632           35 QVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGR-AFCAGGDIVSLYHFMNQGKLEEC  108 (353)
Q Consensus        35 ~v~~~-~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~-~F~aG~Dl~~~~~~~~~~~~~~~  108 (353)
                      .+.++ .+++|++|||||| +.|+||.+|+.+|.++++.++.|++|++    | |+ +||+|+|++++..... ......
T Consensus         8 ~i~~~~~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~-~~~~~~   84 (725)
T 2wtb_A            8 KTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQK-GNVKEP   84 (725)
T ss_dssp             EEEEEECTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC-------------CC
T ss_pred             eEEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccc-hhhhhH
Confidence            57888 7789999999999 7899999999999999999999999888    8 75 9999999998754210 000000


Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HH
Q 018632          109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE  187 (353)
Q Consensus       109 ~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~  187 (353)
                      ..+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |.
T Consensus        85 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A~  164 (725)
T 2wtb_A           85 KAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKAL  164 (725)
T ss_dssp             SSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHHHH
Confidence            11233455667788899999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HhhhcC--CHH-HHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTD--DPS-VIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l-~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      +|++||+.++|+||+++||||+|+|++++.+.+..+ .+++..  ++. +..     +... .+                
T Consensus       165 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~-----~~~~-~~----------------  222 (725)
T 2wtb_A          165 EMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVS-----KTDK-LP----------------  222 (725)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGG-----CCTT-SC----------------
T ss_pred             HHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhh-----hccc-cC----------------
Confidence            999999999999999999999999999887666555 222221  000 000     0000 00                


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                         ......+.+         +|+.+.+.+..+.. .|...+|++++.+...+++++++.|.+.+..++.   ++|+++|
T Consensus       223 ---~~~~~~~~~---------~~a~~~~~~~~~g~-pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~---s~~~~~~  286 (725)
T 2wtb_A          223 ---PLGEAREIL---------TFAKAQTLKRAPNM-KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVK---LDTTKGL  286 (725)
T ss_dssp             ---CHHHHHHHH---------HHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             ---ccchHHHHH---------HHHHHHHHHhccCC-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---chhHHHH
Confidence               000011111         24556677777774 4667799999999999999999999999999987   9999999


Q ss_pred             hhheeccCC
Q 018632          344 SNFQILNKH  352 (353)
Q Consensus       344 i~afl~~~~  352 (353)
                      +.+|+++|.
T Consensus       287 ~~aF~~kr~  295 (725)
T 2wtb_A          287 IHVFFSQRG  295 (725)
T ss_dssp             HHHHHHHHG
T ss_pred             HHHhhhhhh
Confidence            999999864

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=3e-41  Score=330.38  Aligned_cols=190  Identities=14%  Similarity=0.159  Sum_probs=169.5

Q ss_pred             CCcCCCCceEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHhcC-CCccc----C-CCCCcccCc
Q 018632           28 VTDDLCNQVLVEGKANSRMAILNRPS----------ALNALNTNMGAKLNKLFKAWEND-PNIGF----G-SGRAFCAGG   91 (353)
Q Consensus        28 ~~~~~~~~v~~~~~~~v~~I~lnrp~----------~~Nal~~~~~~~L~~~l~~~~~d-~~v~v----g-~g~~F~aG~   91 (353)
                      +.+..+..|.++.+++|++|+||||+          +.|+||.+|+.+|.++++.++.| ++|++    | .|++||+|+
T Consensus        15 t~p~~~~~v~ve~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGa   94 (556)
T 2w3p_A           15 TDPSQYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGA   94 (556)
T ss_dssp             CCGGGCSSEEEEEETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEE
T ss_pred             CCCCcCceEEEEeeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCc
Confidence            34455677999999999999999998          89999999999999999999999 88888    7 889999999


Q ss_pred             chhhHHHhhhcCChHHHHHHHHHHHHHHHHH----hhCCCcEEEEEccccccccccccccCCeEEEeCc--eEEeccCCC
Q 018632           92 DIVSLYHFMNQGKLEECKDFFRTLYSFIYLL----GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL  165 (353)
Q Consensus        92 Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~--a~f~~pe~~  165 (353)
                      |++++...    ..+....+...+++++..+    ..+||||||+|||+|+|||++|+++||+|||+++  ++|++||++
T Consensus        95 DL~el~~~----~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~  170 (556)
T 2w3p_A           95 NIFMLGLS----THAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVP  170 (556)
T ss_dssp             CHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHH
T ss_pred             CHHHHhhc----ccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEeccccc
Confidence            99998652    2222334445566777888    9999999999999999999999999999999999  999999999


Q ss_pred             -cccccCccHHHHHh--hcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHH
Q 018632          166 -IGFHPDAGASFYLS--HLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEE  221 (353)
Q Consensus       166 -~G~~p~~g~~~~l~--r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~  221 (353)
                       +|++|++|++++|+  +++|.. |++|+++|+.++|+||+++||||+|+|++++.+.+.
T Consensus       171 ~LGL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~  230 (556)
T 2w3p_A          171 LLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQ  230 (556)
T ss_dssp             HHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHH
T ss_pred             ccCCCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHH
Confidence             99999999999999  999998 999999999999999999999999999877765444

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.77  E-value=8.6e-20  Score=185.08  Aligned_cols=164  Identities=18%  Similarity=0.162  Sum_probs=130.3

Q ss_pred             EeCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHHHH
Q 018632           40 GKANSRMAILNRPSALNA--LNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFR  113 (353)
Q Consensus        40 ~~~~v~~I~lnrp~~~Na--l~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~  113 (353)
                      .+++|++|++|+|...|+  ++..+..+|.++|+.+..|+++++    +.+    .|+|+...                .
T Consensus       299 ~~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~----------------~  358 (593)
T 3bf0_A          299 TGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTAS----------------E  358 (593)
T ss_dssp             CSCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHH----------------H
T ss_pred             CCCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHH----------------H
Confidence            457899999999988888  688999999999999999999887    432    47777532                1


Q ss_pred             HHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCC------------CcccccCc---------
Q 018632          114 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDA---------  172 (353)
Q Consensus       114 ~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~G~~p~~---------  172 (353)
                      .+.+.+.++..++|||||+|+|.|.|||+.|+++||++||++++.|+.+++            ++|+.|+.         
T Consensus       359 ~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~  438 (593)
T 3bf0_A          359 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV  438 (593)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCC
T ss_pred             HHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeeccccccc
Confidence            233456667789999999999999999999999999999999999999985            58887643         


Q ss_pred             ----cHH---------------HHHhhcChHH------HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH
Q 018632          173 ----GAS---------------FYLSHLPGHL------GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL  223 (353)
Q Consensus       173 ----g~~---------------~~l~r~~g~~------a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l  223 (353)
                          +.+               ..+.+.++..      +.+++++|+.++|+||+++||||+|++.+++.+.+..+
T Consensus       439 ~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~  514 (593)
T 3bf0_A          439 SITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAEL  514 (593)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHH
Confidence                222               3344444431      67899999999999999999999999776665444333

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.73  E-value=9.1e-18  Score=149.97  Aligned_cols=143  Identities=13%  Similarity=0.183  Sum_probs=116.9

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHH
Q 018632           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLY  116 (353)
Q Consensus        41 ~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~  116 (353)
                      .+.|++|+++.     ++++.+...|.+.|+.++++ ++++    ..    |.|+|+...                   .
T Consensus         7 ~~~V~vI~i~g-----~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~-------------------~   57 (230)
T 3viv_A            7 KNIVYVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM-------------------M   57 (230)
T ss_dssp             CCEEEEEEEES-----CBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH-------------------H
T ss_pred             CCeEEEEEEeC-----EECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH-------------------H
Confidence            45699999984     69999999999999999864 4554    32    667776432                   2


Q ss_pred             HHHHHHhhCCCcEEEEE---ccccccccccccccCCeEEEeCceEEeccCCCcccccCccHH---------------HHH
Q 018632          117 SFIYLLGTHLKPHVAIL---NGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS---------------FYL  178 (353)
Q Consensus       117 ~l~~~l~~~~kpvIaav---~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~---------------~~l  178 (353)
                      .++..|..+++|||++|   +|.|.|+|+.|+++||++++.++++|+.+++..+. |..|.+               ..+
T Consensus        58 ~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~l  136 (230)
T 3viv_A           58 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSL  136 (230)
T ss_dssp             HHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHH
Confidence            35566778999999999   99999999999999999999999999999987533 444432               246


Q ss_pred             hhcChH--H-HHHHHhcCCCCCHHHHHHcCccceecCC
Q 018632          179 SHLPGH--L-GEFLALTGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       179 ~r~~g~--~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      ++..|.  . +.+++.++..++|+||+++||||+|+++
T Consensus       137 a~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~  174 (230)
T 3viv_A          137 AQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  174 (230)
T ss_dssp             HHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred             HHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence            777885  5 8999999999999999999999999975

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.73  E-value=1.4e-17  Score=150.60  Aligned_cols=158  Identities=11%  Similarity=0.042  Sum_probs=115.8

Q ss_pred             eCCEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           41 KANSRMAILNRPSALNALNTN-------MGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        41 ~~~v~~I~lnrp~~~Nal~~~-------~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      ++.|++|+++.+=..+.-...       .+.+|.++|+.+..|++|++    +.    |.|+|+....            
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~~------------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYESA------------   65 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHHH------------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHHH------------
Confidence            467888988865422210111       35889999999999999987    43    5688875432            


Q ss_pred             HHHHHHHHHHHHHhh-CCCcEEEEEccccccccccccccCCeEEEeCceEEecc---------------------CCCcc
Q 018632          110 DFFRTLYSFIYLLGT-HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP---------------------ETLIG  167 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~-~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~p---------------------e~~~G  167 (353)
                          .+.+.+..+.. ++|||||+++|.|.|||+.|+++||++|+++++.|+.+                     +++.|
T Consensus        66 ----~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G  141 (240)
T 3rst_A           66 ----EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSG  141 (240)
T ss_dssp             ----HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESS
T ss_pred             ----HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecc
Confidence                23345556666 89999999999999999999999999999999999999                     55666


Q ss_pred             cccCccHH--------------------------HHHhhcChHHHHHHHhcCCCCCHHHHHHcCccceecCCCChhH
Q 018632          168 FHPDAGAS--------------------------FYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       168 ~~p~~g~~--------------------------~~l~r~~g~~a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                      ..+..+..                          ..-.|.+.....+.+++|+.+++++|+++||||++.+.+++.+
T Consensus       142 ~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~~~a~~A~~~GLVD~i~~~~~~~~  218 (240)
T 3rst_A          142 AHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVYDGRQAKKLNLVDELGFYDDTIT  218 (240)
T ss_dssp             TTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCEEEHHHHHHTTSSSEECCHHHHHH
T ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHH
Confidence            66655422                          1123444444334488999999999999999999997665543

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.52  E-value=2.6e-14  Score=127.04  Aligned_cols=133  Identities=13%  Similarity=0.114  Sum_probs=100.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCccc------CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDPNIGF------GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~v------g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      ++.++.+.+...|..++.++.++.      +.|+.+.+|.                         .++..+..+++||++
T Consensus        54 I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~-------------------------~I~~~i~~~~~pV~t  108 (218)
T 1y7o_A           54 VEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGL-------------------------AIVDTMNFIKADVQT  108 (218)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHH-------------------------HHHHHHHHSSSCEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHH-------------------------HHHHHHHhcCCCEEE
Confidence            889999999999999887654432      3333333222                         244456678999999


Q ss_pred             EEccccccccccccccCCe--EEEeCceEEeccCCCcccccCccH------------------HHHHhhcChH--H-HHH
Q 018632          132 ILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGA------------------SFYLSHLPGH--L-GEF  188 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~------------------~~~l~r~~g~--~-a~~  188 (353)
                      .|+|.|.++|+.|+++||.  |++.++++|++++.. |..|..|.                  ...+++..|.  . +.+
T Consensus       109 ~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~  187 (218)
T 1y7o_A          109 IVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHA  187 (218)
T ss_dssp             EEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             EEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            9999999999999999999  999999999999987 43442332                  2456666665  3 788


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCCh
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKL  216 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l  216 (353)
                      ++.+|..++|+||+++||||+|++++++
T Consensus       188 ~~~~~~~~ta~EA~e~GLVD~v~~~~~~  215 (218)
T 1y7o_A          188 DAERDNWMSAQETLEYGFIDEIMANNSL  215 (218)
T ss_dssp             HHHSCCCBCHHHHHHHTSCSEECCCC--
T ss_pred             HHhCCCEEcHHHHHHCCCCcEEcCcCCC
Confidence            8899999999999999999999987653

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.50  E-value=1.4e-13  Score=129.03  Aligned_cols=148  Identities=13%  Similarity=0.063  Sum_probs=106.8

Q ss_pred             eCCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           41 KANSRMAILNRPS---------ALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        41 ~~~v~~I~lnrp~---------~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      +|.-..|.-|++.         ..++++++......+.++.+++..--.+    ..|-..  |.+....           
T Consensus       115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~~PlI~lvdt~Ga~~--g~~ae~~-----------  181 (327)
T 2f9i_A          115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYP--GKAAEER-----------  181 (327)
T ss_dssp             TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCC--CHHHHHT-----------
T ss_pred             CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCc--chhhhhh-----------
Confidence            3444445556654         3478999999999999999887654333    223222  2221110           


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                        ........++.++..+++|+|++|+|.|.|||+.++++||++||+++++|++      +.|.++++.++.+..+.. +
T Consensus       182 --g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A  253 (327)
T 2f9i_A          182 --GQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIA  253 (327)
T ss_dssp             --THHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHH
T ss_pred             --hhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHH
Confidence              1223445677788999999999999999999999999999999999999985      355555555444444445 7


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      .++    ..++|++|+++|+||+|+|.
T Consensus       254 ~e~----~~itA~~a~~~GlVd~VV~e  276 (327)
T 2f9i_A          254 AET----MKITAHDIKQLGIIDDVISE  276 (327)
T ss_dssp             HHH----HTCBHHHHHHTTSSSEEECC
T ss_pred             HHH----cCCCHHHHHHcCCceEEecC
Confidence            776    78999999999999999984

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.47  E-value=7.6e-14  Score=129.69  Aligned_cols=146  Identities=15%  Similarity=0.155  Sum_probs=111.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  119 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  119 (353)
                      |+++..+..-..|+++..+...+.++++.+.++ .+.+    +.|     |+|+.+...        .    ...+.++.
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~--------~----l~~~~~i~  181 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALM--------S----LMQMAKTS  181 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHH--------H----HHHHHHHH
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHH--------H----HHHHHHHH
Confidence            556666666678999999999999999999887 5555    544     888854321        1    12234455


Q ss_pred             HHHh---hCCCcEEEEEcccccccc-ccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCC
Q 018632          120 YLLG---THLKPHVAILNGVTMGGG-AGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAK  195 (353)
Q Consensus       120 ~~l~---~~~kpvIaav~G~a~GgG-~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~  195 (353)
                      .++.   ..++|+|++|+|+|+||| +.++++||++||.++|+|++.           +...+.+.+|..     ++++.
T Consensus       182 ~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~-----l~~~~  245 (304)
T 2f9y_B          182 AALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK-----LPPGF  245 (304)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC-----CCTTT
T ss_pred             HHHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc-----CCccc
Confidence            5554   459999999999999999 778999999999999999987           344566666642     56889


Q ss_pred             CCHHHHHHcCccceecCCCChhHHHHHH
Q 018632          196 LNGAEMMACGLATHYSVSEKLPLIEEEL  223 (353)
Q Consensus       196 ~~a~eA~~~Glv~~vv~~~~l~~~~~~l  223 (353)
                      .+|+++.++|+||.|++++++.+....+
T Consensus       246 ~~Ae~~~~~Glvd~Vv~~~el~~~l~~l  273 (304)
T 2f9y_B          246 QRSEFLIEKGAIDMIVRRPEMRLKLASI  273 (304)
T ss_dssp             TBHHHHGGGTCCSEECCHHHHHHHHHHH
T ss_pred             CCHHHHHhcCCccEEeCcHHHHHHHHHH
Confidence            9999999999999999887665544444

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.46  E-value=4.2e-13  Score=126.25  Aligned_cols=136  Identities=12%  Similarity=-0.016  Sum_probs=104.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhcCCCccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEE
Q 018632           54 ALNALNTNMGAKLNKLFKAWENDPNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  130 (353)
Q Consensus        54 ~~Nal~~~~~~~L~~~l~~~~~d~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvI  130 (353)
                      ..++++++......+.++.+++..--.+   -.++++. |.....             .........++.++..+++|+|
T Consensus       151 ~~G~~~~~~~~Ka~r~~~~A~~~~lPlI~lvDt~Ga~~-g~~aE~-------------~g~~~~~a~~l~al~~~~vPvI  216 (339)
T 2f9y_A          151 NFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYP-GVGAEE-------------RGQSEAIARNLREMSRLGVPVV  216 (339)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCC-SHHHHH-------------TTHHHHHHHHHHHHHTCSSCEE
T ss_pred             hcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCcc-chHHHH-------------HHHHHHHHHHHHHHHhCCCCEE
Confidence            3478999999999999999887654333   2222221 222111             0123344567778899999999


Q ss_pred             EEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccce
Q 018632          131 AILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATH  209 (353)
Q Consensus       131 aav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~  209 (353)
                      ++|+|.|.|||+.++++||++||+++++|++      +.|.++++.++.+..+.. +.++    ..++|++|+++|+||+
T Consensus       217 avV~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~  286 (339)
T 2f9y_A          217 CTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDS  286 (339)
T ss_dssp             EEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSC
T ss_pred             EEEeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeE
Confidence            9999999999999999999999999999996      467777777777777766 7777    6799999999999999


Q ss_pred             ecCC
Q 018632          210 YSVS  213 (353)
Q Consensus       210 vv~~  213 (353)
                      |+|.
T Consensus       287 VV~e  290 (339)
T 2f9y_A          287 IIPE  290 (339)
T ss_dssp             CCCC
T ss_pred             EecC
Confidence            9984

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.79  E-value=2.6e-08  Score=87.61  Aligned_cols=129  Identities=16%  Similarity=0.114  Sum_probs=91.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCcc---c---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDPNIG---F---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~---v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      ++..+.+.+...|..++.++.++   +   +.|      +++..                   ...++..|..+++||++
T Consensus        36 I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPG------G~v~a-------------------~~~I~~~i~~~~~pV~~   90 (208)
T 2cby_A           36 VNDEIANRLCAQILLLAAEDASKDISLYINSPG------GSISA-------------------GMAIYDTMVLAPCDIAT   90 (208)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC------BCHHH-------------------HHHHHHHHHHCSSCEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCC------CCHHH-------------------HHHHHHHHHhcCCCEEE
Confidence            67889999999999887655433   2   333      22211                   22355566778999999


Q ss_pred             EEccccccccccccccCCe--EEEeCceEEeccCCCcccccCccHH------------------HHHhhcCh--HH-HHH
Q 018632          132 ILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS------------------FYLSHLPG--HL-GEF  188 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~------------------~~l~r~~g--~~-a~~  188 (353)
                      .|.|.|..+|..++++||.  |++.+++.+++....-|.   .|..                  ..+.+..|  .. ..+
T Consensus        91 ~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~  167 (208)
T 2cby_A           91 YAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEA  167 (208)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            9999999999999999998  999999999987765332   1110                  11222223  22 456


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCC
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSE  214 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~  214 (353)
                      ++..|..++++||+++||||+|.+..
T Consensus       168 ~~~~~~~~ta~eA~e~GLvD~i~~~~  193 (208)
T 2cby_A          168 DSDRDRWFTAAEALEYGFVDHIITRA  193 (208)
T ss_dssp             HHHTTCEEEHHHHHHHTSCSEECSCC
T ss_pred             HHhCCcEEcHHHHHHcCCCcEecCch
Confidence            78889999999999999999999653

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.40  E-value=1.5e-06  Score=75.87  Aligned_cols=134  Identities=16%  Similarity=0.100  Sum_probs=91.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCC---ccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEE
Q 018632           57 ALNTNMGAKLNKLFKAWENDPN---IGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHV  130 (353)
Q Consensus        57 al~~~~~~~L~~~l~~~~~d~~---v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvI  130 (353)
                      .++..+.+.+...|..++.++.   |.+   +.|+      ++.                   ....++..+..+++||+
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG------~v~-------------------~~~~I~~~i~~~~~~V~   89 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGG------SVT-------------------AGFAIYDTIQHIKPDVQ   89 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CHH-------------------HHHHHHHHHHHSSSCEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC------CHH-------------------HHHHHHHHHHHhcCCcE
Confidence            3889999999999999886543   333   3332      221                   11234555667899999


Q ss_pred             EEEccccccccccccccCC--eEEEeCceEEeccCCCcccccCccHH----H-----------HHhhcChH--H-HHHHH
Q 018632          131 AILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS----F-----------YLSHLPGH--L-GEFLA  190 (353)
Q Consensus       131 aav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~~----~-----------~l~r~~g~--~-a~~l~  190 (353)
                      +.+.|.|.++|..++++||  .|++.+++.|.+....-|..-...-.    .           .+....|.  . ..+++
T Consensus        90 t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~  169 (203)
T 3qwd_A           90 TICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDT  169 (203)
T ss_dssp             EEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             EEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence            9999999999999999999  69999999999866543321000000    0           11122222  2 44555


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCC
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEK  215 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~  215 (353)
                      -...-++|+||+++||||+|+.+..
T Consensus       170 ~~d~~lta~EA~e~GliD~I~~~~~  194 (203)
T 3qwd_A          170 DRDNFLTAEEAKEYGLIDEVMVPET  194 (203)
T ss_dssp             TSCCCEEHHHHHHHTSCSEECCCCC
T ss_pred             hcCceecHHHHHHcCCcCEecCCcc
Confidence            5566799999999999999997653

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.28  E-value=1.4e-06  Score=75.58  Aligned_cols=131  Identities=16%  Similarity=0.087  Sum_probs=87.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCcc---c---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDPNIG---F---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~v~---v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      ++..+.+.+...|..++.++.++   +   +.|      +++.                   ....++..|..+++||++
T Consensus        35 I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG------G~v~-------------------a~~~I~~~i~~~~~pV~~   89 (193)
T 1yg6_A           35 VEDHMANLIVAQMLFLEAENPEKDIYLYINSPG------GVIT-------------------AGMSIYDTMQFIKPDVST   89 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC------BCHH-------------------HHHHHHHHHHHSSSCEEE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC------CCHH-------------------HHHHHHHHHHhcCCCEEE
Confidence            78889999999999887654433   2   333      2221                   112345566678899999


Q ss_pred             EEccccccccccccccCCe--EEEeCceEEeccCCCccccc---CccHH------------HHHhhcChH--H-HHHHHh
Q 018632          132 ILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHP---DAGAS------------FYLSHLPGH--L-GEFLAL  191 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p---~~g~~------------~~l~r~~g~--~-a~~l~l  191 (353)
                      .+.|.|..+|.-++++||.  |++.+++.+++.....|...   +....            ..+.+..|.  . ..+++-
T Consensus        90 ~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~  169 (193)
T 1yg6_A           90 ICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTE  169 (193)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTS
T ss_pred             EEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Confidence            9999999999999999999  99999999988665433210   00000            001111121  2 334433


Q ss_pred             cCCCCCHHHHHHcCccceecCC
Q 018632          192 TGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       192 tG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      .+..++++||+++||||+|..+
T Consensus       170 ~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          170 RDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             SCEEEEHHHHHHHTSSSEECCC
T ss_pred             CCeEEcHHHHHHcCCCCEecCC
Confidence            4455799999999999999865

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.25  E-value=9.3e-06  Score=71.48  Aligned_cols=132  Identities=15%  Similarity=0.093  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCC--ccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDPN--IGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  132 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~--v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaa  132 (353)
                      ++..+...+...|..++.++.  |.+   +.|      +++.                   ....++..|...++||++.
T Consensus        48 I~~~~a~~i~~~L~~l~~~~~k~I~l~INSPG------Gsv~-------------------a~~~I~~~i~~~~~pV~t~  102 (215)
T 2f6i_A           48 INKKTADELISQLLYLDNINHNDIKIYINSPG------GSIN-------------------EGLAILDIFNYIKSDIQTI  102 (215)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEEEEEEECC------BCHH-------------------HHHHHHHHHHHSSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCcEEEEEECCC------CCHH-------------------HHHHHHHHHHhcCCCEEEE
Confidence            678888999999988765432  333   333      2221                   1123555667788999999


Q ss_pred             EccccccccccccccCCe--EEEeCceEEeccCCCcccc---cCccH----HH--------HHhhcCh--HH-HHHHHhc
Q 018632          133 LNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFH---PDAGA----SF--------YLSHLPG--HL-GEFLALT  192 (353)
Q Consensus       133 v~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~---p~~g~----~~--------~l~r~~g--~~-a~~l~lt  192 (353)
                      +.|.|..+|.-++++||.  |++.+++.+++.....|..   .+...    ..        .+.+..|  .. ..+++-.
T Consensus       103 v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~  182 (215)
T 2f6i_A          103 SFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDR  182 (215)
T ss_dssp             EEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             EeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhC
Confidence            999999999999999999  9999999998766543321   01100    00        0111111  12 3444444


Q ss_pred             CCCCCHHHHHHcCccceecCCC
Q 018632          193 GAKLNGAEMMACGLATHYSVSE  214 (353)
Q Consensus       193 G~~~~a~eA~~~Glv~~vv~~~  214 (353)
                      +..++++||+++||||+|.++.
T Consensus       183 ~~~lta~eA~e~GLiD~I~~~~  204 (215)
T 2f6i_A          183 DYYMNALEAKQYGIIDEVIETK  204 (215)
T ss_dssp             TCEECHHHHHHHTSCSEECCCS
T ss_pred             CeecCHHHHHHCCCCCEecCCc
Confidence            4557999999999999999754

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.19  E-value=5.4e-06  Score=75.43  Aligned_cols=139  Identities=12%  Similarity=0.055  Sum_probs=90.8

Q ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC---Cccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHH
Q 018632           46 MAILNRPSALNALNTNMGAKLNKLFKAWENDP---NIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFI  119 (353)
Q Consensus        46 ~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~---~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  119 (353)
                      +|.++.+     ++.++.+.+...|..++.++   .|.+   +.|+...+                         ...++
T Consensus        84 II~l~G~-----I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~a-------------------------g~aIy  133 (277)
T 1tg6_A           84 IVCVMGP-----IDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTA-------------------------GLAIY  133 (277)
T ss_dssp             EEEEESS-----BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHH-------------------------HHHHH
T ss_pred             EEEEcCE-----ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHH-------------------------HHHHH
Confidence            3555544     78889999999988875533   2333   33322211                         12244


Q ss_pred             HHHhhCCCcEEEEEccccccccccccccCCe--EEEeCceEEeccCCCcccccCccHHH---------------HHhhcC
Q 018632          120 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF---------------YLSHLP  182 (353)
Q Consensus       120 ~~l~~~~kpvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~---------------~l~r~~  182 (353)
                      ..|...++||++.|.|.|..+|.-|+++||.  |++.+++.++......|......-..               .+....
T Consensus       134 d~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~t  213 (277)
T 1tg6_A          134 DTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHT  213 (277)
T ss_dssp             HHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5566788999999999999999999999999  99999999988665433211000000               011111


Q ss_pred             h--HH-HHHHHhcCCCCCHHHHHHcCccceecCCC
Q 018632          183 G--HL-GEFLALTGAKLNGAEMMACGLATHYSVSE  214 (353)
Q Consensus       183 g--~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~  214 (353)
                      |  .. ..+++-.+..++++||+++||||+|....
T Consensus       214 G~~~e~i~~~~drd~~lta~EAle~GLID~I~~~~  248 (277)
T 1tg6_A          214 KQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHP  248 (277)
T ss_dssp             CCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSSC
T ss_pred             CCCHHHHHHHHhcCcccCHHHHHHCCCCCEecCcc
Confidence            2  12 34444445667999999999999999754

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.18  E-value=3.2e-06  Score=73.62  Aligned_cols=128  Identities=19%  Similarity=0.122  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCC---ccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWENDPN---IGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d~~---v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      ++.++.+.+...|..++.++.   |.+   +.|      +++.                   ....++..+...++||++
T Consensus        39 I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~-------------------~~~~I~~~i~~~~~~v~t   93 (201)
T 3p2l_A           39 VNDHSANLVIAQLLFLESEDPDKDIYFYINSPG------GMVT-------------------AGMGVYDTMQFIKPDVST   93 (201)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC------BCHH-------------------HHHHHHHHHHHSSSCEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC------CCHH-------------------HHHHHHHHHHHhCCCeEE
Confidence            788999999999998876543   333   333      2221                   112355566778899999


Q ss_pred             EEccccccccccccccCCe--EEEeCceEEeccCCCcccccCccHHH------------------HHhhcChH--H-HHH
Q 018632          132 ILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASF------------------YLSHLPGH--L-GEF  188 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~------------------~l~r~~g~--~-a~~  188 (353)
                      .+.|.|..+|.-+++++|-  |++.+++.+.+....-|.   .|-..                  .+.+..|.  . ..+
T Consensus        94 ~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~  170 (201)
T 3p2l_A           94 ICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVK  170 (201)
T ss_dssp             EEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             EEcCEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            9999999999999999998  999999999887664332   11110                  01111121  1 334


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCC
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      ++-...-++|+||+++||||+|+++
T Consensus       171 ~~~~~~~lta~EA~e~GliD~I~~~  195 (201)
T 3p2l_A          171 DTDRDNFMMADEAKAYGLIDHVIES  195 (201)
T ss_dssp             HTSSCEEEEHHHHHHHTSCSEECCC
T ss_pred             HhhcCeeecHHHHHHcCCccEecCC
Confidence            4333344799999999999999975

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=97.96  E-value=3.2e-05  Score=67.26  Aligned_cols=138  Identities=12%  Similarity=0.085  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHHHHhcC---CCccc---CCCCC----cccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCC
Q 018632           58 LNTNMGAKLNKLFKAWEND---PNIGF---GSGRA----FCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLK  127 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d---~~v~v---g~g~~----F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k  127 (353)
                      ++.++.+.+...|..++.+   ..|.+   +.|..    .-.-+|+                   .....++..|...+.
T Consensus        37 I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v-------------------~aglaIyd~m~~~~~   97 (205)
T 4gm2_A           37 IYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI-------------------TDVISIVDVINYISS   97 (205)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHH-------------------HHHHHHHHHHHHSSS
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCH-------------------HHHHHHHHHHHhcCC
Confidence            8899999999999888753   34554   33311    0000222                   112235566777899


Q ss_pred             cEEEEEccccccccccccccCC--eEEEeCceEEeccCCCccc----ccCccH------------HHHHhhcChH--H-H
Q 018632          128 PHVAILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGF----HPDAGA------------SFYLSHLPGH--L-G  186 (353)
Q Consensus       128 pvIaav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~----~p~~g~------------~~~l~r~~g~--~-a  186 (353)
                      ||...|-|.|.+.|..|++++|  .|++.+++++.+-....|.    ..+.--            ...+.+..|.  . .
T Consensus        98 ~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I  177 (205)
T 4gm2_A           98 DVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVI  177 (205)
T ss_dssp             CEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             CEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            9999999999999999999999  5999999999887665443    111000            0001111121  1 2


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSE  214 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~  214 (353)
                      .+++-...-++|+||+++||||+|+..+
T Consensus       178 ~~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          178 SNVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHHhcCCcccCHHHHHHcCCccEeecCC
Confidence            3344444559999999999999999754

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.86  E-value=1.4e-05  Score=80.04  Aligned_cols=157  Identities=10%  Similarity=-0.066  Sum_probs=100.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHh
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLG  123 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  123 (353)
                      |.++-.+..-..-++.+.....+..+++.+.+..--.++-  .=|+|+.+.+-.......  .   .+ .........+.
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~lPvI~l--~dSgGArlqe~~~~l~~~--~---~~-g~i~~~~~~ls  178 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYV--LNCSGVKFDEQEKVYPNR--R---GG-GTPFFRNAELN  178 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHTCCEEEE--ECCCEECGGGHHHHSSST--T---ST-THHHHHHHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcCCCEEEE--EeCCCCCccccchhcccc--c---cH-HHHHHHHHHHh
Confidence            4555555554667889999999999999887653322210  014566665433211100  0   00 11222344566


Q ss_pred             hCCCcEEEEEccccccccccccccCCeEEEeCc-eEEeccCCCcccccCccHHHHHhhcChHH-HHHHH-hcCCCCCHHH
Q 018632          124 THLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA-LTGAKLNGAE  200 (353)
Q Consensus       124 ~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~-ltG~~~~a~e  200 (353)
                      ...+|+|++|.|+|.|||... ..||++|++++ +.+++.-.      ...-...-.-.++.. |.+++ .+|+.+++++
T Consensus       179 ~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP------~vi~~~~~~~~~d~~~A~el~~~tge~v~~e~  251 (587)
T 1pix_A          179 QLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGA------GIMGGMNPKGHVDLEYANEIADMVDRTGKTEP  251 (587)
T ss_dssp             HTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCC------TTCCSCCSSSSCCHHHHHHHHHHHHTTCCCCC
T ss_pred             CCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCH------HHHhhhccccccchhHHHHHHHHhCCccChhh
Confidence            788999999999999999999 99999999874 88887321      110000001125667 89999 9999988766


Q ss_pred             H-------HHcCccceecCCCC
Q 018632          201 M-------MACGLATHYSVSEK  215 (353)
Q Consensus       201 A-------~~~Glv~~vv~~~~  215 (353)
                      .       .+.|++|.++++++
T Consensus       252 lgga~~h~~~~GvvD~vv~~e~  273 (587)
T 1pix_A          252 PGAVDIHYTETGFMREVYASEE  273 (587)
T ss_dssp             SSBHHHHTTTSCCSCEEESSHH
T ss_pred             cccHHHHHhhcCceeEecCCHH
Confidence            2       36999999998765

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.65  E-value=0.00092  Score=61.11  Aligned_cols=145  Identities=10%  Similarity=0.078  Sum_probs=90.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      |+++..+..-..-+++....+.+.++++.+.+..--.+   ..|     |+-..+       + ..... ........+.
T Consensus       123 V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~lPlI~l~dsg-----Gar~qE-------G-i~sl~-q~aki~~~l~  188 (285)
T 2f9i_B          123 FGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASG-----GARMQE-------G-IISLM-QMGKTSVSLK  188 (285)
T ss_dssp             EEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEEC-----SCCGGG-------H-HHHHH-HHHHHHHHHH
T ss_pred             EEEEEEccccccCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC-----Ccchhh-------h-hhhHh-HHHHHHHHHH
Confidence            45554444335578999999999999998887644332   222     222211       0 00011 1233334556


Q ss_pred             HHhhCCCcEEEEEccccccccccc-cccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018632          121 LLGTHLKPHVAILNGVTMGGGAGV-SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  199 (353)
Q Consensus       121 ~l~~~~kpvIaav~G~a~GgG~~l-al~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  199 (353)
                      ++....+|.|+.+-|+|+||+... ++.+|++++.++|.+++-.      |.+ ....+.+-+.         -.--+|+
T Consensus       189 ~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aG------P~v-i~~~~~~~~~---------e~~~~Ae  252 (285)
T 2f9i_B          189 RHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAG------RRV-IEQTINEKLP---------DDFQTAE  252 (285)
T ss_dssp             HHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSC------HHH-HHHHHTSCCC---------TTTTBHH
T ss_pred             HHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcC------HHH-HHHHhcccch---------HhHhhHH
Confidence            666789999999999999998554 8899999999888777631      211 1222211111         1112477


Q ss_pred             HHHHcCccceecCCCChhH
Q 018632          200 EMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       200 eA~~~Glv~~vv~~~~l~~  218 (353)
                      .+.+.|+||.|++++++..
T Consensus       253 ~~~~~G~iD~Iv~~~e~r~  271 (285)
T 2f9i_B          253 FLLEHGQLDKVVHRNDMRQ  271 (285)
T ss_dssp             HHHHTTCCSEECCGGGHHH
T ss_pred             HHHhcCCccEEeChHHHHH
Confidence            8889999999999876543

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.48  E-value=0.0011  Score=65.61  Aligned_cols=136  Identities=12%  Similarity=0.125  Sum_probs=89.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      |.++..+-.-..-++.+...+.+..+++.+.+..-  |.+ .     |+|+.+.+-        ......+.+.+.....
T Consensus       107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~d-----SGGARmqeg--------~~sl~~~~~i~~~~~~  173 (531)
T 3n6r_B          107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNGAPVIGIND-----SGGARIQEG--------VDSLAGYGEVFQRNIM  173 (531)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEC-----CCCBCGGGT--------HHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCcccccccHHHHHHHHHHHHHHHHcCCCEEEEeC-----CCccccCcc--------cchhhhHHHHHHHHHH
Confidence            44444555446688999999999999998876432  332 2     344444331        1111222222222221


Q ss_pred             HHhhCCCcEEEEEccccccccccccccCCeEEEeCc-eEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018632          121 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  199 (353)
Q Consensus       121 ~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  199 (353)
                       + .-.+|+|+.|.|+|.|||......||++|+.++ +.+++.                    |....+ ..+|+.++++
T Consensus       174 -~-s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a--------------------GP~vI~-~~~ge~v~~E  230 (531)
T 3n6r_B          174 -A-SGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT--------------------GPDVVK-TVTNEQVSAE  230 (531)
T ss_dssp             -T-TTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHH-HHHCCCCCHH
T ss_pred             -H-hCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeec--------------------CHHHHH-HHhCCccChh
Confidence             2 245999999999999999988888999999985 776652                    111111 2478999999


Q ss_pred             HH-------HHcCccceecCCCC
Q 018632          200 EM-------MACGLATHYSVSEK  215 (353)
Q Consensus       200 eA-------~~~Glv~~vv~~~~  215 (353)
                      +.       .+.|++|.++++++
T Consensus       231 ~LGGa~~h~~~sG~~d~v~~~e~  253 (531)
T 3n6r_B          231 ELGGATTHTRKSSVADAAFENDV  253 (531)
T ss_dssp             HHHBHHHHHHTTSCCSEEESSHH
T ss_pred             hcchHHHHhhccCcceEEeCCHH
Confidence            98       89999999998753

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.44  E-value=0.0017  Score=64.27  Aligned_cols=135  Identities=16%  Similarity=0.152  Sum_probs=89.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      |.++..+-.-..-++.....+.+..+++.+.+..-  |.+ .     |+|+.+.+-        ......+.+.+... .
T Consensus        99 v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~d-----SgGaRmqEg--------~~~l~~~~~i~~~~-~  164 (530)
T 3iav_A           99 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGIND-----SGGARIQEG--------VASLGAYGEIFRRN-T  164 (530)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEC-----CCSBCGGGT--------HHHHHHHHHHHHHH-H
T ss_pred             EEEEEECCCcceEeccHHHHHHHHHHHHHHHHcCCCEEEEEc-----CCCcchhhh--------hhhHHHHHHHHHHH-H
Confidence            44444444447788999999999999998876532  332 2     334444321        11222222222222 2


Q ss_pred             HHhhCCCcEEEEEccccccccccccccCCeEEEeCc-eEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018632          121 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  199 (353)
Q Consensus       121 ~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  199 (353)
                      .+.. .+|+|+.|.|+|.|||......||++|++++ +.+++.                    |....+ ..+|+.++++
T Consensus       165 ~~s~-~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~-~~~ge~v~~e  222 (530)
T 3iav_A          165 HASG-VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK-TVTGEDVGFE  222 (530)
T ss_dssp             HTTT-TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH-HHHCCCCCHH
T ss_pred             HHcC-CCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHH-HHhCCcCChh
Confidence            2333 4999999999999999998889999999885 888763                    222111 2478999998


Q ss_pred             HH-------HHcCccceecCCC
Q 018632          200 EM-------MACGLATHYSVSE  214 (353)
Q Consensus       200 eA-------~~~Glv~~vv~~~  214 (353)
                      +.       ...|++|.+++++
T Consensus       223 ~LGGa~~h~~~sGv~d~va~de  244 (530)
T 3iav_A          223 ELGGARTHNSTSGVAHHMAGDE  244 (530)
T ss_dssp             HHHBHHHHHHTSCCCSEEESSH
T ss_pred             hcchHHHHHhccCceeEEecCh
Confidence            76       6899999999875

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=97.36  E-value=0.002  Score=63.48  Aligned_cols=203  Identities=11%  Similarity=0.072  Sum_probs=134.8

Q ss_pred             EEEeCCEEEEEEcCCCCCC-------------CCCHHHHHHHHHHHHHHh-cCCCcccCCCCCcccCcchhhHHHh---h
Q 018632           38 VEGKANSRMAILNRPSALN-------------ALNTNMGAKLNKLFKAWE-NDPNIGFGSGRAFCAGGDIVSLYHF---M  100 (353)
Q Consensus        38 ~~~~~~v~~I~lnrp~~~N-------------al~~~~~~~L~~~l~~~~-~d~~v~vg~g~~F~aG~Dl~~~~~~---~  100 (353)
                      +.+..+++.++...|...-             .....|..+|.++|-.+. ++.+|..   -.|-+-+|...+...   +
T Consensus       272 i~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~---~~~~t~g~~~~~~~~~~~~  348 (556)
T 2w3p_A          272 IDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGT---WVFRTEGDARHLLAADASL  348 (556)
T ss_dssp             EETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCE---EEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhH---hhhhccCCHHHHhhhHHHH
Confidence            4455678888888765322             222346677866665554 3444443   112233344433321   1


Q ss_pred             -hcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEE-ccccccc-cccccccCCeEEEeC-------ceEEeccCCCccccc
Q 018632          101 -NQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL-NGVTMGG-GAGVSIPGTFRVACG-------KTVFATPETLIGFHP  170 (353)
Q Consensus       101 -~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav-~G~a~Gg-G~~lal~cD~ria~~-------~a~f~~pe~~~G~~p  170 (353)
                       ...+.....+....+.+.+.++--...-+++.| .|.|+.| =++|+++||..++-+       .+.+.+.+.++|..|
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (556)
T 2w3p_A          349 MQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYP  428 (556)
T ss_dssp             HHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGGTTSC
T ss_pred             HhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccccCccc
Confidence             122333344555566677888878888899998 5888766 478999999999953       488999999999999


Q ss_pred             CccHHHHHhhcC-hHH-HH--HHHhcCCCCCHHHHHHcCccceecCCCChhHHHHH-HHhhhcCCHHHHHHHHHHhhc
Q 018632          171 DAGASFYLSHLP-GHL-GE--FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEE-LGKLVTDDPSVIEACLEKYSD  243 (353)
Q Consensus       171 ~~g~~~~l~r~~-g~~-a~--~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~  243 (353)
                      ..-+..+|.+++ |.. ..  --...|+++++++|.++|||+...++-+-+...+. +.+.++.+|+++-.+-..++-
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (556)
T 2w3p_A          429 MVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDALTGLEANLRF  506 (556)
T ss_dssp             CTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHHHHHHHHHHSS
T ss_pred             CCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcchhccchhhccc
Confidence            877776777665 322 21  12346999999999999999988877666654444 478888999998776655543

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.20  E-value=0.00053  Score=69.27  Aligned_cols=84  Identities=13%  Similarity=-0.034  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhcCCCccc---CCCCCcccC-cchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEcccc
Q 018632           62 MGAKLNKLFKAWENDPNIGF---GSGRAFCAG-GDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVT  137 (353)
Q Consensus        62 ~~~~L~~~l~~~~~d~~v~v---g~g~~F~aG-~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a  137 (353)
                      ...++.+.|+.+..|+.++.   -- +  |.| +++...                ..+++.+..+...+|||||.+++ +
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~i-n--spGgG~v~~~----------------~~I~~~i~~~k~~gkpvva~~~~-a  130 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDL-K--NFAGGDQPSM----------------QYIGKALKEFRDSGKPVYAVGEN-Y  130 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEEC-T--EEEECCHHHH----------------HHHHHHHHHHHHTTCCEEEEESC-E
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEe-C--CCCCCcHHHH----------------HHHHHHHHHHHhcCCeEEEEEcc-c
Confidence            46778888999998888765   00 0  112 333221                12233444445557999999876 5


Q ss_pred             ccccccccccCCeEEEeCceEEeccCCC
Q 018632          138 MGGGAGVSIPGTFRVACGKTVFATPETL  165 (353)
Q Consensus       138 ~GgG~~lal~cD~ria~~~a~f~~pe~~  165 (353)
                      .-+|.-|+++||.+++.+.+.++...+.
T Consensus       131 as~~y~lAsaad~i~~~P~~~vg~~g~~  158 (593)
T 3bf0_A          131 SQGQYYLASFANKIWLSPQGVVDLHGFA  158 (593)
T ss_dssp             EHHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred             hhHHHHHHHhCCEEEECCCceEEEeccc
Confidence            6678999999999999999998887664

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.14  E-value=0.0042  Score=61.50  Aligned_cols=136  Identities=14%  Similarity=0.139  Sum_probs=89.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--cccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  121 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  121 (353)
                      |.++..+-.-..-++.....+.+..+++.+.+..-  |.+..    |+|+.+.+-..        ....+.+.+..+.. 
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~~----SGGARmqeg~~--------sl~~~~~i~~~~~~-  163 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYD----SGGARIQEGID--------SLSGYGKMFFANVK-  163 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEE----ECSBCGGGTHH--------HHHHHHHHHHHHHH-
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHcCCCEEEEEc----CCCCChhhHHH--------HHHHHHHHHHHHHH-
Confidence            44455555446788999999999999998876533  22211    55666643211        11223232223322 


Q ss_pred             HhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH--
Q 018632          122 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA--  199 (353)
Q Consensus       122 l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~--  199 (353)
                      + .-..|.|+.+.|+|.||+......||++|+.+++.+++.                    |....+ -.+|+.++.+  
T Consensus       164 ~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~vI~-~~~ge~~~~e~l  221 (523)
T 1on3_A          164 L-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIK-SVTGEDVTADEL  221 (523)
T ss_dssp             H-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHH-HHHCCCCCHHHH
T ss_pred             h-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHHHHH-HHhCCcCChHhc
Confidence            2 345999999999999999999999999999999887765                    111111 1357777764  


Q ss_pred             ---HH--HHcCccceecCCC
Q 018632          200 ---EM--MACGLATHYSVSE  214 (353)
Q Consensus       200 ---eA--~~~Glv~~vv~~~  214 (353)
                         |.  .+.|++|.+++++
T Consensus       222 ggae~h~~~~G~vd~vv~d~  241 (523)
T 1on3_A          222 GGAEAHMAISGNIHFVAEDD  241 (523)
T ss_dssp             HSHHHHHHTTCCCSEEESSH
T ss_pred             ccHHHHhhccCceEEEeCCH
Confidence               22  2699999999864

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.11  E-value=0.0047  Score=61.40  Aligned_cols=136  Identities=18%  Similarity=0.161  Sum_probs=87.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--cccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  121 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  121 (353)
                      |.++-.+-.-..-++.....+.+..+++.+.+..-  |.+-.    |+|+.+.+-.        .....+.+.+..+. .
T Consensus       110 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~d----SGGARmqeg~--------~sl~~~~~i~~~~~-~  176 (548)
T 2bzr_A          110 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGIND----GAGARIQEGV--------VSLGLYSRIFRNNI-L  176 (548)
T ss_dssp             EEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHTCCEEEEEC----CCSCCGGGTT--------HHHHHHHHHHHHHH-H
T ss_pred             EEEEEEcCccccCCCChhHHHHHHHHHHHHHHcCCCEEEEEc----CCCCCchhHH--------HHHHHHHHHHHHHH-H
Confidence            44444444446779999999999999999876533  22211    4556554321        11122222222222 1


Q ss_pred             HhhCCCcEEEEEccccccccccccccCCeEEEeCc-eEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH-
Q 018632          122 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA-  199 (353)
Q Consensus       122 l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~-  199 (353)
                      + .-.+|.|+.+.|+|.||+......||++|+.++ +.+++.                    |....+ -.+|+.++.+ 
T Consensus       177 ~-s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~-~~~ge~v~~e~  234 (548)
T 2bzr_A          177 A-SGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIK-TVTGEEVTMEE  234 (548)
T ss_dssp             T-TTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH-HHHCCCCCHHH
T ss_pred             h-cCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHH-HHhCCcCChHh
Confidence            2 345999999999999999998889999999996 877765                    111111 1357777764 


Q ss_pred             ----H--HHHcCccceecCCC
Q 018632          200 ----E--MMACGLATHYSVSE  214 (353)
Q Consensus       200 ----e--A~~~Glv~~vv~~~  214 (353)
                          +  +.+.|++|.+++++
T Consensus       235 lggae~h~~~sG~~d~vv~d~  255 (548)
T 2bzr_A          235 LGGAHTHMAKSGTAHYAASGE  255 (548)
T ss_dssp             HHBHHHHHHTSSCCSEEESSH
T ss_pred             cccHHHHhhccCceeEEeCCH
Confidence                2  23699999999864

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.05  E-value=0.0083  Score=59.39  Aligned_cols=136  Identities=11%  Similarity=0.110  Sum_probs=87.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--cccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  121 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  121 (353)
                      |.++..+-.-..-++.....+.+..+++.+.+..-  |.+..    |+|+.+.+-..        ....+.+.+..+.. 
T Consensus        93 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~~P~I~l~~----SGGaRmqeg~~--------sl~~~~~i~~~~~~-  159 (522)
T 1x0u_A           93 VFAYAQDFTVLGGSLGETHANKIVRAYELALKVGAPVVGIND----SGGARIQEGAL--------SLEGYGAVFKMNVM-  159 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEC----CCSBCGGGTHH--------HHHHHHHHHHHHHH-
T ss_pred             EEEEEecCceeCccccHHHHHHHHHHHHHHHHcCCCEEEEEc----CCCCChhHHHH--------HHHHHHHHHHHHHH-
Confidence            44444444446778999999999999998876533  22211    55666543211        11222222223322 


Q ss_pred             HhhCCCcEEEEEccccccccccccccCCeEEEeCc-e-EEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018632          122 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-T-VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  199 (353)
Q Consensus       122 l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a-~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  199 (353)
                      + .-..|.|+.+.|+|.||+......||++|+.++ + .+++.           +.    +++     + -.+|+.++.+
T Consensus       160 ~-s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~a-----------GP----~vI-----~-~~~ge~~~~e  217 (522)
T 1x0u_A          160 A-SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVT-----------GP----EIT-----K-VVLGEEVSFQ  217 (522)
T ss_dssp             H-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESS-----------CH----HHH-----H-HTTCCCCCHH
T ss_pred             h-CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEec-----------CH----HHH-----H-HHhCCcCChh
Confidence            2 345999999999999999999999999999997 7 66652           11    111     1 1467777764


Q ss_pred             -----HH--HHcCccceecCCC
Q 018632          200 -----EM--MACGLATHYSVSE  214 (353)
Q Consensus       200 -----eA--~~~Glv~~vv~~~  214 (353)
                           |.  .+.|++|.+++++
T Consensus       218 ~lggae~~~~~~G~~d~vv~~~  239 (522)
T 1x0u_A          218 DLGGAVVHATKSGVVHFMVDSE  239 (522)
T ss_dssp             HHHBHHHHHHTTCCCSEEESCH
T ss_pred             hcchHHHHhhcCceeEEEeCCH
Confidence                 22  2699999999864

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.80  E-value=0.003  Score=62.57  Aligned_cols=144  Identities=12%  Similarity=0.027  Sum_probs=88.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 018632           55 LNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  132 (353)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaa  132 (353)
                      .-+++++......+.++.+++..--.+  -....|..|.+-..             ....+...+++.++....+|.|+.
T Consensus       338 gG~l~~~~~~K~ar~i~~a~~~~~Plv~l~ds~G~~~G~~~E~-------------~G~~~~~Ak~l~~~~~~~vP~Isv  404 (522)
T 1x0u_A          338 GGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGYVPGTDQEY-------------KGIIRHGAKMLYAFAEATVPKITV  404 (522)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCSHHHHH-------------TTHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             CCCcCHHHHHHHHHHHHHHhhCCCCEEEEecCCCCCCchHHHH-------------HHHHHHHHHHHHHHHhCCCCEEEE
Confidence            357999999999999998876433222  11122333322111             112234455777888899999999


Q ss_pred             Eccccccccccccc----cCCeEEEeCceEEeccCCCcccccCccHHHHHhhc-ChH-----H-HHHHHh--cCCCCCHH
Q 018632          133 LNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PGH-----L-GEFLAL--TGAKLNGA  199 (353)
Q Consensus       133 v~G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~-~g~-----~-a~~l~l--tG~~~~a~  199 (353)
                      |-|.|.|||.....    .+|+++|.+++.+++-       .+-|....+.+. +..     . ..++.-  .-..-++.
T Consensus       405 i~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~-------gpegaa~Il~r~~i~~~~d~~~~~~~l~~~y~~~~~~~~  477 (522)
T 1x0u_A          405 IVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVT-------GPEGAVRILYRKEIQQASNPDDVLKQRIAEYRKLFANPY  477 (522)
T ss_dssp             EEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTSSSSSSSSSSSSSSHHHHHHHHHHHSSSH
T ss_pred             EeCCcccHHHHHhcccccCCCEEEEeCCCEEEec-------CHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhcCCHH
Confidence            99999999765443    4999999888777642       223333333322 111     0 011110  01124567


Q ss_pred             HHHHcCccceecCCCChhH
Q 018632          200 EMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       200 eA~~~Glv~~vv~~~~l~~  218 (353)
                      .+.+.|+||.|+++.++..
T Consensus       478 ~~~~~G~iD~II~p~~tR~  496 (522)
T 1x0u_A          478 WAAEKGLVDDVIEPKDTRR  496 (522)
T ss_dssp             HHHHTTSSSEECCGGGHHH
T ss_pred             HHHhcCCCcEeECHHHHHH
Confidence            8999999999999876653

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.71  E-value=0.0069  Score=60.16  Aligned_cols=140  Identities=17%  Similarity=0.155  Sum_probs=88.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC--Cccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDP--NIGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~--~v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      |.++..+..-+.-++.+.....+..+++.+.+..  -|.+ .+|+     +.+.+-.....  ...   .+ ........
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSgG-----ARl~~q~~~~~--~~~---~~-~~i~~~~~  191 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGG-----ANLPRQDEVFP--DRE---HF-GRIFFNQA  191 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCC-----BCGGGGGGTSS--STT---ST-THHHHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEECCCC-----CCCCCcceeec--ccc---cH-HHHHHHHH
Confidence            4445555554667899999999999999987653  3333 3232     32211000000  000   00 11111223


Q ss_pred             HHhhCCCcEEEEEccccccccccccccCCeEEEeC-ceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018632          121 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  199 (353)
Q Consensus       121 ~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~-~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  199 (353)
                      .+....+|+|+.|.|+|.|||......||++|+.+ ++.+++.          | .    +++     + ..+|+.++++
T Consensus       192 ~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~a----------G-P----~vi-----k-~~~ge~~~~e  250 (555)
T 3u9r_B          192 NMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLA----------G-P----PLV-----K-AATGEVVSAE  250 (555)
T ss_dssp             HHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSS----------C-H----HHH-----H-HHHCCCCCHH
T ss_pred             HHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEEc----------c-H----HHH-----H-HHhcCccChh
Confidence            45557899999999999999999999999998876 4544431          1 1    111     1 2578999999


Q ss_pred             HH-------HHcCccceecCCCC
Q 018632          200 EM-------MACGLATHYSVSEK  215 (353)
Q Consensus       200 eA-------~~~Glv~~vv~~~~  215 (353)
                      +.       ...|++|.++++++
T Consensus       251 ~LGGa~~h~~~sGv~d~v~~de~  273 (555)
T 3u9r_B          251 ELGGADVHCKVSGVADHYAEDDD  273 (555)
T ss_dssp             HHHBHHHHHHTTCSCSEEESSHH
T ss_pred             hccchhhhhhccCceeEEeCCHH
Confidence            98       88999999998765

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.62  E-value=0.014  Score=57.86  Aligned_cols=148  Identities=12%  Similarity=0.054  Sum_probs=91.0

Q ss_pred             cCCC-CCCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCC
Q 018632           50 NRPS-ALNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL  126 (353)
Q Consensus        50 nrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  126 (353)
                      |+|. ..-.++++-.....+.++.+++..--.+  -.-..|..|.+-..             ....+...+++..+....
T Consensus       337 ~~~~~~~G~~~~~~~~Kaar~i~~a~~~~~Plv~lvDtpG~~~G~~~E~-------------~g~~~~~A~~~~a~~~~~  403 (527)
T 1vrg_A          337 NQPSVLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEH-------------GGIIRHGAKLLYAYSEAT  403 (527)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHH-------------TTHHHHHHHHHHHHHHCC
T ss_pred             EcCcccCCCCCHHHHHHHHHHHHHHhhcCCCeEEEecCCCCcCchhhHH-------------hHHHHHHHHHHHHHhcCC
Confidence            4443 2347999999999999988865332222  11122444433221             122344456777888899


Q ss_pred             CcEEEEEcccccccccccccc----CCeEEEeCceEEeccCCCcccccCccHHHHHhhcC-h----HH-H-HHHH--hcC
Q 018632          127 KPHVAILNGVTMGGGAGVSIP----GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-G----HL-G-EFLA--LTG  193 (353)
Q Consensus       127 kpvIaav~G~a~GgG~~lal~----cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~-g----~~-a-~~l~--ltG  193 (353)
                      +|+|+.|-|.|.|||..-...    +|+++|.++++++       +.++-|....+.+.- .    .. . .++.  +.-
T Consensus       404 vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~  476 (527)
T 1vrg_A          404 VPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQ  476 (527)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHH
Confidence            999999999999988754443    8988887777665       444444444443321 1    11 1 1122  111


Q ss_pred             CCCCHHHHHHcCccceecCCCChh
Q 018632          194 AKLNGAEMMACGLATHYSVSEKLP  217 (353)
Q Consensus       194 ~~~~a~eA~~~Glv~~vv~~~~l~  217 (353)
                      ..-++..+.+.|+||.|+++.++.
T Consensus       477 ~~~~p~~~~~~g~iD~II~p~~tR  500 (527)
T 1vrg_A          477 QFANPYIAASRGYVDMVIDPRETR  500 (527)
T ss_dssp             HTSSHHHHHHTTSSSEECCGGGHH
T ss_pred             hhCCHHHHHHcCCCCeeeCHHHHH
Confidence            236778899999999999986654

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.59  E-value=0.018  Score=57.09  Aligned_cols=135  Identities=16%  Similarity=0.138  Sum_probs=85.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      |.++-.+-.-+.-++.....+.+..+++.+.+..-  |.+ .     |+|+.+.+-.        .....+.+.+.... 
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~lPvI~l~d-----SgGAR~qeg~--------~~l~g~~~~~~~~~-  165 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGIND-----SGGARIQEGV--------DALAGYGEIFLRNT-  165 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEE-----ECSBCGGGTH--------HHHHHHHHHHHHHH-
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHcCCCEEEEEC-----CCCCCccchh--------HHHHHHHHHHHHHH-
Confidence            44455554446778999999999999998876433  332 2     3344443211        11112222233332 


Q ss_pred             HHhhCCCcEEEEEccccccccccccccCCeEEEeCc-eEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH
Q 018632          121 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA  199 (353)
Q Consensus       121 ~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~  199 (353)
                       ......|+|+.|.|+|.|||......||++|+.++ +.+++.                    |....+ ..+|+.++.+
T Consensus       166 -~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~a--------------------GP~vi~-~~~ge~v~~e  223 (527)
T 1vrg_A          166 -LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT--------------------GPNVIK-AVTGEEISQE  223 (527)
T ss_dssp             -HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHH-HHHCCCCCHH
T ss_pred             -HhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEec--------------------CHHHHH-HHhCCCCCcc
Confidence             22456999999999999999998889999999987 764432                    111111 1357777764


Q ss_pred             -----H-H-HHcCccceecCCC
Q 018632          200 -----E-M-MACGLATHYSVSE  214 (353)
Q Consensus       200 -----e-A-~~~Glv~~vv~~~  214 (353)
                           + . .+.|++|.+++++
T Consensus       224 ~lggae~~~~~~G~vd~vv~d~  245 (527)
T 1vrg_A          224 DLGGAMVHNQKSGNAHFLADND  245 (527)
T ss_dssp             HHHBHHHHHHTSCCCSEEESSH
T ss_pred             ccccHHHHhhcccceEEEecCH
Confidence                 2 2 2699999999864

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.48  E-value=0.012  Score=58.33  Aligned_cols=148  Identities=14%  Similarity=0.002  Sum_probs=92.1

Q ss_pred             cCCC-CCCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCC
Q 018632           50 NRPS-ALNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL  126 (353)
Q Consensus        50 nrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  126 (353)
                      |+|. ..-.++++-.....+.++.+++..--.+  -.-..|..|.+-..             ....+...+++..+....
T Consensus       333 n~~~~~~G~~~~~~a~Kaar~i~~~~~~~iPlv~lvDtpGf~~G~~~E~-------------~Gi~~~~A~~l~a~a~~~  399 (523)
T 1on3_A          333 NQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEY-------------GGIIRHGAKMLYAYSEAT  399 (523)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHH-------------TTHHHHHHHHHHHHHHCC
T ss_pred             ecCCccCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcCcchHHHH-------------hhHHHHHHHHHHHHhcCC
Confidence            4443 2247999999999999988865433222  21123555543321             123344566778888899


Q ss_pred             CcEEEEEcccccccccccccc----CCeEEEeCceEEeccCCCcccccCccHHHHHhhcC-hH----H-H-HHHHh--cC
Q 018632          127 KPHVAILNGVTMGGGAGVSIP----GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-GH----L-G-EFLAL--TG  193 (353)
Q Consensus       127 kpvIaav~G~a~GgG~~lal~----cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~-g~----~-a-~~l~l--tG  193 (353)
                      +|+|+.|=|.++|||+.-...    +|+++|.++++++       +.++-|....+.+.- ..    . . .++.-  .-
T Consensus       400 vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~  472 (523)
T 1on3_A          400 VPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQN  472 (523)
T ss_dssp             SCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHH
Confidence            999999999999998765544    8888777766665       444444444443321 11    1 1 11211  11


Q ss_pred             CCCCHHHHHHcCccceecCCCChh
Q 018632          194 AKLNGAEMMACGLATHYSVSEKLP  217 (353)
Q Consensus       194 ~~~~a~eA~~~Glv~~vv~~~~l~  217 (353)
                      ..-++..+.+.|+||.|+++.++.
T Consensus       473 ~~~~p~~~a~~g~iD~II~p~~tR  496 (523)
T 1on3_A          473 AFNTPYVAAARGQVDDVIDPADTR  496 (523)
T ss_dssp             HHSSHHHHHHTTSSSEECCGGGHH
T ss_pred             hhCCHHHHHhcCCCCEeeCHHHHH
Confidence            125678899999999999986654

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.07  E-value=0.024  Score=56.41  Aligned_cols=149  Identities=15%  Similarity=0.099  Sum_probs=91.4

Q ss_pred             cCCC-CCCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCC
Q 018632           50 NRPS-ALNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL  126 (353)
Q Consensus        50 nrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  126 (353)
                      |+|. ..-+++++-.....+.++.+++..--.+  -....|..|.+-..             ....+...+++..+....
T Consensus       354 n~~~~~~G~l~~~~a~Kaar~i~~a~~~~iPlv~lvDt~Gf~~G~~~E~-------------~Gi~~~ga~~l~a~~~~~  420 (548)
T 2bzr_A          354 NQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEY-------------NGIIRRGAKLLYAYGEAT  420 (548)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHH-------------TTHHHHHHHHHHHHHHCC
T ss_pred             ECCcccCCCCCHHHHHHHHHHHHHHHhcCCCEEEEeeccCCCCChHHHH-------------hhHHHHHHHHHHHHhCCC
Confidence            4443 2347999999999999998875433222  22223555544322             112344556777788899


Q ss_pred             CcEEEEEccccccccccccc----cCCeEEEeCceEEeccCCCcccccCccHHHHHhhc-ChH------H-H---HHHHh
Q 018632          127 KPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PGH------L-G---EFLAL  191 (353)
Q Consensus       127 kpvIaav~G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~-~g~------~-a---~~l~l  191 (353)
                      +|+|+.|=|.|+|||..-..    .+|+++|.++++++       +..+-|....+.+. ...      . +   .++.-
T Consensus       421 VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~-------Vmgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~  493 (548)
T 2bzr_A          421 VPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIA-------VMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQ  493 (548)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTCCC----------CHHHHHHHHH
T ss_pred             CCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEE-------ecCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHH
Confidence            99999999999998876443    49998888777766       33334444444432 110      1 1   11211


Q ss_pred             --cCCCCCHHHHHHcCccceecCCCChhH
Q 018632          192 --TGAKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       192 --tG~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                        .-..-++..+.+.|+||.|+++.+...
T Consensus       494 ~y~~~~~~p~~~a~~g~iD~II~p~~tR~  522 (548)
T 2bzr_A          494 EYEDTLVNPYVAAERGYVGAVIPPSHTRG  522 (548)
T ss_dssp             HHHHHHSBSHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHhhCCHHHHHhcCCCceeeCHHHHHH
Confidence              011245577999999999999876543

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=95.84  E-value=0.15  Score=51.06  Aligned_cols=143  Identities=15%  Similarity=0.044  Sum_probs=91.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 018632           55 LNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  132 (353)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaa  132 (353)
                      .-.++++-.....+.++..+...--.+  -.-..|..|.+-.             .....+...+++.++....+|+|+.
T Consensus       384 ~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpGf~~G~~~E-------------~~Gi~~~gA~~~~a~a~a~vP~itv  450 (587)
T 1pix_A          384 GGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAE-------------KAELLGLGQSLIYSIQTSHIPQFEI  450 (587)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHH-------------HTTHHHHHHHHHHHHHTCCCCEEEE
T ss_pred             CCCcCHHHHHHHHHHHHHhhcCCCCeEEEecCCCCCCcHHHH-------------HHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            356999999999999987765433222  2223355554322             1223456677889999999999999


Q ss_pred             Ecccccccccccccc----C--CeEEEeCceEEeccCCCcccccCccHHHHHhhcC-hH----------H-H--HHHH--
Q 018632          133 LNGVTMGGGAGVSIP----G--TFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-GH----------L-G--EFLA--  190 (353)
Q Consensus       133 v~G~a~GgG~~lal~----c--D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~-g~----------~-a--~~l~--  190 (353)
                      |-|.++|||..-...    +  |+++|.++++++       +..+-|....+.+.- ..          . +  .++.  
T Consensus       451 I~g~~~Ggg~~am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~~  523 (587)
T 1pix_A          451 TLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQA  523 (587)
T ss_dssp             ECSEEETTHHHHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             EcCCCccHHHHHhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHH
Confidence            999999988543332    5  888877777766       443344443443221 10          0 0  0010  


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhH
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                      +. +..++..|.+.|+||.|+++.+...
T Consensus       524 y~-~~~~p~~aa~~g~iD~VI~p~~tR~  550 (587)
T 1pix_A          524 FY-TKSRPKVCAELGLVDEIVDMNKIRG  550 (587)
T ss_dssp             HH-HTTSHHHHHHHTSSSEECCTTTHHH
T ss_pred             HH-HhCCHHHHHhcCCCccccCHHHHHH
Confidence            01 2488999999999999999887653

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=95.37  E-value=0.065  Score=52.93  Aligned_cols=150  Identities=14%  Similarity=0.086  Sum_probs=93.0

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHh
Q 018632           47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLG  123 (353)
Q Consensus        47 I~lnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  123 (353)
                      |.=|+|. ..-.++++-.....+.++..++..--.+  -.-..|..|.+-.             .....+...+++.++.
T Consensus       342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~~~iPlv~lvDtpGf~~G~~~E-------------~~Gi~~~gAk~l~a~a  408 (531)
T 3n6r_B          342 VVANQPLVLAGCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPGFLPGTSQE-------------YGGVIKHGAKLLYAYG  408 (531)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECSBCCSHHHH-------------HTTHHHHHHHHHHHHH
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHhhccCCCEEEEeCCCCCCCCHHHH-------------HhhHHHHHHHHHHHHH
Confidence            3345553 2247999999999999987775432222  1112244443322             1223455667888999


Q ss_pred             hCCCcEEEEEccccccccccccc----cCCeEEEeCceEEeccCCCcccccCccHHHHHhhc-Ch----H-H-HHHHHhc
Q 018632          124 THLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PG----H-L-GEFLALT  192 (353)
Q Consensus       124 ~~~kpvIaav~G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~-~g----~-~-a~~l~lt  192 (353)
                      ...+|+|+.|-|.++|||..-..    .+|+++|.++++++       +.++-|....+.+. +.    . . ..++  .
T Consensus       409 ~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~-------Vm~pegaa~Il~r~~~~~~~~~~~~~~~y--~  479 (531)
T 3n6r_B          409 EATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVA-------VMGAKGATEIIHRGDLGDPEKIAQHTADY--E  479 (531)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHCCTTTTSTTHHHHHHHHH--H
T ss_pred             hCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEe-------cCCHHHHHHHHhcccccchhHHHHHHHHH--H
Confidence            99999999999999999875444    38998888777665       33333444334332 21    1 1 1111  1


Q ss_pred             CCCCCHHHHHHcCccceecCCCChhH
Q 018632          193 GAKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       193 G~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                      -+.-++..|.+.|++|.|+++.+...
T Consensus       480 ~~~~~p~~aa~~~~vD~vIdP~~TR~  505 (531)
T 3n6r_B          480 ERFANPFVASERGFVDEVIQPRSTRK  505 (531)
T ss_dssp             HHHSSSHHHHHHTSSSEECCGGGHHH
T ss_pred             HHhcCHHHHHhcCccCcccCHHHHHH
Confidence            12246667889999999999877653

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.20  E-value=0.063  Score=53.67  Aligned_cols=158  Identities=13%  Similarity=-0.024  Sum_probs=87.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC--Cccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDP--NIGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIY  120 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~--~v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (353)
                      |.++-.+..-+.-++.+...+.+..+++.+.+..  -|.+ -+|     |+.+.+-....  ....   .+.+ ...-..
T Consensus       108 V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~lPvI~l~dSg-----GArl~~qe~~~--~~l~---~~g~-if~~~~  176 (588)
T 3gf3_A          108 VYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCS-----GVEFPNQDKVY--PNRR---GGGT-PFFRNS  176 (588)
T ss_dssp             EEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHTCCEEEEECCC-----CBCGGGHHHHS--SSTT---STTH-HHHHHH
T ss_pred             EEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCC-----CcCcccccccc--cchh---hHHH-HHHHHH
Confidence            4444444444667889999999999999887643  3333 333     33332100000  0000   0011 111223


Q ss_pred             HHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCC--cccccCccHHHHHhhc---ChHH-HHHHHhcCC
Q 018632          121 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL--IGFHPDAGASFYLSHL---PGHL-GEFLALTGA  194 (353)
Q Consensus       121 ~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~--~G~~p~~g~~~~l~r~---~g~~-a~~l~ltG~  194 (353)
                      .+....+|+|+.|-|+|.|||...++++|++++.+++.+++....  -|+.|.+  . +.+.-   +... ..+-..+.+
T Consensus       177 ~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g--~-~~~~~~~~~~~~~~ge~~vs~e  253 (588)
T 3gf3_A          177 ELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG--Y-IDDEAAEQIIAAQIENSKLKVP  253 (588)
T ss_dssp             HHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHHHTTCC
T ss_pred             HHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc--c-ccccchhhhhhhhccccccChh
Confidence            445568999999999999998866888888888889988875332  1211111  0 01111   0111 122224666


Q ss_pred             CCCHHHHH--HcCccceecCCCC
Q 018632          195 KLNGAEMM--ACGLATHYSVSEK  215 (353)
Q Consensus       195 ~~~a~eA~--~~Glv~~vv~~~~  215 (353)
                      .+.+.+..  ..|++|.++++++
T Consensus       254 eLGGa~~h~~~sGv~d~~a~de~  276 (588)
T 3gf3_A          254 APGSVPIHYDETGFFREVYQNDL  276 (588)
T ss_dssp             CTTBHHHHTTTSCCSCEEESSHH
T ss_pred             hccchhhhccccccceEEeCCHH
Confidence            67666666  5999999998764

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=95.08  E-value=0.13  Score=50.86  Aligned_cols=151  Identities=15%  Similarity=0.127  Sum_probs=94.0

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHH
Q 018632           47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLL  122 (353)
Q Consensus        47 I~lnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  122 (353)
                      |.=|+|. ..-.++++......+.++..++..--.+   -.+ .|-.|.+-.             .....+...+++.++
T Consensus       336 vian~~~~~~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtp-Gf~~G~~~E-------------~~gi~~~~Ak~l~a~  401 (530)
T 3iav_A          336 IVANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVP-GFLPGVDQE-------------HDGIIRRGAKLIFAY  401 (530)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEEC-CBCCCHHHH-------------HTTHHHHHHHHHHHH
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHHHHHhcCCCEEEEeeCC-CCCccHHHH-------------HhhHHHHHHHHHHHH
Confidence            4445553 2257999999999999988776433222   221 255555432             123456667788899


Q ss_pred             hhCCCcEEEEEccccccccccccc----cCCeEEEeCceEEeccCCCcccccCccHHHHHhhc-Ch------HH-HHHHH
Q 018632          123 GTHLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PG------HL-GEFLA  190 (353)
Q Consensus       123 ~~~~kpvIaav~G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~-~g------~~-a~~l~  190 (353)
                      ....+|+|+.|-|.++|||.....    .+|+++|.++++++.       .++-|....+.+. +-      .. -.++.
T Consensus       402 a~a~vP~itvI~g~~~GGa~~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~~~~~~d~~~~~~~~~  474 (530)
T 3iav_A          402 AEATVPLITVITRKAFGGAYVVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATRARLI  474 (530)
T ss_dssp             HHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTTSTTCTTCHHHHHHHH
T ss_pred             HhCCCCEEEEEeCCcchHHHHHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhhhhcccCHHHHHHHHH
Confidence            999999999999999987764332    379988888777663       3333344333332 10      00 11111


Q ss_pred             --hcCCCCCHHHHHHcCccceecCCCChhH
Q 018632          191 --LTGAKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       191 --ltG~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                        +.-+..++..|.+.|+||.|+++.+...
T Consensus       475 ~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~  504 (530)
T 3iav_A          475 QEYEDALLNPYTAAERGYVDAVIMPSDTRR  504 (530)
T ss_dssp             HHHHHHHSSSHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHHhcCCHHHHHhcCCCCcccCHHHHHH
Confidence              1111247778889999999999887653

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=93.76  E-value=0.37  Score=48.16  Aligned_cols=140  Identities=13%  Similarity=0.065  Sum_probs=87.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 018632           56 NALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  133 (353)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav  133 (353)
                      -.++++-...-.+.++..++-.--.+  -.-..|..|.+-.+             ....+...+++.++....+|+|+.|
T Consensus       387 G~l~~~~a~Kaarfi~lcd~f~iPlv~lvDtpGf~~G~~aE~-------------~Gi~~~gAk~l~a~a~a~VP~itvI  453 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEK-------------AELLGLGQSLIYSIENSKLPSLEIT  453 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHH-------------TTHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhhcCCCeEEEecCCCCCCCHHHHH-------------HHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            36889999999999988876432222  22234555543321             2234556678899999999999999


Q ss_pred             cccccccccccccc----C--CeEEEeCceEEeccCCCcccccCccHHHHHhh-cC------hH----------H-HHHH
Q 018632          134 NGVTMGGGAGVSIP----G--TFRVACGKTVFATPETLIGFHPDAGASFYLSH-LP------GH----------L-GEFL  189 (353)
Q Consensus       134 ~G~a~GgG~~lal~----c--D~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r-~~------g~----------~-a~~l  189 (353)
                      -|.++|||....+.    .  |+++|.++++++       +.++-|....+.+ .+      |.          . ..++
T Consensus       454 ~g~~~Ggg~~am~~~~~~~~~~~~~awp~A~~s-------Vm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  526 (588)
T 3gf3_A          454 IRKASAAAHYVLGGPQGNNTNVFSIGTGACEYY-------VMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQMY  526 (588)
T ss_dssp             SSEEETTHHHHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHhcccccCCccceEEECCCceEE-------eCCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHHHHH
Confidence            99999887643322    2  366666666665       4433344433332 11      10          0 1111


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhH
Q 018632          190 ALTGAKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       190 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                      -   +..++--|.+.|+||.|+++.+...
T Consensus       527 ~---~~~~p~~aA~r~~vD~VIdP~~TR~  552 (588)
T 3gf3_A          527 T---DKSRPKYCTEKGMVDEIVDMTEVRP  552 (588)
T ss_dssp             H---HTTSHHHHHHTTSSSEECCGGGHHH
T ss_pred             H---HhCCHHHHHhcCCCCeeeCHHHHHH
Confidence            1   2358889999999999999987654

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=91.98  E-value=1  Score=44.65  Aligned_cols=143  Identities=10%  Similarity=-0.040  Sum_probs=86.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCC--cccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 018632           56 NALNTNMGAKLNKLFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  133 (353)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~--v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav  133 (353)
                      -.++++......+.++..++..-  |.+-.-..|..|.+-..             ....+...+++.++....+|+|+.|
T Consensus       366 G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpGf~~G~~~E~-------------~Gi~~~gAk~~~a~~~a~vP~itvi  432 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGQKYEA-------------GGIAKHGAKLVTAVACARVPKFTVL  432 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHHTCCEEEEEEECCBCCSHHHHH-------------TTHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHhcCCCCEEEEecCcCCCCCHHHHH-------------HHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            57999999999988888765332  22211122544443221             1224456678888999999999999


Q ss_pred             cccccccccccc----ccCCeEEEeCceEEeccCCCcccccCccHHHHHhhc-------Ch-----H-H-HH-H-HHh-c
Q 018632          134 NGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-------PG-----H-L-GE-F-LAL-T  192 (353)
Q Consensus       134 ~G~a~GgG~~la----l~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~-------~g-----~-~-a~-~-l~l-t  192 (353)
                      -|.++|||..-.    +.+|+++|.+++.++.       ..+-|...+|...       .|     . . +. + +.- -
T Consensus       433 ~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~V-------mgpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~y  505 (555)
T 3u9r_B          433 IGGSFGAGNYGMCGRAYDPRFLWMWPNARIGV-------MGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQY  505 (555)
T ss_dssp             EEEEETTHHHHTTCGGGCCSEEEECTTCEEES-------SCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             eCCccchhhHhhcCccCCCCeEEEcCCcEEEc-------CCHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHH
Confidence            999998875432    3479998887777763       3333333333210       00     0 0 10 0 000 0


Q ss_pred             CCCCCHHHHHHcCccceecCCCChhH
Q 018632          193 GAKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       193 G~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                      -+..++-.|.+.|++|.|+++.+...
T Consensus       506 ~~~~~p~~aa~r~~vD~vIdP~~TR~  531 (555)
T 3u9r_B          506 EHQGHPYYSSARLWDDGVIDPAQTRE  531 (555)
T ss_dssp             HHHHSHHHHHHTTSSSCBCCGGGHHH
T ss_pred             HHhCCHHHHhhccccCcccChHHHHH
Confidence            12246777888999999999877653

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=91.56  E-value=0.073  Score=54.37  Aligned_cols=37  Identities=14%  Similarity=0.073  Sum_probs=33.2

Q ss_pred             CCCcEEEEEccccccccccccccCCeEEEeCceEEec
Q 018632          125 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT  161 (353)
Q Consensus       125 ~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~  161 (353)
                      ...|+|+.|.|+|.|||..+...||++|+.+++.+.+
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~ifl  281 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIIL  281 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEES
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEE
Confidence            5789999999999999999999999999999875443

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=89.38  E-value=0.15  Score=52.62  Aligned_cols=38  Identities=11%  Similarity=0.074  Sum_probs=34.3

Q ss_pred             CCCcEEEEEccccccccccccccCCeEEEeCceEEecc
Q 018632          125 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP  162 (353)
Q Consensus       125 ~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~p  162 (353)
                      ...|+|+.|.|.|.|||..++..||++|+.+++.+.+.
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~lt  295 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILT  295 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESS
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEec
Confidence            47999999999999999999999999999998776653

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=81.58  E-value=8.2  Score=39.79  Aligned_cols=93  Identities=13%  Similarity=0.057  Sum_probs=62.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 018632           56 NALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAIL  133 (353)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav  133 (353)
                      -.++++-.....+.++.++...--.+  -.-..|..|.+-.             .....+...+++.++..+.+|+|+.|
T Consensus       462 G~l~~~~a~KaarfI~~cd~f~iPlv~LvDtpGf~~G~~aE-------------~~Gi~~~gAkll~A~a~a~VP~itvI  528 (793)
T 2x24_A          462 QVWFPDSAYKTAQAIKDFNREKLPLMIFANWRGFSGGMKDM-------------YDQVLKFGAYIVDGLRKYRQPVLIYI  528 (793)
T ss_dssp             TEECHHHHHHHHHHHHHHHTTTCCEEEECCBCEECCSHHHH-------------HTTHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CcccHHHHHHHHHHHHHhccCCCCEEEEecCCCCCCCHHHH-------------HhhHHHHHHHHHHHHHhcCCCEEEEE
Confidence            36999999999999999875433222  3334465555432             12234556778899999999999999


Q ss_pred             --cccccccccccc---ccCCe--EEEeCceEEec
Q 018632          134 --NGVTMGGGAGVS---IPGTF--RVACGKTVFAT  161 (353)
Q Consensus       134 --~G~a~GgG~~la---l~cD~--ria~~~a~f~~  161 (353)
                        .|-+.||+..++   +..|+  ++|.++++++.
T Consensus       529 ~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~V  563 (793)
T 2x24_A          529 PPYAEVRGGSWAVMDTSINPLCIEMYADRESRASV  563 (793)
T ss_dssp             CTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEES
T ss_pred             ecCCcccchhHHhhhcccCccHHHHhhhccCEEEe
Confidence              898877654332   35666  56666666553

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=80.22  E-value=9.6  Score=38.98  Aligned_cols=104  Identities=14%  Similarity=0.112  Sum_probs=68.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 018632           56 NALNTNMGAKLNKLFKAWENDPNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  132 (353)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaa  132 (353)
                      -.++++-.....+.++..++..++-+   -.-..|..|.+-..             ....+...+++.++....+|+|+.
T Consensus       447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvDtpGf~~G~~aE~-------------~Gi~k~gAkll~A~a~a~VP~itV  513 (758)
T 3k8x_A          447 QVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMF-------------NEVLKYGSFIVDALVDYKQPIIIY  513 (758)
T ss_dssp             TEECHHHHHHHHHHHHHHHHTSCCCEEECCCCCEECCSHHHHH-------------TTHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCEEEEecCCCCCCCHHHHH-------------ccHHHHHHHHHHHHHhCCCCEEEE
Confidence            46889999999999998887222222   33345666654321             223455667889999999999999


Q ss_pred             Ec--ccccccccccccc----CCe--EEEeCceEEeccCCCcccccCccHHHHHhh
Q 018632          133 LN--GVTMGGGAGVSIP----GTF--RVACGKTVFATPETLIGFHPDAGASFYLSH  180 (353)
Q Consensus       133 v~--G~a~GgG~~lal~----cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~l~r  180 (353)
                      |-  |-+.||++ ++++    +|+  ++|.++|.+       |+.++-|+..++.+
T Consensus       514 I~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~i-------sVM~pEgaa~Il~r  561 (758)
T 3k8x_A          514 IPPTGELRGGSW-VVVDPTINADQMEMYADVNARA-------GVLEPQGMVGIKFR  561 (758)
T ss_dssp             ECTTCEEETHHH-HTTCGGGSTTTEEEEEETTCEE-------ESSCHHHHHHHHSC
T ss_pred             EecCCccchHHH-HHhCcccCCCHHHHhcCCCCEE-------EccCHHHHHHHHhc
Confidence            98  88988776 4444    555  665555555       55554555444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	353
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	7e-27
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	1e-16
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	1e-13
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	3e-13
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	4e-13
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	1e-09
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	1e-08
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	7e-08
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	6e-07
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	1e-06
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	2e-06
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	1e-05
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	4e-05
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	2e-04
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	4e-04

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (261), Expect = 7e-27
 Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 3/158 (1%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEEC 108
           LNRP ALNAL   +  +LN+  + +E DP +G              +             
Sbjct: 22  LNRPKALNALCNGLIEELNQALETFEEDPAVGAI--VLTGGEKAFAAGADIKEMQNRTFQ 79

Query: 109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF 168
             +     S    +    KP +A +NG  +GGG  +++      A  K  F  PE L+G 
Sbjct: 80  DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGT 139

Query: 169 HPDAGASFYLSHLPGH-LGEFLALTGAKLNGAEMMACG 205
            P AG +  L+   G  L   + LTG +++  +    G
Sbjct: 140 IPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAG 177

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 76.3 bits (186), Expect = 1e-16
 Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 5/167 (2%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQG 103
            LN P   N L+  M   L +     E DP +      G G+AF AG D+  L      G
Sbjct: 13  FLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELG 72

Query: 104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
             EE      +L    + + T+ KP VA +NG  + GGAG+++     V   +      E
Sbjct: 73  A-EENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTE 131

Query: 164 TLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 210
             IGF     +   +  +     + L LTG  +   E  A GL    
Sbjct: 132 VKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.2 bits (165), Expect = 1e-13
 Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 11/147 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG-----------FGSGRAFCAGGDIVSLY 97
           LNRP   NA+N     +L + F+    D +                        DI+   
Sbjct: 19  LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78

Query: 98  HFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
                      +D          ++    KP +A ++G  +GGG  +      R      
Sbjct: 79  GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138

Query: 158 VFATPETLIGFHPDAGASFYLSHLPGH 184
            F   E  +G   D G    L  + G+
Sbjct: 139 FFQVKEVDVGLAADVGTLQRLPKVIGN 165

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (161), Expect = 3e-13
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 1/167 (0%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGS-GRAFCAGGDIVSLYHFMNQGKLEE 107
           +NR    N+L+ N+   L+K   A ++D  +                +      +    E
Sbjct: 21  INRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSE 80

Query: 108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIG 167
              F   + + I  +     P +A ++G+ +GGG  +++    RVA         ET + 
Sbjct: 81  VGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLA 140

Query: 168 FHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSE 214
             P  G +  L    G       +  A++   +         + + +
Sbjct: 141 IIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ 187

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (159), Expect = 4e-13
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF---GSGRAFCAGGDIVSLYHFMNQGK 104
           + NRP   NA+NT M  ++ +  KA   D +I     G+G  + +G D+ +       G 
Sbjct: 17  MFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGV 76

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
            E+ K+    L  F+       KP +A++NG  +G    +        A  +  F TP +
Sbjct: 77  EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFS 136

Query: 165 LIGFHPDAGASFYLSH 180
            +G  P+  +S+    
Sbjct: 137 HLGQSPEGCSSYTFPK 152

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 18/109 (16%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMN--- 101
            NRP   NA   +   +L ++       P++G     G+G +   GG             
Sbjct: 35  FNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRG 94

Query: 102 -----------QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMG 139
                         ++  +     +     L+    K  + ++NG   G
Sbjct: 95  RSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAG 143

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.1 bits (126), Expect = 1e-08
 Identities = 25/181 (13%), Positives = 43/181 (23%), Gaps = 13/181 (7%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGK 104
           L  P  LNAL       L +L +  + + ++       SGR F +G D   +        
Sbjct: 20  LINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDT 79

Query: 105 LEECK-------DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 157
            +          +F             H K  +  LNG  +G  A +        +    
Sbjct: 80  NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK 139

Query: 158 VFATPETLIGFHPD--AGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEK 215
           V+                          +      +         M   G  +       
Sbjct: 140 VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPS 199

Query: 216 L 216
            
Sbjct: 200 S 200

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 50.6 bits (119), Expect = 7e-08
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 5/141 (3%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMN-QG 103
           +  P   NAL+     ++       E D ++G     G+  AFCAG  +  +       G
Sbjct: 18  IKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAG 77

Query: 104 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 163
             +  +      +  I+ +    +P +A +NGV  GGG G+S+     +      F    
Sbjct: 78  VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137

Query: 164 TLIGFHPDAGASFYLSHLPGH 184
             IG   D   S+ L+ + G 
Sbjct: 138 HTIGIGNDTATSYSLARIVGM 158

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 48.2 bits (113), Expect = 6e-07
 Identities = 45/281 (16%), Positives = 84/281 (29%), Gaps = 32/281 (11%)

Query: 50  NRPSALNALNTNMGAKLNKLFKAWENDPNIG----FGSGRAFCAGGDIVSLYHFMNQGKL 105
            +  ++N  N     +L +   A + D ++           F  G DI            
Sbjct: 24  LKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDA 83

Query: 106 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL 165
           E                     P VA +NG+ +GGG  + +   FRV         PE  
Sbjct: 84  ELI-AGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVK 142

Query: 166 IGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGK 225
           +G +P  G +  L  L G                +     +A+      +  L    +  
Sbjct: 143 LGIYPGFGGTVRLPRLIGV---------------DNAVEWIASGKENRAEDALKVSAVDA 187

Query: 226 LVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDP 285
           +VT D  +  A L+     +  + +    R   ++K                E  +  + 
Sbjct: 188 VVTAD-KLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAI----------EQMMAFET 236

Query: 286 WCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYR 326
             G          P  ++  +++I++      D+ L  E  
Sbjct: 237 AKGFVAGQAGPNYPAPVEA-IKTIQKAANFGRDKALEVEAA 276

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 35/166 (21%), Positives = 56/166 (33%), Gaps = 3/166 (1%)

Query: 48  ILNRPSALNALNTNMGAKLNKLFKAWENDPN---IGFGSGRAFCAGGDIVSLYHFMNQGK 104
           +  R +  NALNT +  ++     +   D +   +   +G  FC G D       +   +
Sbjct: 17  LSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDR 76

Query: 105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET 164
                +   T+ +F+       KP V  +NG  +G GA +        A  K  F TP T
Sbjct: 77  NTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYT 136

Query: 165 LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEMMACGLATHY 210
             G  PD  +S     + G       L   +   A           
Sbjct: 137 TFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQ 182

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 27/182 (14%), Positives = 50/182 (27%), Gaps = 1/182 (0%)

Query: 36  VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVS 95
           + +E      +  ++         +    +L   F     D                   
Sbjct: 15  IRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEI 74

Query: 96  LYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG 155
            +   N G   +  +        +  L +   P +A +NG          +      A  
Sbjct: 75  DFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTNAPEIPVMSDIVLAAES 134

Query: 156 KTVFATPETLIGFHPDAGASFYLSHLPG-HLGEFLALTGAKLNGAEMMACGLATHYSVSE 214
            T    P    G  P  GA     H+ G + G +  LTG +L+    +  G        +
Sbjct: 135 ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQ 194

Query: 215 KL 216
           +L
Sbjct: 195 EL 196

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 4/64 (6%), Positives = 12/64 (18%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEEC 108
           L+ P+  N  +  +   +         D ++                      +      
Sbjct: 15  LDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSE 74

Query: 109 KDFF 112
               
Sbjct: 75  DIEE 78

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 35 QVLVEGKANSRMAI--LNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
          +VLVE  A + +A+     P  +N+L+     +L    +  END + 
Sbjct: 3  RVLVEPDAGAGVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSF 48

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 17/136 (12%), Positives = 36/136 (26%)

Query: 49  LNRPSALNALNTNMGAKLNKLFKAWENDPNIGFGSGRAFCAGGDIVSLYHFMNQGKLEEC 108
            N    LNAL+      L +                    +                 + 
Sbjct: 19  FNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDP 78

Query: 109 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF 168
             +   L     ++    KP ++++ G   GG   + +     +A   + F+     +G 
Sbjct: 79  LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGV 138

Query: 169 HPDAGASFYLSHLPGH 184
             +      L+   G 
Sbjct: 139 PYNLVGIHNLTRDAGF 154

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 48 ILNRPSALNALNTNMGAKLNKLFKAWENDPNI 79
          I  R   LNA+   +   L ++++  E    +
Sbjct: 23 ITFRGEKLNAMPPALHRGLARVWRDLEAVEGV 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	353
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	98.15
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	98.09
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	98.02
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	97.83
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.71
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.58
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.27
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	97.06
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.0
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.91
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	96.64
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.5
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.47
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.38
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	96.01
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	95.76
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	95.1
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	93.67
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	89.69

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-54  Score=391.78  Aligned_cols=249  Identities=21%  Similarity=0.242  Sum_probs=229.5

Q ss_pred             CCceEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           33 CNQVLVEGKANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~ln-rp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      ++.|.++++++|++|+|| ||+++|++|.+|+.+|.++++.++.|+. ++    |.|++||+|+|++++...........
T Consensus         1 y~~i~v~~~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d~~-~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   79 (258)
T d2fw2a1           1 YRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTA   79 (258)
T ss_dssp             CCSEEEEEETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHCHHHH
T ss_pred             CceEEEEEECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcCCC-EEEEEecCccccccccccchhhhcccccccch
Confidence            467999999999999997 7999999999999999999999988754 55    99999999999999977554444555


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      ...+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +
T Consensus        80 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a  159 (258)
T d2fw2a1          80 SLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASA  159 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHH
T ss_pred             hhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcccc
Confidence            667788889999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcC
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD  266 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (353)
                      .+|++||++++|+||+++||||+|+|++++.+.+.                                             
T Consensus       160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------  194 (258)
T d2fw2a1         160 NEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVM---------------------------------------------  194 (258)
T ss_dssp             HHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHH---------------------------------------------
T ss_pred             chhhccCcccccccccccccccccccccccccccc---------------------------------------------
Confidence            99999999999999999999999999999875444                                             


Q ss_pred             CHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 018632          267 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF  346 (353)
Q Consensus       267 ~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~a  346 (353)
                                            +++++|++.||.+++.+|++++.....+++++++.|.+.+..++.   ++|++|||++
T Consensus       195 ----------------------~~a~~i~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~Egi~a  249 (258)
T d2fw2a1         195 ----------------------IQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWS---SAQGIESMLK  249 (258)
T ss_dssp             ----------------------HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SHHHHHHHHH
T ss_pred             ----------------------hhhhhhhhhhHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence                                  348999999999999999999999888999999999999999998   9999999999


Q ss_pred             eeccCC
Q 018632          347 QILNKH  352 (353)
Q Consensus       347 fl~~~~  352 (353)
                      |+|||+
T Consensus       250 f~EKR~  255 (258)
T d2fw2a1         250 YVENKI  255 (258)
T ss_dssp             HHHSSC
T ss_pred             HhCCCC
Confidence            999986

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.1e-54  Score=392.06  Aligned_cols=245  Identities=24%  Similarity=0.323  Sum_probs=223.6

Q ss_pred             CCCceEEEEe---CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCC
Q 018632           32 LCNQVLVEGK---ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK  104 (353)
Q Consensus        32 ~~~~v~~~~~---~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~  104 (353)
                      .++.|.++++   ++|++||||||+++|+||.+|+.+|.++|+.++.|+++++    |.|++||+|+|++++...    .
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~----~   77 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR----T   77 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTC----C
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhcc----c
Confidence            4678999987   4899999999999999999999999999999999999988    899999999999987642    1


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChH
Q 018632          105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       105 ~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      .  ...+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        78 ~--~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~  155 (260)
T d1mj3a_          78 F--QDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGK  155 (260)
T ss_dssp             H--HHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCH
T ss_pred             h--hhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCH
Confidence            1  22344556677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . +++|+++|++++|+||+++|||++|++++++.....                                          
T Consensus       156 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~------------------------------------------  193 (260)
T d1mj3a_         156 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAI------------------------------------------  193 (260)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHH------------------------------------------
T ss_pred             HHHHHHHHcCcccCchhhccCCCceeeecccccccccc------------------------------------------
Confidence            8 999999999999999999999999999999875443                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                                               +++.++++.+|.|++.+|++++.....+++++++.|.+.+...+.   ++|++||
T Consensus       194 -------------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~---s~d~~eg  245 (260)
T d1mj3a_         194 -------------------------QCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFA---TDDRREG  245 (260)
T ss_dssp             -------------------------HHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGG---SHHHHHH
T ss_pred             -------------------------cccccccchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                     348999999999999999999999999999999999999999998   9999999


Q ss_pred             hhheeccCC
Q 018632          344 SNFQILNKH  352 (353)
Q Consensus       344 i~afl~~~~  352 (353)
                      ++||++||+
T Consensus       246 i~aFleKR~  254 (260)
T d1mj3a_         246 MSAFVEKRK  254 (260)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHhCCCC
Confidence            999999986

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=1e-52  Score=386.39  Aligned_cols=251  Identities=20%  Similarity=0.235  Sum_probs=227.7

Q ss_pred             CCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhh-cCChH
Q 018632           32 LCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMN-QGKLE  106 (353)
Q Consensus        32 ~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~-~~~~~  106 (353)
                      |++.|.++++++|++||||||++.|+||.+|+.+|.++++.+++|+++++    |.|+.||+|+|++++..... ....+
T Consensus         1 my~~i~~~i~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T d1nzya_           1 MYEAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             CCCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence            68899999999999999999999999999999999999999999999987    88899999999998753210 11122


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                      ....+...++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||.++|++|++|+++++++++|.. 
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~  160 (269)
T d1nzya_          81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRR  160 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhh
Confidence            3334455677899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      ++++++||+.++|+||+++||||+|+|++++.+.+.                                            
T Consensus       161 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  196 (269)
T d1nzya_         161 AMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAW--------------------------------------------  196 (269)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHH--------------------------------------------
T ss_pred             hhhccccccccchhHHHHcCCccccccccccccchh--------------------------------------------
Confidence            999999999999999999999999999888765443                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                                             +++++|++.||.+++.+|+.+++....+++++++.|.+.+...+.   ++|++|||+
T Consensus       197 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~e~v~  250 (269)
T d1nzya_         197 -----------------------KVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVT---HPHFMPCLT  250 (269)
T ss_dssp             -----------------------HHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH---STTHHHHHH
T ss_pred             -----------------------hhhhhhhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc---CHHHHHHHH
Confidence                                   348999999999999999999999999999999999999999998   999999999


Q ss_pred             heeccCC
Q 018632          346 FQILNKH  352 (353)
Q Consensus       346 afl~~~~  352 (353)
                      +|++||+
T Consensus       251 aflekrk  257 (269)
T d1nzya_         251 RFLDGHR  257 (269)
T ss_dssp             HHHTTCC
T ss_pred             HHHCCCC
Confidence            9999986

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.7e-52  Score=382.22  Aligned_cols=247  Identities=16%  Similarity=0.157  Sum_probs=224.5

Q ss_pred             CCCceEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChH
Q 018632           32 LCNQVLVEG-KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        32 ~~~~v~~~~-~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      .++.+.++. ++||++|+| ||++.|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++....  .+.+
T Consensus         7 ~~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~--~~~~   83 (263)
T d1wz8a1           7 RYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMR--ASHE   83 (263)
T ss_dssp             HCTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHH--HCHH
T ss_pred             CCCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhc--cccc
Confidence            356788886 678999999 7889999999999999999999999999988    8899999999999987642  2455


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                      ....+.....+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. 
T Consensus        84 ~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~  163 (263)
T d1wz8a1          84 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAK  163 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHH
T ss_pred             ccccchhhhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            5667778888999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      +.+|+++|++++|+||+++||||+|+|++++.+.+.                                            
T Consensus       164 a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------  199 (263)
T d1wz8a1         164 AKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKAL--------------------------------------------  199 (263)
T ss_dssp             HHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHH--------------------------------------------
T ss_pred             hhhhcccccccchhHHHhcCCcccccchhhhhHHHH--------------------------------------------
Confidence            999999999999999999999999999988875443                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                                             +++++|+++||.+++.+|++++......+ +.++.|...+...+.   ++|++||++
T Consensus       200 -----------------------~~a~~la~~~~~al~~~K~~l~~~~~~~~-~~~~~e~~~~~~~~~---s~d~~Egi~  252 (263)
T d1wz8a1         200 -----------------------EVAERLAQGPKEALHHTKHALNHWYRSFL-PHFELSLALEFLGFS---GKELEEGLK  252 (263)
T ss_dssp             -----------------------HHHHHHHTSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHGGG---SHHHHHHHH
T ss_pred             -----------------------HHHHHhhccHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHcc---CHHHHHHHH
Confidence                                   45899999999999999999998877665 458889999888887   999999999


Q ss_pred             heeccCC
Q 018632          346 FQILNKH  352 (353)
Q Consensus       346 afl~~~~  352 (353)
                      ||++||+
T Consensus       253 Af~eKR~  259 (263)
T d1wz8a1         253 ALKEKRP  259 (263)
T ss_dssp             HHHTTSC
T ss_pred             HHhCCCC
Confidence            9999997

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.2e-51  Score=375.71  Aligned_cols=244  Identities=24%  Similarity=0.257  Sum_probs=222.5

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEECKDF  111 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~  111 (353)
                      |.++ +|+|++||||||+++|+||.+|+.+|.++++.++.|+++++    |.|+.||+|+|++.+.... ..+......+
T Consensus         2 v~ie-~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~-~~~~~~~~~~   79 (253)
T d1uiya_           2 VQVE-KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVT-ELGAEENYRH   79 (253)
T ss_dssp             EEEE-CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHT-TSCHHHHHHH
T ss_pred             EEEe-eCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhcc-ccCcccccch
Confidence            4454 37799999999999999999999999999999999999988    9999999999999887642 3345556667


Q ss_pred             HHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHH
Q 018632          112 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA  190 (353)
Q Consensus       112 ~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~  190 (353)
                      ......++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|. |++++|++++|.. |++|+
T Consensus        80 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~  158 (253)
T d1uiya_          80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLL  158 (253)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHH
T ss_pred             hhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHHHHHHHh
Confidence            777888999999999999999999999999999999999999999999999999998875 5678899999999 99999


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHH
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE  270 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (353)
                      +||++++|+||+++||||+|+|++++.+.+.                                                 
T Consensus       159 l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~-------------------------------------------------  189 (253)
T d1uiya_         159 LTGRLVEAREAKALGLVNRIAPPGKALEEAK-------------------------------------------------  189 (253)
T ss_dssp             HHCCEEEHHHHHHHTSCSEEECTTCHHHHHH-------------------------------------------------
T ss_pred             hcCcCCCHHHHHHhCCCcccccccccchhHH-------------------------------------------------
Confidence            9999999999999999999999999875443                                                 


Q ss_pred             HHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 018632          271 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILN  350 (353)
Q Consensus       271 i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~  350 (353)
                                        ++++++.+.+|.+++.+|++++.....+++++++.|...+...+.   ++|++||++||++|
T Consensus       190 ------------------~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~---s~d~~egi~af~eK  248 (253)
T d1uiya_         190 ------------------ALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRE---TGDLAEGIRAFFEK  248 (253)
T ss_dssp             ------------------HHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGG---CHHHHHHHHHHHTT
T ss_pred             ------------------HHHHhhcccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHhCC
Confidence                              448999999999999999999999999999999999999999888   99999999999999


Q ss_pred             CC
Q 018632          351 KH  352 (353)
Q Consensus       351 ~~  352 (353)
                      |+
T Consensus       249 R~  250 (253)
T d1uiya_         249 RP  250 (253)
T ss_dssp             SC
T ss_pred             CC
Confidence            87

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.8e-51  Score=376.95  Aligned_cols=250  Identities=19%  Similarity=0.245  Sum_probs=222.5

Q ss_pred             CCceEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCC---
Q 018632           33 CNQVLVE-GKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK---  104 (353)
Q Consensus        33 ~~~v~~~-~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~---  104 (353)
                      ++.+.++ .+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++    |.|++||+|+|+.++........   
T Consensus         2 y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~   81 (275)
T d1dcia_           2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             CceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhccccccccc
Confidence            5667775 578999999999999999999999999999999999999988    88999999999999876543321   


Q ss_pred             h----HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhh
Q 018632          105 L----EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH  180 (353)
Q Consensus       105 ~----~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r  180 (353)
                      .    .....+...+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~  161 (275)
T d1dcia_          82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPK  161 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGG
T ss_pred             ccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccccc
Confidence            1    123344566778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChHH--HHHHHhcCCCCCHHHHHHcCccceecCCCCh-hHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHH
Q 018632          181 LPGHL--GEFLALTGAKLNGAEMMACGLATHYSVSEKL-PLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID  257 (353)
Q Consensus       181 ~~g~~--a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (353)
                      ++|..  +.+++++|+.++|+||+++||||+|+|+++. .....                                    
T Consensus       162 ~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~------------------------------------  205 (275)
T d1dcia_         162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAF------------------------------------  205 (275)
T ss_dssp             TCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHH------------------------------------
T ss_pred             ccccccccccccccccccchhhhccCCCceeeeehhhhhhhccc------------------------------------
Confidence            99954  5799999999999999999999999987653 32222                                    


Q ss_pred             HHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCC
Q 018632          258 IVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLIS  337 (353)
Q Consensus       258 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~  337 (353)
                                                     +++.+|++++|.|++.+|+.++.+...+++++++.|.+.+..++.   +
T Consensus       206 -------------------------------~~a~~i~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~  251 (275)
T d1dcia_         206 -------------------------------ALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQ---T  251 (275)
T ss_dssp             -------------------------------HHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS---S
T ss_pred             -------------------------------ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---C
Confidence                                           458999999999999999999999999999999999999999987   9


Q ss_pred             CChhhhhhheeccCC
Q 018632          338 GDFYEVSNFQILNKH  352 (353)
Q Consensus       338 ~d~~egi~afl~~~~  352 (353)
                      +|++|||+||+|||+
T Consensus       252 ~d~~Egi~AfleKR~  266 (275)
T d1dcia_         252 QDIIKSVQAAMEKKD  266 (275)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999999987

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-52  Score=380.13  Aligned_cols=242  Identities=21%  Similarity=0.236  Sum_probs=222.7

Q ss_pred             eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHHHHHHHHHH
Q 018632           41 KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  115 (353)
Q Consensus        41 ~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~  115 (353)
                      ++||++||||||+++|+||.+|+.+|.++++.++.|++|++    |.| ++||+|.|++.+...    .......+...+
T Consensus        13 ~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~----~~~~~~~~~~~~   88 (266)
T d1hzda_          13 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM----SSSEVGPFVSKI   88 (266)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS----CHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccc----cchhhhhhhhHH
Confidence            46799999999999999999999999999999999999987    776 689999999988653    445566777888


Q ss_pred             HHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHHhcCC
Q 018632          116 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA  194 (353)
Q Consensus       116 ~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~ltG~  194 (353)
                      ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++++++||+
T Consensus        89 ~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~  168 (266)
T d1hzda_          89 RAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR  168 (266)
T ss_dssp             HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             CCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHHHHHHH
Q 018632          195 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS  274 (353)
Q Consensus       195 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  274 (353)
                      .++|+||+++||||+|||++++.+...                                                     
T Consensus       169 ~~~a~eA~~~Glv~~vv~~~~l~~~~~-----------------------------------------------------  195 (266)
T d1hzda_         169 VLDGKEAKAVGLISHVLEQNQEGDAAY-----------------------------------------------------  195 (266)
T ss_dssp             EEEHHHHHHHTSCSEEECCCTTSCHHH-----------------------------------------------------
T ss_pred             ccCHHHhhcccccccccChhhhhhHHH-----------------------------------------------------
Confidence            999999999999999999988764322                                                     


Q ss_pred             HHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 018632          275 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH  352 (353)
Q Consensus       275 l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~afl~~~~  352 (353)
                                +++.+++++|++.||.|++.+|++++.+...++.++++.|...+..++.   ++|++||++||++||+
T Consensus       196 ----------~~a~~~a~~i~~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~---s~d~~Eg~~AF~eKR~  260 (266)
T d1hzda_         196 ----------RKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIP---TKDRLEGLLAFKEKRP  260 (266)
T ss_dssp             ----------HHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTT---CHHHHHHHHHHTTTSC
T ss_pred             ----------HHHHHHHHhcccCChHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHhCCCC
Confidence                      2344668999999999999999999999999999999999999999887   9999999999999986

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-50  Score=367.85  Aligned_cols=239  Identities=21%  Similarity=0.257  Sum_probs=213.5

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc---CCCCCcccCcchhhHHHhhhcCChHHHH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECK  109 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~  109 (353)
                      ++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+.+.+   |.|++||+|+|++++.............
T Consensus         2 ~~~i~~~~~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   81 (245)
T d2f6qa1           2 FETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAK   81 (245)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCSEEEEEESTTCSBCCBCC----CCCTTHHHHHHH
T ss_pred             cceEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCceEEeecCCCccccCCccchhhhcccccccccccc
Confidence            4679999999999999999999999999999999999999999988866   8899999999999987642222233344


Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHH
Q 018632          110 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF  188 (353)
Q Consensus       110 ~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~  188 (353)
                      .+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++
T Consensus        82 ~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~  161 (245)
T d2f6qa1          82 NNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATE  161 (245)
T ss_dssp             HHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred             hhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhhh
Confidence            5556677899999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCH
Q 018632          189 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV  268 (353)
Q Consensus       189 l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (353)
                      ++++|+.++|+||+++||||+|+|++++++.+..                                              
T Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~----------------------------------------------  195 (245)
T d2f6qa1         162 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWT----------------------------------------------  195 (245)
T ss_dssp             HHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHH----------------------------------------------
T ss_pred             hcccccccccccccccccccccCCcchHHHHHHH----------------------------------------------
Confidence            9999999999999999999999999998765543                                              


Q ss_pred             HHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChh
Q 018632          269 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFY  341 (353)
Q Consensus       269 ~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~  341 (353)
                                           ++++|++.||.|++.+|++++......+++.++.|...+..++.   ++|++
T Consensus       196 ---------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~  244 (245)
T d2f6qa1         196 ---------------------RLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWL---SDECT  244 (245)
T ss_dssp             ---------------------HHHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHT---SHHHH
T ss_pred             ---------------------HHHHHHcCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhc---CcccC
Confidence                                 48999999999999999999999888999999999999999998   88875

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-51  Score=376.90  Aligned_cols=244  Identities=18%  Similarity=0.192  Sum_probs=210.5

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CC--CCCcccCcchhhHHHhhhcCChH
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GS--GRAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~--g~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      ++.|.++.+|+|++||||||+++|+||.+|+.+|.++++.++. +++++    |.  |++||+|+|++++.....  +  
T Consensus         3 ~~~i~~~~~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~--~--   77 (261)
T d1ef8a_           3 YQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHELPSGGR--D--   77 (261)
T ss_dssp             CSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTTC-------C--
T ss_pred             CCEEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccccccCCc--c--
Confidence            4789999999999999999999999999999999999999975 45655    54  589999999998865311  1  


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-  185 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-  185 (353)
                       ...+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. 
T Consensus        78 -~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~  156 (261)
T d1ef8a_          78 -PLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI  156 (261)
T ss_dssp             -TTCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred             -ccccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccc
Confidence             122345567788999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          186 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       186 a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      +++++++|+.++|+||+++||||+|+|++++.+.+.                                            
T Consensus       157 a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~--------------------------------------------  192 (261)
T d1ef8a_         157 VKELIFTASPITAQRALAVGILNHVVEVEELEDFTL--------------------------------------------  192 (261)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHH--------------------------------------------
T ss_pred             cccccccCceEcHHHHHHcCCcceeeechhhhhhhH--------------------------------------------
Confidence            999999999999999999999999999888764433                                            


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTF--DECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~--~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                                             +++++|++.+|.|++.+|++++...+..+  ...++.+...+..++.   ++|++||
T Consensus       193 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---s~D~~Eg  246 (261)
T d1ef8a_         193 -----------------------QMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYD---SEDYQEG  246 (261)
T ss_dssp             -----------------------HHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred             -----------------------HHHHHHHhcCcHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhC---CHHHHHH
Confidence                                   45899999999999999999997765543  4555555666666776   9999999


Q ss_pred             hhheeccCC
Q 018632          344 SNFQILNKH  352 (353)
Q Consensus       344 i~afl~~~~  352 (353)
                      |+||+|||+
T Consensus       247 i~AfleKR~  255 (261)
T d1ef8a_         247 MNAFLEKRK  255 (261)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHhCCCC
Confidence            999999987

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=1.2e-48  Score=365.82  Aligned_cols=285  Identities=14%  Similarity=0.135  Sum_probs=226.5

Q ss_pred             CceEEEE-eCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCChHH
Q 018632           34 NQVLVEG-KANSRMAILN-RPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGKLEE  107 (353)
Q Consensus        34 ~~v~~~~-~~~v~~I~ln-rp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~~~~  107 (353)
                      +.+.++. +++|++|+|| ||++.|+||.+|+.+|.++++.++.|+++++    |.|++||+|+|++++...... ....
T Consensus         6 ~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~~   84 (310)
T d1wdka4           6 KAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKL-PDAE   84 (310)
T ss_dssp             SSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTS-CHHH
T ss_pred             ceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccc-cchh
Confidence            4677776 6889999998 8999999999999999999999999999887    889999999999998765322 2333


Q ss_pred             HHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-H
Q 018632          108 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G  186 (353)
Q Consensus       108 ~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a  186 (353)
                      .......+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus        85 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~a  164 (310)
T d1wdka4          85 LIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNA  164 (310)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             hhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhhh
Confidence            344455677899999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             HHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHH-HhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCc
Q 018632          187 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL-GKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL  265 (353)
Q Consensus       187 ~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
                      .+++++|+.++|+||+++||||+|+|++++.+.+..+ .+++..+..... ..+.........                 
T Consensus       165 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~-~~~~~~~~~~~~-----------------  226 (310)
T d1wdka4         165 VEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKA-KRQPKLEKLKLN-----------------  226 (310)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHH-HHGGGGSCCSCC-----------------
T ss_pred             hhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhh-hhhhhccccccc-----------------
Confidence            9999999999999999999999999999998877666 444444333221 111111111111                 


Q ss_pred             CCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 018632          266 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN  345 (353)
Q Consensus       266 ~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~egi~  345 (353)
                       ..+..+..-         .+...+.++...+. .|.....+.+..+...+++++++.|.+.|.+++.   +++.++++.
T Consensus       227 -~~~~~~~~~---------~~~~~~~~~~~~~~-pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~---t~~a~~~i~  292 (310)
T d1wdka4         227 -AIEQMMAFE---------TAKGFVAGQAGPNY-PAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAK---TSASNCLIG  292 (310)
T ss_dssp             -HHHHHHHHH---------HHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT---SHHHHHHHH
T ss_pred             -chhhhHHHH---------HhhhhhhhhccCCC-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence             111111000         01112233333444 4555578889999999999999999999999998   999999999


Q ss_pred             heeccC
Q 018632          346 FQILNK  351 (353)
Q Consensus       346 afl~~~  351 (353)
                      +|+++|
T Consensus       293 aF~~kr  298 (310)
T d1wdka4         293 LFLNDQ  298 (310)
T ss_dssp             HHHHHH
T ss_pred             HHHhhh
Confidence            999876

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.4e-48  Score=363.55  Aligned_cols=251  Identities=16%  Similarity=0.182  Sum_probs=203.5

Q ss_pred             CCCCceEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CC-------CCCcccCcchhhHH
Q 018632           31 DLCNQVLVEG--KANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GS-------GRAFCAGGDIVSLY   97 (353)
Q Consensus        31 ~~~~~v~~~~--~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~-------g~~F~aG~Dl~~~~   97 (353)
                      +....|++++  +++|++||||||+++|+||.+|+.+|.++++.++.|++|++    |.       |+.||+|.|++...
T Consensus        15 ~~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~   94 (297)
T d1q52a_          15 DDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRG   94 (297)
T ss_dssp             TTCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC------
T ss_pred             CCCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhc
Confidence            3345577875  58999999999999999999999999999999999999998    54       56788888887654


Q ss_pred             Hhhhc-------CChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCc-eEEeccCCCcccc
Q 018632           98 HFMNQ-------GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFH  169 (353)
Q Consensus        98 ~~~~~-------~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~~  169 (353)
                      .....       ...+........+..+...|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~  174 (297)
T d1q52a_          95 RSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSF  174 (297)
T ss_dssp             -----------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCC
T ss_pred             ccccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccc
Confidence            32111       111222333445667888999999999999999999999999999999999875 5799999999999


Q ss_pred             cCccHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCC
Q 018632          170 PDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPD  248 (353)
Q Consensus       170 p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  248 (353)
                      |++|++++|++++|.. ++++++||+.++|+||+++||||+|+|++++.+...                           
T Consensus       175 p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~---------------------------  227 (297)
T d1q52a_         175 DGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGL---------------------------  227 (297)
T ss_dssp             CCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHH---------------------------
T ss_pred             cccccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHH---------------------------
Confidence            9999999999999999 999999999999999999999999999998875444                           


Q ss_pred             hhhHHHHHHHHHHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 018632          249 KNSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMS  328 (353)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~  328 (353)
                                                              +++++|++.+|.+++.+|++++... ..+.+....|.+.+
T Consensus       228 ----------------------------------------~~a~~l~~~~~~a~~~~K~~~~~~~-~~~~~~~~~~~~~~  266 (297)
T d1q52a_         228 ----------------------------------------QWAAEINAKSPQAQRMLKFAFNLLD-DGLVGQQLFAGEAT  266 (297)
T ss_dssp             ----------------------------------------HHHHHHHTSCHHHHHHHHHHHHHTT-THHHHHHHHHHHHH
T ss_pred             ----------------------------------------HHhhhhccCCHHHHHHHHHHHHHhh-cChHHHHHHHHHHH
Confidence                                                    3489999999999999999998754 45555556677777


Q ss_pred             HHhhhcCCCCChhhhhhheeccCC
Q 018632          329 LQGVSRLISGDFYEVSNFQILNKH  352 (353)
Q Consensus       329 ~~~~~~~~~~d~~egi~afl~~~~  352 (353)
                      ...+.   ++|++||++||++||+
T Consensus       267 ~~~~~---s~d~~Egv~AF~eKR~  287 (297)
T d1q52a_         267 RLAYM---TDEAVEGRDAFLQKRP  287 (297)
T ss_dssp             HHHHT---SHHHHHHHHHHHTTSC
T ss_pred             HHHhc---CHHHHHHHHHHhCCCC
Confidence            77776   9999999999999986

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=1.6e-47  Score=343.57  Aligned_cols=221  Identities=16%  Similarity=0.235  Sum_probs=197.8

Q ss_pred             eEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChHHHHH
Q 018632           36 VLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLEECKD  110 (353)
Q Consensus        36 v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~  110 (353)
                      +..+.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++    |.| ++||+|.|++++...   ...+....
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~---~~~~~~~~   78 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQL---SRSEDIEE   78 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC----CHHHHHH
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhccccccccc---cccccccc
Confidence            4456789999999999999999999999999999999999999886    665 899999999998763   23455667


Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHH
Q 018632          111 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL  189 (353)
Q Consensus       111 ~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l  189 (353)
                      +...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+ .+|++++|.. ++++
T Consensus        79 ~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l  157 (230)
T d2a7ka1          79 WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEI  157 (230)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHH
T ss_pred             chhhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-ccccccccccccccc
Confidence            7888889999999999999999999999999999999999999999999999999999998765 5799999999 9999


Q ss_pred             HhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhcCcCCHH
Q 018632          190 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE  269 (353)
Q Consensus       190 ~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (353)
                      +++|+.++|+||+++||||+|+|++++.+.+.                                                
T Consensus       158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------  189 (230)
T d2a7ka1         158 IYQCQSLDAPRCVDYRLVNQVVESSALLDAAI------------------------------------------------  189 (230)
T ss_dssp             HHHCCCBCHHHHHHHTCCSEEECHHHHHHHHH------------------------------------------------
T ss_pred             ccccccchHHHHHHhhhcccCCChHHHHHHHH------------------------------------------------
Confidence            99999999999999999999999887765443                                                


Q ss_pred             HHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 018632          270 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRM  327 (353)
Q Consensus       270 ~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~  327 (353)
                                         +++++|++.||.+++.+|+++++.....++++++.|..+
T Consensus       190 -------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~a~  228 (230)
T d2a7ka1         190 -------------------TQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKAV  228 (230)
T ss_dssp             -------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHcCCHHHHHHHHHHHHHHHhccHHHHHHHHHHh
Confidence                               348999999999999999999998888888888877543

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=9.7e-48  Score=349.05  Aligned_cols=237  Identities=16%  Similarity=0.176  Sum_probs=214.4

Q ss_pred             CceEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCC-CCcccCcchhhHHHhhhcCChH
Q 018632           34 NQVLVEGK--ANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSG-RAFCAGGDIVSLYHFMNQGKLE  106 (353)
Q Consensus        34 ~~v~~~~~--~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g-~~F~aG~Dl~~~~~~~~~~~~~  106 (353)
                      +.|.++.+  +||++||||||+ .|+||.+|+.+|.++++.++.|+++++    |.| ++||+|+|++++..    ....
T Consensus         2 ~~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~----~~~~   76 (249)
T d1sg4a1           2 QRVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG----RSPA   76 (249)
T ss_dssp             CSEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSS----CCHH
T ss_pred             CcEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccc----cccc
Confidence            34556654  679999999996 699999999999999999999999987    777 57999999998754    3556


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEE--eccCCCcccccCccHHHHHhhcChH
Q 018632          107 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF--ATPETLIGFHPDAGASFYLSHLPGH  184 (353)
Q Consensus       107 ~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f--~~pe~~~G~~p~~g~~~~l~r~~g~  184 (353)
                      ....+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|  ++||+++|++|++|++++|++++|.
T Consensus        77 ~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~  156 (249)
T d1sg4a1          77 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGH  156 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCH
T ss_pred             cccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeecccccccccccccccccccccccccccccccc
Confidence            67788888999999999999999999999999999999999999999999876  7899999999999999999999999


Q ss_pred             H-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHhc
Q 018632          185 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF  263 (353)
Q Consensus       185 ~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (353)
                      . +++++++|++++|++|+++||||+|+|++++++.+.                                          
T Consensus       157 ~~a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~------------------------------------------  194 (249)
T d1sg4a1         157 RAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTAL------------------------------------------  194 (249)
T ss_dssp             HHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHH------------------------------------------
T ss_pred             ccccccccccccccHHHHHhhccccccCChHHHHHHHH------------------------------------------
Confidence            9 999999999999999999999999999988875444                                          


Q ss_pred             CcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 018632          264 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV  343 (353)
Q Consensus       264 ~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg  343 (353)
                                               +++++|++.||.+++.+|++++......+.+.++.|.+.+...+.   +++++++
T Consensus       195 -------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~---~e~~~~~  246 (249)
T d1sg4a1         195 -------------------------SAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFIS---KDSIQKS  246 (249)
T ss_dssp             -------------------------HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT---SHHHHHH
T ss_pred             -------------------------HHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC---CHHHHHh
Confidence                                     348999999999999999999999888999999999999999887   8889888


Q ss_pred             hh
Q 018632          344 SN  345 (353)
Q Consensus       344 i~  345 (353)
                      |+
T Consensus       247 le  248 (249)
T d1sg4a1         247 LQ  248 (249)
T ss_dssp             HT
T ss_pred             cC
Confidence            75

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7e-47  Score=346.71  Aligned_cols=240  Identities=15%  Similarity=0.086  Sum_probs=204.8

Q ss_pred             CCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCC----
Q 018632           33 CNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK----  104 (353)
Q Consensus        33 ~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~----  104 (353)
                      .+.|.++.+|+|++||||||+++|++|.+|+.+|.++++.++.|++|++    |.|++||+|+|++++........    
T Consensus         4 ~e~i~~~~~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~   83 (266)
T d1pjha_           4 NEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYP   83 (266)
T ss_dssp             BTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCS
T ss_pred             CCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhcccccccccc
Confidence            4679999999999999999999999999999999999999999999988    99999999999999875422111    


Q ss_pred             ---hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeC-ceEEeccCCCcccccCccHHHHHhh
Q 018632          105 ---LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSH  180 (353)
Q Consensus       105 ---~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~-~a~f~~pe~~~G~~p~~g~~~~l~r  180 (353)
                         ......+......++..+.++||||||+|||+|+|||++|+++||+|||++ .++|++||+++|++|++|++++|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~r  163 (266)
T d1pjha_          84 SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPL  163 (266)
T ss_dssp             SHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhcccccccccccccccccccccccccc
Confidence               223445667778899999999999999999999999999999999999965 6899999999999999999999999


Q ss_pred             cChHH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHH
Q 018632          181 LPGHL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIV  259 (353)
Q Consensus       181 ~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (353)
                      ++|.. +.+|++||+.++|+||+++||||+|++++++......-                                    
T Consensus       164 ~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~------------------------------------  207 (266)
T d1pjha_         164 KFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNA------------------------------------  207 (266)
T ss_dssp             HHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHH------------------------------------
T ss_pred             ccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhHHHHHH------------------------------------
Confidence            99999 99999999999999999999999999887664211100                                    


Q ss_pred             HHhcCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHhhh
Q 018632          260 DKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS  333 (353)
Q Consensus       260 ~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~  333 (353)
                                               ..++++++++...++.++..+|++++......+..++..|.+...+.+.
T Consensus       208 -------------------------~~~~~l~~~~~~~~~~s~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~f~  256 (266)
T d1pjha_         208 -------------------------KVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWV  256 (266)
T ss_dssp             -------------------------HHHHHHHHHHTTCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence                                     1123457888889999999999999988877888888888777666654

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=6e-46  Score=337.12  Aligned_cols=225  Identities=16%  Similarity=0.212  Sum_probs=201.0

Q ss_pred             CcCCCCceEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCccc----CCCCCcccCcchhhHHHhhhcCC
Q 018632           29 TDDLCNQVLVEGKANSRMAILNRPSALNALNTNMGAKLNKLFKAWENDPNIGF----GSGRAFCAGGDIVSLYHFMNQGK  104 (353)
Q Consensus        29 ~~~~~~~v~~~~~~~v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~v----g~g~~F~aG~Dl~~~~~~~~~~~  104 (353)
                      ....++.|.++++|+|++||||||++.|++|.+|+.+|.++++.++.|+++++    |.|++||+|+|++++..    .+
T Consensus         8 ~~~~y~~i~~~~~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~----~~   83 (249)
T d1szoa_           8 YSQKYENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL----GT   83 (249)
T ss_dssp             HTTSCTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCC----SS
T ss_pred             HhCCCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhc----cc
Confidence            34678889999999999999999999999999999999999999999999887    99999999999998743    35


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccccccccccCCeEEEeCceEEe-ccCCCcccccCccHHHHHhhcCh
Q 018632          105 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA-TPETLIGFHPDAGASFYLSHLPG  183 (353)
Q Consensus       105 ~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~-~pe~~~G~~p~~g~~~~l~r~~g  183 (353)
                      .+....+...++.++..+.++||||||+|||+|. ||++|+++||+||++++++|. +||+++|++|++|+++++++++|
T Consensus        84 ~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig  162 (249)
T d1szoa_          84 PHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLG  162 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHC
T ss_pred             ccchhhhhhhhhhhhhhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeeccccccccccccccccccccC
Confidence            6667777888889999999999999999999885 577899999999999999995 79999999999999999999999


Q ss_pred             HH-HHHHHhcCCCCCHHHHHHcCccceecCCCChhHHHHHHHhhhcCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHh
Q 018632          184 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC  262 (353)
Q Consensus       184 ~~-a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
                      .. +++|++||++++++||+++||||+|+|++++.+.+.                                         
T Consensus       163 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-----------------------------------------  201 (249)
T d1szoa_         163 SNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAW-----------------------------------------  201 (249)
T ss_dssp             HHHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHH-----------------------------------------
T ss_pred             ccceeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHH-----------------------------------------
Confidence            99 999999999999999999999999999887764433                                         


Q ss_pred             cCcCCHHHHHHHHHhccCCCCCchHHHHHHHHHhcCchHHHHHHHHHHhhhcCCHHHHHHHHH
Q 018632          263 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREY  325 (353)
Q Consensus       263 ~~~~~~~~i~~~l~~~~~~~~~~~a~~~a~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~  325 (353)
                                                +++++|++.||.|++.+|++++++....++..++.+.
T Consensus       202 --------------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~e~~l~~~l  238 (249)
T d1szoa_         202 --------------------------ELARGIAEKPLLARRYARKVLTRQLRRVMEADLSLGL  238 (249)
T ss_dssp             --------------------------HHHHHHHTSCHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             --------------------------HHHHHHHcCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence                                      4589999999999999999999876666666555443

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.15  E-value=6.3e-06  Score=68.45  Aligned_cols=132  Identities=16%  Similarity=0.115  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHHHHHhc---CCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 018632           58 LNTNMGAKLNKLFKAWEN---DPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  132 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~---d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaa  132 (353)
                      +|.++..++...|..++.   ++.+.+  -     |.|+|+....                   .++..+..++.||...
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~l~In-----S~GG~v~~gl-------------------~i~d~i~~~~~~v~t~   77 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDISLYIN-----SPGGSISAGM-------------------AIYDTMVLAPCDIATY   77 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHHHHH-------------------HHHHHHHHCSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEEEEee-----CCCCCHHHHH-------------------HHHHHHHhhccceeee
Confidence            788888888887655543   344544  1     3344443222                   3556667789999999


Q ss_pred             EccccccccccccccCC--eEEEeCceEEeccCCCcccccCccHHHH---------------HhhcChH--H-HHHHHhc
Q 018632          133 LNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFY---------------LSHLPGH--L-GEFLALT  192 (353)
Q Consensus       133 v~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~~~~---------------l~r~~g~--~-a~~l~lt  192 (353)
                      +.|.|.+.|..+++++|  .|++.++++|-+.+...|..-...-...               +.+..|.  . ..+++-.
T Consensus        78 ~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~~  157 (179)
T d2cbya1          78 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDR  157 (179)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred             hhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcC
Confidence            99999999999999999  8999999999998876555311110000               1111111  1 2344455


Q ss_pred             CCCCCHHHHHHcCccceecCC
Q 018632          193 GAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       193 G~~~~a~eA~~~Glv~~vv~~  213 (353)
                      ..-++|+||+++||||+|+.+
T Consensus       158 d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         158 DRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             TCEEEHHHHHHHTSCSEECSC
T ss_pred             CceecHHHHHHcCCCcEEecC
Confidence            566999999999999999865

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=5.1e-06  Score=69.28  Aligned_cols=131  Identities=17%  Similarity=0.092  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHHHHHhcC---CCccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWEND---PNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d---~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      ++.++...+...+..++.+   +.+.+   +.      |+|+...                   ..++..+..++.||+.
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~------GG~v~~g-------------------~~i~d~i~~~~~~v~t   79 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIYLYINSP------GGVITAG-------------------MSIYDTMQFIKPDVST   79 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC------CBCHHHH-------------------HHHHHHHHHSSSCEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceEEEEeCC------CccHHHH-------------------HHHHHHHHhCCCCEEE
Confidence            6788888888888777643   33544   33      3444322                   2355677789999999


Q ss_pred             EEccccccccccccccCC--eEEEeCceEEeccCCCcccccCccHHHH---------------HhhcCh--HH-HHHHHh
Q 018632          132 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFY---------------LSHLPG--HL-GEFLAL  191 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~~~~---------------l~r~~g--~~-a~~l~l  191 (353)
                      .+.|.|.+.|..+++++|  .|++.++++|-+.+...|..-...-...               +....|  .. ..+++-
T Consensus        80 v~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~~~  159 (183)
T d1yg6a1          80 ICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTE  159 (183)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTS
T ss_pred             EEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhc
Confidence            999999999999998888  7999999999998887665311110000               001111  11 233333


Q ss_pred             cCCCCCHHHHHHcCccceecCC
Q 018632          192 TGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       192 tG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      ...-++|+||+++||||+|+..
T Consensus       160 ~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         160 RDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             SCEEEEHHHHHHHTSSSEECCC
T ss_pred             cCccccHHHHHHcCCCcEEecc
Confidence            3344899999999999999964

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.02  E-value=1.7e-05  Score=66.50  Aligned_cols=131  Identities=12%  Similarity=0.114  Sum_probs=85.4

Q ss_pred             CCHHHHHHHHHHHHHHhc-CC--Cccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWEN-DP--NIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~-d~--~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      ++.++...+...|..++. |+  .+.+   +.|      +|+...                   ..++..+..++.||..
T Consensus        33 I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~G------G~v~~g-------------------lai~d~i~~~~~~v~t   87 (192)
T d1y7oa1          33 VEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG------GSVSAG-------------------LAIVDTMNFIKADVQT   87 (192)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC------BCHHHH-------------------HHHHHHHHHSSSCEEE
T ss_pred             EchHHHHHHHHHHHHhhhhcccCceeeeecCCC------CCHHHH-------------------HHHHHHHHhcCcceEE
Confidence            788888888887776653 22  3444   333      443221                   2355677788999999


Q ss_pred             EEcccccccccccccc--CCeEEEeCceEEeccCCCcccccCccHH--H----HH-----------hhcChH--H-HHHH
Q 018632          132 ILNGVTMGGGAGVSIP--GTFRVACGKTVFATPETLIGFHPDAGAS--F----YL-----------SHLPGH--L-GEFL  189 (353)
Q Consensus       132 av~G~a~GgG~~lal~--cD~ria~~~a~f~~pe~~~G~~p~~g~~--~----~l-----------~r~~g~--~-a~~l  189 (353)
                      .+.|.|.+.|..|+++  +|.|++.++++|-+.+...|..-.....  .    .+           ....|.  . ..+.
T Consensus        88 ~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~  167 (192)
T d1y7oa1          88 IVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHAD  167 (192)
T ss_dssp             EEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             EeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence            9999999999887665  6899999999999998877764321111  0    01           111121  1 2444


Q ss_pred             HhcCCCCCHHHHHHcCccceecCC
Q 018632          190 ALTGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       190 ~ltG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      +-...-++|+||+++||||+|+..
T Consensus       168 ~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         168 AERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             hcCCceecHHHHHHcCCCcEEecC
Confidence            455667999999999999999854

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.83  E-value=4.5e-05  Score=63.70  Aligned_cols=134  Identities=14%  Similarity=0.061  Sum_probs=88.9

Q ss_pred             CCHHHHHHHHHHHHHHhcC--CCcccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEcc
Q 018632           58 LNTNMGAKLNKLFKAWEND--PNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNG  135 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~d--~~v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaav~G  135 (353)
                      +|.++..++...|..++..  ..|.+   ..-|.|+|+....                   .++..+..++.||...+.|
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I~l---~INS~GG~v~~g~-------------------ai~d~i~~~~~~v~tv~~G   84 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDIKI---YINSPGGSINEGL-------------------AILDIFNYIKSDIQTISFG   84 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEEE---EEEECCBCHHHHH-------------------HHHHHHHHSSSCEEEEEEE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCeEE---EEeCchhhhhHHH-------------------HHHHHHHhhCCceEEEEec
Confidence            7888888888888777543  33544   0113345543222                   3555667789999999999


Q ss_pred             ccccccccccccCC--eEEEeCceEEeccCCCcccccCccHH----H-----------HHhhcChH--H-HHHHHhcCCC
Q 018632          136 VTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS----F-----------YLSHLPGH--L-GEFLALTGAK  195 (353)
Q Consensus       136 ~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~~----~-----------~l~r~~g~--~-a~~l~ltG~~  195 (353)
                      .|.+.|..+++++|  .|++.++++|-+.....|..-...-.    .           .+....|.  . ..+.+-...-
T Consensus        85 ~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~~~d~~  164 (190)
T d2f6ia1          85 LVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYY  164 (190)
T ss_dssp             EECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCE
T ss_pred             cccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccCCee
Confidence            99999999999988  69999999999998877653111100    0           11111121  1 2233334455


Q ss_pred             CCHHHHHHcCccceecCC
Q 018632          196 LNGAEMMACGLATHYSVS  213 (353)
Q Consensus       196 ~~a~eA~~~Glv~~vv~~  213 (353)
                      ++|+||+++||||+|+..
T Consensus       165 l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         165 MNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             ECHHHHHHHTSCSEECCC
T ss_pred             ecHHHHHHcCCCcEEccc
Confidence            999999999999999964

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.71  E-value=3.5e-05  Score=64.56  Aligned_cols=129  Identities=12%  Similarity=0.073  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHHHHHhc---CCCccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEE
Q 018632           58 LNTNMGAKLNKLFKAWEN---DPNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVA  131 (353)
Q Consensus        58 l~~~~~~~L~~~l~~~~~---d~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIa  131 (353)
                      +|.++...+...+..++.   +..+.+   +.|      +|+..                   ...++..+..++.||..
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G------G~v~~-------------------g~~i~d~i~~~~~~V~t   89 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPIHMYINSPG------GVVTA-------------------GLAIYDTMQYILNPICT   89 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC------BCHHH-------------------HHHHHHHHHHSCSCEEE
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEEEEEeecCc------ccHHH-------------------HHHHHHHHHhhcCceEE
Confidence            677888888876666653   334555   443      33321                   12355677778999999


Q ss_pred             EEccccccccccccccCC--eEEEeCceEEeccCCCcccccCccHHHH-----------------HhhcChH--H-HHHH
Q 018632          132 ILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASFY-----------------LSHLPGH--L-GEFL  189 (353)
Q Consensus       132 av~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~g~~~~-----------------l~r~~g~--~-a~~l  189 (353)
                      .+.|.|.+.|..+++++|  .|++.++++|-+.+...|..-  -...+                 +....|.  . ..++
T Consensus        90 v~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G--~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~  167 (193)
T d1tg6a1          90 WCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARG--QATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESA  167 (193)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCc--CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            999999999999999998  599999999999888766531  11111                 0011111  1 2333


Q ss_pred             HhcCCCCCHHHHHHcCccceecCC
Q 018632          190 ALTGAKLNGAEMMACGLATHYSVS  213 (353)
Q Consensus       190 ~ltG~~~~a~eA~~~Glv~~vv~~  213 (353)
                      +-...-++|+||+++||||+|+..
T Consensus       168 ~~rD~~lta~EAl~yGliD~Ii~~  191 (193)
T d1tg6a1         168 MERDRYMSPMEAQEFGILDKVLVH  191 (193)
T ss_dssp             HSSCEEECHHHHHHHTSCSEECSS
T ss_pred             hccCccCCHHHHHHcCCCCEEccC
Confidence            333344999999999999999853

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=0.00012  Score=65.69  Aligned_cols=134  Identities=13%  Similarity=0.027  Sum_probs=94.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCC--ccc-CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 018632           56 NALNTNMGAKLNKLFKAWENDPN--IGF-GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  132 (353)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~--v~v-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaa  132 (353)
                      -.++++-+..-.+.++.++.-.-  |.+ -.++++ .|.+-.+             ........+.+..+..+++|+|+.
T Consensus       130 G~~~p~~~rKa~r~~~~a~~~~~Pii~~vDtpG~~-~g~~~E~-------------~g~~~~~a~~~~~~~~~~vP~i~v  195 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAY-PGVGAEE-------------RGQSEAIARNLREMSRLGVPVVCT  195 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSC-CSHHHHH-------------TTHHHHHHHHHHHHHTCSSCEEEE
T ss_pred             ccccHHHHHHHHHHHHHHHHcCcceEEEEecCccc-CCccccc-------------ccHHHHHHHHHHHHHhCCCceEEE
Confidence            35788888888888888876433  222 333322 2222221             222355666888899999999999


Q ss_pred             EccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHH-HHHHHhcCCCCCHHHHHHcCccceec
Q 018632          133 LNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYS  211 (353)
Q Consensus       133 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~-a~~l~ltG~~~~a~eA~~~Glv~~vv  211 (353)
                      |-|-+.|||......+|.+.+.++|+++.      +.|.+.++.++...--.. +.+.    ..+++++.+++|+||+|+
T Consensus       196 v~g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAea----lklta~dL~~lgiIDeII  265 (316)
T d2f9ya1         196 VIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSII  265 (316)
T ss_dssp             EEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCC
T ss_pred             EEhhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHHH----HhhhhHHHHHcCchhhcc
Confidence            99999999999889999999999999983      256555554443332223 4443    458899999999999999


Q ss_pred             CC
Q 018632          212 VS  213 (353)
Q Consensus       212 ~~  213 (353)
                      |.
T Consensus       266 ~E  267 (316)
T d2f9ya1         266 PE  267 (316)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.27  E-value=0.00092  Score=57.96  Aligned_cols=138  Identities=13%  Similarity=0.150  Sum_probs=87.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--cccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  121 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  121 (353)
                      |.++-.+-.-+.-+++......+..+.+.+.++.-  |....    |+|+.+.+-.        .....+.+.+..+ ..
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~lPlV~l~~----sgG~r~~eg~--------~~l~~~~~~~~~~-~~  157 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYD----SGGARIQEGI--------DSLSGYGKMFFAN-VK  157 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEE----ECSBCGGGTH--------HHHHHHHHHHHHH-HH
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhcCCCeEEEEe----cCCCcccccc--------eeccccceehHHH-HH
Confidence            44444554557788999999999999988876533  33310    3444443211        1112222222222 23


Q ss_pred             HhhCCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHHHH
Q 018632          122 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEM  201 (353)
Q Consensus       122 l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~eA  201 (353)
                      +.. .+|+|+++.|+|.||+.....+||++|+++++.+++.           +.    +++-      ..+|+.++.+|.
T Consensus       158 ls~-~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~a-----------GP----~vVe------~~~ge~~~~eel  215 (253)
T d1on3a1         158 LSG-VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT-----------GP----QVIK------SVTGEDVTADEL  215 (253)
T ss_dssp             HTT-TSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS-----------CH----HHHH------HHHCCCCCHHHH
T ss_pred             Hhc-cceEEEEEecCcccceeeccchhhheeccccceEEec-----------Cc----chhh------hhhCCcCChHhc
Confidence            333 5999999999999999999999999999998877753           11    1111      135677776643


Q ss_pred             -------HHcCccceecCCCCh
Q 018632          202 -------MACGLATHYSVSEKL  216 (353)
Q Consensus       202 -------~~~Glv~~vv~~~~l  216 (353)
                             ...|++|.|+++++.
T Consensus       216 Gga~~h~~~sG~iD~v~~~e~~  237 (253)
T d1on3a1         216 GGAEAHMAISGNIHFVAEDDDA  237 (253)
T ss_dssp             HSHHHHHHTTCCCSEEESSHHH
T ss_pred             cCHHHhhhccccceEEECCHHH
Confidence                   357999999987654

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.06  E-value=0.0027  Score=54.81  Aligned_cols=136  Identities=15%  Similarity=0.157  Sum_probs=84.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--cccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  121 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  121 (353)
                      |+++..+-.-..-+++......+..+++.+.+..-  |.+..    |+|..+.+-..        ....+.+.+ .... 
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~~P~I~~~d----sgG~r~~e~~~--------~l~~~~~~~-~~~~-  153 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGIPVIGIND----SGGARIQEGVD--------ALAGYGEIF-LRNT-  153 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEE----ECSBCGGGTHH--------HHHHHHHHH-HHHH-
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHcCCCEEEEEc----CCCcccccccc--------ccccchHHH-HHHH-
Confidence            44444454446778899888999998888775433  33211    23444433111        111111211 1222 


Q ss_pred             HhhCCCcEEEEEccccccccccccccCCeEEEeCc-eEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHHH
Q 018632          122 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE  200 (353)
Q Consensus       122 l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~e  200 (353)
                      ...-.+|+|+++.|+|.||+......||++|+.++ +.+.+.           +    |+++.      ..+|+.++.+|
T Consensus       154 ~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~a-----------G----p~vv~------~~~ge~~~~ee  212 (251)
T d1vrga1         154 LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT-----------G----PNVIK------AVTGEEISQED  212 (251)
T ss_dssp             HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS-----------C----HHHHH------HHHCCCCCHHH
T ss_pred             HHCCCCCEEEEEccCccccceehhhhCceEEEEccceeEEec-----------C----chhhh------hhcCCcCChHH
Confidence            22457999999999999999999999999998764 443322           1    11111      24788999887


Q ss_pred             H-------HHcCccceecCCC
Q 018632          201 M-------MACGLATHYSVSE  214 (353)
Q Consensus       201 A-------~~~Glv~~vv~~~  214 (353)
                      .       .+.|++|.+++++
T Consensus       213 lGga~~h~~~sG~~D~v~~de  233 (251)
T d1vrga1         213 LGGAMVHNQKSGNAHFLADND  233 (251)
T ss_dssp             HHBHHHHHHTSCCCSEEESSH
T ss_pred             ccchhhhhhccccceEEECCH
Confidence            5       4679999999865

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00063  Score=59.40  Aligned_cols=139  Identities=14%  Similarity=0.156  Sum_probs=85.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--cccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  121 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  121 (353)
                      |+++-.+-.-..-+++....+.+..+++.+.+..-  |.+.    -|+|..+.+-..        .... ..........
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~lPlI~~~----~sgG~r~~e~~~--------sl~~-~~~~~~~~~~  164 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFS----ASGGARMQEALM--------SLMQ-MAKTSAALAK  164 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHTCCEEEEE----EESSBCGGGTHH--------HHHH-HHHHHHHHHH
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHcCCCeEEEe----cCCCcccccccc--------hhhc-chhHHHHHHH
Confidence            44555555557788999999999999988875433  3321    133444432111        1111 2222233344


Q ss_pred             HhhCCCcEEEEEccccccccc-cccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCC----
Q 018632          122 LGTHLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL----  196 (353)
Q Consensus       122 l~~~~kpvIaav~G~a~GgG~-~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~----  196 (353)
                      +....+|+|+++.|+|.||+. .+++++|++++.+.+.+++.-           .    +++-      ..+|+.+    
T Consensus       165 ~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aG-----------P----~vve------~~~ge~~~e~~  223 (263)
T d2f9yb1         165 MQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAG-----------P----RVIE------QTVREKLPPGF  223 (263)
T ss_dssp             HHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSC-----------H----HHHH------HHHTSCCCTTT
T ss_pred             HHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccC-----------H----HHHh------hhcCCcCChhh
Confidence            556779999999999999976 478888888888888776531           1    1111      1223333    


Q ss_pred             -CHHHHHHcCccceecCCCCh
Q 018632          197 -NGAEMMACGLATHYSVSEKL  216 (353)
Q Consensus       197 -~a~eA~~~Glv~~vv~~~~l  216 (353)
                       +++-..+.|+||.|+++++.
T Consensus       224 g~a~~~~~~G~iD~vv~~ee~  244 (263)
T d2f9yb1         224 QRSEFLIEKGAIDMIVRRPEM  244 (263)
T ss_dssp             TBHHHHGGGTCCSEECCHHHH
T ss_pred             ccHHHHHhCCCCCEEECCHHH
Confidence             44555678999999976554

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.91  E-value=0.0049  Score=53.32  Aligned_cols=136  Identities=15%  Similarity=0.172  Sum_probs=86.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--cccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDPN--IGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  121 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~~--v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  121 (353)
                      |+++-.|..-+.-+++....+.+..+++.+.++.-  |.+..    |+|+.+.+-..        ....+.. .......
T Consensus        90 v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~lPlI~l~d----sgGarm~e~~~--------~~~~~~~-~~~~~~~  156 (258)
T d1xnya1          90 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGIND----SGGARIQEGVA--------SLGAYGE-IFRRNTH  156 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEC----CCSBCGGGTHH--------HHHHHHH-HHHHHHH
T ss_pred             EEEEechhhhhcCccchhhHHHHHHHHHHHHHcCCceEEEec----CCCcccCcccc--------cccchhH-HHHHHHH
Confidence            55555565567788999999999999988876533  33311    23344432211        1111111 2222222


Q ss_pred             HhhCCCcEEEEEccccccccccccccCCeEEEeC-ceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHHH
Q 018632          122 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE  200 (353)
Q Consensus       122 l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~-~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~e  200 (353)
                       ..-.+|+|+++.|+|.||+......||++|+.+ .+.+++.           +.    +++     + ..+|+.++.+|
T Consensus       157 -~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~a-----------GP----~vv-----~-~~~ge~i~~ee  214 (258)
T d1xnya1         157 -ASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT-----------GP----DVI-----K-TVTGEDVGFEE  214 (258)
T ss_dssp             -TTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS-----------CH----HHH-----H-HHHCCCCCHHH
T ss_pred             -HcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEec-----------CH----HHH-----H-HHhcCccChHH
Confidence             234699999999999999999999999988876 5555543           11    111     1 24788888887


Q ss_pred             H-------HHcCccceecCCC
Q 018632          201 M-------MACGLATHYSVSE  214 (353)
Q Consensus       201 A-------~~~Glv~~vv~~~  214 (353)
                      +       ..-|++|.+++++
T Consensus       215 lgga~~h~~~sG~~d~v~~de  235 (258)
T d1xnya1         215 LGGARTHNSTSGVAHHMAGDE  235 (258)
T ss_dssp             HHBHHHHHHTSSCCSEEESSH
T ss_pred             hccHHHHHhcCCeeEEEeCCH
Confidence            5       4569999999764

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.64  E-value=0.0078  Score=52.36  Aligned_cols=157  Identities=13%  Similarity=0.109  Sum_probs=98.1

Q ss_pred             CCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHH
Q 018632           42 ANSRMAILNRPSA-LNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSF  118 (353)
Q Consensus        42 ~~v~~I~lnrp~~-~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l  118 (353)
                      |...-|.-|+|.. ..+++++......+.++..+...--.+  -.-..|..|.+...             ....+...++
T Consensus        69 G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~~iPlv~l~dtpGf~~G~~~E~-------------~g~~~~ga~~  135 (271)
T d2a7sa2          69 GRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEY-------------NGIIRRGAKL  135 (271)
T ss_dssp             SCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHH-------------HCHHHHHHHH
T ss_pred             CeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHhCCceEEeechhhhhhhccHHH-------------hhHHHHHHHH
Confidence            3333344455542 358999999999999998876543333  22233555544332             2235666778


Q ss_pred             HHHHhhCCCcEEEEEccccccccccc----cccCCeEEEeCceEEeccCCCcccccCccHHHHHhh-cChHH--------
Q 018632          119 IYLLGTHLKPHVAILNGVTMGGGAGV----SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSH-LPGHL--------  185 (353)
Q Consensus       119 ~~~l~~~~kpvIaav~G~a~GgG~~l----al~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r-~~g~~--------  185 (353)
                      +.++..+.+|.|+.|=|.++|+|...    .+.+|++++.+++.++.       .++-|+...+.+ .+...        
T Consensus       136 ~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv-------Mgpegaa~v~~~~~l~~~~~~~~~~~  208 (271)
T d2a7sa2         136 LYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGEDID  208 (271)
T ss_dssp             HHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTTTTTTGGGTSSCCTT
T ss_pred             HHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee-------cCHHHHHHHHHHHhhhhhhhcccchH
Confidence            99999999999999999999987442    23578888877776664       333333333332 22110        


Q ss_pred             ----HHHHHhcCCCCCHHHHHHcCccceecCCCChhH
Q 018632          186 ----GEFLALTGAKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       186 ----a~~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                          ....-.....-++-.+.+.|++|.|+++.+...
T Consensus       209 ~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~  245 (271)
T d2a7sa2         209 KLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRG  245 (271)
T ss_dssp             SSTTHHHHHHHTTTSBSHHHHHHTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHH
Confidence                011112233456778889999999999877643

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.50  E-value=0.012  Score=50.77  Aligned_cols=136  Identities=16%  Similarity=0.178  Sum_probs=85.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC--CcccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHH
Q 018632           44 SRMAILNRPSALNALNTNMGAKLNKLFKAWENDP--NIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYL  121 (353)
Q Consensus        44 v~~I~lnrp~~~Nal~~~~~~~L~~~l~~~~~d~--~v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  121 (353)
                      |.++-.+-.-+.-+++......+..+.+.+.++.  -|.+-.    |+|+.+.+-.        .....+.. ..... .
T Consensus        91 v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~lP~I~l~d----sgGar~~eg~--------~~~~~~~~-~~~~~-~  156 (258)
T d2a7sa1          91 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGIND----GAGARIQEGV--------VSLGLYSR-IFRNN-I  156 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEC----CCSBCGGGCT--------HHHHHHHH-HHHHH-H
T ss_pred             EEEecccceEeCCccchhhhhHHHHHHHHHHhcCCceEEEec----cCCccccccc--------ccccchhh-HHHHH-H
Confidence            5555556555778899999999999998887653  333310    2333333210        01111111 11222 2


Q ss_pred             HhhCCCcEEEEEccccccccccccccCCeEEEeC-ceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCCCHHH
Q 018632          122 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACG-KTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAE  200 (353)
Q Consensus       122 l~~~~kpvIaav~G~a~GgG~~lal~cD~ria~~-~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~e  200 (353)
                      ...-.+|+|+++.|+|.||+......||++|+.+ .+.+++.           +.    +++     + ..+|+.++.+|
T Consensus       157 ~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~a-----------GP----~vV-----~-~~~ge~~~~ee  215 (258)
T d2a7sa1         157 LASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT-----------GP----DVI-----K-TVTGEEVTMEE  215 (258)
T ss_dssp             HHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSS-----------CH----HHH-----H-HHHCCCCCHHH
T ss_pred             HHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEcc-----------Ch----hHH-----H-HhcCCccChhh
Confidence            2345799999999999999999999999998865 4555432           11    111     1 24788888876


Q ss_pred             H-------HHcCccceecCCC
Q 018632          201 M-------MACGLATHYSVSE  214 (353)
Q Consensus       201 A-------~~~Glv~~vv~~~  214 (353)
                      .       .+.|++|.+++++
T Consensus       216 LGga~~h~~~sG~~D~v~~de  236 (258)
T d2a7sa1         216 LGGAHTHMAKSGTAHYAASGE  236 (258)
T ss_dssp             HHBHHHHHHTSCCCSEEESSH
T ss_pred             ccCHhHhhhhccccceEeCCH
Confidence            4       4579999999864

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.47  E-value=0.0016  Score=57.47  Aligned_cols=149  Identities=14%  Similarity=0.090  Sum_probs=82.6

Q ss_pred             cCCC-CCCCCCHHHHHHHHHHHHHHhcC--CCcccCCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCC
Q 018632           50 NRPS-ALNALNTNMGAKLNKLFKAWEND--PNIGFGSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHL  126 (353)
Q Consensus        50 nrp~-~~Nal~~~~~~~L~~~l~~~~~d--~~v~vg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  126 (353)
                      |.+. +.-++++.....+..+++.+.+.  |-|.+-.    |+|+.+.+-....  .......   +.+. -...+....
T Consensus       111 ~D~t~~gGs~~~~~~~K~~r~~~lA~~~~lP~I~l~d----s~Ga~~~~~~e~~--~~~~~~g---~~~~-~~a~ls~~~  180 (287)
T d1pixa2         111 SDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLN----CSGVKFDEQEKVY--PNRRGGG---TPFF-RNAELNQLG  180 (287)
T ss_dssp             ECTTTTTTEECTTHHHHHHHHHHHHHHHTCCEEEEEC----CCEECGGGHHHHS--SSTTSTT---HHHH-HHHHHHHTT
T ss_pred             eccccccccchhhHHHHHHHHHHhhhhcCCCEEEEec----CCcccCCcchhhc--cchhhHH---HHHH-HHHHHhhcC
Confidence            4433 55788899999999988887764  3333311    2334443211110  0000000   1111 123455678


Q ss_pred             CcEEEEEccccccccccccccCCeEEEeCceEEeccCC--CcccccCccHHHHHhhcChHHHHHHHhcCCCCCHH-----
Q 018632          127 KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET--LIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGA-----  199 (353)
Q Consensus       127 kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~--~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~~a~-----  199 (353)
                      +|+|++|-|.|.|||...+++||++++.+++.+.+.-.  --+..+..+........+.      ..+|+.++.+     
T Consensus       181 VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~------~~~ge~~~~eeLGGa  254 (287)
T d1pixa2         181 IPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIA------DMVDRTGKTEPPGAV  254 (287)
T ss_dssp             CCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHH------HHHHTTCCCCCSSBH
T ss_pred             CCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHH------hhhcccccccccccH
Confidence            99999999999999988888888888888888776322  2222222221111111111      1234444433     


Q ss_pred             H--HHHcCccceecCCC
Q 018632          200 E--MMACGLATHYSVSE  214 (353)
Q Consensus       200 e--A~~~Glv~~vv~~~  214 (353)
                      +  +..-|++|.+++++
T Consensus       255 ~~H~~~sG~~d~v~~~e  271 (287)
T d1pixa2         255 DIHYTETGFMREVYASE  271 (287)
T ss_dssp             HHHTTTSCCSCEEESSH
T ss_pred             HHhhhhcccceeecCCH
Confidence            3  34569999999774

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.38  E-value=0.01  Score=51.45  Aligned_cols=159  Identities=11%  Similarity=0.043  Sum_probs=97.5

Q ss_pred             EeCC-EEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHH
Q 018632           40 GKAN-SRMAILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTL  115 (353)
Q Consensus        40 ~~~~-v~~I~lnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~  115 (353)
                      +-+| ..-|.-|+|. ...+++++-.....+.++..+...--.+  -.-..|-.|.+-..             ....+..
T Consensus        63 r~~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~~iPli~l~DtpGf~~G~~~E~-------------~g~~~~g  129 (264)
T d1vrga2          63 RIQGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEH-------------GGIIRHG  129 (264)
T ss_dssp             EETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHH-------------TTHHHHH
T ss_pred             EecCceEEEEeccccccccchhhhhHHHHHHHHHHHHHhCCceEEEeecccccccHHHHH-------------HhHHHHH
Confidence            4444 3333345554 3357999999999999988886443222  22233555544322             2235666


Q ss_pred             HHHHHHHhhCCCcEEEEEcccccccccccc----ccCCeEEEeCceEEeccCCCcccccCccHHHHHhhc-ChH-----H
Q 018632          116 YSFIYLLGTHLKPHVAILNGVTMGGGAGVS----IPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PGH-----L  185 (353)
Q Consensus       116 ~~l~~~l~~~~kpvIaav~G~a~GgG~~la----l~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~-~g~-----~  185 (353)
                      .+++.++..+.+|.|+.|=|.++|+|..-.    +.+|++++.+++.++.       ..+-++...+.+. +-.     .
T Consensus       130 a~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v-------m~pe~aa~v~~~~~l~~~~~~~~  202 (264)
T d1vrga2         130 AKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEE  202 (264)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHH
T ss_pred             HHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe-------cCHHHhhhhhhhhhhhhhhCcHH
Confidence            778999999999999999999999876322    3588888887776663       3333333333221 100     0


Q ss_pred             -HHHH--HhcCCCCCHHHHHHcCccceecCCCChhH
Q 018632          186 -GEFL--ALTGAKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       186 -a~~l--~ltG~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                       ..++  .+.-+.-++-.+.+.|++|.|+++.+...
T Consensus       203 ~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~  238 (264)
T d1vrga2         203 TRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRK  238 (264)
T ss_dssp             HHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHH
Confidence             0000  01112246788899999999998877543

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.01  E-value=0.013  Score=50.61  Aligned_cols=150  Identities=15%  Similarity=0.103  Sum_probs=93.9

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHh
Q 018632           47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLG  123 (353)
Q Consensus        47 I~lnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  123 (353)
                      |.-|+|. ...+++++......+.++..+...--.+  -.-..|-.|.+-.             .....+...+++.++.
T Consensus        69 via~~~~~~~G~~~~~~a~Ka~~fi~lc~~~~iPli~l~d~pGf~~G~~~E-------------~~g~~~~ga~~~~a~a  135 (263)
T d1xnya2          69 IVANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQE-------------HDGIIRRGAKLIFAYA  135 (263)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHH-------------HTTHHHHHHHHHHHHH
T ss_pred             EEecccceecCCcchhhHHHHHHHHHHHHHhCCceEEeecccccccchhHH-------------HHhHHHHHHHHHHHHH
Confidence            3345543 3458999999999999988887543222  1112355554432             1223566677899999


Q ss_pred             hCCCcEEEEEccccccccccccc----cCCeEEEeCceEEeccCCCcccccCccHHHHHhhcCh-----------HH-HH
Q 018632          124 THLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG-----------HL-GE  187 (353)
Q Consensus       124 ~~~kpvIaav~G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g-----------~~-a~  187 (353)
                      .+.+|.|+.|-|.++|+|....+    ..|+++|.+++.++.       .++-++...+.+.-.           .. ..
T Consensus       136 ~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv-------m~pe~aa~il~~~~~~~a~~~~~~~~~~~~~  208 (263)
T d1xnya2         136 EATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATRARLIQ  208 (263)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHSCCTTCSSSHHHHHH
T ss_pred             ccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc-------cCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence            99999999999999998765433    468888887777664       333333333322111           00 11


Q ss_pred             HHHhcCCCCCHHHHHHcCccceecCCCChhH
Q 018632          188 FLALTGAKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       188 ~l~ltG~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                      ++  .-...++..+...|++|.|+++.+...
T Consensus       209 ~~--~~~~~~p~~aA~~g~iD~VIdP~dTR~  237 (263)
T d1xnya2         209 EY--EDALLNPYTAAERGYVDAVIMPSDTRR  237 (263)
T ss_dssp             HH--HHHHSSSHHHHHHTSSSEECCGGGHHH
T ss_pred             HH--HHHhcCHHHHHHcccCCcccCHHHHHH
Confidence            11  011235677889999999999887653

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=95.76  E-value=0.021  Score=49.30  Aligned_cols=151  Identities=13%  Similarity=0.013  Sum_probs=93.3

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHh
Q 018632           47 AILNRPS-ALNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLG  123 (353)
Q Consensus        47 I~lnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  123 (353)
                      |.=|+|. ...+++++-.....+.++..+.-.--.+  -.-..|..|.+-..             ....+...+++.++.
T Consensus        71 vian~~~~~~G~~~~~~a~Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~-------------~g~i~~ga~~~~a~a  137 (264)
T d1on3a2          71 IVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEY-------------GGIIRHGAKMLYAYS  137 (264)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHH-------------TTHHHHHHHHHHHHH
T ss_pred             EEeccchhcccccChHHHHHHHHHHHHHHhcCCceEEEeccccccccHHHHH-------------HHHHHHHHHHHHHHH
Confidence            3345554 3568999999999999888876433222  22233555554322             224566778899999


Q ss_pred             hCCCcEEEEEccccccccccccc----cCCeEEEeCceEEeccCCCcccccCccHHHHHhhc-Ch----HHH--HHHH--
Q 018632          124 THLKPHVAILNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-PG----HLG--EFLA--  190 (353)
Q Consensus       124 ~~~kpvIaav~G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~-~g----~~a--~~l~--  190 (353)
                      ++.+|.|+.|=|.++|+|..-.+    .+|++++.+++.++       ..++-|+...+.+. +.    ...  .+.+  
T Consensus       138 ~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~-------vMg~Egaa~v~~~~el~a~~~~~~~~~~~~~e  210 (264)
T d1on3a2         138 EATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEE  210 (264)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHH
T ss_pred             cCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhh-------hccHHHHHHHHHhhhhhhhhhhhhhhHHHHHH
Confidence            99999999999999998754333    46777777666555       44333444333321 11    000  1100  


Q ss_pred             hcCCCCCHHHHHHcCccceecCCCChh
Q 018632          191 LTGAKLNGAEMMACGLATHYSVSEKLP  217 (353)
Q Consensus       191 ltG~~~~a~eA~~~Glv~~vv~~~~l~  217 (353)
                      ...+.-++-.+.+.|++|.|+++.+..
T Consensus       211 ~~~~~~~p~~aA~~g~iD~VIdP~eTR  237 (264)
T d1on3a2         211 YQNAFNTPYVAAARGQVDDVIDPADTR  237 (264)
T ss_dssp             HHHHHSSHHHHHHTTSSSEECCGGGHH
T ss_pred             HHHHhcCHHHHHHcCCCCeeECHHHHH
Confidence            111224577888999999999887754

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=95.10  E-value=0.15  Score=44.54  Aligned_cols=146  Identities=16%  Similarity=0.004  Sum_probs=88.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCccc--CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 018632           55 LNALNTNMGAKLNKLFKAWENDPNIGF--GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  132 (353)
Q Consensus        55 ~Nal~~~~~~~L~~~l~~~~~d~~v~v--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaa  132 (353)
                      .-+++++......+.++..+...--.+  -....|-.|-+-..             ....+...+++.++..+.+|.|+.
T Consensus        96 ~G~l~~~~a~K~~rfi~lc~~~~iPlv~l~D~pGf~~g~~~E~-------------~g~~r~ga~~~~a~~~~~VP~isv  162 (299)
T d1pixa3          96 GGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEK-------------AELLGLGQSLIYSIQTSHIPQFEI  162 (299)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHH-------------TTHHHHHHHHHHHHHTCCCCEEEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCeEEEEEeCCCcccchHHHh-------------hhHHHHHHHHHHHHHhhcceeEEE
Confidence            456899999999999998887543222  22233555544321             223455667888999999999999


Q ss_pred             Eccccccccccccc----cCCeEEEeCceEEeccCCCcccccCccHHHHHh-hcChHH-------------HHHHHh-cC
Q 018632          133 LNGVTMGGGAGVSI----PGTFRVACGKTVFATPETLIGFHPDAGASFYLS-HLPGHL-------------GEFLAL-TG  193 (353)
Q Consensus       133 v~G~a~GgG~~lal----~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~-r~~g~~-------------a~~l~l-tG  193 (353)
                      |=|.++|+|....+    ..|++++     +..|...+|+.++-++...+. +.+...             -.+++- .-
T Consensus       163 i~r~~~G~a~~am~g~~~~~~~~~~-----~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~  237 (299)
T d1pixa3         163 TLRKGTAAAHYVLGGPQGNDTNAFS-----IGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFY  237 (299)
T ss_dssp             ECSEEETTHHHHTTCTTCTTTEEEE-----EECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             EecccccccccccccCccCccccee-----cCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            99999999854333    2343331     123444556654444443332 222110             011110 01


Q ss_pred             CCCCHHHHHHcCccceecCCCChhH
Q 018632          194 AKLNGAEMMACGLATHYSVSEKLPL  218 (353)
Q Consensus       194 ~~~~a~eA~~~Glv~~vv~~~~l~~  218 (353)
                      +..++-.+.+.|++|.|+++.+...
T Consensus       238 ~~~sp~~aAs~~~iD~IIDP~dTR~  262 (299)
T d1pixa3         238 TKSRPKVCAELGLVDEIVDMNKIRG  262 (299)
T ss_dssp             HTTSHHHHHHHTSSSEECCTTTHHH
T ss_pred             HhcCHHHHHHhCCcCeeECHHHHHH
Confidence            2357788999999999999988654

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.67  E-value=0.012  Score=52.49  Aligned_cols=69  Identities=13%  Similarity=0.172  Sum_probs=51.4

Q ss_pred             CCCcEEEEEccccccccccccccCCeEEEeCceEEeccCCCcccccCccHHHHHhhcChHHHHHHHhcCCCC--CHHH--
Q 018632          125 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL--NGAE--  200 (353)
Q Consensus       125 ~~kpvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~a~~l~ltG~~~--~a~e--  200 (353)
                      -.+|+|++|.|.|+|+|.-++..||++|+.+++.+.+.           +...+...          +|+.+  |.+|  
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt-----------Gp~~l~~~----------lG~eVy~s~~eLG  297 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT-----------GAPAINKM----------LGREVYTSNLQLG  297 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS-----------CHHHHHHH----------SSSCCCSCTHHHH
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEee-----------CHHHHHHh----------cCccccCChhHhC
Confidence            47999999999999999999999999999998877654           11222222          35544  3332  


Q ss_pred             ----HHHcCccceecCCC
Q 018632          201 ----MMACGLATHYSVSE  214 (353)
Q Consensus       201 ----A~~~Glv~~vv~~~  214 (353)
                          ..+.|++|.+++++
T Consensus       298 G~~i~~~nGv~h~~a~dd  315 (333)
T d1uyra1         298 GTQIMYNNGVSHLTAVDD  315 (333)
T ss_dssp             SHHHHHHHTSSSEEESSH
T ss_pred             CHhHHhhCCCceEEeCCH
Confidence                35789999999765

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.69  E-value=0.86  Score=40.87  Aligned_cols=107  Identities=14%  Similarity=0.124  Sum_probs=63.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCccc---CCCCCcccCcchhhHHHhhhcCChHHHHHHHHHHHHHHHHHhhCCCcEEEE
Q 018632           56 NALNTNMGAKLNKLFKAWENDPNIGF---GSGRAFCAGGDIVSLYHFMNQGKLEECKDFFRTLYSFIYLLGTHLKPHVAI  132 (353)
Q Consensus        56 Nal~~~~~~~L~~~l~~~~~d~~v~v---g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kpvIaa  132 (353)
                      -.+.++-...-.+.+..+.+..++-+   ..-..|+.|-+-..             ....+....++.++..+.+|+|..
T Consensus       108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~pGF~~G~~~E~-------------~gilr~GA~iv~A~~~~~vP~i~v  174 (404)
T d1uyra2         108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMF-------------NEVLKYGSFIVDALVDYKQPIIIY  174 (404)
T ss_dssp             TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCCCCBCC-------------------CTHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CccCchHHHHHHHHHHHhhhccccceEEeecCCcccCcHHHHH-------------HHHHHHHHHHHHHHHhcCCCEEEE
Confidence            35678888888888876665444333   44466887765321             123455667888999999999999


Q ss_pred             E--ccccccccccccc---cCCeEEEeCceEEeccCCCcccccCccHHHHHhh
Q 018632          133 L--NGVTMGGGAGVSI---PGTFRVACGKTVFATPETLIGFHPDAGASFYLSH  180 (353)
Q Consensus       133 v--~G~a~GgG~~lal---~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~r  180 (353)
                      |  .|.+.||+..+.-   ..|..     ..|+.|..++|+.++-|+.....|
T Consensus       175 I~~~g~~~GGa~vv~~~~~~~~~~-----~~yAwP~a~~gVm~pEGav~I~fr  222 (404)
T d1uyra2         175 IPPTGELRGGSWVVVDPTINADQM-----EMYADVNARAGVLEPQGMVGIKFR  222 (404)
T ss_dssp             ECTTCEEEHHHHHTTCGGGGTTTE-----EEEEETTCEEESSCHHHHHHHHSC
T ss_pred             EeCCcccchhhhhcccCccCCccc-----eEEECCccccccCChhhhhhheec
Confidence            9  7777776544332   22221     134455556666666666554433